AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073375

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073375.t1 MTR_2g437150 77.713 341 72 2 1 339 1 339 0.0 541
MS.gene073375.t1 MTR_2g437170 77.126 341 74 2 1 339 1 339 0.0 534
MS.gene073375.t1 MTR_2g437100 78.426 343 65 3 1 339 7 344 0.0 521
MS.gene073375.t1 MTR_2g437160 70.294 340 95 3 1 340 12 345 6.94e-168 474
MS.gene073375.t1 MTR_2g437120 71.976 339 88 2 1 339 1 332 1.03e-167 474
MS.gene073375.t1 MTR_2g438010 69.322 339 97 2 1 339 21 352 1.42e-167 474
MS.gene073375.t1 MTR_2g437960 71.681 339 92 3 1 339 1 335 1.05e-162 461
MS.gene073375.t1 MTR_2g437960 71.681 339 92 3 1 339 1 335 1.44e-162 462
MS.gene073375.t1 MTR_2g437180 66.962 339 104 1 1 339 1 331 1.40e-158 451
MS.gene073375.t1 MTR_2g076320 67.847 339 102 2 1 339 1 332 1.36e-157 448
MS.gene073375.t1 MTR_2g437990 67.847 339 101 3 1 339 1 331 1.19e-155 444
MS.gene073375.t1 MTR_2g437940 66.962 339 76 2 1 339 1 303 3.71e-152 433
MS.gene073375.t1 MTR_2g437200 58.529 340 104 2 35 339 10 347 9.73e-126 367
MS.gene073375.t1 MTR_2g437240 57.941 340 98 3 36 340 19 348 3.58e-124 364
MS.gene073375.t1 MTR_2g438020 57.680 319 98 2 56 339 70 386 1.92e-120 357
MS.gene073375.t1 MTR_2g437130 58.710 310 119 3 31 340 21 321 5.10e-116 342
MS.gene073375.t1 MTR_2g437020 50.448 335 153 5 27 359 17 340 3.04e-104 312
MS.gene073375.t1 MTR_2g437080 52.303 304 135 3 36 339 26 319 7.31e-102 306
MS.gene073375.t1 MTR_2g436440 50.784 319 147 3 21 339 17 325 9.61e-102 306
MS.gene073375.t1 MTR_2g437060 50.311 322 148 6 18 339 25 334 1.34e-99 300
MS.gene073375.t1 MTR_2g436400 48.773 326 141 5 16 339 25 326 4.35e-98 296
MS.gene073375.t1 MTR_2g437030 49.840 313 147 3 28 340 104 406 2.83e-94 289
MS.gene073375.t1 MTR_2g437260 49.671 304 141 6 39 340 23 316 2.35e-91 279
MS.gene073375.t1 MTR_2g437040 45.994 337 165 3 22 358 19 338 1.19e-90 277
MS.gene073375.t1 MTR_4g119550 44.013 309 167 3 52 359 46 349 4.75e-85 263
MS.gene073375.t1 MTR_4g120380 44.172 326 155 5 46 353 37 353 3.12e-81 253
MS.gene073375.t1 MTR_2g436460 47.826 299 148 4 50 345 40 333 3.52e-81 253
MS.gene073375.t1 MTR_4g119580 44.781 297 155 3 43 339 34 321 2.08e-80 251
MS.gene073375.t1 MTR_4g120380 46.259 294 149 3 46 339 37 321 9.15e-80 250
MS.gene073375.t1 MTR_2g019840 37.662 308 176 5 38 339 24 321 9.77e-62 202
MS.gene073375.t1 MTR_2g019810 41.667 288 150 6 59 339 33 309 3.97e-61 201
MS.gene073375.t1 MTR_4g049400 60.510 157 55 2 1 157 1 150 3.76e-54 178
MS.gene073375.t1 MTR_2g437160 70.543 129 33 2 1 129 12 135 2.15e-53 179
MS.gene073375.t1 MTR_2g437160 68.595 121 38 0 220 340 134 254 1.57e-51 174
MS.gene073375.t1 MTR_3g450500 28.869 336 234 3 31 363 12 345 6.67e-44 155
MS.gene073375.t1 MTR_2g436370 44.565 184 85 3 14 197 19 185 1.50e-40 142
MS.gene073375.t1 MTR_4g007490 30.449 312 205 6 30 338 16 318 2.69e-38 140
MS.gene073375.t1 MTR_4g119570 37.727 220 113 5 140 356 17 215 1.32e-34 127
MS.gene073375.t1 MTR_2g437090 51.402 107 52 0 233 339 1 107 1.01e-32 120
MS.gene073375.t1 MTR_8g081000 27.612 268 190 2 88 353 85 350 5.06e-25 105
MS.gene073375.t1 MTR_8g081000 27.612 268 190 2 88 353 85 350 5.74e-25 105
MS.gene073375.t1 MTR_8g081000 27.612 268 190 2 88 353 85 350 6.19e-25 104
MS.gene073375.t1 MTR_8g080990 28.968 252 175 2 89 338 73 322 2.21e-24 103
MS.gene073375.t1 MTR_3g085240 65.000 60 21 0 290 349 174 233 2.85e-18 84.0
MS.gene073375.t1 MTR_3g085240 40.741 162 71 5 20 180 34 171 6.12e-18 82.8
MS.gene073375.t1 MTR_2g436380 60.656 61 24 0 233 293 1 61 4.57e-18 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073375.t1 AT5G07900 29.582 311 212 4 30 337 43 349 1.02e-46 164
MS.gene073375.t1 AT1G21150 31.677 322 211 5 40 354 33 352 8.40e-44 156
MS.gene073375.t1 AT1G21150 31.677 322 211 5 40 354 97 416 3.56e-43 155
MS.gene073375.t1 AT1G21150 32.680 306 200 4 53 354 13 316 8.60e-43 152
MS.gene073375.t1 AT1G61970 27.557 352 203 9 57 364 51 394 4.67e-30 119
MS.gene073375.t1 AT1G61970 27.557 352 203 9 57 364 51 394 4.67e-30 119
MS.gene073375.t1 AT1G61970 27.557 352 203 9 57 364 51 394 4.67e-30 119
MS.gene073375.t1 AT1G61970 27.557 352 203 9 57 364 51 394 4.67e-30 119
MS.gene073375.t1 AT1G61970 27.557 352 203 9 57 364 51 394 4.67e-30 119
MS.gene073375.t1 AT1G61970 27.557 352 203 9 57 364 51 394 4.67e-30 119
MS.gene073375.t1 AT1G61970 27.557 352 203 9 57 364 51 394 4.67e-30 119
MS.gene073375.t1 AT5G64950 28.165 316 218 6 26 337 10 320 2.30e-28 114
MS.gene073375.t1 AT1G61990 28.481 316 178 7 59 338 53 356 2.40e-28 114
MS.gene073375.t1 AT1G61990 28.481 316 178 7 59 338 53 356 2.40e-28 114
MS.gene073375.t1 AT1G61980 27.586 319 186 7 59 339 53 364 1.23e-27 112
MS.gene073375.t1 AT1G61980 27.586 319 186 7 59 339 53 364 1.23e-27 112
MS.gene073375.t1 AT1G61980 27.586 319 186 7 59 339 53 364 1.23e-27 112
MS.gene073375.t1 AT3G46950 29.740 269 178 6 35 302 30 288 2.41e-26 109
MS.gene073375.t1 AT1G62120 27.358 318 186 7 59 337 57 368 1.12e-24 104
MS.gene073375.t1 AT1G61960 30.242 248 166 5 57 302 51 293 3.36e-23 100
MS.gene073375.t1 AT1G62110 29.545 264 173 7 44 302 39 294 7.97e-23 99.8
MS.gene073375.t1 AT5G23930 28.889 270 179 6 27 293 22 281 1.43e-21 95.9
MS.gene073375.t1 AT1G62085 28.629 248 167 5 59 302 56 297 1.50e-20 93.2
MS.gene073375.t1 AT1G62085 28.629 248 167 5 59 302 56 297 1.50e-20 93.2
MS.gene073375.t1 AT1G62150 28.000 250 170 5 57 302 57 300 1.74e-20 92.8
MS.gene073375.t1 AT1G62010 26.335 281 166 5 93 337 71 346 3.60e-17 82.8

Find 64 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGACGACTGATTT+TGG 0.089239 2.4:-54600621 MS.gene073375:CDS
AAAAGAGGGTTGTTGAATTT+TGG 0.120653 2.4:+54601164 None:intergenic
TGATTCCTATAACAACTTTA+TGG 0.155706 2.4:+54601207 None:intergenic
CAAACAAGACCATCTATATT+TGG 0.180790 2.4:-54600567 MS.gene073375:CDS
TCGTATCTCATCAATAATTT+TGG 0.189747 2.4:-54601047 MS.gene073375:CDS
CAGAAGCTTCTGAGTGAAAT+TGG 0.201963 2.4:+54601122 None:intergenic
TTGGAGGAAGTTAAGGGTTT+AGG 0.213631 2.4:-54600522 MS.gene073375:CDS
AAGCTACTTCGTAAAATTCT+AGG 0.214273 2.4:+54600774 None:intergenic
TGGAGGAAGTTAAGGGTTTA+GGG 0.236533 2.4:-54600521 MS.gene073375:CDS
ATAACAGAATCAGGCTTATC+TGG 0.261784 2.4:+54600966 None:intergenic
CATCCTTCAACAACTACTTT+TGG 0.271023 2.4:-54600495 MS.gene073375:CDS
AAAGATTTGATAGCTGATTC+AGG 0.315111 2.4:+54601017 None:intergenic
AGACCAACCCCATTTCTTAA+AGG 0.320363 2.4:+54600413 None:intergenic
GATTCCTATAACAACTTTAT+GGG 0.322085 2.4:+54601208 None:intergenic
TAACTCATTGGAGGAAGTTA+AGG 0.330911 2.4:-54600529 MS.gene073375:CDS
AGAAAACATTTGTGACAGTT+TGG 0.337519 2.4:+54600269 None:intergenic
ATTGAAGTCAGCATCAAATA+AGG 0.342231 2.4:+54600357 None:intergenic
ATGTACTCCAATATCGAATT+AGG 0.344018 2.4:+54600679 None:intergenic
AAAGGATTTGATTAACTCAT+TGG 0.346872 2.4:-54600541 MS.gene073375:CDS
TTGTTTGCCTAATTCGATAT+TGG 0.351222 2.4:-54600686 MS.gene073375:CDS
AAGATGTTATTCATGCATTT+CGG 0.356695 2.4:-54600386 MS.gene073375:CDS
AAGTTGATACCTTTAAGAAA+TGG 0.365182 2.4:-54600422 MS.gene073375:CDS
AGTTGATACCTTTAAGAAAT+GGG 0.365271 2.4:-54600421 MS.gene073375:CDS
TCGAAGCCATGTTGAAGAAA+TGG 0.385554 2.4:-54601238 None:intergenic
AAGAAGGTGATAACAGAATC+AGG 0.386708 2.4:+54600957 None:intergenic
AATTGATATTAGACACAATA+AGG 0.406184 2.4:+54600637 None:intergenic
TTTCTTATAGTTTGGAGAAA+AGG 0.411421 2.4:-54600251 MS.gene073375:CDS
TTTAAGAAATGGGGTTGGTC+TGG 0.420884 2.4:-54600411 MS.gene073375:CDS
ACCATCTATATTTGGTTCAA+AGG 0.427799 2.4:-54600559 MS.gene073375:CDS
GCAAACAATGACATCCTTGT+TGG 0.429184 2.4:+54600701 None:intergenic
TCAATTGGGTTGGAATTCCT+TGG 0.440659 2.4:-54600298 MS.gene073375:CDS
GAGAAGTGTTGGTTGAAAAG+AGG 0.440691 2.4:+54601149 None:intergenic
TCCTTTGAACCAAATATAGA+TGG 0.443491 2.4:+54600558 None:intergenic
AACTCATTGGAGGAAGTTAA+GGG 0.448139 2.4:-54600528 MS.gene073375:CDS
TTTGGAGAAAAGGATCATTC+CGG 0.451276 2.4:-54600241 MS.gene073375:CDS
ATTCCAAAAGTAGTTGTTGA+AGG 0.457781 2.4:+54600492 None:intergenic
AGCTACTTCGTAAAATTCTA+GGG 0.494414 2.4:+54600775 None:intergenic
AGAAGTGTTGGTTGAAAAGA+GGG 0.500709 2.4:+54601150 None:intergenic
AGAAGCTTCTGAGTGAAATT+GGG 0.502779 2.4:+54601123 None:intergenic
TTTGGGTCAATCAATTGGGT+TGG 0.506924 2.4:-54600308 MS.gene073375:CDS
TAACAGAATCAGGCTTATCT+GGG 0.509112 2.4:+54600967 None:intergenic
CAAATCTTTCAACTACAAGC+AGG 0.525391 2.4:-54601003 MS.gene073375:CDS
ATTGCTTTGATGGCCAAGAA+AGG 0.530580 2.4:-54600471 MS.gene073375:CDS
CTACTTAATAATTCAAAACA+AGG 0.538944 2.4:+54600735 None:intergenic
ATGAGATACGATGCAGCGAA+TGG 0.541068 2.4:+54601059 None:intergenic
ATCAGAAGAGGAAGCACCGT+TGG 0.542723 2.4:+54600821 None:intergenic
ATTAGACACAATAAGGCGAT+AGG 0.545180 2.4:+54600644 None:intergenic
ATTGCATAACTGAGGCCCTC+CGG 0.545428 2.4:+54600222 None:intergenic
GTTGATACCTTTAAGAAATG+GGG 0.553181 2.4:-54600420 MS.gene073375:CDS
TGATTCAGATTCAGATGTTG+TGG 0.559545 2.4:+54601097 None:intergenic
TGACAGTTTGGTAAGTGCCA+AGG 0.560015 2.4:+54600281 None:intergenic
GGATTTGATTAACTCATTGG+AGG 0.570633 2.4:-54600538 MS.gene073375:CDS
ATACCTTTAAGAAATGGGGT+TGG 0.587688 2.4:-54600416 MS.gene073375:CDS
CTAGGGTATGCAGTTAACAA+TGG 0.602093 2.4:+54600792 None:intergenic
CAATGGAACAATATCAGAAG+AGG 0.605003 2.4:+54600809 None:intergenic
TTAGACACAATAAGGCGATA+GGG 0.612715 2.4:+54600645 None:intergenic
TACTTAATAATTCAAAACAA+GGG 0.615001 2.4:+54600736 None:intergenic
AAATTGGGAACGAGAAGTGT+TGG 0.618593 2.4:+54601138 None:intergenic
GGAGAAAAGGATCATTCCGG+AGG 0.633439 2.4:-54600238 MS.gene073375:CDS
CAAAAGAAATTGCATAACTG+AGG 0.634260 2.4:+54600214 None:intergenic
GAGAAAAGGATCATTCCGGA+GGG 0.649160 2.4:-54600237 MS.gene073375:CDS
AACAGAATCAGGCTTATCTG+GGG 0.694184 2.4:+54600968 None:intergenic
TAGGTTCTTGAAAACCAACA+AGG 0.701717 2.4:-54600715 MS.gene073375:CDS
GGTTGGGAAGAAAGTAACCA+AGG 0.719556 2.4:+54600882 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTAATAATTCAAAACAA+GGG + chr2.4:54600655-54600674 None:intergenic 15.0%
!! AATTGATATTAGACACAATA+AGG + chr2.4:54600754-54600773 None:intergenic 20.0%
!! CTACTTAATAATTCAAAACA+AGG + chr2.4:54600656-54600675 None:intergenic 20.0%
!!! ACAAATGTTTTCTTATAGTT+TGG - chr2.4:54601129-54601148 MS.gene073375:CDS 20.0%
!!! CTTGTTTTGAATTATTAAGT+AGG - chr2.4:54600654-54600673 MS.gene073375:CDS 20.0%
! AAAGGATTTGATTAACTCAT+TGG - chr2.4:54600847-54600866 MS.gene073375:CDS 25.0%
! AAGATGTTATTCATGCATTT+CGG - chr2.4:54601002-54601021 MS.gene073375:CDS 25.0%
! AAGGTATGAGTAAAAAACTT+TGG - chr2.4:54600936-54600955 MS.gene073375:CDS 25.0%
! AGGTATGAGTAAAAAACTTT+GGG - chr2.4:54600937-54600956 MS.gene073375:CDS 25.0%
! GATAGAAAAAATTGGAACTT+TGG + chr2.4:54600548-54600567 None:intergenic 25.0%
! GATTCCTATAACAACTTTAT+GGG + chr2.4:54600183-54600202 None:intergenic 25.0%
! TGATTCCTATAACAACTTTA+TGG + chr2.4:54600184-54600203 None:intergenic 25.0%
! TTTCTTATAGTTTGGAGAAA+AGG - chr2.4:54601137-54601156 MS.gene073375:CDS 25.0%
!! AGTTGATACCTTTAAGAAAT+GGG - chr2.4:54600967-54600986 MS.gene073375:CDS 25.0%
!! ATGCAATTTCTTTTGATGAA+AGG - chr2.4:54601182-54601201 MS.gene073375:CDS 25.0%
!! TCGTATCTCATCAATAATTT+TGG - chr2.4:54600341-54600360 MS.gene073375:CDS 25.0%
!! TTTTCCCATAAAGTTGTTAT+AGG - chr2.4:54600176-54600195 MS.gene073375:CDS 25.0%
!!! AAGTTGATACCTTTAAGAAA+TGG - chr2.4:54600966-54600985 MS.gene073375:CDS 25.0%
!!! TTCCAATTTTTTCTATCCAA+CGG - chr2.4:54600551-54600570 MS.gene073375:CDS 25.0%
!!! TTTTTTACTCATACCTTTCT+TGG + chr2.4:54600933-54600952 None:intergenic 25.0%
AAGCTACTTCGTAAAATTCT+AGG + chr2.4:54600617-54600636 None:intergenic 30.0%
AGAAAACATTTGTGACAGTT+TGG + chr2.4:54601122-54601141 None:intergenic 30.0%
AGCTACTTCGTAAAATTCTA+GGG + chr2.4:54600616-54600635 None:intergenic 30.0%
ATGTACTCCAATATCGAATT+AGG + chr2.4:54600712-54600731 None:intergenic 30.0%
ATTCCAAAAGTAGTTGTTGA+AGG + chr2.4:54600899-54600918 None:intergenic 30.0%
ATTGAAGTCAGCATCAAATA+AGG + chr2.4:54601034-54601053 None:intergenic 30.0%
CAAAAGAAATTGCATAACTG+AGG + chr2.4:54601177-54601196 None:intergenic 30.0%
CAAACAAGACCATCTATATT+TGG - chr2.4:54600821-54600840 MS.gene073375:CDS 30.0%
TCCTTTGAACCAAATATAGA+TGG + chr2.4:54600833-54600852 None:intergenic 30.0%
TTGTTTGCCTAATTCGATAT+TGG - chr2.4:54600702-54600721 MS.gene073375:CDS 30.0%
! AAAAGAGGGTTGTTGAATTT+TGG + chr2.4:54600227-54600246 None:intergenic 30.0%
! AAAGAGGGTTGTTGAATTTT+GGG + chr2.4:54600226-54600245 None:intergenic 30.0%
! AAAGATTTGATAGCTGATTC+AGG + chr2.4:54600374-54600393 None:intergenic 30.0%
! ACCATCTATATTTGGTTCAA+AGG - chr2.4:54600829-54600848 MS.gene073375:CDS 30.0%
! ACTTTGGCAATAACATTTTG+TGG + chr2.4:54600532-54600551 None:intergenic 30.0%
! CTTTGGCAATAACATTTTGT+GGG + chr2.4:54600531-54600550 None:intergenic 30.0%
! GTTGATACCTTTAAGAAATG+GGG - chr2.4:54600968-54600987 MS.gene073375:CDS 30.0%
! TGATTCGTTCATGAGTTTTT+GGG - chr2.4:54601063-54601082 MS.gene073375:CDS 30.0%
! TTTGGCAATAACATTTTGTG+GGG + chr2.4:54600530-54600549 None:intergenic 30.0%
!! AAAACCATGGTTTTTGAAGA+AGG + chr2.4:54600450-54600469 None:intergenic 30.0%
!! ATCAATTTGACGACTGATTT+TGG - chr2.4:54600767-54600786 MS.gene073375:CDS 30.0%
!! TTGATTCGTTCATGAGTTTT+TGG - chr2.4:54601062-54601081 MS.gene073375:CDS 30.0%
!!! AGTTTTTGGGTCAATCAATT+GGG - chr2.4:54601076-54601095 MS.gene073375:CDS 30.0%
!!! TACTTTTGGAATTGCTTTGA+TGG - chr2.4:54600907-54600926 MS.gene073375:CDS 30.0%
AACTCATTGGAGGAAGTTAA+GGG - chr2.4:54600860-54600879 MS.gene073375:CDS 35.0%
AAGAAGGTGATAACAGAATC+AGG + chr2.4:54600434-54600453 None:intergenic 35.0%
AGAAGCTTCTGAGTGAAATT+GGG + chr2.4:54600268-54600287 None:intergenic 35.0%
ATAACAGAATCAGGCTTATC+TGG + chr2.4:54600425-54600444 None:intergenic 35.0%
ATCACCTTCTTCAAAAACCA+TGG - chr2.4:54600443-54600462 MS.gene073375:CDS 35.0%
ATTAGACACAATAAGGCGAT+AGG + chr2.4:54600747-54600766 None:intergenic 35.0%
CAAATCTTTCAACTACAAGC+AGG - chr2.4:54600385-54600404 MS.gene073375:CDS 35.0%
CAATGGAACAATATCAGAAG+AGG + chr2.4:54600582-54600601 None:intergenic 35.0%
CACCGTTGGATAGAAAAAAT+TGG + chr2.4:54600556-54600575 None:intergenic 35.0%
GGATTTGATTAACTCATTGG+AGG - chr2.4:54600850-54600869 MS.gene073375:CDS 35.0%
TAACAGAATCAGGCTTATCT+GGG + chr2.4:54600424-54600443 None:intergenic 35.0%
TAACTCATTGGAGGAAGTTA+AGG - chr2.4:54600859-54600878 MS.gene073375:CDS 35.0%
TAGGTTCTTGAAAACCAACA+AGG - chr2.4:54600673-54600692 MS.gene073375:CDS 35.0%
TGATTCAGATTCAGATGTTG+TGG + chr2.4:54600294-54600313 None:intergenic 35.0%
TTAGACACAATAAGGCGATA+GGG + chr2.4:54600746-54600765 None:intergenic 35.0%
TTTGGAGAAAAGGATCATTC+CGG - chr2.4:54601147-54601166 MS.gene073375:CDS 35.0%
! AAGAGGGTTGTTGAATTTTG+GGG + chr2.4:54600225-54600244 None:intergenic 35.0%
! ATACCTTTAAGAAATGGGGT+TGG - chr2.4:54600972-54600991 MS.gene073375:CDS 35.0%
! CAATAACATTTTGTGGGGTT+GGG + chr2.4:54600525-54600544 None:intergenic 35.0%
! CATCCTTCAACAACTACTTT+TGG - chr2.4:54600893-54600912 MS.gene073375:CDS 35.0%
!! AGAAGTGTTGGTTGAAAAGA+GGG + chr2.4:54600241-54600260 None:intergenic 35.0%
!! TCATCATCAAAAAAGCACCT+TGG - chr2.4:54600489-54600508 MS.gene073375:CDS 35.0%
!!! GAGTTTTTGGGTCAATCAAT+TGG - chr2.4:54601075-54601094 MS.gene073375:CDS 35.0%
AACAGAATCAGGCTTATCTG+GGG + chr2.4:54600423-54600442 None:intergenic 40.0%
AGACCAACCCCATTTCTTAA+AGG + chr2.4:54600978-54600997 None:intergenic 40.0%
CAGAAGCTTCTGAGTGAAAT+TGG + chr2.4:54600269-54600288 None:intergenic 40.0%
CTAGGGTATGCAGTTAACAA+TGG + chr2.4:54600599-54600618 None:intergenic 40.0%
GCAAACAATGACATCCTTGT+TGG + chr2.4:54600690-54600709 None:intergenic 40.0%
TGGAGGAAGTTAAGGGTTTA+GGG - chr2.4:54600867-54600886 MS.gene073375:CDS 40.0%
TGTTGTCGTGTGAAAAACCA+TGG + chr2.4:54600463-54600482 None:intergenic 40.0%
TTGGAGGAAGTTAAGGGTTT+AGG - chr2.4:54600866-54600885 MS.gene073375:CDS 40.0%
TTTGGGTCAATCAATTGGGT+TGG - chr2.4:54601080-54601099 MS.gene073375:CDS 40.0%
! AAATTGGGAACGAGAAGTGT+TGG + chr2.4:54600253-54600272 None:intergenic 40.0%
! ATTGCTTTGATGGCCAAGAA+AGG - chr2.4:54600917-54600936 MS.gene073375:CDS 40.0%
! GCAATAACATTTTGTGGGGT+TGG + chr2.4:54600526-54600545 None:intergenic 40.0%
!! GAGAAGTGTTGGTTGAAAAG+AGG + chr2.4:54600242-54600261 None:intergenic 40.0%
!! TCAATTGGGTTGGAATTCCT+TGG - chr2.4:54601090-54601109 MS.gene073375:CDS 40.0%
!! TTTAAGAAATGGGGTTGGTC+TGG - chr2.4:54600977-54600996 MS.gene073375:CDS 40.0%
ATGAGATACGATGCAGCGAA+TGG + chr2.4:54600332-54600351 None:intergenic 45.0%
GAGAAAAGGATCATTCCGGA+GGG - chr2.4:54601151-54601170 MS.gene073375:CDS 45.0%
GGTTGGGAAGAAAGTAACCA+AGG + chr2.4:54600509-54600528 None:intergenic 45.0%
TGACAGTTTGGTAAGTGCCA+AGG + chr2.4:54601110-54601129 None:intergenic 45.0%
ATTGCATAACTGAGGCCCTC+CGG + chr2.4:54601169-54601188 None:intergenic 50.0%
GGAGAAAAGGATCATTCCGG+AGG - chr2.4:54601150-54601169 MS.gene073375:CDS 50.0%
!! ATCAGAAGAGGAAGCACCGT+TGG + chr2.4:54600570-54600589 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 54600158 54601252 54600158 ID=MS.gene073375
chr2.4 mRNA 54600158 54601252 54600158 ID=MS.gene073375.t1;Parent=MS.gene073375
chr2.4 exon 54600158 54601252 54600158 ID=MS.gene073375.t1.exon1;Parent=MS.gene073375.t1
chr2.4 CDS 54600158 54601252 54600158 ID=cds.MS.gene073375.t1;Parent=MS.gene073375.t1
Gene Sequence

>MS.gene073375

ATGTTGAAGAAATGGTTTTTTTCCCATAAAGTTGTTATAGGAATCATCACAGCAAAATCAACAACCCCAAAATTCAACAACCCTCTTTTCAACCAACACTTCTCGTTCCCAATTTCACTCAGAAGCTTCTGCACCACAACATCTGAATCTGAATCAGAATCAGTCACAAATCCATTCGCTGCATCGTATCTCATCAATAATTTTGGTTTCACTCCTGAATCAGCTATCAAATCTTTCAACTACAAGCAGGTTCGTTTCAATACCCCAGATAAGCCTGATTCTGTTATCACCTTCTTCAAAAACCATGGTTTTTCACACGACAACATACGCATCATCATCAAAAAAGCACCTTGGTTACTTTCTTCCCAACCCCACAAAATGTTATTGCCAAAGTTCCAATTTTTTCTATCCAACGGTGCTTCCTCTTCTGATATTGTTCCATTGTTAACTGCATACCCTAGAATTTTACGAAGTAGCTTGAAGAAACTAATAATCCCTTGTTTTGAATTATTAAGTAGGTTCTTGAAAACCAACAAGGATGTCATTGTTTGCCTAATTCGATATTGGAGTACATTTTCTACTAATCCCTATCGCCTTATTGTGTCTAATATCAATTTGACGACTGATTTTGGAGTTTCTGATTCTATCATCGCTAATTTGCTTCAAACAAGACCATCTATATTTGGTTCAAAGGATTTGATTAACTCATTGGAGGAAGTTAAGGGTTTAGGGTTTCATCCTTCAACAACTACTTTTGGAATTGCTTTGATGGCCAAGAAAGGTATGAGTAAAAAACTTTGGGATGAGAAAGTTGATACCTTTAAGAAATGGGGTTGGTCTGGTGAAGATGTTATTCATGCATTTCGGATGCAGCCTTATTTGATGCTGACTTCAATTGATAAGATTGATTCGTTCATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCCTTGGCACTTACCAAACTGTCACAAATGTTTTCTTATAGTTTGGAGAAAAGGATCATTCCGGAGGGCCTCAGTTATGCAATTTCTTTTGATGAAAGGTTTGCGAGAAAAGAATGCAAGCTTAGTTGCACCATTTGCTTATTCTGA
Protein sequence

>MS.gene073375.t1

MLKKWFFSHKVVIGIITAKSTTPKFNNPLFNQHFSFPISLRSFCTTTSESESESVTNPFAASYLINNFGFTPESAIKSFNYKQVRFNTPDKPDSVITFFKNHGFSHDNIRIIIKKAPWLLSSQPHKMLLPKFQFFLSNGASSSDIVPLLTAYPRILRSSLKKLIIPCFELLSRFLKTNKDVIVCLIRYWSTFSTNPYRLIVSNINLTTDFGVSDSIIANLLQTRPSIFGSKDLINSLEEVKGLGFHPSTTTFGIALMAKKGMSKKLWDEKVDTFKKWGWSGEDVIHAFRMQPYLMLTSIDKIDSFMSFWVNQLGWNSLALTKLSQMFSYSLEKRIIPEGLSYAISFDERFARKECKLSCTICLF