AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073377

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073377.t1 MTR_2g437130 94.340 265 15 0 48 312 123 387 0.0 509
MS.gene073377.t1 MTR_2g437200 69.323 251 74 1 48 295 147 397 1.20e-121 355
MS.gene073377.t1 MTR_2g437170 64.179 268 91 2 47 309 136 403 1.54e-116 342
MS.gene073377.t1 MTR_2g437990 63.806 268 95 1 47 312 131 398 6.68e-116 341
MS.gene073377.t1 MTR_2g076320 63.569 269 95 1 47 312 131 399 8.94e-116 340
MS.gene073377.t1 MTR_2g437150 62.593 270 96 2 47 311 136 405 8.41e-115 337
MS.gene073377.t1 MTR_2g437160 60.902 266 102 1 47 310 144 409 8.80e-114 335
MS.gene073377.t1 MTR_2g437960 60.821 268 102 1 48 312 135 402 1.83e-113 334
MS.gene073377.t1 MTR_2g437960 60.821 268 102 1 48 312 135 402 3.92e-113 334
MS.gene073377.t1 MTR_2g438020 61.567 268 99 2 48 312 186 452 1.86e-112 335
MS.gene073377.t1 MTR_2g437120 63.910 266 92 2 48 310 133 397 2.36e-112 332
MS.gene073377.t1 MTR_2g437240 55.486 319 132 3 3 312 97 414 6.64e-112 330
MS.gene073377.t1 MTR_2g438010 60.517 271 103 2 46 312 149 419 1.52e-111 330
MS.gene073377.t1 MTR_2g437180 58.427 267 106 2 48 311 131 395 6.70e-106 315
MS.gene073377.t1 MTR_2g437940 55.797 276 111 2 48 312 95 370 2.18e-100 300
MS.gene073377.t1 MTR_2g437100 59.449 254 98 2 47 295 141 394 1.07e-98 296
MS.gene073377.t1 MTR_2g437080 51.362 257 125 0 48 304 122 378 1.09e-90 275
MS.gene073377.t1 MTR_2g437160 63.415 205 72 1 109 310 114 318 1.66e-89 270
MS.gene073377.t1 MTR_2g436440 50.958 261 128 0 48 308 128 388 1.25e-86 265
MS.gene073377.t1 MTR_2g437060 50.965 259 123 2 48 304 137 393 8.99e-85 260
MS.gene073377.t1 MTR_2g437030 49.808 261 131 0 48 308 208 468 3.49e-84 261
MS.gene073377.t1 MTR_2g437020 52.896 259 119 2 48 304 121 378 1.24e-83 257
MS.gene073377.t1 MTR_4g119550 51.362 257 125 0 48 304 132 388 1.09e-82 255
MS.gene073377.t1 MTR_2g437040 47.126 261 138 0 48 308 122 382 1.07e-78 244
MS.gene073377.t1 MTR_2g437260 43.431 274 144 4 48 312 116 387 3.60e-78 243
MS.gene073377.t1 MTR_2g436400 47.348 264 117 3 48 300 129 381 8.56e-78 242
MS.gene073377.t1 MTR_2g436460 50.988 253 123 1 48 299 127 379 4.52e-75 235
MS.gene073377.t1 MTR_4g119580 43.320 247 140 0 48 294 124 370 9.44e-64 206
MS.gene073377.t1 MTR_4g120380 42.510 247 142 0 48 294 124 370 7.68e-62 201
MS.gene073377.t1 MTR_2g437090 50.588 170 84 0 140 309 2 171 1.45e-58 186
MS.gene073377.t1 MTR_4g120380 43.172 227 129 0 48 274 124 350 1.41e-56 188
MS.gene073377.t1 MTR_4g120380 26.596 282 170 8 5 261 147 416 1.53e-14 73.9
MS.gene073377.t1 MTR_2g019810 42.800 250 139 3 48 295 111 358 3.34e-56 186
MS.gene073377.t1 MTR_2g019840 38.672 256 153 3 48 301 123 376 1.93e-50 171
MS.gene073377.t1 MTR_4g119570 35.907 259 131 2 38 294 4 229 1.27e-46 157
MS.gene073377.t1 MTR_3g450500 27.668 253 177 2 48 294 118 370 1.58e-26 107
MS.gene073377.t1 MTR_3g085240 57.778 90 21 1 198 287 176 248 3.74e-25 101
MS.gene073377.t1 MTR_4g007490 29.921 254 169 4 48 294 117 368 2.65e-24 101
MS.gene073377.t1 MTR_8g081000 26.275 255 175 4 48 294 136 385 1.21e-21 94.7
MS.gene073377.t1 MTR_8g081000 26.275 255 175 4 48 294 136 385 1.28e-21 94.4
MS.gene073377.t1 MTR_8g081000 26.275 255 175 4 48 294 136 385 1.90e-21 94.0
MS.gene073377.t1 MTR_2g436380 61.017 59 23 0 140 198 2 60 4.19e-19 85.9
MS.gene073377.t1 MTR_8g080990 26.829 246 177 2 48 290 123 368 1.86e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073377.t1 AT5G07900 31.225 253 166 4 48 293 148 399 8.24e-35 130
MS.gene073377.t1 AT1G21150 27.843 255 178 3 48 296 99 353 1.96e-28 112
MS.gene073377.t1 AT1G21150 27.843 255 178 3 48 296 135 389 3.92e-28 112
MS.gene073377.t1 AT1G21150 27.843 255 178 3 48 296 199 453 6.71e-28 112
MS.gene073377.t1 AT5G64950 27.778 270 161 6 48 294 118 376 1.33e-20 91.7
MS.gene073377.t1 AT1G61970 29.927 274 145 8 48 279 131 399 3.10e-17 82.0
MS.gene073377.t1 AT1G61970 29.927 274 145 8 48 279 131 399 3.10e-17 82.0
MS.gene073377.t1 AT1G61970 29.927 274 145 8 48 279 131 399 3.10e-17 82.0
MS.gene073377.t1 AT1G61970 29.927 274 145 8 48 279 131 399 3.10e-17 82.0
MS.gene073377.t1 AT1G61970 29.927 274 145 8 48 279 131 399 3.10e-17 82.0
MS.gene073377.t1 AT1G61970 29.927 274 145 8 48 279 131 399 3.10e-17 82.0
MS.gene073377.t1 AT1G61970 29.927 274 145 8 48 279 131 399 3.10e-17 82.0
MS.gene073377.t1 AT1G62010 26.394 269 159 4 48 279 117 383 2.03e-16 79.7
MS.gene073377.t1 AT1G61980 27.675 271 155 6 48 279 131 399 1.36e-15 77.4
MS.gene073377.t1 AT1G61980 27.675 271 155 6 48 279 131 399 1.36e-15 77.4
MS.gene073377.t1 AT1G61980 27.675 271 155 6 48 279 131 399 1.36e-15 77.4
MS.gene073377.t1 AT1G62110 26.829 205 137 4 16 209 93 295 2.59e-12 67.4
MS.gene073377.t1 AT3G46950 29.208 202 123 6 48 239 131 322 3.44e-11 63.9
MS.gene073377.t1 AT1G61960 30.058 173 101 5 48 209 131 294 7.90e-11 63.2

Find 62 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGCAAAGATATCAAATT+TGG 0.180143 2.4:+54566348 None:intergenic
AAACTATTCTGTAAAATTCT+AGG 0.190911 2.4:+54566450 None:intergenic
TTCAATTGATAAGATTAATT+TGG 0.211307 2.4:-54566025 MS.gene073377:CDS
TTGGAGGAAGTTAAGGGTTT+AGG 0.213631 2.4:-54566207 MS.gene073377:CDS
GACCCTTCAACTTCAACTTT+TGG 0.225478 2.4:-54566180 MS.gene073377:CDS
TGGAGGAAGTTAAGGGTTTA+GGG 0.238470 2.4:-54566206 MS.gene073377:CDS
ATTCTTCGGCACTTTCTAAA+AGG 0.266057 2.4:-54565969 MS.gene073377:CDS
AGATTATGAAGTCACCTATT+TGG 0.280909 2.4:+54565702 None:intergenic
GTTAAGTTATTGATTGACTA+TGG 0.285651 2.4:-54566306 MS.gene073377:CDS
ACCAGGGATTGAAACCCTTT+TGG 0.291942 2.4:+54567345 None:intergenic
TAGTACTTTGGAGGAAGTTA+AGG 0.340131 2.4:-54566214 MS.gene073377:CDS
CCCAAAAGGGTTTCAATCCC+TGG 0.352735 2.4:-54567346 MS.gene073377:CDS
TGACATGCCATTCACCAAAT+AGG 0.363432 2.4:-54565716 None:intergenic
TTAGTTACAGTTTGCAGAAA+AGG 0.377592 2.4:-54565936 MS.gene073377:CDS
TGAACCGTTTGCTCCGTCTA+AGG 0.377750 2.4:-54565842 MS.gene073377:CDS
ATCCTCATAGCCTCCACTTC+TGG 0.383329 2.4:+54567250 None:intergenic
GATGTTATTCGTGCATTTAG+AGG 0.388931 2.4:-54566069 MS.gene073377:CDS
TTGACAAGACCAGCTATACT+TGG 0.394866 2.4:-54566252 MS.gene073377:CDS
AATTGATTTCCTTAGTACTT+TGG 0.395237 2.4:-54566226 MS.gene073377:CDS
TCAATTGGGTTGGAATTCTT+CGG 0.404558 2.4:-54565983 MS.gene073377:CDS
AGTACTTTGGAGGAAGTTAA+GGG 0.430815 2.4:-54566213 MS.gene073377:CDS
ATGTATGAGTAAAACACTTT+GGG 0.441511 2.4:-54566136 MS.gene073377:CDS
GAAGTCACCTATTTGGTGAA+TGG 0.443693 2.4:+54565709 None:intergenic
TTCCTCAAACCTTTCATCAC+AGG 0.451862 2.4:+54565883 None:intergenic
AATGTATGAGTAAAACACTT+TGG 0.452530 2.4:-54566137 MS.gene073377:CDS
TTCCTGTGATGAAAGGTTTG+AGG 0.465337 2.4:-54565885 MS.gene073377:CDS
AACTGAGAACATATTTGCTT+AGG 0.466357 2.4:+54565812 None:intergenic
TTATTTATTAAAGCTTTATG+AGG 0.468070 2.4:-54565773 MS.gene073377:CDS
TTAACAGTAGTAAGATTGTA+AGG 0.474106 2.4:+54566330 None:intergenic
CTGCAATTTCCTGTGATGAA+AGG 0.481186 2.4:-54565892 MS.gene073377:CDS
AAGGATTGTTCCAAGGGCAT+TGG 0.488885 2.4:-54565917 MS.gene073377:CDS
TCAATTGATCCAAGTATAGC+TGG 0.498779 2.4:+54566243 None:intergenic
TGATTTCCTTAGTACTTTGG+AGG 0.499163 2.4:-54566223 MS.gene073377:CDS
CCACAAGGATCATAAGTTGA+TGG 0.500141 2.4:+54567291 None:intergenic
CTTAGGAACATTTCCTTAGA+CGG 0.503257 2.4:+54565829 None:intergenic
ACGGCCAATGAAAACCCAAA+AGG 0.504614 2.4:-54567360 None:intergenic
CGGCCAATGAAAACCCAAAA+GGG 0.509267 2.4:-54567359 None:intergenic
ATTGAAGTCAACAACAAGTC+AGG 0.516236 2.4:+54566042 None:intergenic
TAACTTCCTCCAAAGTACTA+AGG 0.517307 2.4:+54566217 None:intergenic
TGCGGTAAGGTGGCCAGAAG+TGG 0.524003 2.4:-54567263 MS.gene073377:CDS
ATTTCCTTAGACGGAGCAAA+CGG 0.526804 2.4:+54565838 None:intergenic
TTTGGGTTAATCAATTGGGT+TGG 0.527975 2.4:-54565993 MS.gene073377:CDS
AGCAAACGGTTCAACTAAGC+TGG 0.533205 2.4:+54565852 None:intergenic
GACCCAAAAGTTGAAGTTGA+AGG 0.537017 2.4:+54566177 None:intergenic
GGCCAGAAGTGGAGGCTATG+AGG 0.540535 2.4:-54567252 MS.gene073377:CDS
AATTGCAGAACCAATGCCCT+TGG 0.540852 2.4:+54565907 None:intergenic
TGCAGAAAAGGATTGTTCCA+AGG 0.541911 2.4:-54565924 MS.gene073377:CDS
GCAGAAAAGGATTGTTCCAA+GGG 0.547363 2.4:-54565923 MS.gene073377:CDS
AGAGAATTCATGTGAAAACC+AGG 0.560693 2.4:+54567328 None:intergenic
CCTTGTGGTGGATTGCGGTA+AGG 0.564088 2.4:-54567276 MS.gene073377:CDS
ACCCAAAAGTTGAAGTTGAA+GGG 0.582729 2.4:+54566178 None:intergenic
CAAAAGCAATCTAGCAATAG+CGG 0.586332 2.4:+54566272 None:intergenic
TCAACTTATGATCCTTGTGG+TGG 0.587243 2.4:-54567288 MS.gene073377:CDS
ATGATCCTTGTGGTGGATTG+CGG 0.607856 2.4:-54567281 MS.gene073377:CDS
GGTAAGGTGGCCAGAAGTGG+AGG 0.615417 2.4:-54567260 MS.gene073377:CDS
CCATCAACTTATGATCCTTG+TGG 0.634672 2.4:-54567291 MS.gene073377:CDS
CATGTCAATGTTCTCCTCAG+TGG 0.650724 2.4:+54565732 None:intergenic
TGTGGTGGATTGCGGTAAGG+TGG 0.656191 2.4:-54567273 MS.gene073377:CDS
GAGAATTCATGTGAAAACCA+GGG 0.658766 2.4:+54567329 None:intergenic
CCTTACCGCAATCCACCACA+AGG 0.671980 2.4:+54567276 None:intergenic
GAGGATGAAGAAGAGATGAG+CGG 0.704134 2.4:-54567233 MS.gene073377:intron
CGTAAATCTTGCATCCACTG+AGG 0.719555 2.4:-54565746 MS.gene073377:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATTGATAAGATTAATT+TGG - chr2.4:54567045-54567064 MS.gene073377:intron 15.0%
!!! TTATTTATTAAAGCTTTATG+AGG - chr2.4:54567297-54567316 MS.gene073377:CDS 15.0%
!!! TTTCAATTTTTTCTATCTAA+AGG - chr2.4:54566557-54566576 MS.gene073377:intron 15.0%
!! AAACTATTCTGTAAAATTCT+AGG + chr2.4:54566623-54566642 None:intergenic 20.0%
!! AAGAAAGTGAAAAATGAATT+GGG + chr2.4:54566438-54566457 None:intergenic 20.0%
!! ATATGTTAGATATAGAAAAC+AGG - chr2.4:54566053-54566072 MS.gene073377:CDS 20.0%
!! CTCTTATAAAATTCAAAAAG+AGG + chr2.4:54566662-54566681 None:intergenic 20.0%
!! GATAGAAAAAATTGAAACTT+TGG + chr2.4:54566554-54566573 None:intergenic 20.0%
!!! AAGTTGATGTTTTTAAGAAA+TGG - chr2.4:54566963-54566982 MS.gene073377:intron 20.0%
!!! AGTTGATGTTTTTAAGAAAT+GGG - chr2.4:54566964-54566983 MS.gene073377:intron 20.0%
!!! CTCTTTTTGAATTTTATAAG+AGG - chr2.4:54566660-54566679 MS.gene073377:intron 20.0%
!!! TAGAATTTTACAGAATAGTT+TGG - chr2.4:54566622-54566641 MS.gene073377:intron 20.0%
! AAACAGGCTAAAATTTAATG+TGG - chr2.4:54566069-54566088 MS.gene073377:CDS 25.0%
! AAACTGTAACTAAAAATACG+TGG + chr2.4:54567127-54567146 None:intergenic 25.0%
! AACATATCAATAACCAATCA+GGG + chr2.4:54566040-54566059 None:intergenic 25.0%
! AATGTATGAGTAAAACACTT+TGG - chr2.4:54566933-54566952 MS.gene073377:intron 25.0%
! ATGTATGAGTAAAACACTTT+GGG - chr2.4:54566934-54566953 MS.gene073377:intron 25.0%
! GAAGAAAGTGAAAAATGAAT+TGG + chr2.4:54566439-54566458 None:intergenic 25.0%
! TAACATATCAATAACCAATC+AGG + chr2.4:54566041-54566060 None:intergenic 25.0%
! TAAGGCAAAGATATCAAATT+TGG + chr2.4:54566725-54566744 None:intergenic 25.0%
! TTAACAGTAGTAAGATTGTA+AGG + chr2.4:54566743-54566762 None:intergenic 25.0%
! TTTGCTAGGATTAGATATAA+AGG - chr2.4:54566215-54566234 MS.gene073377:CDS 25.0%
!! AATTGATTTCCTTAGTACTT+TGG - chr2.4:54566844-54566863 MS.gene073377:intron 25.0%
!! AGAATTAGGGTTTTCAAATT+AGG - chr2.4:54566183-54566202 MS.gene073377:CDS 25.0%
!! ATTTGTTGGAAAATTGGAAT+GGG + chr2.4:54566299-54566318 None:intergenic 25.0%
!! CAAATATGTTCTCAGTTTTA+AGG - chr2.4:54567264-54567283 MS.gene073377:CDS 25.0%
!! GTTAAGTTATTGATTGACTA+TGG - chr2.4:54566764-54566783 MS.gene073377:intron 25.0%
!! TTTTCACATGAATTCTCTTT+TGG - chr2.4:54565747-54565766 MS.gene073377:CDS 25.0%
!!! AATTTGTTGGAAAATTGGAA+TGG + chr2.4:54566300-54566319 None:intergenic 25.0%
!!! AGTTTTTGGGTTAATCAATT+GGG - chr2.4:54567073-54567092 MS.gene073377:intron 25.0%
!!! GTTGATGTTTTTAAGAAATG+GGG - chr2.4:54566965-54566984 MS.gene073377:intron 25.0%
!!! TAATTTGGTGTTGAGTTTTT+GGG - chr2.4:54567060-54567079 MS.gene073377:intron 25.0%
!!! TTAATTTGGTGTTGAGTTTT+TGG - chr2.4:54567059-54567078 MS.gene073377:intron 25.0%
!!! TTGTGAATTTGTTGGAAAAT+TGG + chr2.4:54566305-54566324 None:intergenic 25.0%
AAAATTGGAATGGGAAAAGA+GGG + chr2.4:54566290-54566309 None:intergenic 30.0%
AACTGAGAACATATTTGCTT+AGG + chr2.4:54567261-54567280 None:intergenic 30.0%
CTCCAACATTTGAAAATTCT+CGG + chr2.4:54566153-54566172 None:intergenic 30.0%
TATTGGAATCTGAAAAACCA+AGG + chr2.4:54566467-54566486 None:intergenic 30.0%
TTAGGTTAACATTGTTTGCT+AGG - chr2.4:54566201-54566220 MS.gene073377:CDS 30.0%
TTAGTTACAGTTTGCAGAAA+AGG - chr2.4:54567134-54567153 MS.gene073377:intron 30.0%
! AAAAATGAATTGGGCTTTTG+AGG + chr2.4:54566429-54566448 None:intergenic 30.0%
! AAACCCTAATTCTACACTTT+TGG + chr2.4:54566176-54566195 None:intergenic 30.0%
! ACTTTGGAAGAATTGAATTG+TGG + chr2.4:54566538-54566557 None:intergenic 30.0%
! ATCCGAGAATTTTCAAATGT+TGG - chr2.4:54566148-54566167 MS.gene073377:CDS 30.0%
! CTTTGGAAGAATTGAATTGT+GGG + chr2.4:54566537-54566556 None:intergenic 30.0%
! GTTTTCTCATTTTCTCTTCA+TGG + chr2.4:54565914-54565933 None:intergenic 30.0%
! TATGATAATGCTGCGTATAT+TGG + chr2.4:54566484-54566503 None:intergenic 30.0%
!! ATGTTTTTAAGAAATGGGGT+TGG - chr2.4:54566969-54566988 MS.gene073377:intron 30.0%
!!! AAGAAGTTTTAGAGAAAACG+TGG - chr2.4:54565962-54565981 MS.gene073377:CDS 30.0%
!!! AGAAGTTTTAGAGAAAACGT+GGG - chr2.4:54565963-54565982 MS.gene073377:CDS 30.0%
!!! ATATGTTCTCAGTTTTAAGG+AGG - chr2.4:54567267-54567286 MS.gene073377:CDS 30.0%
!!! GAGTTTTTGGGTTAATCAAT+TGG - chr2.4:54567072-54567091 MS.gene073377:intron 30.0%
AAATTGGAATGGGAAAAGAG+GGG + chr2.4:54566289-54566308 None:intergenic 35.0%
AATTGAATTGTGGGTATCTG+AGG + chr2.4:54566528-54566547 None:intergenic 35.0%
ACCCAAAAGTTGAAGTTGAA+GGG + chr2.4:54566895-54566914 None:intergenic 35.0%
AGAGAATTCATGTGAAAACC+AGG + chr2.4:54565745-54565764 None:intergenic 35.0%
AGGCTAAAATTTAATGTGGC+TGG - chr2.4:54566073-54566092 MS.gene073377:CDS 35.0%
ATTCTTCGGCACTTTCTAAA+AGG - chr2.4:54567101-54567120 MS.gene073377:intron 35.0%
ATTGAAGTCAACAACAAGTC+AGG + chr2.4:54567031-54567050 None:intergenic 35.0%
CAAAAGCAATCTAGCAATAG+CGG + chr2.4:54566801-54566820 None:intergenic 35.0%
CTTAGGAACATTTCCTTAGA+CGG + chr2.4:54567244-54567263 None:intergenic 35.0%
GAAAATTGGAATGGGAAAAG+AGG + chr2.4:54566291-54566310 None:intergenic 35.0%
GAGAATTCATGTGAAAACCA+GGG + chr2.4:54565744-54565763 None:intergenic 35.0%
GATGTTATTCGTGCATTTAG+AGG - chr2.4:54567001-54567020 MS.gene073377:intron 35.0%
GGCTAAAATTTAATGTGGCT+GGG - chr2.4:54566074-54566093 MS.gene073377:CDS 35.0%
GTTAGAGTAAACCAATGTGA+AGG - chr2.4:54566107-54566126 MS.gene073377:CDS 35.0%
TCAATTGATCCAAGTATAGC+TGG + chr2.4:54566830-54566849 None:intergenic 35.0%
TGATTTCCTTAGTACTTTGG+AGG - chr2.4:54566847-54566866 MS.gene073377:intron 35.0%
TTCACTTTCTTCACAAACCT+TGG - chr2.4:54566447-54566466 MS.gene073377:CDS 35.0%
TTCGGAAGTTGTGAATTTGT+TGG + chr2.4:54566313-54566332 None:intergenic 35.0%
! ACCCTTCAACTTCAACTTTT+GGG - chr2.4:54566891-54566910 MS.gene073377:intron 35.0%
! AGTACTTTGGAGGAAGTTAA+GGG - chr2.4:54566857-54566876 MS.gene073377:intron 35.0%
! GAGCCAAAAGTGTAGAATTA+GGG - chr2.4:54566170-54566189 MS.gene073377:CDS 35.0%
! TAACTTCCTCCAAAGTACTA+AGG + chr2.4:54566856-54566875 None:intergenic 35.0%
! TAGTACTTTGGAGGAAGTTA+AGG - chr2.4:54566856-54566875 MS.gene073377:intron 35.0%
! TTTGGGTTAATCAATTGGGT+TGG - chr2.4:54567077-54567096 MS.gene073377:intron 35.0%
!! AGGGGTTGATAATGATTTGT+GGG + chr2.4:54566271-54566290 None:intergenic 35.0%
!! TCAATTGGGTTGGAATTCTT+CGG - chr2.4:54567087-54567106 MS.gene073377:intron 35.0%
ATTTCCTTAGACGGAGCAAA+CGG + chr2.4:54567235-54567254 None:intergenic 40.0%
CCATCAACTTATGATCCTTG+TGG - chr2.4:54565779-54565798 MS.gene073377:CDS 40.0%
CTGCAATTTCCTGTGATGAA+AGG - chr2.4:54567178-54567197 MS.gene073377:intron 40.0%
GACCCAAAAGTTGAAGTTGA+AGG + chr2.4:54566896-54566915 None:intergenic 40.0%
GCAGAAAAGGATTGTTCCAA+GGG - chr2.4:54567147-54567166 MS.gene073377:intron 40.0%
TCAACTTATGATCCTTGTGG+TGG - chr2.4:54565782-54565801 MS.gene073377:CDS 40.0%
TCTCGGATTCGAATTAACCT+CGG + chr2.4:54566136-54566155 None:intergenic 40.0%
TCTTACCTCATCAACACCAT+TGG - chr2.4:54566351-54566370 MS.gene073377:CDS 40.0%
TGCAGAAAAGGATTGTTCCA+AGG - chr2.4:54567146-54567165 MS.gene073377:intron 40.0%
TGGAGGAAGTTAAGGGTTTA+GGG - chr2.4:54566864-54566883 MS.gene073377:intron 40.0%
TTCCTCAAACCTTTCATCAC+AGG + chr2.4:54567190-54567209 None:intergenic 40.0%
TTCCTGTGATGAAAGGTTTG+AGG - chr2.4:54567185-54567204 MS.gene073377:intron 40.0%
TTGACAAGACCAGCTATACT+TGG - chr2.4:54566818-54566837 MS.gene073377:intron 40.0%
TTGGAGGAAGTTAAGGGTTT+AGG - chr2.4:54566863-54566882 MS.gene073377:intron 40.0%
! CCACAAGGATCATAAGTTGA+TGG + chr2.4:54565782-54565801 None:intergenic 40.0%
! GACCCTTCAACTTCAACTTT+TGG - chr2.4:54566890-54566909 MS.gene073377:intron 40.0%
! GGAGCCAAAAGTGTAGAATT+AGG - chr2.4:54566169-54566188 MS.gene073377:CDS 40.0%
!! GAGGGGTTGATAATGATTTG+TGG + chr2.4:54566272-54566291 None:intergenic 40.0%
!! GGGGTTGATAATGATTTGTG+GGG + chr2.4:54566270-54566289 None:intergenic 40.0%
!! GGGTTGATAATGATTTGTGG+GGG + chr2.4:54566269-54566288 None:intergenic 40.0%
!! TTCAACTTTTGGGTCAGCTT+TGG - chr2.4:54566901-54566920 MS.gene073377:intron 40.0%
AATTGCAGAACCAATGCCCT+TGG + chr2.4:54567166-54567185 None:intergenic 45.0%
AGCAAACGGTTCAACTAAGC+TGG + chr2.4:54567221-54567240 None:intergenic 45.0%
CATGTCAATGTTCTCCTCAG+TGG + chr2.4:54567341-54567360 None:intergenic 45.0%
CGTAAATCTTGCATCCACTG+AGG - chr2.4:54567324-54567343 MS.gene073377:CDS 45.0%
GACGGTGAATGAGTCTGATT+CGG + chr2.4:54566331-54566350 None:intergenic 45.0%
GAGGATGAAGAAGAGATGAG+CGG - chr2.4:54565837-54565856 MS.gene073377:CDS 45.0%
TGCATCTACTTGACCCTGAT+TGG - chr2.4:54566024-54566043 MS.gene073377:CDS 45.0%
TGTGGGTATCTGAGGAAAGA+AGG + chr2.4:54566520-54566539 None:intergenic 45.0%
TGTTTCACGAGGGAAACCAA+TGG + chr2.4:54566370-54566389 None:intergenic 45.0%
! AAGGATTGTTCCAAGGGCAT+TGG - chr2.4:54567153-54567172 MS.gene073377:intron 45.0%
! ACCAGGGATTGAAACCCTTT+TGG + chr2.4:54565728-54565747 None:intergenic 45.0%
! CCAGGGATTGAAACCCTTTT+GGG + chr2.4:54565727-54565746 None:intergenic 45.0%
! CTTTGAGAGCTGTTTCACGA+GGG + chr2.4:54566380-54566399 None:intergenic 45.0%
!! ATGATCCTTGTGGTGGATTG+CGG - chr2.4:54565789-54565808 MS.gene073377:CDS 45.0%
!! GGAAACCAATGGTGTTGATG+AGG + chr2.4:54566359-54566378 None:intergenic 45.0%
!! GGTGTTGATGAGGTAAGAGA+CGG + chr2.4:54566349-54566368 None:intergenic 45.0%
AACCAATGTGAAGGCTACCG+AGG - chr2.4:54566116-54566135 MS.gene073377:CDS 50.0%
AACCTCGGTAGCCTTCACAT+TGG + chr2.4:54566121-54566140 None:intergenic 50.0%
ATCCTCATAGCCTCCACTTC+TGG + chr2.4:54565823-54565842 None:intergenic 50.0%
CCCAAAAGGGTTTCAATCCC+TGG - chr2.4:54565724-54565743 MS.gene073377:CDS 50.0%
GATGAAGAAGAGATGAGCGG+TGG - chr2.4:54565840-54565859 MS.gene073377:CDS 50.0%
TGAACCGTTTGCTCCGTCTA+AGG - chr2.4:54567228-54567247 MS.gene073377:intron 50.0%
TGGGAGAGAGATAACGTGTG+AGG - chr2.4:54565982-54566001 MS.gene073377:CDS 50.0%
! ATCTGAGGAAAGAAGGCGTG+TGG + chr2.4:54566513-54566532 None:intergenic 50.0%
!! GCTTTGAGAGCTGTTTCACG+AGG + chr2.4:54566381-54566400 None:intergenic 50.0%
CCTTACCGCAATCCACCACA+AGG + chr2.4:54565797-54565816 None:intergenic 55.0%
CGGCTGAGAGAGATTGAGAG+AGG - chr2.4:54565883-54565902 MS.gene073377:CDS 55.0%
TGGCTGAGAGAGGAGAAGAG+CGG - chr2.4:54565860-54565879 MS.gene073377:CDS 55.0%
!! CCTTGTGGTGGATTGCGGTA+AGG - chr2.4:54565794-54565813 MS.gene073377:CDS 55.0%
!! TGTGGTGGATTGCGGTAAGG+TGG - chr2.4:54565797-54565816 MS.gene073377:CDS 55.0%
AGATGAGCGGTGGCTGAGAG+AGG - chr2.4:54565850-54565869 MS.gene073377:CDS 60.0%
CTGAGAGAGGAGAAGAGCGG+CGG - chr2.4:54565863-54565882 MS.gene073377:CDS 60.0%
GGCCAGAAGTGGAGGCTATG+AGG - chr2.4:54565818-54565837 MS.gene073377:CDS 60.0%
GGTAAGGTGGCCAGAAGTGG+AGG - chr2.4:54565810-54565829 MS.gene073377:CDS 60.0%
TGCGGTAAGGTGGCCAGAAG+TGG - chr2.4:54565807-54565826 MS.gene073377:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 54565717 54567375 54565717 ID=MS.gene073377
chr2.4 mRNA 54565717 54567375 54565717 ID=MS.gene073377.t1;Parent=MS.gene073377
chr2.4 exon 54567234 54567375 54567234 ID=MS.gene073377.t1.exon1;Parent=MS.gene073377.t1
chr2.4 CDS 54567234 54567375 54567234 ID=cds.MS.gene073377.t1;Parent=MS.gene073377.t1
chr2.4 exon 54565717 54566513 54565717 ID=MS.gene073377.t1.exon2;Parent=MS.gene073377.t1
chr2.4 CDS 54565717 54566513 54565717 ID=cds.MS.gene073377.t1;Parent=MS.gene073377.t1
Gene Sequence

>MS.gene073377

ATGAAAACCCAAAAGGGTTTCAATCCCTGGTTTTCACATGAATTCTCTTTTGGATATGCTCACCATCAACTTATGATCCTTGTGGTGGATTGCGGTAAGGTGGCCAGAAGTGGAGGCTATGAGGATGAAGAAGAGATGAGCGGTGGCTGAGAGAGGAGAAGAGCGGCGGCTGAGAGAGATTGAGAGAGGAGCAACCATGAAGAGAAAATGAGAAAACATGAAGTAGAAGAAGTTTTAGATAAATGAAGAAGTTTTAGAGAAAACGTGGGAGAGAGATAACGTGTGAGGATTTTTTGAGTGTAGTATATGCATCTACTTGACCCTGATTGGTTATTGATATGTTAGATATAGAAAACAGGCTAAAATTTAATGTGGCTGGGAAGTTCAATAGTTAGAGTAAACCAATGTGAAGGCTACCGAGGTTAATTCGAATCCGAGAATTTTCAAATGTTGGAGCCAAAAGTGTAGAATTAGGGTTTTCAAATTAGGTTAACATTGTTTGCTAGGATTAGATATAAAGGATTACAATCATTACAGAGCAATTATTATCCCCCACAAATCATTATCAACCCCTCTTTTCCCATTCCAATTTTCCAACAAATTCACAACTTCCGAATCAGACTCATTCACCGTCTCTTACCTCATCAACACCATTGGTTTCCCTCGTGAAACAGCTCTCAAAGCTTCAAAACGACTTCGTTTCAACTCTCCTCAAAAGCCCAATTCATTTTTCACTTTCTTCACAAACCTTGGTTTTTCAGATTCCAATATACGCAGCATTATCATAAAACAACCACACGCCTTCTTTCCTCAGATACCCACAATTCAATTCTTCCAAAGTTTCAATTTTTTCTATCTAAAGGCGCTTCAGCTTCTGAAATCGCGTGTTTGTTAGCAGCGAATCCTAGAATTTTACAGAATAGTTTGGAGAATAGAATAATTCCTCTTTTTGAATTTTATAAGAGGTTTTTTAAATCTGATAAAGCTACAATTTGTTGCATCATTCCAAATTTGATATCTTTGCCTTACAATCTTACTACTGTTAATGTTAAGTTATTGATTGACTATGGAGTTTGTGATTCCGCTATTGCTAGATTGCTTTTGACAAGACCAGCTATACTTGGATCAATTGATTTCCTTAGTACTTTGGAGGAAGTTAAGGGTTTAGGGTTTGACCCTTCAACTTCAACTTTTGGGTCAGCTTTGGTTGCAAAGAAATGTATGAGTAAAACACTTTGGGATGAGAAAGTTGATGTTTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTATTCGTGCATTTAGAGGTCGTCCTGACTTGTTGTTGACTTCAATTGATAAGATTAATTTGGTGTTGAGTTTTTGGGTTAATCAATTGGGTTGGAATTCTTCGGCACTTTCTAAAAGGCCACGTATTTTTAGTTACAGTTTGCAGAAAAGGATTGTTCCAAGGGCATTGGTTCTGCAATTTCCTGTGATGAAAGGTTTGAGGAAAAAGAATGCCAGCTTAGTTGAACCGTTTGCTCCGTCTAAGGAAATGTTCCTAAGCAAATATGTTCTCAGTTTTAAGGAGGATTCTGATTATTTATTAAAGCTTTATGAGGAAAACGTAAATCTTGCATCCACTGAGGAGAACATTGACATGCCATTCACCAAATAG
Protein sequence

>MS.gene073377.t1

MKTQKGFNPWFSHEFSFGYAHHQLMILVVDCGKVARSGGYEDEEEMSGASASEIACLLAANPRILQNSLENRIIPLFEFYKRFFKSDKATICCIIPNLISLPYNLTTVNVKLLIDYGVCDSAIARLLLTRPAILGSIDFLSTLEEVKGLGFDPSTSTFGSALVAKKCMSKTLWDEKVDVFKKWGWSDEDVIRAFRGRPDLLLTSIDKINLVLSFWVNQLGWNSSALSKRPRIFSYSLQKRIVPRALVLQFPVMKGLRKKNASLVEPFAPSKEMFLSKYVLSFKEDSDYLLKLYEENVNLASTEENIDMPFTK