Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073563.t1 | RHN78869.1 | 88.9 | 558 | 38 | 1 | 1 | 558 | 14 | 547 | 1.00E-287 | 998.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073563.t1 | O82175 | 40.3 | 534 | 263 | 15 | 34 | 557 | 307 | 794 | 7.6e-95 | 349.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073563.t1 | A0A072VTA4 | 88.9 | 558 | 38 | 1 | 1 | 558 | 1 | 534 | 7.2e-288 | 998.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene073563.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073563.t1 | MTR_1g048950 | 89.785 | 558 | 33 | 1 | 1 | 558 | 1 | 534 | 0.0 | 994 |
MS.gene073563.t1 | MTR_5g013420 | 39.609 | 563 | 258 | 11 | 28 | 557 | 576 | 1089 | 9.07e-114 | 363 |
MS.gene073563.t1 | MTR_5g013420 | 39.609 | 563 | 258 | 11 | 28 | 557 | 576 | 1089 | 3.75e-113 | 362 |
MS.gene073563.t1 | MTR_4g010830 | 38.819 | 559 | 260 | 11 | 32 | 557 | 471 | 980 | 4.39e-108 | 346 |
MS.gene073563.t1 | MTR_4g010550 | 37.812 | 521 | 240 | 11 | 56 | 557 | 9 | 464 | 4.21e-98 | 306 |
MS.gene073563.t1 | MTR_7g088370 | 32.117 | 548 | 297 | 16 | 34 | 554 | 203 | 702 | 1.90e-72 | 245 |
MS.gene073563.t1 | MTR_8g042750 | 31.150 | 565 | 299 | 10 | 34 | 554 | 167 | 685 | 7.81e-72 | 243 |
MS.gene073563.t1 | MTR_3g011440 | 33.205 | 518 | 255 | 15 | 85 | 556 | 191 | 663 | 1.09e-71 | 242 |
MS.gene073563.t1 | MTR_6g061200 | 32.927 | 492 | 268 | 13 | 87 | 557 | 215 | 665 | 2.71e-69 | 236 |
MS.gene073563.t1 | MTR_6g061270 | 31.579 | 551 | 287 | 14 | 56 | 557 | 185 | 694 | 6.78e-69 | 235 |
MS.gene073563.t1 | MTR_7g084090 | 31.444 | 547 | 276 | 15 | 65 | 557 | 256 | 757 | 1.09e-68 | 236 |
MS.gene073563.t1 | MTR_7g450730 | 31.349 | 571 | 247 | 17 | 9 | 557 | 58 | 505 | 6.94e-64 | 218 |
MS.gene073563.t1 | MTR_1g035420 | 31.380 | 529 | 281 | 13 | 44 | 531 | 157 | 644 | 3.03e-63 | 219 |
MS.gene073563.t1 | MTR_8g070075 | 31.000 | 500 | 270 | 14 | 67 | 531 | 289 | 748 | 3.24e-63 | 221 |
MS.gene073563.t1 | MTR_7g445710 | 30.678 | 590 | 248 | 19 | 18 | 557 | 65 | 543 | 7.85e-62 | 213 |
MS.gene073563.t1 | MTR_8g071030 | 31.944 | 504 | 266 | 15 | 64 | 531 | 273 | 735 | 2.37e-61 | 216 |
MS.gene073563.t1 | MTR_8g070070 | 32.186 | 494 | 260 | 13 | 73 | 531 | 302 | 755 | 2.87e-61 | 216 |
MS.gene073563.t1 | MTR_7g445530 | 30.714 | 560 | 232 | 17 | 18 | 532 | 65 | 513 | 4.55e-59 | 205 |
MS.gene073563.t1 | MTR_6g044690 | 32.091 | 483 | 239 | 15 | 88 | 531 | 130 | 562 | 5.51e-56 | 197 |
MS.gene073563.t1 | MTR_1g035400 | 30.966 | 507 | 262 | 17 | 66 | 531 | 104 | 563 | 5.68e-53 | 190 |
MS.gene073563.t1 | MTR_7g084090 | 32.447 | 376 | 192 | 9 | 88 | 445 | 278 | 609 | 2.72e-51 | 186 |
MS.gene073563.t1 | MTR_6g043960 | 29.400 | 483 | 231 | 16 | 88 | 531 | 69 | 480 | 3.56e-46 | 169 |
MS.gene073563.t1 | MTR_0376s0030 | 27.879 | 495 | 275 | 14 | 88 | 547 | 130 | 577 | 8.96e-45 | 167 |
MS.gene073563.t1 | MTR_2g054460 | 28.992 | 476 | 214 | 15 | 88 | 531 | 79 | 462 | 1.24e-42 | 159 |
MS.gene073563.t1 | MTR_7g052480 | 31.699 | 306 | 167 | 8 | 290 | 557 | 255 | 556 | 4.00e-37 | 145 |
MS.gene073563.t1 | MTR_5g018850 | 31.778 | 343 | 178 | 10 | 268 | 557 | 1168 | 1507 | 6.55e-34 | 138 |
MS.gene073563.t1 | MTR_8g078490 | 30.581 | 327 | 171 | 10 | 277 | 557 | 937 | 1253 | 8.35e-34 | 137 |
MS.gene073563.t1 | MTR_7g445600 | 46.512 | 129 | 57 | 2 | 404 | 532 | 240 | 356 | 1.05e-33 | 131 |
MS.gene073563.t1 | MTR_7g445600 | 34.225 | 187 | 99 | 8 | 18 | 200 | 61 | 227 | 2.97e-15 | 77.8 |
MS.gene073563.t1 | MTR_8g078505 | 32.313 | 294 | 154 | 9 | 299 | 552 | 245 | 533 | 2.34e-32 | 131 |
MS.gene073563.t1 | MTR_4g132610 | 37.811 | 201 | 104 | 6 | 373 | 557 | 852 | 1047 | 3.33e-30 | 126 |
MS.gene073563.t1 | MTR_1g069570 | 29.299 | 314 | 157 | 10 | 304 | 552 | 428 | 741 | 1.05e-25 | 112 |
MS.gene073563.t1 | MTR_1g080340 | 29.693 | 293 | 140 | 10 | 304 | 531 | 267 | 558 | 1.38e-24 | 108 |
MS.gene073563.t1 | MTR_7g098390 | 25.750 | 400 | 191 | 15 | 244 | 552 | 313 | 697 | 1.02e-19 | 93.6 |
MS.gene073563.t1 | MTR_1g098000 | 36.000 | 175 | 84 | 7 | 392 | 553 | 72 | 231 | 1.15e-18 | 89.4 |
MS.gene073563.t1 | MTR_1g069570 | 28.514 | 249 | 116 | 8 | 304 | 490 | 428 | 676 | 1.27e-18 | 90.1 |
MS.gene073563.t1 | MTR_1g098370 | 35.429 | 175 | 85 | 7 | 392 | 553 | 75 | 234 | 6.17e-18 | 87.4 |
MS.gene073563.t1 | MTR_6g027690 | 29.075 | 227 | 123 | 8 | 347 | 556 | 214 | 419 | 2.70e-17 | 84.7 |
MS.gene073563.t1 | MTR_3g088625 | 32.530 | 166 | 100 | 4 | 396 | 556 | 1200 | 1358 | 6.12e-16 | 82.0 |
MS.gene073563.t1 | MTR_3g088625 | 33.333 | 168 | 96 | 4 | 396 | 556 | 1306 | 1464 | 6.79e-16 | 82.0 |
MS.gene073563.t1 | MTR_0071s0100 | 33.939 | 165 | 97 | 5 | 393 | 554 | 191 | 346 | 2.09e-15 | 78.6 |
MS.gene073563.t1 | MTR_1g012910 | 35.862 | 145 | 79 | 5 | 416 | 552 | 528 | 666 | 3.67e-14 | 75.9 |
MS.gene073563.t1 | MTR_1g012910 | 35.862 | 145 | 79 | 5 | 416 | 552 | 365 | 503 | 4.54e-14 | 75.1 |
MS.gene073563.t1 | MTR_7g445810 | 33.333 | 195 | 105 | 9 | 33 | 225 | 94 | 265 | 4.77e-14 | 73.2 |
MS.gene073563.t1 | MTR_6g059310 | 29.480 | 173 | 100 | 5 | 389 | 552 | 87 | 246 | 7.48e-14 | 73.6 |
MS.gene073563.t1 | MTR_6g059310 | 29.480 | 173 | 100 | 5 | 389 | 552 | 87 | 246 | 8.36e-14 | 73.6 |
MS.gene073563.t1 | MTR_1g012890 | 33.793 | 145 | 82 | 5 | 416 | 552 | 225 | 363 | 2.61e-12 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073563.t1 | AT2G35160 | 40.449 | 534 | 262 | 15 | 34 | 557 | 271 | 758 | 2.14e-113 | 354 |
MS.gene073563.t1 | AT2G35160 | 40.449 | 534 | 262 | 15 | 34 | 557 | 307 | 794 | 4.56e-113 | 355 |
MS.gene073563.t1 | AT2G35160 | 40.449 | 534 | 262 | 15 | 34 | 557 | 307 | 794 | 4.56e-113 | 355 |
MS.gene073563.t1 | AT2G35160 | 40.449 | 534 | 262 | 15 | 34 | 557 | 307 | 794 | 4.56e-113 | 355 |
MS.gene073563.t1 | AT2G35160 | 40.449 | 534 | 262 | 15 | 34 | 557 | 307 | 794 | 4.56e-113 | 355 |
MS.gene073563.t1 | AT2G22740 | 35.025 | 611 | 292 | 15 | 3 | 557 | 229 | 790 | 6.45e-95 | 307 |
MS.gene073563.t1 | AT2G22740 | 35.025 | 611 | 292 | 15 | 3 | 557 | 229 | 790 | 6.45e-95 | 307 |
MS.gene073563.t1 | AT1G73100 | 32.685 | 514 | 257 | 14 | 85 | 556 | 202 | 668 | 1.16e-70 | 239 |
MS.gene073563.t1 | AT5G04940 | 33.008 | 512 | 256 | 14 | 85 | 556 | 205 | 669 | 9.98e-69 | 234 |
MS.gene073563.t1 | AT5G04940 | 33.008 | 512 | 256 | 14 | 85 | 556 | 205 | 669 | 9.98e-69 | 234 |
MS.gene073563.t1 | AT2G33290 | 31.569 | 548 | 295 | 15 | 34 | 547 | 149 | 650 | 8.08e-64 | 221 |
MS.gene073563.t1 | AT2G33290 | 31.569 | 548 | 295 | 15 | 34 | 547 | 149 | 650 | 8.08e-64 | 221 |
MS.gene073563.t1 | AT2G33290 | 31.569 | 548 | 295 | 15 | 34 | 547 | 149 | 650 | 8.08e-64 | 221 |
MS.gene073563.t1 | AT2G33290 | 31.569 | 548 | 295 | 15 | 34 | 547 | 149 | 650 | 8.08e-64 | 221 |
MS.gene073563.t1 | AT5G13960 | 31.141 | 517 | 271 | 15 | 88 | 557 | 12 | 490 | 2.13e-61 | 210 |
MS.gene073563.t1 | AT5G13960 | 30.756 | 569 | 299 | 18 | 36 | 557 | 104 | 624 | 6.76e-61 | 212 |
MS.gene073563.t1 | AT4G13460 | 30.241 | 539 | 288 | 15 | 34 | 531 | 145 | 636 | 5.42e-59 | 207 |
MS.gene073563.t1 | AT4G13460 | 30.241 | 539 | 288 | 15 | 34 | 531 | 145 | 636 | 5.42e-59 | 207 |
MS.gene073563.t1 | AT1G17770 | 30.588 | 510 | 278 | 17 | 85 | 556 | 221 | 692 | 2.24e-55 | 198 |
MS.gene073563.t1 | AT2G24740 | 30.059 | 509 | 261 | 16 | 85 | 556 | 304 | 754 | 6.15e-51 | 187 |
MS.gene073563.t1 | AT2G23740 | 33.439 | 314 | 163 | 10 | 280 | 554 | 1066 | 1372 | 4.67e-35 | 141 |
MS.gene073563.t1 | AT2G23740 | 33.439 | 314 | 163 | 10 | 280 | 554 | 1073 | 1379 | 5.32e-35 | 141 |
MS.gene073563.t1 | AT2G23740 | 33.439 | 314 | 163 | 10 | 280 | 554 | 1073 | 1379 | 5.32e-35 | 141 |
MS.gene073563.t1 | AT2G23740 | 33.439 | 314 | 163 | 10 | 280 | 554 | 1073 | 1379 | 5.32e-35 | 141 |
MS.gene073563.t1 | AT5G47150 | 38.889 | 216 | 121 | 4 | 34 | 247 | 118 | 324 | 2.80e-30 | 121 |
MS.gene073563.t1 | AT5G47160 | 35.833 | 240 | 134 | 4 | 10 | 243 | 182 | 407 | 1.63e-27 | 115 |
MS.gene073563.t1 | AT5G47160 | 35.833 | 240 | 134 | 4 | 10 | 243 | 182 | 407 | 1.63e-27 | 115 |
MS.gene073563.t1 | AT5G47160 | 35.833 | 240 | 134 | 4 | 10 | 243 | 182 | 407 | 1.63e-27 | 115 |
MS.gene073563.t1 | AT3G04380 | 26.744 | 430 | 213 | 19 | 201 | 552 | 36 | 441 | 1.19e-23 | 104 |
MS.gene073563.t1 | AT3G04380 | 26.744 | 430 | 213 | 19 | 201 | 552 | 52 | 457 | 1.68e-23 | 104 |
MS.gene073563.t1 | AT3G04380 | 26.744 | 430 | 213 | 19 | 201 | 552 | 52 | 457 | 1.86e-23 | 104 |
MS.gene073563.t1 | AT3G04380 | 28.529 | 333 | 169 | 13 | 287 | 552 | 84 | 414 | 8.56e-23 | 101 |
MS.gene073563.t1 | AT3G04380 | 28.529 | 333 | 169 | 13 | 287 | 552 | 100 | 430 | 8.93e-23 | 102 |
MS.gene073563.t1 | AT2G23740 | 32.530 | 249 | 123 | 9 | 280 | 490 | 1073 | 1314 | 1.00e-22 | 103 |
MS.gene073563.t1 | AT2G23740 | 32.530 | 249 | 123 | 9 | 280 | 490 | 1073 | 1314 | 1.00e-22 | 103 |
MS.gene073563.t1 | AT3G04380 | 28.529 | 333 | 169 | 13 | 287 | 552 | 100 | 430 | 1.24e-22 | 101 |
MS.gene073563.t1 | AT3G03750 | 33.696 | 184 | 100 | 4 | 392 | 556 | 169 | 349 | 6.59e-21 | 94.7 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 523 | 704 | 1.37e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 523 | 704 | 1.37e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 500 | 681 | 1.49e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 500 | 681 | 1.49e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 500 | 681 | 1.49e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 500 | 681 | 1.49e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 520 | 701 | 1.54e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 520 | 701 | 1.54e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 520 | 701 | 1.54e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 520 | 701 | 1.54e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 543 | 724 | 1.68e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 543 | 724 | 1.68e-20 | 96.3 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 451 | 632 | 1.76e-20 | 95.9 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 451 | 632 | 1.76e-20 | 95.9 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 451 | 632 | 1.76e-20 | 95.9 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 451 | 632 | 1.76e-20 | 95.9 |
MS.gene073563.t1 | AT5G43990 | 34.973 | 183 | 104 | 7 | 384 | 552 | 431 | 612 | 1.83e-20 | 95.9 |
MS.gene073563.t1 | AT1G04050 | 32.447 | 188 | 109 | 6 | 384 | 555 | 536 | 721 | 9.32e-19 | 90.5 |
MS.gene073563.t1 | AT1G04050 | 32.447 | 188 | 109 | 6 | 384 | 555 | 536 | 721 | 9.32e-19 | 90.5 |
MS.gene073563.t1 | AT1G04050 | 32.447 | 188 | 109 | 6 | 384 | 555 | 432 | 617 | 1.12e-18 | 90.1 |
MS.gene073563.t1 | AT1G77300 | 30.952 | 168 | 100 | 4 | 396 | 556 | 1008 | 1166 | 1.78e-15 | 80.9 |
MS.gene073563.t1 | AT1G77300 | 30.952 | 168 | 100 | 4 | 396 | 556 | 1008 | 1166 | 1.82e-15 | 80.5 |
MS.gene073563.t1 | AT3G03750 | 33.728 | 169 | 104 | 4 | 392 | 556 | 169 | 333 | 2.32e-15 | 78.2 |
MS.gene073563.t1 | AT4G30860 | 28.631 | 241 | 130 | 8 | 321 | 556 | 261 | 464 | 1.52e-13 | 73.6 |
MS.gene073563.t1 | AT1G76710 | 31.395 | 172 | 98 | 7 | 392 | 554 | 66 | 226 | 2.70e-13 | 72.8 |
MS.gene073563.t1 | AT1G76710 | 31.395 | 172 | 98 | 7 | 392 | 554 | 66 | 226 | 2.70e-13 | 72.8 |
MS.gene073563.t1 | AT1G76710 | 31.395 | 172 | 98 | 7 | 392 | 554 | 66 | 226 | 2.81e-13 | 72.8 |
MS.gene073563.t1 | AT1G76710 | 31.395 | 172 | 98 | 7 | 392 | 554 | 66 | 226 | 2.89e-13 | 72.8 |
MS.gene073563.t1 | AT3G59960 | 30.539 | 167 | 94 | 4 | 399 | 556 | 96 | 249 | 5.30e-11 | 64.3 |
MS.gene073563.t1 | AT3G59960 | 30.539 | 167 | 94 | 4 | 399 | 556 | 96 | 249 | 5.30e-11 | 64.3 |
MS.gene073563.t1 | AT3G59960 | 30.539 | 167 | 94 | 4 | 399 | 556 | 96 | 249 | 5.30e-11 | 64.3 |
MS.gene073563.t1 | AT5G42400 | 30.201 | 149 | 86 | 5 | 415 | 556 | 1250 | 1387 | 6.17e-11 | 66.2 |
MS.gene073563.t1 | AT5G42400 | 30.201 | 149 | 86 | 5 | 415 | 556 | 1250 | 1387 | 6.17e-11 | 66.2 |
MS.gene073563.t1 | AT5G42400 | 30.201 | 149 | 86 | 5 | 415 | 556 | 1250 | 1387 | 6.17e-11 | 66.2 |
MS.gene073563.t1 | AT5G42400 | 30.201 | 149 | 86 | 5 | 415 | 556 | 1250 | 1387 | 6.17e-11 | 66.2 |
MS.gene073563.t1 | AT5G42400 | 30.201 | 149 | 86 | 5 | 415 | 556 | 1250 | 1387 | 6.17e-11 | 66.2 |
MS.gene073563.t1 | AT5G42400 | 30.201 | 149 | 86 | 5 | 415 | 556 | 1250 | 1387 | 6.17e-11 | 66.2 |
MS.gene073563.t1 | AT5G42400 | 30.201 | 149 | 86 | 5 | 415 | 556 | 1250 | 1387 | 6.17e-11 | 66.2 |
MS.gene073563.t1 | AT5G42400 | 30.201 | 149 | 86 | 5 | 415 | 556 | 1250 | 1387 | 6.17e-11 | 66.2 |
MS.gene073563.t1 | AT3G59960 | 30.539 | 167 | 94 | 4 | 399 | 556 | 96 | 249 | 9.79e-11 | 63.9 |
Find 129 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCATGTGGTATCGATTATT+TGG | 0.102559 | 1.1:+33778716 | MS.gene073563:CDS |
TACATGCCCTATTCTCTTTC+CGG | 0.210201 | 1.1:-33778622 | None:intergenic |
ATGCAAAGTTCAAAATCTTT+TGG | 0.219974 | 1.1:+33778366 | MS.gene073563:CDS |
TAAAATTGAAAGCAAAATTA+AGG | 0.224504 | 1.1:+33778547 | MS.gene073563:CDS |
GCGACACCGTCCCTTATATT+AGG | 0.242119 | 1.1:-33778843 | None:intergenic |
CTTCAGAATTGTGTCTCTTC+TGG | 0.280628 | 1.1:-33779145 | None:intergenic |
GGTATCTCCACATAGCTTAT+AGG | 0.280802 | 1.1:-33779326 | None:intergenic |
TCCTGTTAGGGTTATATTGC+AGG | 0.288637 | 1.1:+33778929 | MS.gene073563:CDS |
GTTTGTGCTTAAGAAAATTC+AGG | 0.305686 | 1.1:+33779079 | MS.gene073563:CDS |
GTTCGGCCCTATATTGAAAT+TGG | 0.307938 | 1.1:-33778665 | None:intergenic |
AGTATTGAACGATTCGTCTT+TGG | 0.310118 | 1.1:-33779383 | None:intergenic |
GTATCGATTATTTGGGTAAA+GGG | 0.327727 | 1.1:+33778724 | MS.gene073563:CDS |
TGTTCGAATCAATGATATTT+CGG | 0.328396 | 1.1:+33779268 | MS.gene073563:CDS |
TGTTTCCCCTCGAGATGTTA+TGG | 0.333335 | 1.1:+33779115 | MS.gene073563:CDS |
ACTAGGTAACAGAAGGGTTT+AGG | 0.342127 | 1.1:-33779347 | None:intergenic |
CGCGCCTCATGATCAGAAAT+TGG | 0.347176 | 1.1:+33778863 | MS.gene073563:CDS |
ACTCGAGTAAGAGGACAATT+TGG | 0.352436 | 1.1:+33779041 | MS.gene073563:CDS |
TGGTGACCAATTTCAATATA+GGG | 0.354159 | 1.1:+33778659 | MS.gene073563:CDS |
CGCGCGGAAATCTTGCTTTG+TGG | 0.366478 | 1.1:+33778886 | MS.gene073563:CDS |
ATATAAAGGATGATTTCATT+TGG | 0.370033 | 1.1:-33779514 | None:intergenic |
ATGGTGGTAACCCTAATATA+AGG | 0.370183 | 1.1:+33778832 | MS.gene073563:CDS |
ATAGGTGTCACCACCCGAAT+AGG | 0.370547 | 1.1:-33779308 | None:intergenic |
TATAAAGGATGATTTCATTT+GGG | 0.376053 | 1.1:-33779513 | None:intergenic |
ACCTGCAATATAACCCTAAC+AGG | 0.380684 | 1.1:-33778930 | None:intergenic |
GGGTAAAGGGGAGGGTTCTT+TGG | 0.380696 | 1.1:+33778737 | MS.gene073563:CDS |
TCTGGTTGTTTGCTTTATGA+AGG | 0.381509 | 1.1:+33778807 | MS.gene073563:CDS |
AATTTGCTACTGTGGTTCAT+TGG | 0.383046 | 1.1:+33780083 | MS.gene073563:CDS |
TGAATGCGGGGAGTCCTGTT+AGG | 0.386175 | 1.1:+33778916 | MS.gene073563:CDS |
GCAAAGAAAAGTTCCCTATT+CGG | 0.386328 | 1.1:+33779294 | MS.gene073563:CDS |
CGACACCGTCCCTTATATTA+GGG | 0.395566 | 1.1:-33778842 | None:intergenic |
TCTTATTCATACATATATGA+TGG | 0.403540 | 1.1:+33778996 | MS.gene073563:CDS |
TTGGTGACCAATTTCAATAT+AGG | 0.405625 | 1.1:+33778658 | MS.gene073563:CDS |
CAAAGAAAAGTTCCCTATTC+GGG | 0.406699 | 1.1:+33779295 | MS.gene073563:CDS |
GTTTCCCCTCGAGATGTTAT+GGG | 0.409974 | 1.1:+33779116 | MS.gene073563:CDS |
GCGAATGTTATGAAGTCTTC+TGG | 0.411419 | 1.1:+33778789 | MS.gene073563:CDS |
AAAATTGAAAGCAAAATTAA+GGG | 0.414139 | 1.1:+33778548 | MS.gene073563:CDS |
GATGAGTATACAATTAATAT+AGG | 0.418381 | 1.1:+33779749 | MS.gene073563:CDS |
AGGGCCACACTCATATATAA+AGG | 0.421860 | 1.1:-33779528 | None:intergenic |
CTTCATAAACCTTGTAGCTT+CGG | 0.427305 | 1.1:-33778577 | None:intergenic |
TCATGTGGTATCGATTATTT+GGG | 0.431263 | 1.1:+33778717 | MS.gene073563:CDS |
AAGACGAATCGTTCAATACT+AGG | 0.431282 | 1.1:+33779386 | MS.gene073563:CDS |
ACATCTTTCACAACTAGGTT+AGG | 0.431941 | 1.1:-33779934 | None:intergenic |
CAAAATGTTGTTTGCTACAA+AGG | 0.440548 | 1.1:+33779990 | MS.gene073563:CDS |
GAGCTCACACACAAAGCTTC+CGG | 0.447492 | 1.1:-33779672 | None:intergenic |
GAAAACACCGGAAAGAGAAT+AGG | 0.449177 | 1.1:+33778615 | MS.gene073563:CDS |
AGGGCCGAACTTATTGTAAT+CGG | 0.452930 | 1.1:+33778678 | MS.gene073563:CDS |
AAAACACCGGAAAGAGAATA+GGG | 0.465297 | 1.1:+33778616 | MS.gene073563:CDS |
GATTATTTGGGTAAAGGGGA+GGG | 0.467741 | 1.1:+33778729 | MS.gene073563:CDS |
AATCTTCAAAACAAAATTGA+AGG | 0.468829 | 1.1:+33779616 | MS.gene073563:CDS |
AAGAGAATAGGGCATGTAGA+TGG | 0.472138 | 1.1:+33778627 | MS.gene073563:CDS |
GGTATCGATTATTTGGGTAA+AGG | 0.478346 | 1.1:+33778723 | MS.gene073563:CDS |
GACAATGTGACTCGAGTAAG+AGG | 0.478502 | 1.1:+33779032 | MS.gene073563:CDS |
TTATGAAGGCGAAACGTCAA+TGG | 0.484134 | 1.1:+33778592 | MS.gene073563:CDS |
TTCAAGTTGGAACTGAATAC+CGG | 0.487311 | 1.1:-33779594 | None:intergenic |
TAGGTGTCACCACCCGAATA+GGG | 0.488457 | 1.1:-33779307 | None:intergenic |
TACCACATGAGTGTTGTTGA+TGG | 0.494297 | 1.1:-33778704 | None:intergenic |
TAAGAAAATTCAGGACCAAC+CGG | 0.497017 | 1.1:+33779088 | MS.gene073563:CDS |
CTTATTCATACATATATGAT+GGG | 0.498680 | 1.1:+33778997 | MS.gene073563:CDS |
ATTGATTCGAACAACATCCT+TGG | 0.502629 | 1.1:-33779258 | None:intergenic |
CGATTATTTGGGTAAAGGGG+AGG | 0.503266 | 1.1:+33778728 | MS.gene073563:CDS |
AGCTTTGTGTGTGAGCTCAT+TGG | 0.503294 | 1.1:+33779677 | MS.gene073563:CDS |
TTCATTGATGCAACGCGACA+TGG | 0.503420 | 1.1:+33779877 | MS.gene073563:CDS |
ACATAACATCTTTCACAACT+AGG | 0.508844 | 1.1:-33779939 | None:intergenic |
CAAAACAAAATTGAAGGGGT+GGG | 0.513316 | 1.1:+33779622 | MS.gene073563:CDS |
GGGCTTTAGCCGAAGCTACA+AGG | 0.516710 | 1.1:+33778568 | MS.gene073563:CDS |
ATGGACAAATCTACATTTGA+AGG | 0.517049 | 1.1:+33780112 | MS.gene073563:CDS |
ACGAGGAACACAAGCAAGAA+GGG | 0.521209 | 1.1:-33779547 | None:intergenic |
ATCAGCCGAGTGAGTCAATC+CGG | 0.522206 | 1.1:+33779575 | MS.gene073563:CDS |
TTGGGAGAAAGCGTGAAGAA+TGG | 0.523029 | 1.1:+33778385 | MS.gene073563:CDS |
GACGAGGAACACAAGCAAGA+AGG | 0.525389 | 1.1:-33779548 | None:intergenic |
ACACGCTCTTTCATTCCATC+CGG | 0.526296 | 1.1:+33779653 | MS.gene073563:CDS |
TGGTGGTAACCCTAATATAA+GGG | 0.526528 | 1.1:+33778833 | MS.gene073563:CDS |
AAACATTCTTTGGGAGAACA+TGG | 0.531170 | 1.1:-33779169 | None:intergenic |
CATGTAGATGGAATTGAAGT+TGG | 0.532327 | 1.1:+33778639 | MS.gene073563:CDS |
TTGAGTAAAATTTGCTACTG+TGG | 0.533623 | 1.1:+33780075 | MS.gene073563:CDS |
GAATGCGGGGAGTCCTGTTA+GGG | 0.541817 | 1.1:+33778917 | MS.gene073563:CDS |
GAGACCGATTACAATAAGTT+CGG | 0.543201 | 1.1:-33778682 | None:intergenic |
GCAACGCGACATGGAAACAT+TGG | 0.543624 | 1.1:+33779886 | MS.gene073563:CDS |
TCAAAACAAAATTGAAGGGG+TGG | 0.543766 | 1.1:+33779621 | MS.gene073563:CDS |
CGAAGCTACAAGGTTTATGA+AGG | 0.543860 | 1.1:+33778578 | MS.gene073563:CDS |
ATCTTCAAAACAAAATTGAA+GGG | 0.544882 | 1.1:+33779617 | MS.gene073563:CDS |
CGCGCCAATTTCTGATCATG+AGG | 0.548143 | 1.1:-33778867 | None:intergenic |
TATGAAGGCGAAACGTCAAT+GGG | 0.552062 | 1.1:+33778593 | MS.gene073563:CDS |
AAAACAAAATTGAAGGGGTG+GGG | 0.557230 | 1.1:+33779623 | MS.gene073563:CDS |
TAGAGGTCTTGTTCTCTCCA+AGG | 0.558562 | 1.1:+33779241 | MS.gene073563:CDS |
TCTATGAGTTACAACAATGC+TGG | 0.561265 | 1.1:-33778763 | None:intergenic |
CATATTGACTAGGTAACAGA+AGG | 0.563235 | 1.1:-33779354 | None:intergenic |
TTTGCATAGCTAAGAATGGC+GGG | 0.567635 | 1.1:+33779456 | MS.gene073563:CDS |
GGCGGGACATTAGCCTATGA+TGG | 0.570158 | 1.1:+33779473 | MS.gene073563:CDS |
TTATCTTGTCAGAAGATGAA+AGG | 0.571853 | 1.1:-33778422 | None:intergenic |
CGCGACATGGAAACATTGGA+AGG | 0.575552 | 1.1:+33779890 | MS.gene073563:CDS |
TGTTTGCTTTATGAAGGTCA+TGG | 0.576682 | 1.1:+33778813 | MS.gene073563:CDS |
TTGGTTTCCATAACATCTCG+AGG | 0.577098 | 1.1:-33779194 | None:intergenic |
CGAATCAATGATATTTCGGA+GGG | 0.577253 | 1.1:+33779272 | MS.gene073563:CDS |
CAGAAGAGACACAATTCTGA+AGG | 0.581158 | 1.1:+33779146 | MS.gene073563:CDS |
TTGCTGCAAGGTGAACATCA+AGG | 0.582980 | 1.1:+33780050 | MS.gene073563:CDS |
TAACTCAGCTCTCTACCTGC+GGG | 0.583390 | 1.1:-33780018 | None:intergenic |
AATCGTTCAATACTAGGTGG+TGG | 0.591568 | 1.1:+33779392 | MS.gene073563:CDS |
TTGTGGAATAGTATGAATGC+GGG | 0.595742 | 1.1:+33778903 | MS.gene073563:CDS |
TCTCGAGGGGAAACACTAGC+CGG | 0.615076 | 1.1:-33779107 | None:intergenic |
TGTGGTTCATTGGAATGCAA+TGG | 0.618637 | 1.1:+33780093 | MS.gene073563:CDS |
TTGGATAAGTCATATTGACT+AGG | 0.621126 | 1.1:-33779364 | None:intergenic |
AAAGTTCCCATAACATCTCG+AGG | 0.623289 | 1.1:-33779122 | None:intergenic |
TGTGTTTGCATAGCTAAGAA+TGG | 0.625244 | 1.1:+33779452 | MS.gene073563:CDS |
TATCGATTATTTGGGTAAAG+GGG | 0.626149 | 1.1:+33778725 | MS.gene073563:CDS |
TCTTCAAAACAAAATTGAAG+GGG | 0.626316 | 1.1:+33779618 | MS.gene073563:CDS |
TCGAATCAATGATATTTCGG+AGG | 0.627900 | 1.1:+33779271 | MS.gene073563:CDS |
GAGGGGAAACACTAGCCGGT+TGG | 0.631704 | 1.1:-33779103 | None:intergenic |
ATAACTCAGCTCTCTACCTG+CGG | 0.634593 | 1.1:-33780019 | None:intergenic |
CACTCGGCTGATGCAAGACG+AGG | 0.637041 | 1.1:-33779564 | None:intergenic |
AAGTTCCCATAACATCTCGA+GGG | 0.638178 | 1.1:-33779121 | None:intergenic |
TCATCCTTTATATATGAGTG+TGG | 0.641509 | 1.1:+33779524 | MS.gene073563:CDS |
GGTGACACCTATAAGCTATG+TGG | 0.646281 | 1.1:+33779319 | MS.gene073563:CDS |
GCTACAAAGGACATACCCGC+AGG | 0.652394 | 1.1:+33780003 | MS.gene073563:CDS |
GGTAACCCTAATATAAGGGA+CGG | 0.664705 | 1.1:+33778837 | MS.gene073563:CDS |
CTCCATCAACAACACTCATG+TGG | 0.665071 | 1.1:+33778702 | MS.gene073563:CDS |
GAATACCGGATTGACTCACT+CGG | 0.672661 | 1.1:-33779580 | None:intergenic |
AGTTCCCATAACATCTCGAG+GGG | 0.674068 | 1.1:-33779120 | None:intergenic |
TCACACACAAAGCTTCCGGA+TGG | 0.681981 | 1.1:-33779668 | None:intergenic |
AGAAAAGTTCCCTATTCGGG+TGG | 0.682829 | 1.1:+33779298 | MS.gene073563:CDS |
AAACGTCAATGGGAAAACAC+CGG | 0.685237 | 1.1:+33778603 | MS.gene073563:CDS |
ATATTGACTAGGTAACAGAA+GGG | 0.690661 | 1.1:-33779353 | None:intergenic |
TGTGGAATAGTATGAATGCG+GGG | 0.700340 | 1.1:+33778904 | MS.gene073563:CDS |
CATGATCAGAAATTGGCGCG+CGG | 0.700635 | 1.1:+33778870 | MS.gene073563:CDS |
TTTGTGGAATAGTATGAATG+CGG | 0.704358 | 1.1:+33778902 | MS.gene073563:CDS |
TTGCTTTATGAAGGTCATGG+TGG | 0.708605 | 1.1:+33778816 | MS.gene073563:CDS |
GTTTGCATAGCTAAGAATGG+CGG | 0.718623 | 1.1:+33779455 | MS.gene073563:CDS |
TTATGATTACAATTGCTGCA+AGG | 0.726923 | 1.1:+33780038 | MS.gene073563:CDS |
ACGAATCGTTCAATACTAGG+TGG | 0.736474 | 1.1:+33779389 | MS.gene073563:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTGAAAGCAAAATTAA+GGG | + | chr1.1:33778548-33778567 | MS.gene073563:CDS | 15.0% |
!! | TAAAATTGAAAGCAAAATTA+AGG | + | chr1.1:33778547-33778566 | MS.gene073563:CDS | 15.0% |
!!! | ATAAAGCATTAACAATTTTT+AGG | + | chr1.1:33778478-33778497 | MS.gene073563:CDS | 15.0% |
!!! | TAAAGCATTAACAATTTTTA+GGG | + | chr1.1:33778479-33778498 | MS.gene073563:CDS | 15.0% |
!! | AATCTTCAAAACAAAATTGA+AGG | + | chr1.1:33779616-33779635 | MS.gene073563:CDS | 20.0% |
!! | ATATAAAGGATGATTTCATT+TGG | - | chr1.1:33779517-33779536 | None:intergenic | 20.0% |
!! | ATCTTCAAAACAAAATTGAA+GGG | + | chr1.1:33779617-33779636 | MS.gene073563:CDS | 20.0% |
!! | CTTATTCATACATATATGAT+GGG | + | chr1.1:33778997-33779016 | MS.gene073563:CDS | 20.0% |
!! | GATGAGTATACAATTAATAT+AGG | + | chr1.1:33779749-33779768 | MS.gene073563:CDS | 20.0% |
!! | TATAAAGGATGATTTCATTT+GGG | - | chr1.1:33779516-33779535 | None:intergenic | 20.0% |
!! | TCTTATTCATACATATATGA+TGG | + | chr1.1:33778996-33779015 | MS.gene073563:CDS | 20.0% |
!!! | AATTTTGCTTTCAATTTTAC+AGG | - | chr1.1:33778546-33778565 | None:intergenic | 20.0% |
! | TCTTCAAAACAAAATTGAAG+GGG | + | chr1.1:33779618-33779637 | MS.gene073563:CDS | 25.0% |
! | TGTTCGAATCAATGATATTT+CGG | + | chr1.1:33779268-33779287 | MS.gene073563:CDS | 25.0% |
!! | ATGCAAAGTTCAAAATCTTT+TGG | + | chr1.1:33778366-33778385 | MS.gene073563:CDS | 25.0% |
!! | TGATGTTTTATGCATTTTGT+AGG | + | chr1.1:33779838-33779857 | MS.gene073563:intron | 25.0% |
!! | TGCAAAGTTCAAAATCTTTT+GGG | + | chr1.1:33778367-33778386 | MS.gene073563:CDS | 25.0% |
!!! | TTGTTTTGAAGATTTCAAGT+TGG | - | chr1.1:33779610-33779629 | None:intergenic | 25.0% |
ACATAACATCTTTCACAACT+AGG | - | chr1.1:33779942-33779961 | None:intergenic | 30.0% | |
CATCTCAACAACAAAAAAGT+TGG | + | chr1.1:33779710-33779729 | MS.gene073563:CDS | 30.0% | |
GTTTGTGCTTAAGAAAATTC+AGG | + | chr1.1:33779079-33779098 | MS.gene073563:CDS | 30.0% | |
TCATCCTTTATATATGAGTG+TGG | + | chr1.1:33779524-33779543 | MS.gene073563:CDS | 30.0% | |
TGGTGACCAATTTCAATATA+GGG | + | chr1.1:33778659-33778678 | MS.gene073563:CDS | 30.0% | |
TTATCTTGTCAGAAGATGAA+AGG | - | chr1.1:33778425-33778444 | None:intergenic | 30.0% | |
TTATGATTACAATTGCTGCA+AGG | + | chr1.1:33780038-33780057 | MS.gene073563:CDS | 30.0% | |
TTTGTGGAATAGTATGAATG+CGG | + | chr1.1:33778902-33778921 | MS.gene073563:CDS | 30.0% | |
! | AAGTTTTCTGTTACCATCAT+AGG | - | chr1.1:33779489-33779508 | None:intergenic | 30.0% |
! | ATATTGACTAGGTAACAGAA+GGG | - | chr1.1:33779356-33779375 | None:intergenic | 30.0% |
! | CAAAATGTTGTTTGCTACAA+AGG | + | chr1.1:33779990-33780009 | MS.gene073563:CDS | 30.0% |
! | CTCTAGACATTTGTCTTTTT+CGG | - | chr1.1:33779226-33779245 | None:intergenic | 30.0% |
! | TATCGATTATTTGGGTAAAG+GGG | + | chr1.1:33778725-33778744 | MS.gene073563:CDS | 30.0% |
! | TGTAGCAAACAACATTTTGT+GGG | - | chr1.1:33779989-33780008 | None:intergenic | 30.0% |
! | TTCTGAAAAATCTGAAGTGA+TGG | + | chr1.1:33778953-33778972 | MS.gene073563:CDS | 30.0% |
! | TTGCTTTCAATTTTACAGGT+TGG | - | chr1.1:33778542-33778561 | None:intergenic | 30.0% |
! | TTGGATAAGTCATATTGACT+AGG | - | chr1.1:33779367-33779386 | None:intergenic | 30.0% |
! | TTGGTGACCAATTTCAATAT+AGG | + | chr1.1:33778658-33778677 | MS.gene073563:CDS | 30.0% |
! | TTGTAGCAAACAACATTTTG+TGG | - | chr1.1:33779990-33780009 | None:intergenic | 30.0% |
!! | GTATCGATTATTTGGGTAAA+GGG | + | chr1.1:33778724-33778743 | MS.gene073563:CDS | 30.0% |
!! | TCATGTGGTATCGATTATTT+GGG | + | chr1.1:33778717-33778736 | MS.gene073563:CDS | 30.0% |
!! | TTGAGTAAAATTTGCTACTG+TGG | + | chr1.1:33780075-33780094 | MS.gene073563:CDS | 30.0% |
!!! | ATATGATGGGTTGTATTTTG+TGG | + | chr1.1:33779010-33779029 | MS.gene073563:CDS | 30.0% |
!!! | TTGTCTTTTTCGGAAAGTTT+TGG | - | chr1.1:33779216-33779235 | None:intergenic | 30.0% |
AAAACAAAATTGAAGGGGTG+GGG | + | chr1.1:33779623-33779642 | MS.gene073563:CDS | 35.0% | |
AAAACACCGGAAAGAGAATA+GGG | + | chr1.1:33778616-33778635 | MS.gene073563:CDS | 35.0% | |
AAGACGAATCGTTCAATACT+AGG | + | chr1.1:33779386-33779405 | MS.gene073563:CDS | 35.0% | |
ACATCTTTCACAACTAGGTT+AGG | - | chr1.1:33779937-33779956 | None:intergenic | 35.0% | |
ATGGTGGTAACCCTAATATA+AGG | + | chr1.1:33778832-33778851 | MS.gene073563:CDS | 35.0% | |
CAAAACAAAATTGAAGGGGT+GGG | + | chr1.1:33779622-33779641 | MS.gene073563:CDS | 35.0% | |
CAAAGAAAAGTTCCCTATTC+GGG | + | chr1.1:33779295-33779314 | MS.gene073563:CDS | 35.0% | |
CATGTAGATGGAATTGAAGT+TGG | + | chr1.1:33778639-33778658 | MS.gene073563:CDS | 35.0% | |
CGAAAAAGACAAATGTCTAG+AGG | + | chr1.1:33779224-33779243 | MS.gene073563:CDS | 35.0% | |
CGAATCAATGATATTTCGGA+GGG | + | chr1.1:33779272-33779291 | MS.gene073563:CDS | 35.0% | |
CTCGAGGAAAAACATTCTTT+GGG | - | chr1.1:33779181-33779200 | None:intergenic | 35.0% | |
CTTCATAAACCTTGTAGCTT+CGG | - | chr1.1:33778580-33778599 | None:intergenic | 35.0% | |
GAGACCGATTACAATAAGTT+CGG | - | chr1.1:33778685-33778704 | None:intergenic | 35.0% | |
GCAAAGAAAAGTTCCCTATT+CGG | + | chr1.1:33779294-33779313 | MS.gene073563:CDS | 35.0% | |
TAAGAAAATTCAGGACCAAC+CGG | + | chr1.1:33779088-33779107 | MS.gene073563:CDS | 35.0% | |
TCAAAACAAAATTGAAGGGG+TGG | + | chr1.1:33779621-33779640 | MS.gene073563:CDS | 35.0% | |
TCGAATCAATGATATTTCGG+AGG | + | chr1.1:33779271-33779290 | MS.gene073563:CDS | 35.0% | |
TCTATGAGTTACAACAATGC+TGG | - | chr1.1:33778766-33778785 | None:intergenic | 35.0% | |
TCTCGAGGAAAAACATTCTT+TGG | - | chr1.1:33779182-33779201 | None:intergenic | 35.0% | |
TCTGGTTGTTTGCTTTATGA+AGG | + | chr1.1:33778807-33778826 | MS.gene073563:CDS | 35.0% | |
TGGTGGTAACCCTAATATAA+GGG | + | chr1.1:33778833-33778852 | MS.gene073563:CDS | 35.0% | |
TGTGTTTGCATAGCTAAGAA+TGG | + | chr1.1:33779452-33779471 | MS.gene073563:CDS | 35.0% | |
TGTTTGCTTTATGAAGGTCA+TGG | + | chr1.1:33778813-33778832 | MS.gene073563:CDS | 35.0% | |
TTGTGGAATAGTATGAATGC+GGG | + | chr1.1:33778903-33778922 | MS.gene073563:CDS | 35.0% | |
! | AAACATTCTTTGGGAGAACA+TGG | - | chr1.1:33779172-33779191 | None:intergenic | 35.0% |
! | AGTATTGAACGATTCGTCTT+TGG | - | chr1.1:33779386-33779405 | None:intergenic | 35.0% |
! | CATATTGACTAGGTAACAGA+AGG | - | chr1.1:33779357-33779376 | None:intergenic | 35.0% |
! | GTAGCAAACAACATTTTGTG+GGG | - | chr1.1:33779988-33780007 | None:intergenic | 35.0% |
! | TGTTTTTCCTCGAGATGTTA+TGG | + | chr1.1:33779187-33779206 | MS.gene073563:CDS | 35.0% |
!! | AATTTGCTACTGTGGTTCAT+TGG | + | chr1.1:33780083-33780102 | MS.gene073563:CDS | 35.0% |
!! | ATTGATTCGAACAACATCCT+TGG | - | chr1.1:33779261-33779280 | None:intergenic | 35.0% |
!! | CTCATGTGGTATCGATTATT+TGG | + | chr1.1:33778716-33778735 | MS.gene073563:CDS | 35.0% |
!! | GGTATCGATTATTTGGGTAA+AGG | + | chr1.1:33778723-33778742 | MS.gene073563:CDS | 35.0% |
!! | TTCAAGTTGGAACTGAATAC+CGG | - | chr1.1:33779597-33779616 | None:intergenic | 35.0% |
!!! | GTAGTGACACTGTTTTGAAA+CGG | + | chr1.1:33778445-33778464 | MS.gene073563:CDS | 35.0% |
AAACGTCAATGGGAAAACAC+CGG | + | chr1.1:33778603-33778622 | MS.gene073563:CDS | 40.0% | |
AAAGTTCCCATAACATCTCG+AGG | - | chr1.1:33779125-33779144 | None:intergenic | 40.0% | |
AAGAGAATAGGGCATGTAGA+TGG | + | chr1.1:33778627-33778646 | MS.gene073563:CDS | 40.0% | |
AAGTTCCCATAACATCTCGA+GGG | - | chr1.1:33779124-33779143 | None:intergenic | 40.0% | |
AATCGTTCAATACTAGGTGG+TGG | + | chr1.1:33779392-33779411 | MS.gene073563:CDS | 40.0% | |
ACCTGCAATATAACCCTAAC+AGG | - | chr1.1:33778933-33778952 | None:intergenic | 40.0% | |
ACGAATCGTTCAATACTAGG+TGG | + | chr1.1:33779389-33779408 | MS.gene073563:CDS | 40.0% | |
ACTAGGTAACAGAAGGGTTT+AGG | - | chr1.1:33779350-33779369 | None:intergenic | 40.0% | |
ACTCGAGTAAGAGGACAATT+TGG | + | chr1.1:33779041-33779060 | MS.gene073563:CDS | 40.0% | |
AGGGCCACACTCATATATAA+AGG | - | chr1.1:33779531-33779550 | None:intergenic | 40.0% | |
AGGGCCGAACTTATTGTAAT+CGG | + | chr1.1:33778678-33778697 | MS.gene073563:CDS | 40.0% | |
CAGAAGAGACACAATTCTGA+AGG | + | chr1.1:33779146-33779165 | MS.gene073563:CDS | 40.0% | |
CGAAGCTACAAGGTTTATGA+AGG | + | chr1.1:33778578-33778597 | MS.gene073563:CDS | 40.0% | |
CTTCAGAATTGTGTCTCTTC+TGG | - | chr1.1:33779148-33779167 | None:intergenic | 40.0% | |
GAAAACACCGGAAAGAGAAT+AGG | + | chr1.1:33778615-33778634 | MS.gene073563:CDS | 40.0% | |
GATTATTTGGGTAAAGGGGA+GGG | + | chr1.1:33778729-33778748 | MS.gene073563:CDS | 40.0% | |
GCGAATGTTATGAAGTCTTC+TGG | + | chr1.1:33778789-33778808 | MS.gene073563:CDS | 40.0% | |
GGTAACCCTAATATAAGGGA+CGG | + | chr1.1:33778837-33778856 | MS.gene073563:CDS | 40.0% | |
GGTATCTCCACATAGCTTAT+AGG | - | chr1.1:33779329-33779348 | None:intergenic | 40.0% | |
GTTCGGCCCTATATTGAAAT+TGG | - | chr1.1:33778668-33778687 | None:intergenic | 40.0% | |
GTTTGCATAGCTAAGAATGG+CGG | + | chr1.1:33779455-33779474 | MS.gene073563:CDS | 40.0% | |
TACATGCCCTATTCTCTTTC+CGG | - | chr1.1:33778625-33778644 | None:intergenic | 40.0% | |
TATGAAGGCGAAACGTCAAT+GGG | + | chr1.1:33778593-33778612 | MS.gene073563:CDS | 40.0% | |
TCCTGTTAGGGTTATATTGC+AGG | + | chr1.1:33778929-33778948 | MS.gene073563:CDS | 40.0% | |
TGTGGAATAGTATGAATGCG+GGG | + | chr1.1:33778904-33778923 | MS.gene073563:CDS | 40.0% | |
TGTGGTTCATTGGAATGCAA+TGG | + | chr1.1:33780093-33780112 | MS.gene073563:CDS | 40.0% | |
TTATGAAGGCGAAACGTCAA+TGG | + | chr1.1:33778592-33778611 | MS.gene073563:CDS | 40.0% | |
TTGCTTTATGAAGGTCATGG+TGG | + | chr1.1:33778816-33778835 | MS.gene073563:CDS | 40.0% | |
TTGGTTTCCATAACATCTCG+AGG | - | chr1.1:33779197-33779216 | None:intergenic | 40.0% | |
TTTGCATAGCTAAGAATGGC+GGG | + | chr1.1:33779456-33779475 | MS.gene073563:CDS | 40.0% | |
! | ATGCATTTTGTAGGTGCTTC+TGG | + | chr1.1:33779847-33779866 | MS.gene073563:intron | 40.0% |
! | TACCACATGAGTGTTGTTGA+TGG | - | chr1.1:33778707-33778726 | None:intergenic | 40.0% |
!!! | CACTGTTTTGAAACGGAGAA+AGG | + | chr1.1:33778452-33778471 | MS.gene073563:CDS | 40.0% |
ACACGCTCTTTCATTCCATC+CGG | + | chr1.1:33779653-33779672 | MS.gene073563:CDS | 45.0% | |
ACGAGGAACACAAGCAAGAA+GGG | - | chr1.1:33779550-33779569 | None:intergenic | 45.0% | |
AGAAAAGTTCCCTATTCGGG+TGG | + | chr1.1:33779298-33779317 | MS.gene073563:CDS | 45.0% | |
AGTTCCCATAACATCTCGAG+GGG | - | chr1.1:33779123-33779142 | None:intergenic | 45.0% | |
ATAACTCAGCTCTCTACCTG+CGG | - | chr1.1:33780022-33780041 | None:intergenic | 45.0% | |
CGACACCGTCCCTTATATTA+GGG | - | chr1.1:33778845-33778864 | None:intergenic | 45.0% | |
CGATTATTTGGGTAAAGGGG+AGG | + | chr1.1:33778728-33778747 | MS.gene073563:CDS | 45.0% | |
CTCCATCAACAACACTCATG+TGG | + | chr1.1:33778702-33778721 | MS.gene073563:CDS | 45.0% | |
GACAATGTGACTCGAGTAAG+AGG | + | chr1.1:33779032-33779051 | MS.gene073563:CDS | 45.0% | |
GGTGACACCTATAAGCTATG+TGG | + | chr1.1:33779319-33779338 | MS.gene073563:CDS | 45.0% | |
GTTTCCCCTCGAGATGTTAT+GGG | + | chr1.1:33779116-33779135 | MS.gene073563:CDS | 45.0% | |
TGTTTCCCCTCGAGATGTTA+TGG | + | chr1.1:33779115-33779134 | MS.gene073563:CDS | 45.0% | |
TTCATTGATGCAACGCGACA+TGG | + | chr1.1:33779877-33779896 | MS.gene073563:CDS | 45.0% | |
TTGCTGCAAGGTGAACATCA+AGG | + | chr1.1:33780050-33780069 | MS.gene073563:CDS | 45.0% | |
! | AGCTTTGTGTGTGAGCTCAT+TGG | + | chr1.1:33779677-33779696 | MS.gene073563:CDS | 45.0% |
! | GAATACCGGATTGACTCACT+CGG | - | chr1.1:33779583-33779602 | None:intergenic | 45.0% |
! | TTGGGAGAAAGCGTGAAGAA+TGG | + | chr1.1:33778385-33778404 | MS.gene073563:CDS | 45.0% |
! | TTTTGTAGGTGCTTCTGGCA+AGG | + | chr1.1:33779852-33779871 | MS.gene073563:intron | 45.0% |
!! | TAGAGGTCTTGTTCTCTCCA+AGG | + | chr1.1:33779241-33779260 | MS.gene073563:CDS | 45.0% |
ATCAGCCGAGTGAGTCAATC+CGG | + | chr1.1:33779575-33779594 | MS.gene073563:CDS | 50.0% | |
CATGATCAGAAATTGGCGCG+CGG | + | chr1.1:33778870-33778889 | MS.gene073563:CDS | 50.0% | |
CGCGACATGGAAACATTGGA+AGG | + | chr1.1:33779890-33779909 | MS.gene073563:CDS | 50.0% | |
CGCGCCAATTTCTGATCATG+AGG | - | chr1.1:33778870-33778889 | None:intergenic | 50.0% | |
CGCGCCTCATGATCAGAAAT+TGG | + | chr1.1:33778863-33778882 | MS.gene073563:CDS | 50.0% | |
GACGAGGAACACAAGCAAGA+AGG | - | chr1.1:33779551-33779570 | None:intergenic | 50.0% | |
GAGCTCACACACAAAGCTTC+CGG | - | chr1.1:33779675-33779694 | None:intergenic | 50.0% | |
GCAACGCGACATGGAAACAT+TGG | + | chr1.1:33779886-33779905 | MS.gene073563:CDS | 50.0% | |
GCGACACCGTCCCTTATATT+AGG | - | chr1.1:33778846-33778865 | None:intergenic | 50.0% | |
TAACTCAGCTCTCTACCTGC+GGG | - | chr1.1:33780021-33780040 | None:intergenic | 50.0% | |
TCACACACAAAGCTTCCGGA+TGG | - | chr1.1:33779671-33779690 | None:intergenic | 50.0% | |
! | ATAGGTGTCACCACCCGAAT+AGG | - | chr1.1:33779311-33779330 | None:intergenic | 50.0% |
! | TAGGTGTCACCACCCGAATA+GGG | - | chr1.1:33779310-33779329 | None:intergenic | 50.0% |
CGCGCGGAAATCTTGCTTTG+TGG | + | chr1.1:33778886-33778905 | MS.gene073563:CDS | 55.0% | |
GAATGCGGGGAGTCCTGTTA+GGG | + | chr1.1:33778917-33778936 | MS.gene073563:CDS | 55.0% | |
GCTACAAAGGACATACCCGC+AGG | + | chr1.1:33780003-33780022 | MS.gene073563:CDS | 55.0% | |
GGGTAAAGGGGAGGGTTCTT+TGG | + | chr1.1:33778737-33778756 | MS.gene073563:CDS | 55.0% | |
TCTCGAGGGGAAACACTAGC+CGG | - | chr1.1:33779110-33779129 | None:intergenic | 55.0% | |
TGAATGCGGGGAGTCCTGTT+AGG | + | chr1.1:33778916-33778935 | MS.gene073563:CDS | 55.0% | |
! | GGCGGGACATTAGCCTATGA+TGG | + | chr1.1:33779473-33779492 | MS.gene073563:CDS | 55.0% |
! | GGGCTTTAGCCGAAGCTACA+AGG | + | chr1.1:33778568-33778587 | MS.gene073563:CDS | 55.0% |
CACTCGGCTGATGCAAGACG+AGG | - | chr1.1:33779567-33779586 | None:intergenic | 60.0% | |
GAGGGGAAACACTAGCCGGT+TGG | - | chr1.1:33779106-33779125 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 33778366 | 33780131 | 33778366 | ID=MS.gene073563 |
chr1.1 | mRNA | 33778366 | 33780131 | 33778366 | ID=MS.gene073563.t1;Parent=MS.gene073563 |
chr1.1 | exon | 33778366 | 33779770 | 33778366 | ID=MS.gene073563.t1.exon1;Parent=MS.gene073563.t1 |
chr1.1 | CDS | 33778366 | 33779770 | 33778366 | ID=cds.MS.gene073563.t1;Parent=MS.gene073563.t1 |
chr1.1 | exon | 33779860 | 33780131 | 33779860 | ID=MS.gene073563.t1.exon2;Parent=MS.gene073563.t1 |
chr1.1 | CDS | 33779860 | 33780131 | 33779860 | ID=cds.MS.gene073563.t1;Parent=MS.gene073563.t1 |
Gene Sequence |
Protein sequence |