AlfalfaGEDB | MS.gene073588

M. sativa cultivar XinJiangDaYe / MS.gene073588

KEGG: K22883
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073588.t1	XP_013467327.1	96.8	217	7	0	17	233	17	233	6.30E-119	436.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073588.t1	Q9ZV06	70.3	209	59	2	25	232	28	234	8.4e-80	298.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073588.t1	B7FGG9	96.8	217	7	0	17	233	17	233	4.5e-119	436.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene073588.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073588.t1	MTR_1g049370	96.567	233	8	0	1	233	1	233	4.75e-172	473

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073588.t1	AT2G39020	68.018	222	68	2	12	232	15	234	6.01e-106	305
MS.gene073588.t1	AT2G39030	61.712	222	83	1	7	228	3	222	1.67e-101	294

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Find 71 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGTCGTTGTCGAAA+TGG	0.382151	1.1:+34368395	None:intergenic
AAATGGGTCGTTGTCGAAAT+GGG	0.450614	1.1:+34368396	None:intergenic
AACTGGGTGGCGTGGGAGGG+AGG	0.528341	1.1:+34368624	None:intergenic
AAGGGGTGGCTAGACGGATG+CGG	0.439953	1.1:+34368596	None:intergenic
ACTCACTGGAGAGAATTTGG+AGG	0.568925	1.1:-34368023	MS.gene073588:CDS
AGACGGATGCGGGTGAAAAC+TGG	0.302785	1.1:+34368607	None:intergenic
AGAGACTTCAAGGATGAGGA+TGG	0.590756	1.1:+34368438	None:intergenic
AGAGAGTGTTATAGAAGGAA+AGG	0.484459	1.1:-34368199	MS.gene073588:CDS
AGGATGGTGGTGGAATGGAA+GGG	0.647470	1.1:+34368454	None:intergenic
AGGGGTGGCTAGACGGATGC+GGG	0.475439	1.1:+34368597	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCCAAAAAAGTTGAATAGTT+AGG	+	chr1.1:34368432-34368451	None:intergenic	30.0%
GAAAACTTCAAAACTCAACA+TGG	-	chr1.1:34368369-34368388	MS.gene073588:CDS	30.0%
GTTATAGAAGGAAAGGATTT+GGG	-	chr1.1:34368493-34368512	MS.gene073588:CDS	30.0%
TGTTATAGAAGGAAAGGATT+TGG	-	chr1.1:34368492-34368511	MS.gene073588:CDS	30.0%
ATGTGTGAGTTGTTCGAAAA+CGG	+	chr1.1:34368154-34368173	None:intergenic	35.0%
CATCACCAAAACTATCAACT+TGG	-	chr1.1:34368320-34368339	MS.gene073588:CDS	35.0%
CCACAAACTAATGCATCAAA+TGG	-	chr1.1:34368128-34368147	MS.gene073588:CDS	35.0%
AAAATGGGTCGTTGTCGAAA+TGG	+	chr1.1:34368293-34368312	None:intergenic	40.0%
AAATGGGTCGTTGTCGAAAT+GGG	+	chr1.1:34368292-34368311	None:intergenic	40.0%
CGAAACAAGCTGTGAAAATG+GGG	-	chr1.1:34368538-34368557	MS.gene073588:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	34368003	34368704	34368003	ID=MS.gene073588
chr1.1	mRNA	34368003	34368704	34368003	ID=MS.gene073588.t1;Parent=MS.gene073588
chr1.1	exon	34368003	34368704	34368003	ID=MS.gene073588.t1.exon1;Parent=MS.gene073588.t1
chr1.1	CDS	34368003	34368704	34368003	ID=cds.MS.gene073588.t1;Parent=MS.gene073588.t1

Gene Sequence

>MS.gene073588

ATGGCCTCCGCAGCACCGCCACCACCACCGACAGAACCCCCATCAACCATGCCAGAAACCTCCCTCCCACGCCACCCAGTTTTCACCCGCATCCGTCTAGCCACCCCTTCCGACGTTCCCTACATCCACAAACTAATGCATCAAATGGCCGTTTTCGAACAACTCACACATCTCATGACCGCGACAGAAGCTTCCTACTCCTCCACTCTCTTCTCCCCTGAAAACAAACCCTTCCATTCCACCACCATCCTCATCCTTGAAGTCTCTCAAAACCCCTTCACCGATACCCATTTCGACAACGACCCATTTTACAAACCCATCACCAAAACTATCAACTTGGATCTCCCAATCGATGACCCAGAGAAGGAAAACTTCAAAACTCAACATGGTAATGAAGTTTTTGTTGCTGGGTTTGTTTTGTTTTTTCCTAACTATTCAACTTTTTTGGGGAAACATGGGTTTTATGTTGAAGATCTGTTTGTGAGAGAGTGTTATAGAAGGAAAGGATTTGGGAAGATGTTGCTTACTGCCGTTGCGAAACAAGCTGTGAAAATGGGGTATGGAAGAGTTGAATGGGTTGTGCTTGATTGGAATGTTAATGCTATAAAGTTTTATGAAGATATGGGTGCTAAGATTTTGCAGGAATGGAGGCTTTGCAGACTCACTGGAGAGAATTTGGAGGCTTATGGAGCTATTGAGTAA

Protein sequence

>MS.gene073588.t1

MASAAPPPPPTEPPSTMPETSLPRHPVFTRIRLATPSDVPYIHKLMHQMAVFEQLTHLMTATEASYSSTLFSPENKPFHSTTILILEVSQNPFTDTHFDNDPFYKPITKTINLDLPIDDPEKENFKTQHGNEVFVAGFVLFFPNYSTFLGKHGFYVEDLFVRECYRRKGFGKMLLTAVAKQAVKMGYGRVEWVVLDWNVNAIKFYEDMGAKILQEWRLCRLTGENLEAYGAIE