Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073647.t1 | KEH40807.1 | 89.3 | 336 | 31 | 4 | 1 | 334 | 1 | 333 | 1.20E-166 | 595.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073647.t1 | Q851V5 | 25.6 | 289 | 178 | 9 | 25 | 283 | 748 | 1029 | 2.9e-09 | 64.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073647.t1 | A0A072VG97 | 89.3 | 336 | 31 | 4 | 1 | 334 | 1 | 333 | 8.4e-167 | 595.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene073647.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073647.t1 | MTR_1g035620 | 89.583 | 336 | 30 | 5 | 1 | 334 | 1 | 333 | 0.0 | 604 |
MS.gene073647.t1 | MTR_1g050845 | 88.095 | 336 | 22 | 4 | 1 | 334 | 1 | 320 | 0.0 | 578 |
MS.gene073647.t1 | MTR_1g035640 | 48.955 | 335 | 143 | 8 | 1 | 317 | 1 | 325 | 5.21e-98 | 298 |
MS.gene073647.t1 | MTR_1g035570 | 44.068 | 354 | 142 | 12 | 1 | 334 | 1 | 318 | 4.18e-82 | 255 |
MS.gene073647.t1 | MTR_1g035650 | 58.019 | 212 | 65 | 5 | 1 | 197 | 1 | 203 | 7.80e-70 | 216 |
MS.gene073647.t1 | MTR_6g061070 | 37.540 | 309 | 155 | 7 | 9 | 282 | 18 | 323 | 1.26e-53 | 183 |
MS.gene073647.t1 | MTR_5g044670 | 31.561 | 301 | 179 | 7 | 3 | 282 | 10 | 304 | 5.63e-36 | 133 |
MS.gene073647.t1 | MTR_1g035490 | 41.176 | 204 | 102 | 7 | 140 | 334 | 58 | 252 | 8.62e-36 | 132 |
MS.gene073647.t1 | MTR_7g050710 | 31.313 | 297 | 180 | 8 | 6 | 279 | 10 | 305 | 6.31e-33 | 124 |
MS.gene073647.t1 | MTR_3g098790 | 30.363 | 303 | 167 | 10 | 6 | 279 | 10 | 297 | 1.48e-32 | 124 |
MS.gene073647.t1 | MTR_1g033740 | 41.975 | 162 | 74 | 5 | 9 | 156 | 22 | 177 | 1.06e-31 | 118 |
MS.gene073647.t1 | MTR_7g050580 | 31.186 | 295 | 166 | 9 | 6 | 279 | 10 | 288 | 3.00e-31 | 120 |
MS.gene073647.t1 | MTR_7g050560 | 29.392 | 296 | 170 | 8 | 6 | 279 | 10 | 288 | 3.45e-30 | 117 |
MS.gene073647.t1 | MTR_1g035480 | 36.095 | 169 | 93 | 4 | 2 | 156 | 3 | 170 | 1.43e-27 | 106 |
MS.gene073647.t1 | MTR_7g050720 | 28.939 | 311 | 176 | 9 | 6 | 279 | 7 | 309 | 1.83e-27 | 110 |
MS.gene073647.t1 | MTR_1g035500 | 36.420 | 162 | 92 | 4 | 5 | 156 | 21 | 181 | 7.31e-26 | 102 |
MS.gene073647.t1 | MTR_1g035510 | 31.674 | 221 | 120 | 8 | 25 | 222 | 2 | 214 | 2.78e-25 | 101 |
MS.gene073647.t1 | MTR_6g043890 | 27.719 | 285 | 172 | 8 | 9 | 267 | 15 | 291 | 5.77e-25 | 103 |
MS.gene073647.t1 | MTR_8g103940 | 27.019 | 322 | 167 | 10 | 2 | 279 | 32 | 329 | 1.08e-24 | 104 |
MS.gene073647.t1 | MTR_1g035520 | 28.339 | 307 | 156 | 10 | 25 | 279 | 88 | 382 | 1.05e-23 | 100 |
MS.gene073647.t1 | MTR_7g050590 | 26.712 | 292 | 162 | 6 | 25 | 279 | 2 | 278 | 2.83e-23 | 98.2 |
MS.gene073647.t1 | MTR_1g035470 | 42.336 | 137 | 72 | 4 | 25 | 156 | 2 | 136 | 1.57e-22 | 92.0 |
MS.gene073647.t1 | MTR_1g108780 | 26.190 | 294 | 162 | 11 | 24 | 279 | 12 | 288 | 3.04e-21 | 94.4 |
MS.gene073647.t1 | MTR_4g119990 | 25.566 | 309 | 179 | 11 | 9 | 279 | 15 | 310 | 3.96e-20 | 90.5 |
MS.gene073647.t1 | MTR_3g061320 | 25.000 | 292 | 179 | 11 | 6 | 279 | 9 | 278 | 4.13e-20 | 89.0 |
MS.gene073647.t1 | MTR_3g061310 | 25.694 | 288 | 188 | 8 | 6 | 279 | 9 | 284 | 7.68e-20 | 88.2 |
MS.gene073647.t1 | MTR_3g061290 | 30.636 | 173 | 109 | 4 | 6 | 175 | 9 | 173 | 1.85e-19 | 85.5 |
MS.gene073647.t1 | MTR_3g061350 | 25.172 | 290 | 186 | 9 | 6 | 279 | 9 | 283 | 5.37e-19 | 85.9 |
MS.gene073647.t1 | MTR_3g061370 | 25.784 | 287 | 182 | 10 | 9 | 279 | 9 | 280 | 5.78e-19 | 85.9 |
MS.gene073647.t1 | MTR_3g061340 | 25.676 | 296 | 167 | 10 | 6 | 279 | 9 | 273 | 6.47e-19 | 85.5 |
MS.gene073647.t1 | MTR_1g035460 | 24.749 | 299 | 166 | 11 | 25 | 279 | 2 | 285 | 1.21e-18 | 86.3 |
MS.gene073647.t1 | MTR_3g061330 | 27.184 | 206 | 140 | 4 | 6 | 203 | 9 | 212 | 1.51e-17 | 81.3 |
MS.gene073647.t1 | MTR_7g050640 | 40.659 | 91 | 52 | 1 | 8 | 96 | 12 | 102 | 6.92e-15 | 70.5 |
MS.gene073647.t1 | MTR_1g035440 | 36.634 | 101 | 61 | 2 | 8 | 105 | 14 | 114 | 6.81e-14 | 70.9 |
MS.gene073647.t1 | MTR_3g005490 | 23.050 | 282 | 177 | 8 | 7 | 285 | 19 | 263 | 1.95e-13 | 69.7 |
MS.gene073647.t1 | MTR_3g005480 | 22.340 | 282 | 180 | 8 | 7 | 285 | 19 | 264 | 1.00e-12 | 67.8 |
MS.gene073647.t1 | MTR_5g070440 | 21.986 | 282 | 189 | 8 | 7 | 285 | 19 | 272 | 4.85e-12 | 65.9 |
MS.gene073647.t1 | MTR_3g005420 | 24.126 | 286 | 178 | 8 | 7 | 285 | 287 | 540 | 6.11e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073647.t1 | AT3G18990 | 23.077 | 377 | 203 | 13 | 9 | 318 | 6 | 362 | 5.01e-12 | 66.6 |
MS.gene073647.t1 | AT1G49475 | 33.898 | 118 | 69 | 5 | 9 | 123 | 34 | 145 | 1.52e-11 | 63.2 |
MS.gene073647.t1 | AT3G18990 | 22.674 | 344 | 190 | 10 | 9 | 285 | 6 | 340 | 3.52e-11 | 63.9 |
Find 54 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTTGCAGATGACCCTTTA+AGG | 0.106528 | 1.1:-35207619 | None:intergenic |
GTGCTCAAAAGGAAATATTT+TGG | 0.171981 | 1.1:+35206872 | MS.gene073647:CDS |
AAAATCTTAACCTTAAAATA+TGG | 0.178478 | 1.1:-35206994 | None:intergenic |
TCTTCTTATGATGATGATAT+TGG | 0.197327 | 1.1:+35207963 | MS.gene073647:CDS |
ATATTTGGTTTAAGAGAAAT+TGG | 0.235240 | 1.1:+35206911 | MS.gene073647:CDS |
AGAAATTTGTGGAGAAATAT+TGG | 0.241294 | 1.1:+35206809 | MS.gene073647:CDS |
TTTGGAAGTCTAAGAATTAC+TGG | 0.251892 | 1.1:-35206847 | None:intergenic |
GCTTTAGTATTCAAATATTT+AGG | 0.260785 | 1.1:+35206967 | MS.gene073647:CDS |
TATTTGAATGAGAACCTTAA+AGG | 0.282945 | 1.1:+35207605 | MS.gene073647:CDS |
AGTCTAAGAATTACTGGATT+TGG | 0.299817 | 1.1:-35206841 | None:intergenic |
ATATTTCTCCACAAATTTCT+TGG | 0.318034 | 1.1:-35206806 | None:intergenic |
ACTATCTTCAAGAACTCTTC+TGG | 0.329140 | 1.1:-35206551 | None:intergenic |
CTTCTTATGATGATGATATT+GGG | 0.358933 | 1.1:+35207964 | MS.gene073647:CDS |
TGGAGCGTGAAGGTGATATT+TGG | 0.370024 | 1.1:+35206896 | MS.gene073647:CDS |
GGGAAGAGAAGAGGCATTGA+AGG | 0.377729 | 1.1:+35207984 | MS.gene073647:CDS |
AACATCACCTTCACTTTCAT+AGG | 0.384516 | 1.1:-35207662 | None:intergenic |
TCGAAATCATGAACTACATA+AGG | 0.397577 | 1.1:+35206574 | MS.gene073647:CDS |
TTTGGCTTGGGTAATAGTTA+TGG | 0.402099 | 1.1:-35207813 | None:intergenic |
TATTTCTCCACAAATTTCTT+GGG | 0.405795 | 1.1:-35206805 | None:intergenic |
TCATCTGCAAGCATTAGATT+TGG | 0.416468 | 1.1:+35207629 | MS.gene073647:CDS |
TTTGCAAAGTCTCTAAAAGA+TGG | 0.419454 | 1.1:+35206940 | MS.gene073647:CDS |
GACAATTCAAGTTCAAAACT+TGG | 0.430631 | 1.1:-35207365 | None:intergenic |
ATTTGAATGAGAACCTTAAA+GGG | 0.440321 | 1.1:+35207606 | MS.gene073647:CDS |
ACTTCCAAATGGTGCTCAAA+AGG | 0.444677 | 1.1:+35206861 | MS.gene073647:CDS |
AAATCTTAACCTTAAAATAT+GGG | 0.446492 | 1.1:-35206993 | None:intergenic |
GAACAATGACAAGGTTATGA+AGG | 0.451012 | 1.1:+35207933 | MS.gene073647:intron |
GGCAAATGGCTTCCAACCAC+TGG | 0.462531 | 1.1:-35207720 | None:intergenic |
TATTTGGTTTAAGAGAAATT+GGG | 0.488183 | 1.1:+35206912 | MS.gene073647:CDS |
TTACGCCCATGGCTATACTT+TGG | 0.489114 | 1.1:+35207394 | MS.gene073647:CDS |
GAGGGTTCCCAAGAAATTTG+TGG | 0.503049 | 1.1:+35206798 | MS.gene073647:intron |
CGAAATCATGAACTACATAA+GGG | 0.505471 | 1.1:+35206575 | MS.gene073647:CDS |
GAGAGGAGGTATGATTAAGA+AGG | 0.513052 | 1.1:+35207298 | MS.gene073647:CDS |
TTCATTGATGAAAGTTGTGA+AGG | 0.513828 | 1.1:+35207057 | MS.gene073647:CDS |
TACTTTGCAGGTAGTAAGAG+AGG | 0.516159 | 1.1:+35207281 | MS.gene073647:intron |
GACTTACCAAAGTATAGCCA+TGG | 0.533080 | 1.1:-35207400 | None:intergenic |
GTAATTCTTAGACTTCCAAA+TGG | 0.548786 | 1.1:+35206850 | MS.gene073647:CDS |
GACAATGTTAATAATAGTGC+TGG | 0.549297 | 1.1:+35207117 | MS.gene073647:CDS |
GAGGCATTGAAGGAAGTTCA+AGG | 0.552649 | 1.1:+35207994 | MS.gene073647:CDS |
ACACGAATCTCGATTGTGAT+CGG | 0.556178 | 1.1:-35208478 | None:intergenic |
ATAGTTATGGTGAATGAAAG+TGG | 0.568370 | 1.1:-35207800 | None:intergenic |
GATGATATTGGGAAGAGAAG+AGG | 0.582027 | 1.1:+35207975 | MS.gene073647:CDS |
TCGTGTGAATTCTACTTACC+CGG | 0.582737 | 1.1:+35208495 | MS.gene073647:CDS |
TTAGTATTCAAATATTTAGG+TGG | 0.586781 | 1.1:+35206970 | MS.gene073647:CDS |
TATGCTCTTGAAAAGTCACT+TGG | 0.596669 | 1.1:-35207584 | None:intergenic |
CTTGCATTGTGACCAGTGGT+TGG | 0.607128 | 1.1:+35207708 | MS.gene073647:CDS |
AGTACATACTCGAAAGAACA+TGG | 0.608206 | 1.1:-35208022 | None:intergenic |
TTGTCACAATCTTACGCCCA+TGG | 0.612713 | 1.1:+35207383 | MS.gene073647:CDS |
TGTGTTTCAGCAGACTTAGG+TGG | 0.616192 | 1.1:+35208442 | MS.gene073647:intron |
ATAGTGCTGGCACATCTCAA+AGG | 0.617590 | 1.1:+35207130 | MS.gene073647:CDS |
ATAACTATTACCCAAGCCAA+AGG | 0.622711 | 1.1:+35207815 | MS.gene073647:CDS |
TTTGCAGGTAGTAAGAGAGG+AGG | 0.644007 | 1.1:+35207284 | MS.gene073647:intron |
ACTTACCAAAGTATAGCCAT+GGG | 0.659069 | 1.1:-35207399 | None:intergenic |
AGAACTTGCATTGTGACCAG+TGG | 0.689771 | 1.1:+35207704 | MS.gene073647:CDS |
GAACATGCCTATGAAAGTGA+AGG | 0.707159 | 1.1:+35207655 | MS.gene073647:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAATTATTTAAAAGTTCA+AGG | + | chr1.1:35208247-35208266 | MS.gene073647:intron | 10.0% |
!!! | AGTTTTTAGATTTTTTAAAT+AGG | + | chr1.1:35208052-35208071 | MS.gene073647:intron | 10.0% |
!!! | TTTTTTTAAATAAAGTAAGA+AGG | - | chr1.1:35207846-35207865 | None:intergenic | 10.0% |
!! | AAAAAATATAACTTACAAGT+TGG | + | chr1.1:35207743-35207762 | MS.gene073647:CDS | 15.0% |
!! | AAAATCTTAACCTTAAAATA+TGG | - | chr1.1:35206997-35207016 | None:intergenic | 15.0% |
!! | AAATCTTAACCTTAAAATAT+GGG | - | chr1.1:35206996-35207015 | None:intergenic | 15.0% |
!! | ACAATAATCATTTATGAATA+AGG | - | chr1.1:35206770-35206789 | None:intergenic | 15.0% |
!! | ATTATTAACAAATGTATAGT+TGG | - | chr1.1:35206700-35206719 | None:intergenic | 15.0% |
!! | CAATTGATATTAAACAAATT+TGG | - | chr1.1:35207895-35207914 | None:intergenic | 15.0% |
!!! | AACTTGTAAGTTATATTTTT+TGG | - | chr1.1:35207744-35207763 | None:intergenic | 15.0% |
!!! | ATTTATTTTAGCCATATATA+AGG | - | chr1.1:35207247-35207266 | None:intergenic | 15.0% |
!!! | GAACTAGTTTTTATTTTAAT+TGG | - | chr1.1:35208274-35208293 | None:intergenic | 15.0% |
!!! | GTTCAAATATTATTTTTTGA+AGG | + | chr1.1:35207446-35207465 | MS.gene073647:intron | 15.0% |
!!! | GTTCTAAATTATTAGTTATT+TGG | + | chr1.1:35207476-35207495 | MS.gene073647:intron | 15.0% |
!!! | TATAAGTTACTAGTAAATTT+TGG | + | chr1.1:35207516-35207535 | MS.gene073647:intron | 15.0% |
!!! | TATTTTAAGGTTAAGATTTT+TGG | + | chr1.1:35206997-35207016 | MS.gene073647:CDS | 15.0% |
!!! | TTCATCAATGAATTTTATAT+TGG | - | chr1.1:35207049-35207068 | None:intergenic | 15.0% |
!! | AGGATTAATTATGTTAAATG+TGG | + | chr1.1:35208519-35208538 | MS.gene073647:intron | 20.0% |
!! | GCTTTAGTATTCAAATATTT+AGG | + | chr1.1:35206967-35206986 | MS.gene073647:CDS | 20.0% |
!! | TTAGTATTCAAATATTTAGG+TGG | + | chr1.1:35206970-35206989 | MS.gene073647:CDS | 20.0% |
!! | TTTAACATAATTAATCCTAC+CGG | - | chr1.1:35208517-35208536 | None:intergenic | 20.0% |
!!! | AAGTTATATTTTTTGGCAAA+TGG | - | chr1.1:35207737-35207756 | None:intergenic | 20.0% |
!!! | ATAACTAGTTTTCTAACATT+AGG | + | chr1.1:35208122-35208141 | MS.gene073647:intron | 20.0% |
!!! | ATATTTGGTTTAAGAGAAAT+TGG | + | chr1.1:35206911-35206930 | MS.gene073647:CDS | 20.0% |
!!! | TATTTGGTTTAAGAGAAATT+GGG | + | chr1.1:35206912-35206931 | MS.gene073647:CDS | 20.0% |
!!! | TTGTTATTCTACCTTATATA+TGG | + | chr1.1:35207233-35207252 | MS.gene073647:intron | 20.0% |
!!! | TTGTTTTTTTTTTACTTTGC+AGG | + | chr1.1:35207269-35207288 | MS.gene073647:intron | 20.0% |
! | AGAAATTTGTGGAGAAATAT+TGG | + | chr1.1:35206809-35206828 | MS.gene073647:CDS | 25.0% |
! | ATATTTCTCCACAAATTTCT+TGG | - | chr1.1:35206809-35206828 | None:intergenic | 25.0% |
! | ATTATTCAGCAAAAAATCAC+AGG | + | chr1.1:35207174-35207193 | MS.gene073647:CDS | 25.0% |
! | ATTTATAATTTAAGAGGGAG+AGG | - | chr1.1:35208233-35208252 | None:intergenic | 25.0% |
! | ATTTGAATGAGAACCTTAAA+GGG | + | chr1.1:35207606-35207625 | MS.gene073647:CDS | 25.0% |
! | TAAACCTTGAATTGAAATAG+AGG | + | chr1.1:35207558-35207577 | MS.gene073647:intron | 25.0% |
! | TATTTCTCCACAAATTTCTT+GGG | - | chr1.1:35206808-35206827 | None:intergenic | 25.0% |
! | TATTTGAATGAGAACCTTAA+AGG | + | chr1.1:35207605-35207624 | MS.gene073647:CDS | 25.0% |
! | TTAACATAATTAATCCTACC+GGG | - | chr1.1:35208516-35208535 | None:intergenic | 25.0% |
!! | CTTCTTATGATGATGATATT+GGG | + | chr1.1:35207964-35207983 | MS.gene073647:CDS | 25.0% |
!! | GATTGTGATTTGTAATTGAA+AGG | - | chr1.1:35206678-35206697 | None:intergenic | 25.0% |
!! | TCTTCTTATGATGATGATAT+TGG | + | chr1.1:35207963-35207982 | MS.gene073647:CDS | 25.0% |
!! | TGCTCAAAAGGAAATATTTT+GGG | + | chr1.1:35206873-35206892 | MS.gene073647:CDS | 25.0% |
AAGTAAGAAGGAAAAACCTT+TGG | - | chr1.1:35207834-35207853 | None:intergenic | 30.0% | |
AATTCCTTTGAACAATGACA+AGG | + | chr1.1:35207924-35207943 | MS.gene073647:intron | 30.0% | |
ACATCTCAAAGGAGAAAAAA+CGG | + | chr1.1:35207141-35207160 | MS.gene073647:CDS | 30.0% | |
AGTCTAAGAATTACTGGATT+TGG | - | chr1.1:35206844-35206863 | None:intergenic | 30.0% | |
ATAACCTTGTCATTGTTCAA+AGG | - | chr1.1:35207931-35207950 | None:intergenic | 30.0% | |
ATAAGGATATGTAATGCAAC+AGG | - | chr1.1:35206753-35206772 | None:intergenic | 30.0% | |
ATAGTTATGGTGAATGAAAG+TGG | - | chr1.1:35207803-35207822 | None:intergenic | 30.0% | |
CGAAATCATGAACTACATAA+GGG | + | chr1.1:35206575-35206594 | MS.gene073647:CDS | 30.0% | |
GACAATGTTAATAATAGTGC+TGG | + | chr1.1:35207117-35207136 | MS.gene073647:CDS | 30.0% | |
GTAATTCTTAGACTTCCAAA+TGG | + | chr1.1:35206850-35206869 | MS.gene073647:CDS | 30.0% | |
GTATCCTCTATTTCAATTCA+AGG | - | chr1.1:35207565-35207584 | None:intergenic | 30.0% | |
TCGAAATCATGAACTACATA+AGG | + | chr1.1:35206574-35206593 | MS.gene073647:CDS | 30.0% | |
TTCATTGATGAAAGTTGTGA+AGG | + | chr1.1:35207057-35207076 | MS.gene073647:CDS | 30.0% | |
TTGTCATTGTTCAAAGGAAT+TGG | - | chr1.1:35207925-35207944 | None:intergenic | 30.0% | |
TTTGGAAGTCTAAGAATTAC+TGG | - | chr1.1:35206850-35206869 | None:intergenic | 30.0% | |
! | GACAATTCAAGTTCAAAACT+TGG | - | chr1.1:35207368-35207387 | None:intergenic | 30.0% |
! | GTGCTCAAAAGGAAATATTT+TGG | + | chr1.1:35206872-35206891 | MS.gene073647:CDS | 30.0% |
! | TTTGCAAAGTCTCTAAAAGA+TGG | + | chr1.1:35206940-35206959 | MS.gene073647:CDS | 30.0% |
!! | TCAAAAGGAAATATTTTGGG+TGG | + | chr1.1:35206876-35206895 | MS.gene073647:CDS | 30.0% |
!!! | GATTTTTGGTCACAATACAT+TGG | + | chr1.1:35207011-35207030 | MS.gene073647:CDS | 30.0% |
AACATCACCTTCACTTTCAT+AGG | - | chr1.1:35207665-35207684 | None:intergenic | 35.0% | |
ACTATCTTCAAGAACTCTTC+TGG | - | chr1.1:35206554-35206573 | None:intergenic | 35.0% | |
ACTTACCAAAGTATAGCCAT+GGG | - | chr1.1:35207402-35207421 | None:intergenic | 35.0% | |
AGTACATACTCGAAAGAACA+TGG | - | chr1.1:35208025-35208044 | None:intergenic | 35.0% | |
ATAACTATTACCCAAGCCAA+AGG | + | chr1.1:35207815-35207834 | MS.gene073647:CDS | 35.0% | |
ATGATTATTGTCTGTTGCAG+AGG | + | chr1.1:35206779-35206798 | MS.gene073647:intron | 35.0% | |
GAACAATGACAAGGTTATGA+AGG | + | chr1.1:35207933-35207952 | MS.gene073647:intron | 35.0% | |
TATGCTCTTGAAAAGTCACT+TGG | - | chr1.1:35207587-35207606 | None:intergenic | 35.0% | |
TCATCTGCAAGCATTAGATT+TGG | + | chr1.1:35207629-35207648 | MS.gene073647:CDS | 35.0% | |
TGATTATTGTCTGTTGCAGA+GGG | + | chr1.1:35206780-35206799 | MS.gene073647:intron | 35.0% | |
! | ATTTCCTTTTGAGCACCATT+TGG | - | chr1.1:35206868-35206887 | None:intergenic | 35.0% |
! | TTTAGGTGGCCCATATTTTA+AGG | + | chr1.1:35206984-35207003 | MS.gene073647:CDS | 35.0% |
!! | TTTGGCTTGGGTAATAGTTA+TGG | - | chr1.1:35207816-35207835 | None:intergenic | 35.0% |
ACACGAATCTCGATTGTGAT+CGG | - | chr1.1:35208481-35208500 | None:intergenic | 40.0% | |
ACTTCCAAATGGTGCTCAAA+AGG | + | chr1.1:35206861-35206880 | MS.gene073647:CDS | 40.0% | |
AGAAGGAAAAACCTTTGGCT+TGG | - | chr1.1:35207829-35207848 | None:intergenic | 40.0% | |
CATTGTGTTTCAGCAGACTT+AGG | + | chr1.1:35208439-35208458 | MS.gene073647:intron | 40.0% | |
GAACATGCCTATGAAAGTGA+AGG | + | chr1.1:35207655-35207674 | MS.gene073647:CDS | 40.0% | |
GACTTACCAAAGTATAGCCA+TGG | - | chr1.1:35207403-35207422 | None:intergenic | 40.0% | |
GATGATATTGGGAAGAGAAG+AGG | + | chr1.1:35207975-35207994 | MS.gene073647:CDS | 40.0% | |
TACTTTGCAGGTAGTAAGAG+AGG | + | chr1.1:35207281-35207300 | MS.gene073647:intron | 40.0% | |
TCGTGTGAATTCTACTTACC+CGG | + | chr1.1:35208495-35208514 | MS.gene073647:CDS | 40.0% | |
! | GAAGGAAAAACCTTTGGCTT+GGG | - | chr1.1:35207828-35207847 | None:intergenic | 40.0% |
! | GAGAGGAGGTATGATTAAGA+AGG | + | chr1.1:35207298-35207317 | MS.gene073647:CDS | 40.0% |
AGAACTTGCATTGTGACCAG+TGG | + | chr1.1:35207704-35207723 | MS.gene073647:CDS | 45.0% | |
GAGGGTTCCCAAGAAATTTG+TGG | + | chr1.1:35206798-35206817 | MS.gene073647:intron | 45.0% | |
GTGAATTCTACTTACCCGGT+AGG | + | chr1.1:35208499-35208518 | MS.gene073647:intron | 45.0% | |
TGCTTGCAGATGACCCTTTA+AGG | - | chr1.1:35207622-35207641 | None:intergenic | 45.0% | |
TGGAGCGTGAAGGTGATATT+TGG | + | chr1.1:35206896-35206915 | MS.gene073647:CDS | 45.0% | |
TGTGTTTCAGCAGACTTAGG+TGG | + | chr1.1:35208442-35208461 | MS.gene073647:intron | 45.0% | |
TTACGCCCATGGCTATACTT+TGG | + | chr1.1:35207394-35207413 | MS.gene073647:CDS | 45.0% | |
TTGTCACAATCTTACGCCCA+TGG | + | chr1.1:35207383-35207402 | MS.gene073647:CDS | 45.0% | |
TTTGCAGGTAGTAAGAGAGG+AGG | + | chr1.1:35207284-35207303 | MS.gene073647:intron | 45.0% | |
!! | ATAGTGCTGGCACATCTCAA+AGG | + | chr1.1:35207130-35207149 | MS.gene073647:CDS | 45.0% |
!! | ATATTTTGGGTGGAGCGTGA+AGG | + | chr1.1:35206886-35206905 | MS.gene073647:CDS | 45.0% |
!! | GAGGCATTGAAGGAAGTTCA+AGG | + | chr1.1:35207994-35208013 | MS.gene073647:CDS | 45.0% |
!! | AAATAATTTATAATTTAAGA+GGG | - | chr1.1:35208238-35208257 | None:intergenic | 5.0% |
!! | TAAATAATTTATAATTTAAG+AGG | - | chr1.1:35208239-35208258 | None:intergenic | 5.0% |
!!! | TTTTGAATTTATAATAATTT+AGG | + | chr1.1:35208183-35208202 | MS.gene073647:intron | 5.0% |
CTTGCATTGTGACCAGTGGT+TGG | + | chr1.1:35207708-35207727 | MS.gene073647:CDS | 50.0% | |
!! | GGGAAGAGAAGAGGCATTGA+AGG | + | chr1.1:35207984-35208003 | MS.gene073647:CDS | 50.0% |
GGCAAATGGCTTCCAACCAC+TGG | - | chr1.1:35207723-35207742 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 35206536 | 35208601 | 35206536 | ID=MS.gene073647 |
chr1.1 | mRNA | 35206536 | 35208601 | 35206536 | ID=MS.gene073647.t1;Parent=MS.gene073647 |
chr1.1 | exon | 35206536 | 35206604 | 35206536 | ID=MS.gene073647.t1.exon1;Parent=MS.gene073647.t1 |
chr1.1 | CDS | 35206536 | 35206604 | 35206536 | ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1 |
chr1.1 | exon | 35206799 | 35207195 | 35206799 | ID=MS.gene073647.t1.exon2;Parent=MS.gene073647.t1 |
chr1.1 | CDS | 35206799 | 35207195 | 35206799 | ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1 |
chr1.1 | exon | 35207291 | 35207415 | 35207291 | ID=MS.gene073647.t1.exon3;Parent=MS.gene073647.t1 |
chr1.1 | CDS | 35207291 | 35207415 | 35207291 | ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1 |
chr1.1 | exon | 35207578 | 35207836 | 35207578 | ID=MS.gene073647.t1.exon4;Parent=MS.gene073647.t1 |
chr1.1 | CDS | 35207578 | 35207836 | 35207578 | ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1 |
chr1.1 | exon | 35207946 | 35208035 | 35207946 | ID=MS.gene073647.t1.exon5;Parent=MS.gene073647.t1 |
chr1.1 | CDS | 35207946 | 35208035 | 35207946 | ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1 |
chr1.1 | exon | 35208455 | 35208516 | 35208455 | ID=MS.gene073647.t1.exon6;Parent=MS.gene073647.t1 |
chr1.1 | CDS | 35208455 | 35208516 | 35208455 | ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1 |
chr1.1 | exon | 35208599 | 35208601 | 35208599 | ID=MS.gene073647.t1.exon7;Parent=MS.gene073647.t1 |
chr1.1 | CDS | 35208599 | 35208601 | 35208599 | ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1 |
Gene Sequence |
Protein sequence |