AlfalfaGEDB | MS.gene073647

M. sativa cultivar XinJiangDaYe / MS.gene073647

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073647.t1	KEH40807.1	89.3	336	31	4	1	334	1	333	1.20E-166	595.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073647.t1	Q851V5	25.6	289	178	9	25	283	748	1029	2.9e-09	64.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073647.t1	A0A072VG97	89.3	336	31	4	1	334	1	333	8.4e-167	595.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene073647.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073647.t1	MTR_1g035620	89.583	336	30	5	1	334	1	333	0.0	604
MS.gene073647.t1	MTR_1g050845	88.095	336	22	4	1	334	1	320	0.0	578
MS.gene073647.t1	MTR_1g035640	48.955	335	143	8	1	317	1	325	5.21e-98	298
MS.gene073647.t1	MTR_1g035570	44.068	354	142	12	1	334	1	318	4.18e-82	255
MS.gene073647.t1	MTR_1g035650	58.019	212	65	5	1	197	1	203	7.80e-70	216
MS.gene073647.t1	MTR_6g061070	37.540	309	155	7	9	282	18	323	1.26e-53	183
MS.gene073647.t1	MTR_5g044670	31.561	301	179	7	3	282	10	304	5.63e-36	133
MS.gene073647.t1	MTR_1g035490	41.176	204	102	7	140	334	58	252	8.62e-36	132
MS.gene073647.t1	MTR_7g050710	31.313	297	180	8	6	279	10	305	6.31e-33	124
MS.gene073647.t1	MTR_3g098790	30.363	303	167	10	6	279	10	297	1.48e-32	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073647.t1	AT3G18990	23.077	377	203	13	9	318	6	362	5.01e-12	66.6
MS.gene073647.t1	AT1G49475	33.898	118	69	5	9	123	34	145	1.52e-11	63.2
MS.gene073647.t1	AT3G18990	22.674	344	190	10	9	285	6	340	3.52e-11	63.9

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Find 54 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTAACCTTAAAATA+TGG	0.178478	1.1:-35206994	None:intergenic
AAATCTTAACCTTAAAATAT+GGG	0.446492	1.1:-35206993	None:intergenic
AACATCACCTTCACTTTCAT+AGG	0.384516	1.1:-35207662	None:intergenic
ACACGAATCTCGATTGTGAT+CGG	0.556178	1.1:-35208478	None:intergenic
ACTATCTTCAAGAACTCTTC+TGG	0.329140	1.1:-35206551	None:intergenic
ACTTACCAAAGTATAGCCAT+GGG	0.659069	1.1:-35207399	None:intergenic
ACTTCCAAATGGTGCTCAAA+AGG	0.444677	1.1:+35206861	MS.gene073647:CDS
AGAAATTTGTGGAGAAATAT+TGG	0.241294	1.1:+35206809	MS.gene073647:CDS
AGAACTTGCATTGTGACCAG+TGG	0.689771	1.1:+35207704	MS.gene073647:CDS
AGTACATACTCGAAAGAACA+TGG	0.608206	1.1:-35208022	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAAGAAGGAAAAACCTT+TGG	-	chr1.1:35207834-35207853	None:intergenic	30.0%
AATTCCTTTGAACAATGACA+AGG	+	chr1.1:35207924-35207943	MS.gene073647:intron	30.0%
ACATCTCAAAGGAGAAAAAA+CGG	+	chr1.1:35207141-35207160	MS.gene073647:CDS	30.0%
AGTCTAAGAATTACTGGATT+TGG	-	chr1.1:35206844-35206863	None:intergenic	30.0%
ATAACCTTGTCATTGTTCAA+AGG	-	chr1.1:35207931-35207950	None:intergenic	30.0%
ATAAGGATATGTAATGCAAC+AGG	-	chr1.1:35206753-35206772	None:intergenic	30.0%
ATAGTTATGGTGAATGAAAG+TGG	-	chr1.1:35207803-35207822	None:intergenic	30.0%
CGAAATCATGAACTACATAA+GGG	+	chr1.1:35206575-35206594	MS.gene073647:CDS	30.0%
GACAATGTTAATAATAGTGC+TGG	+	chr1.1:35207117-35207136	MS.gene073647:CDS	30.0%
GTAATTCTTAGACTTCCAAA+TGG	+	chr1.1:35206850-35206869	MS.gene073647:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	35206536	35208601	35206536	ID=MS.gene073647
chr1.1	mRNA	35206536	35208601	35206536	ID=MS.gene073647.t1;Parent=MS.gene073647
chr1.1	exon	35206536	35206604	35206536	ID=MS.gene073647.t1.exon1;Parent=MS.gene073647.t1
chr1.1	CDS	35206536	35206604	35206536	ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1
chr1.1	exon	35206799	35207195	35206799	ID=MS.gene073647.t1.exon2;Parent=MS.gene073647.t1
chr1.1	CDS	35206799	35207195	35206799	ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1
chr1.1	exon	35207291	35207415	35207291	ID=MS.gene073647.t1.exon3;Parent=MS.gene073647.t1
chr1.1	CDS	35207291	35207415	35207291	ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1
chr1.1	exon	35207578	35207836	35207578	ID=MS.gene073647.t1.exon4;Parent=MS.gene073647.t1
chr1.1	CDS	35207578	35207836	35207578	ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1
chr1.1	exon	35207946	35208035	35207946	ID=MS.gene073647.t1.exon5;Parent=MS.gene073647.t1
chr1.1	CDS	35207946	35208035	35207946	ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1
chr1.1	exon	35208455	35208516	35208455	ID=MS.gene073647.t1.exon6;Parent=MS.gene073647.t1
chr1.1	CDS	35208455	35208516	35208455	ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1
chr1.1	exon	35208599	35208601	35208599	ID=MS.gene073647.t1.exon7;Parent=MS.gene073647.t1
chr1.1	CDS	35208599	35208601	35208599	ID=cds.MS.gene073647.t1;Parent=MS.gene073647.t1

Gene Sequence

>MS.gene073647

ATGTCATTACATCATCCAGAAGAGTTCTTGAAGATAGTTCGAAATCATGAACTACATAAGGGAGAGCTTGTAAGCATATTACAAAATTACATTCGATAGAATATGCATGTTAAATTAAATATACATGCAACTAAATATTCCTTTCAATTACAAATCACAATCCAACTATACATTTGTTAATAATTTTTATAAATTGTCTATAAAGTTTCTTCTTCCTGTTGCATTACATATCCTTATTCATAAATGATTATTGTCTGTTGCAGAGGGTTCCCAAGAAATTTGTGGAGAAATATTGGAAAAAAATACCAAATCCAGTAATTCTTAGACTTCCAAATGGTGCTCAAAAGGAAATATTTTGGGTGGAGCGTGAAGGTGATATTTGGTTTAAGAGAAATTGGGAGAATTTTGCAAAGTCTCTAAAAGATGGATATGCTTTAGTATTCAAATATTTAGGTGGCCCATATTTTAAGGTTAAGATTTTTGGTCACAATACATTGGAAAAAGACTATTCCAATATAAAATTCATTGATGAAAGTTGTGAAGGTAGAGAAGAAGTTCAAGAAGTTGTTGAACTGAGTGATGACAATGTTAATAATAGTGCTGGCACATCTCAAAGGAGAAAAAACGGCAAGAGAAAAATTATTCAGCAAAAAATCACAGGTGAGTTCATCTATTTTTTTTATTTTTTTTATTTCAATTGTTATTCTACCTTATATATGGCTAAAATAAATTTTTGTTTTTTTTTTACTTTGCAGGTAGTAAGAGAGGAGGTATGATTAAGAAGGCTAAAAAATGCTCAACAATTAGTGAGAGAGACAATAATGAGAATCCAAGTTTTGAACTTGAATTGTCACAATCTTACGCCCATGGCTATACTTTGGTAAGTCTACTAATAAAACATTATACTTATGTTCAAATATTATTTTTTGAAGGAACTTATGTTCTAAATTATTAGTTATTTGGCTATATCACATAAATTATATAAGTTACTAGTAAATTTTGGTTTTAATTAATATCTCTAATAAACCTTGAATTGAAATAGAGGATACCAAGTGACTTTTCAAGAGCATATTTGAATGAGAACCTTAAAGGGTCATCTGCAAGCATTAGATTTGGTGAGAACATGCCTATGAAAGTGAAGGTGATGTTTCAAGATATCAAGAATAATAGAACTTGCATTGTGACCAGTGGTTGGAAGCCATTTGCCAAAAAATATAACTTACAAGTTGGTGATAAATGTAAATTTGTGATGACTCAACTTCAACCACTTTCATTCACCATAACTATTACCCAAGCCAAAGGTTTTTCCTTCTTACTTTATTTAAAAAAATTGTTTTTTCATTGACATGTGATTCACCAAATTTGTTTAATATCAATTGATTTTCTCCAATTCCTTTGAACAATGACAAGGTTATGAAGGAATGATCTCTTCTTATGATGATGATATTGGGAAGAGAAGAGGCATTGAAGGAAGTTCAAGGAGCTGCCATGTTCTTTCGAGTATGTACTTGTTTAAAGTTTTTAGATTTTTTAAATAGGTTTTTGAATTAAGTGTTAATTTAGTATCTAAAACTTTTTAAAAAATTATAACTAGTTTTCTAACATTAGGCTTTCTTACATTTTAAAAATAATTTATAACAATATCTGTTTTGAATTTATAATAATTTAGGTTTATGTCTCTTACAATTTATTTACCTCTCCCTCTTAAATTATAAATTATTTAAAAGTTCAAGGACCAATTAAAATAAAAACTAGTTCAAGAATATCAAATAAAAATCTGTAAATAGTGTACATATTTTTTTTTTTTAATTTCAATATTTTCTAGTGTCAAAGAGATGAAGAAACAAGTTTATCAATATTTAATGTCGACAACAATCATCATATCATAAAAATTATATATCTTCATTGTGTTTCAGCAGACTTAGGTGGTAATGTGATGAAACCGATCACAATCGAGATTCGTGTGAATTCTACTTACCCGGTAGGATTAATTATGTTAAATGTGGTTACTATATAGATATATGTTAAAACTGTGTATAAATAAAAATTTGTTGTGTTTGCAGTAA

Protein sequence

>MS.gene073647.t1

MSLHHPEEFLKIVRNHELHKGELRVPKKFVEKYWKKIPNPVILRLPNGAQKEIFWVEREGDIWFKRNWENFAKSLKDGYALVFKYLGGPYFKVKIFGHNTLEKDYSNIKFIDESCEGREEVQEVVELSDDNVNNSAGTSQRRKNGKRKIIQQKITGSKRGGMIKKAKKCSTISERDNNENPSFELELSQSYAHGYTLRIPSDFSRAYLNENLKGSSASIRFGENMPMKVKVMFQDIKNNRTCIVTSGWKPFAKKYNLQVGDKCKFVMTQLQPLSFTITITQAKGYEGMISSYDDDIGKRRGIEGSSRSCHVLSNLGGNVMKPITIEIRVNSTYP