Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073648.t1 | XP_024630392.1 | 90.5 | 306 | 28 | 1 | 1 | 306 | 1 | 305 | 3.30E-152 | 547.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073648.t1 | Q8L3W1 | 25.2 | 330 | 185 | 9 | 11 | 284 | 6 | 329 | 7.3e-15 | 82.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073648.t1 | A0A396JU70 | 90.5 | 304 | 28 | 1 | 1 | 304 | 1 | 303 | 2.0e-151 | 544.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene073648.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073648.t1 | MTR_4g119990 | 63.914 | 327 | 90 | 7 | 1 | 303 | 1 | 323 | 2.83e-138 | 396 |
MS.gene073648.t1 | MTR_6g043890 | 61.842 | 304 | 88 | 6 | 1 | 283 | 1 | 297 | 3.35e-125 | 361 |
MS.gene073648.t1 | MTR_1g035440 | 55.556 | 243 | 66 | 4 | 1 | 201 | 1 | 243 | 1.46e-69 | 216 |
MS.gene073648.t1 | MTR_7g050560 | 30.851 | 282 | 166 | 7 | 9 | 277 | 11 | 276 | 9.51e-32 | 120 |
MS.gene073648.t1 | MTR_5g044670 | 29.524 | 315 | 190 | 10 | 11 | 306 | 16 | 317 | 2.02e-31 | 120 |
MS.gene073648.t1 | MTR_3g098790 | 29.553 | 291 | 194 | 7 | 9 | 291 | 11 | 298 | 9.69e-31 | 118 |
MS.gene073648.t1 | MTR_3g061310 | 29.452 | 292 | 181 | 9 | 9 | 291 | 10 | 285 | 2.25e-30 | 116 |
MS.gene073648.t1 | MTR_3g061350 | 29.252 | 294 | 178 | 11 | 9 | 291 | 10 | 284 | 3.78e-30 | 115 |
MS.gene073648.t1 | MTR_1g035460 | 29.180 | 305 | 174 | 8 | 27 | 300 | 2 | 295 | 6.44e-30 | 117 |
MS.gene073648.t1 | MTR_3g061320 | 29.352 | 293 | 174 | 10 | 9 | 291 | 10 | 279 | 1.85e-29 | 113 |
MS.gene073648.t1 | MTR_3g061370 | 29.966 | 297 | 178 | 11 | 6 | 291 | 4 | 281 | 1.91e-29 | 113 |
MS.gene073648.t1 | MTR_6g061070 | 28.659 | 328 | 199 | 10 | 5 | 303 | 12 | 333 | 2.81e-29 | 116 |
MS.gene073648.t1 | MTR_7g050720 | 29.773 | 309 | 189 | 10 | 9 | 291 | 8 | 314 | 2.85e-29 | 114 |
MS.gene073648.t1 | MTR_7g050710 | 29.333 | 300 | 164 | 9 | 9 | 277 | 11 | 293 | 4.22e-29 | 114 |
MS.gene073648.t1 | MTR_3g061340 | 30.605 | 281 | 164 | 12 | 11 | 284 | 12 | 268 | 8.10e-28 | 109 |
MS.gene073648.t1 | MTR_1g035640 | 30.435 | 276 | 176 | 9 | 20 | 290 | 14 | 278 | 2.87e-27 | 110 |
MS.gene073648.t1 | MTR_1g035570 | 30.208 | 288 | 172 | 9 | 20 | 285 | 14 | 294 | 3.74e-27 | 109 |
MS.gene073648.t1 | MTR_8g103940 | 27.331 | 311 | 199 | 10 | 9 | 300 | 37 | 339 | 3.79e-27 | 110 |
MS.gene073648.t1 | MTR_1g108780 | 26.207 | 290 | 186 | 8 | 27 | 296 | 13 | 294 | 4.29e-27 | 110 |
MS.gene073648.t1 | MTR_7g050580 | 28.261 | 276 | 181 | 6 | 9 | 277 | 11 | 276 | 6.69e-27 | 107 |
MS.gene073648.t1 | MTR_1g035620 | 30.070 | 286 | 156 | 9 | 11 | 279 | 9 | 267 | 1.78e-26 | 108 |
MS.gene073648.t1 | MTR_3g061330 | 28.689 | 244 | 151 | 8 | 9 | 246 | 10 | 236 | 7.36e-25 | 100 |
MS.gene073648.t1 | MTR_7g050590 | 29.213 | 267 | 171 | 7 | 27 | 277 | 2 | 266 | 2.68e-23 | 97.4 |
MS.gene073648.t1 | MTR_1g033740 | 34.320 | 169 | 97 | 6 | 5 | 165 | 16 | 178 | 1.69e-20 | 87.8 |
MS.gene073648.t1 | MTR_1g035510 | 32.075 | 212 | 123 | 7 | 27 | 226 | 2 | 204 | 1.81e-20 | 88.2 |
MS.gene073648.t1 | MTR_1g050845 | 26.909 | 275 | 167 | 8 | 11 | 279 | 9 | 255 | 2.59e-20 | 91.7 |
MS.gene073648.t1 | MTR_3g061290 | 38.000 | 150 | 81 | 7 | 9 | 149 | 10 | 156 | 3.95e-20 | 86.7 |
MS.gene073648.t1 | MTR_1g035480 | 37.607 | 117 | 69 | 3 | 6 | 122 | 12 | 124 | 1.62e-19 | 84.7 |
MS.gene073648.t1 | MTR_5g070440 | 27.797 | 295 | 171 | 10 | 1 | 291 | 11 | 267 | 2.59e-19 | 86.3 |
MS.gene073648.t1 | MTR_1g035500 | 32.738 | 168 | 92 | 6 | 5 | 161 | 19 | 176 | 8.98e-19 | 82.8 |
MS.gene073648.t1 | MTR_3g005490 | 25.667 | 300 | 158 | 11 | 3 | 291 | 13 | 258 | 3.12e-18 | 82.8 |
MS.gene073648.t1 | MTR_1g021360 | 26.370 | 292 | 175 | 11 | 9 | 277 | 182 | 456 | 7.79e-18 | 84.0 |
MS.gene073648.t1 | MTR_1g035520 | 26.733 | 303 | 172 | 12 | 27 | 291 | 88 | 378 | 1.00e-17 | 83.2 |
MS.gene073648.t1 | MTR_3g005480 | 23.986 | 296 | 169 | 10 | 5 | 293 | 15 | 261 | 1.11e-16 | 78.6 |
MS.gene073648.t1 | MTR_1g035470 | 31.544 | 149 | 79 | 5 | 27 | 165 | 2 | 137 | 4.18e-16 | 74.3 |
MS.gene073648.t1 | MTR_1g035650 | 30.114 | 176 | 114 | 5 | 11 | 182 | 9 | 179 | 5.86e-16 | 75.5 |
MS.gene073648.t1 | MTR_3g005460 | 24.407 | 295 | 153 | 9 | 2 | 289 | 16 | 247 | 6.74e-16 | 78.2 |
MS.gene073648.t1 | MTR_3g005460 | 23.232 | 297 | 178 | 10 | 9 | 293 | 260 | 518 | 4.56e-13 | 69.7 |
MS.gene073648.t1 | MTR_1g021435 | 24.695 | 328 | 183 | 14 | 9 | 277 | 20 | 342 | 1.62e-15 | 76.6 |
MS.gene073648.t1 | MTR_1g021380 | 26.403 | 303 | 185 | 12 | 9 | 277 | 20 | 318 | 1.21e-14 | 73.9 |
MS.gene073648.t1 | MTR_1g021400 | 23.724 | 333 | 168 | 13 | 9 | 277 | 28 | 338 | 3.67e-14 | 72.4 |
MS.gene073648.t1 | MTR_3g005420 | 25.000 | 288 | 170 | 10 | 10 | 291 | 288 | 535 | 6.72e-13 | 69.3 |
MS.gene073648.t1 | MTR_3g005495 | 29.775 | 178 | 112 | 4 | 10 | 175 | 242 | 418 | 9.92e-13 | 68.6 |
MS.gene073648.t1 | MTR_7g050640 | 36.275 | 102 | 64 | 1 | 10 | 111 | 12 | 112 | 7.51e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073648.t1 | AT3G18990 | 25.723 | 346 | 190 | 11 | 11 | 298 | 6 | 342 | 1.32e-20 | 91.3 |
MS.gene073648.t1 | AT3G18990 | 25.602 | 332 | 181 | 10 | 11 | 284 | 6 | 329 | 1.93e-20 | 90.5 |
MS.gene073648.t1 | AT3G18960 | 35.644 | 101 | 64 | 1 | 11 | 111 | 30 | 129 | 1.28e-15 | 74.7 |
MS.gene073648.t1 | AT3G18960 | 35.644 | 101 | 64 | 1 | 11 | 111 | 30 | 129 | 1.49e-15 | 73.9 |
MS.gene073648.t1 | AT1G49475 | 36.036 | 111 | 69 | 2 | 11 | 121 | 34 | 142 | 1.54e-14 | 71.2 |
MS.gene073648.t1 | AT4G01580 | 33.663 | 101 | 66 | 1 | 11 | 111 | 30 | 129 | 2.48e-14 | 70.5 |
MS.gene073648.t1 | AT4G33280 | 23.549 | 293 | 187 | 6 | 24 | 291 | 36 | 316 | 4.11e-14 | 72.4 |
MS.gene073648.t1 | AT3G18960 | 36.471 | 85 | 53 | 1 | 27 | 111 | 9 | 92 | 1.31e-11 | 62.8 |
Find 37 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGGAAACCTTAGAGTAAT+TGG | 0.167691 | 1.1:-35230211 | None:intergenic |
ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1.1:-35231178 | None:intergenic |
GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1.1:+35231263 | MS.gene073648:CDS |
CTCTATCAATGTATGACTTT+TGG | 0.220204 | 1.1:-35230794 | None:intergenic |
TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1.1:-35231374 | None:intergenic |
CTTCGTCATCACGGGGTAAA+AGG | 0.257683 | 1.1:+35230482 | MS.gene073648:CDS |
GTCTTTAATGTGATTGTATT+CGG | 0.287311 | 1.1:+35230370 | MS.gene073648:CDS |
AAGTAGTTGTGATGATATTA+AGG | 0.299219 | 1.1:+35230698 | MS.gene073648:CDS |
TTCTTACAAACTTTCATAGA+TGG | 0.310675 | 1.1:-35230520 | None:intergenic |
TAACAAACCCAATTACTCTA+AGG | 0.340216 | 1.1:+35230203 | MS.gene073648:CDS |
ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1.1:-35231259 | None:intergenic |
GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1.1:-35231329 | None:intergenic |
TTTCTCTTTGGAAAAGGACT+TGG | 0.399841 | 1.1:+35231346 | MS.gene073648:CDS |
TGTGTCTTAACAAATTCATT+TGG | 0.404885 | 1.1:-35231122 | None:intergenic |
TCTTCCCTAGTTTCCCTTGA+CGG | 0.431417 | 1.1:-35230418 | None:intergenic |
TGAATTTGTTAAGACACATA+TGG | 0.433535 | 1.1:+35231127 | MS.gene073648:CDS |
CTTCCCTAGTTTCCCTTGAC+GGG | 0.436079 | 1.1:-35230417 | None:intergenic |
AATACCCGTCAAGGGAAACT+AGG | 0.440974 | 1.1:+35230413 | MS.gene073648:CDS |
TTGGAAACCTTAGAGTAATT+GGG | 0.442652 | 1.1:-35230210 | None:intergenic |
TGAGAATCCTTCGTCATCAC+GGG | 0.459175 | 1.1:+35230474 | MS.gene073648:CDS |
TACTCTAAGGTTTCCAAACA+TGG | 0.467994 | 1.1:+35230216 | MS.gene073648:CDS |
TAGAAATAAAATACCCGTCA+AGG | 0.496387 | 1.1:+35230404 | MS.gene073648:CDS |
TTGAGAATCCTTCGTCATCA+CGG | 0.526374 | 1.1:+35230473 | MS.gene073648:CDS |
ATACATTGATAGAGATCGCT+TGG | 0.539899 | 1.1:+35230803 | MS.gene073648:CDS |
TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1.1:+35230178 | MS.gene073648:CDS |
ATACCCGTCAAGGGAAACTA+GGG | 0.567040 | 1.1:+35230414 | MS.gene073648:CDS |
AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1.1:+35231228 | MS.gene073648:CDS |
TAAGACACATATGGACATGA+TGG | 0.584937 | 1.1:+35231136 | MS.gene073648:CDS |
AGAAATAAAATACCCGTCAA+GGG | 0.586699 | 1.1:+35230405 | MS.gene073648:CDS |
AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1.1:+35231224 | MS.gene073648:CDS |
ATGTCTTCTCAAGAGAGTAA+TGG | 0.609709 | 1.1:+35229747 | MS.gene073648:CDS |
ATTACTCTCTTGAGAAGACA+TGG | 0.618980 | 1.1:-35229745 | None:intergenic |
GTGATTGTATTCGGTAAATG+CGG | 0.620340 | 1.1:+35230379 | MS.gene073648:CDS |
ACACATATGGACATGATGGA+AGG | 0.627742 | 1.1:+35231140 | MS.gene073648:CDS |
TCTAAGGTTTCCAAACATGG+TGG | 0.644869 | 1.1:+35230219 | MS.gene073648:CDS |
AAGCGTGAGCATGTGAACAA+TGG | 0.701161 | 1.1:+35230577 | MS.gene073648:CDS |
GAGAATCCTTCGTCATCACG+GGG | 0.717191 | 1.1:+35230475 | MS.gene073648:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AACAATTTATGAAAATTTTA+TGG | + | chr1.1:35231450-35231469 | MS.gene073648:intron | 10.0% |
!! | TATAATTTACCTTCAAAATA+AGG | - | chr1.1:35231377-35231396 | None:intergenic | 15.0% |
!!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1.1:35230652-35230671 | MS.gene073648:intron | 15.0% |
!! | AACTATATGTGTGTATTTAT+AGG | + | chr1.1:35231094-35231113 | MS.gene073648:intron | 20.0% |
!! | AATAATGATTGTTCGAATAT+CGG | + | chr1.1:35230005-35230024 | MS.gene073648:intron | 20.0% |
!! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1.1:35231181-35231200 | None:intergenic | 20.0% |
!! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1.1:35231262-35231281 | None:intergenic | 20.0% |
!! | CAATATAATAATTCATGTGT+TGG | + | chr1.1:35231495-35231514 | MS.gene073648:intron | 20.0% |
!! | GGAATTTCATTTAATATGAT+GGG | + | chr1.1:35231414-35231433 | MS.gene073648:intron | 20.0% |
!! | TAAATATGCATTGCAAAATT+TGG | + | chr1.1:35229865-35229884 | MS.gene073648:intron | 20.0% |
!! | TTACATATTGTGAAAAATCA+AGG | - | chr1.1:35229848-35229867 | None:intergenic | 20.0% |
!! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1.1:35231180-35231199 | None:intergenic | 20.0% |
!!! | CTTTAAAAATACCTACATAA+TGG | + | chr1.1:35230970-35230989 | MS.gene073648:intron | 20.0% |
!!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1.1:35231263-35231282 | MS.gene073648:CDS | 20.0% |
!!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1.1:35230675-35230694 | MS.gene073648:intron | 20.0% |
!!! | TTTGAATGAATCACAATTTT+TGG | + | chr1.1:35230324-35230343 | MS.gene073648:CDS | 20.0% |
!!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1.1:35231180-35231199 | MS.gene073648:CDS | 20.0% |
! | AAGTAGTTGTGATGATATTA+AGG | + | chr1.1:35230698-35230717 | MS.gene073648:CDS | 25.0% |
! | AATATAGCAAAGTCCAATTA+TGG | - | chr1.1:35230936-35230955 | None:intergenic | 25.0% |
! | CATATTAAATGAAATTCCGA+TGG | - | chr1.1:35231412-35231431 | None:intergenic | 25.0% |
! | CCAAATTAGTATACCATAAT+TGG | + | chr1.1:35230920-35230939 | MS.gene073648:intron | 25.0% |
! | CCAATTATGGTATACTAATT+TGG | - | chr1.1:35230923-35230942 | None:intergenic | 25.0% |
! | CGGAATTTCATTTAATATGA+TGG | + | chr1.1:35231413-35231432 | MS.gene073648:intron | 25.0% |
! | GAGAAAATAACAACTTGAAA+TGG | - | chr1.1:35231332-35231351 | None:intergenic | 25.0% |
! | GTCTTTAATGTGATTGTATT+CGG | + | chr1.1:35230370-35230389 | MS.gene073648:CDS | 25.0% |
! | TATATTTGATTAGTGTCCAT+CGG | + | chr1.1:35231393-35231412 | MS.gene073648:intron | 25.0% |
! | TGTGTCTTAACAAATTCATT+TGG | - | chr1.1:35231125-35231144 | None:intergenic | 25.0% |
! | TTCTTACAAACTTTCATAGA+TGG | - | chr1.1:35230523-35230542 | None:intergenic | 25.0% |
!! | ATACCTTTTCACAAAACTTA+TGG | - | chr1.1:35230173-35230192 | None:intergenic | 25.0% |
!! | TACCTTTTCACAAAACTTAT+GGG | - | chr1.1:35230172-35230191 | None:intergenic | 25.0% |
!! | TATGAAGTTATGTTTTGCAA+TGG | + | chr1.1:35230274-35230293 | MS.gene073648:CDS | 25.0% |
!!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1.1:35230173-35230192 | MS.gene073648:CDS | 25.0% |
!!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1.1:35231334-35231353 | MS.gene073648:CDS | 25.0% |
!!! | TGAATTTGTTAAGACACATA+TGG | + | chr1.1:35231127-35231146 | MS.gene073648:CDS | 25.0% |
!!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1.1:35231340-35231359 | MS.gene073648:CDS | 25.0% |
AGAAATAAAATACCCGTCAA+GGG | + | chr1.1:35230405-35230424 | MS.gene073648:CDS | 30.0% | |
GAAAAAATTCGACTCTGATA+AGG | + | chr1.1:35230752-35230771 | MS.gene073648:CDS | 30.0% | |
GACGAATAACCTTAAAAAAG+TGG | - | chr1.1:35229776-35229795 | None:intergenic | 30.0% | |
TAACAAACCCAATTACTCTA+AGG | + | chr1.1:35230203-35230222 | MS.gene073648:CDS | 30.0% | |
TAGAAATAAAATACCCGTCA+AGG | + | chr1.1:35230404-35230423 | MS.gene073648:CDS | 30.0% | |
TTGGAAACCTTAGAGTAATT+GGG | - | chr1.1:35230213-35230232 | None:intergenic | 30.0% | |
TTTGGAAACCTTAGAGTAAT+TGG | - | chr1.1:35230214-35230233 | None:intergenic | 30.0% | |
! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1.1:35230278-35230297 | MS.gene073648:CDS | 30.0% |
! | CTCTATCAATGTATGACTTT+TGG | - | chr1.1:35230797-35230816 | None:intergenic | 30.0% |
! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1.1:35229805-35229824 | None:intergenic | 30.0% |
! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1.1:35229806-35229825 | None:intergenic | 30.0% |
!! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1.1:35231293-35231312 | MS.gene073648:CDS | 30.0% |
!! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1.1:35230178-35230197 | MS.gene073648:CDS | 30.0% |
!!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1.1:35230743-35230762 | None:intergenic | 30.0% |
!!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1.1:35230237-35230256 | MS.gene073648:CDS | 30.0% |
!!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1.1:35229764-35229783 | MS.gene073648:CDS | 30.0% |
!!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1.1:35230236-35230255 | MS.gene073648:CDS | 30.0% |
!!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1.1:35231365-35231384 | MS.gene073648:CDS | 30.0% |
AAACAATCTGCACTAACTTG+TGG | + | chr1.1:35231224-35231243 | MS.gene073648:CDS | 35.0% | |
AATGATTGTTCGAATATCGG+TGG | + | chr1.1:35230008-35230027 | MS.gene073648:intron | 35.0% | |
ATACATTGATAGAGATCGCT+TGG | + | chr1.1:35230803-35230822 | MS.gene073648:CDS | 35.0% | |
ATGTCTTCTCAAGAGAGTAA+TGG | + | chr1.1:35229747-35229766 | MS.gene073648:CDS | 35.0% | |
CCAATCACAATCCATTATGT+AGG | - | chr1.1:35230984-35231003 | None:intergenic | 35.0% | |
GTGATTGTATTCGGTAAATG+CGG | + | chr1.1:35230379-35230398 | MS.gene073648:CDS | 35.0% | |
TAAGACACATATGGACATGA+TGG | + | chr1.1:35231136-35231155 | MS.gene073648:CDS | 35.0% | |
TACCCTTCAAGAAGAAAAAC+TGG | + | chr1.1:35229800-35229819 | MS.gene073648:CDS | 35.0% | |
! | ACTTTCTTTTCCACCATGTT+TGG | - | chr1.1:35230232-35230251 | None:intergenic | 35.0% |
! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1.1:35231346-35231365 | MS.gene073648:CDS | 35.0% |
!! | CCTACATAATGGATTGTGAT+TGG | + | chr1.1:35230981-35231000 | MS.gene073648:intron | 35.0% |
!! | TACTCTAAGGTTTCCAAACA+TGG | + | chr1.1:35230216-35230235 | MS.gene073648:CDS | 35.0% |
!! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1.1:35230167-35230186 | MS.gene073648:CDS | 35.0% |
TCATGTGTTGGACTATTGCA+GGG | + | chr1.1:35231507-35231526 | MS.gene073648:intron | 40.0% | |
TTCATGTGTTGGACTATTGC+AGG | + | chr1.1:35231506-35231525 | MS.gene073648:intron | 40.0% | |
TTGAGAATCCTTCGTCATCA+CGG | + | chr1.1:35230473-35230492 | MS.gene073648:CDS | 40.0% | |
! | AATCTGCACTAACTTGTGGT+TGG | + | chr1.1:35231228-35231247 | MS.gene073648:CDS | 40.0% |
! | ACACATATGGACATGATGGA+AGG | + | chr1.1:35231140-35231159 | MS.gene073648:CDS | 40.0% |
! | TCTAAGGTTTCCAAACATGG+TGG | + | chr1.1:35230219-35230238 | MS.gene073648:CDS | 40.0% |
AAGCGTGAGCATGTGAACAA+TGG | + | chr1.1:35230577-35230596 | MS.gene073648:CDS | 45.0% | |
AATACCCGTCAAGGGAAACT+AGG | + | chr1.1:35230413-35230432 | MS.gene073648:CDS | 45.0% | |
ATACCCGTCAAGGGAAACTA+GGG | + | chr1.1:35230414-35230433 | MS.gene073648:CDS | 45.0% | |
GTGAGCATGTGAACAATGGT+TGG | + | chr1.1:35230581-35230600 | MS.gene073648:intron | 45.0% | |
TCTTCCCTAGTTTCCCTTGA+CGG | - | chr1.1:35230421-35230440 | None:intergenic | 45.0% | |
TGAGAATCCTTCGTCATCAC+GGG | + | chr1.1:35230474-35230493 | MS.gene073648:CDS | 45.0% | |
CTTCCCTAGTTTCCCTTGAC+GGG | - | chr1.1:35230420-35230439 | None:intergenic | 50.0% | |
CTTCGTCATCACGGGGTAAA+AGG | + | chr1.1:35230482-35230501 | MS.gene073648:CDS | 50.0% | |
GAGAATCCTTCGTCATCACG+GGG | + | chr1.1:35230475-35230494 | MS.gene073648:CDS | 50.0% | |
GTGTTGGACTATTGCAGGGT+TGG | + | chr1.1:35231511-35231530 | MS.gene073648:intron | 50.0% | |
!! | CTTTTACCCCGTGATGACGA+AGG | - | chr1.1:35230484-35230503 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 35229747 | 35231538 | 35229747 | ID=MS.gene073648 |
chr1.1 | mRNA | 35229747 | 35231538 | 35229747 | ID=MS.gene073648.t1;Parent=MS.gene073648 |
chr1.1 | exon | 35229747 | 35229821 | 35229747 | ID=MS.gene073648.t1.exon1;Parent=MS.gene073648.t1 |
chr1.1 | CDS | 35229747 | 35229821 | 35229747 | ID=cds.MS.gene073648.t1;Parent=MS.gene073648.t1 |
chr1.1 | exon | 35230163 | 35230598 | 35230163 | ID=MS.gene073648.t1.exon2;Parent=MS.gene073648.t1 |
chr1.1 | CDS | 35230163 | 35230598 | 35230163 | ID=cds.MS.gene073648.t1;Parent=MS.gene073648.t1 |
chr1.1 | exon | 35230697 | 35230824 | 35230697 | ID=MS.gene073648.t1.exon3;Parent=MS.gene073648.t1 |
chr1.1 | CDS | 35230697 | 35230824 | 35230697 | ID=cds.MS.gene073648.t1;Parent=MS.gene073648.t1 |
chr1.1 | exon | 35231116 | 35231386 | 35231116 | ID=MS.gene073648.t1.exon4;Parent=MS.gene073648.t1 |
chr1.1 | CDS | 35231116 | 35231386 | 35231116 | ID=cds.MS.gene073648.t1;Parent=MS.gene073648.t1 |
chr1.1 | exon | 35231528 | 35231538 | 35231528 | ID=MS.gene073648.t1.exon5;Parent=MS.gene073648.t1 |
chr1.1 | CDS | 35231528 | 35231538 | 35231528 | ID=cds.MS.gene073648.t1;Parent=MS.gene073648.t1 |
Gene Sequence |
Protein sequence |