Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073651.t1 | KEH40804.1 | 77.1 | 310 | 64 | 3 | 35 | 337 | 89 | 398 | 1.70E-109 | 406 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073651.t1 | Q2R9D2 | 34.4 | 93 | 60 | 1 | 125 | 216 | 290 | 382 | 1.8e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073651.t1 | A0A072VFJ7 | 77.1 | 310 | 64 | 3 | 35 | 337 | 89 | 398 | 1.2e-109 | 406.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene073651.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073651.t1 | MTR_1g035570 | 79.487 | 312 | 57 | 3 | 33 | 337 | 87 | 398 | 1.33e-171 | 483 |
| MS.gene073651.t1 | MTR_1g035490 | 67.812 | 320 | 56 | 7 | 58 | 335 | 16 | 330 | 3.94e-133 | 382 |
| MS.gene073651.t1 | MTR_1g035620 | 41.317 | 334 | 146 | 11 | 33 | 332 | 91 | 408 | 3.05e-61 | 201 |
| MS.gene073651.t1 | MTR_1g035640 | 34.761 | 397 | 146 | 13 | 33 | 334 | 87 | 465 | 9.03e-50 | 172 |
| MS.gene073651.t1 | MTR_1g050845 | 40.000 | 295 | 125 | 12 | 35 | 300 | 93 | 364 | 1.63e-40 | 151 |
| MS.gene073651.t1 | MTR_6g061070 | 29.793 | 386 | 174 | 11 | 32 | 333 | 98 | 470 | 1.49e-39 | 145 |
| MS.gene073651.t1 | MTR_1g035520 | 41.489 | 94 | 51 | 3 | 244 | 333 | 290 | 383 | 5.27e-14 | 72.8 |
| MS.gene073651.t1 | MTR_7g050710 | 26.724 | 232 | 124 | 6 | 35 | 235 | 99 | 315 | 6.57e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCGGATTGGGTCGTTTC+CGG | 0.165945 | 1.1:+35246516 | None:intergenic |
| CAAGCTCAAAGGACAATAAA+AGG | 0.217300 | 1.1:-35247189 | MS.gene073651:CDS |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1.1:-35246018 | MS.gene073651:CDS |
| TGATAGTGTTTCTCTATTGA+TGG | 0.293406 | 1.1:-35249062 | MS.gene073651:intron |
| GAAGCATACATTCAAGGTTT+TGG | 0.302239 | 1.1:-35246188 | MS.gene073651:CDS |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1.1:-35246856 | MS.gene073651:intron |
| GTGTTTGATGTTTCAATTGT+AGG | 0.309600 | 1.1:-35245849 | MS.gene073651:CDS |
| TTAAAGGGACTGCAACAATA+AGG | 0.310666 | 1.1:-35246717 | MS.gene073651:CDS |
| CTAGTAATTTCTTTCGGATT+GGG | 0.342779 | 1.1:+35246506 | None:intergenic |
| GAGGTGGTTGGAAAATATTC+AGG | 0.364157 | 1.1:-35246627 | MS.gene073651:CDS |
| TAAAACCTAGTAATTTCTTT+CGG | 0.364235 | 1.1:+35246500 | None:intergenic |
| CCTAGTAATTTCTTTCGGAT+TGG | 0.373001 | 1.1:+35246505 | None:intergenic |
| TAACAAAGAAAGATCTTGTA+TGG | 0.389809 | 1.1:-35246650 | MS.gene073651:CDS |
| CCAATCCGAAAGAAATTACT+AGG | 0.396990 | 1.1:-35246505 | MS.gene073651:intron |
| TACCGAATTGCCGCTGAGCT+TGG | 0.400116 | 1.1:+35249148 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1.1:+35247347 | None:intergenic |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 1.1:-35246716 | MS.gene073651:CDS |
| TTTGATGAAGCATACATTCA+AGG | 0.419004 | 1.1:-35246194 | MS.gene073651:CDS |
| ACAGCTTCAGATTGTGCCAT+TGG | 0.421914 | 1.1:+35246918 | None:intergenic |
| GAAGTGAGTTTGAGGTATTA+TGG | 0.429201 | 1.1:-35246673 | MS.gene073651:CDS |
| GAGCTTGGCTGAACTGCAAT+CGG | 0.449915 | 1.1:+35249163 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1.1:-35246017 | MS.gene073651:CDS |
| CAGCTTCAGATTGTGCCATT+GGG | 0.460205 | 1.1:+35246919 | None:intergenic |
| AAAGAATGCAATGTGGAGAT+TGG | 0.464528 | 1.1:-35245912 | MS.gene073651:CDS |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1.1:-35246952 | MS.gene073651:CDS |
| TGTTCTCTTGAAAACTCAAA+TGG | 0.468009 | 1.1:+35246751 | None:intergenic |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1.1:+35246884 | None:intergenic |
| AGCCAAGCTCAGCGGCAATT+CGG | 0.488549 | 1.1:-35249150 | MS.gene073651:intron |
| GGTGCTAAAGCCACTGAAGA+AGG | 0.489506 | 1.1:-35247300 | MS.gene073651:CDS |
| GGAGTGTGGAAGTGAGTTTG+AGG | 0.490380 | 1.1:-35246681 | MS.gene073651:CDS |
| ATGAGAGTATTCGTGGCTGC+AGG | 0.493889 | 1.1:-35245962 | MS.gene073651:CDS |
| CCAAAGGAGTTTATGAAAAG+AGG | 0.496159 | 1.1:-35246050 | MS.gene073651:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1.1:+35246885 | None:intergenic |
| CGTGGCTGCAGGTTCAGTAA+AGG | 0.507598 | 1.1:-35245951 | MS.gene073651:CDS |
| CAATAAGGGTTGGTAAAGAA+AGG | 0.509993 | 1.1:-35246702 | MS.gene073651:CDS |
| AATTATTATGAGAGTATTCG+TGG | 0.512630 | 1.1:-35245969 | MS.gene073651:CDS |
| ACTTTCTTTACCTTCTTCAG+TGG | 0.514754 | 1.1:+35247290 | None:intergenic |
| ATTGTCACTATTACTCGTGC+CGG | 0.525079 | 1.1:-35246535 | MS.gene073651:CDS |
| AAGCTCAAAGGACAATAAAA+GGG | 0.530769 | 1.1:-35247188 | MS.gene073651:CDS |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1.1:-35246030 | MS.gene073651:CDS |
| ATAGTGACAATGAATGAAAA+CGG | 0.533216 | 1.1:+35246547 | None:intergenic |
| GATCTTGTATGGGAGGTGGT+TGG | 0.547438 | 1.1:-35246639 | MS.gene073651:CDS |
| AAAGTATAATTTGCAAGTTG+AGG | 0.553539 | 1.1:-35246602 | MS.gene073651:CDS |
| AAAGGGAAGAGAAAATTCTC+AGG | 0.557828 | 1.1:-35247171 | MS.gene073651:intron |
| TGAAAATGGGGAGGAAGTCA+TGG | 0.563749 | 1.1:-35246004 | MS.gene073651:CDS |
| GAAAGATCTTGTATGGGAGG+TGG | 0.571003 | 1.1:-35246643 | MS.gene073651:CDS |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1.1:-35246170 | MS.gene073651:intron |
| AACGACACTGCCATGTCTGT+TGG | 0.574077 | 1.1:+35249189 | None:intergenic |
| AACAAAGAAAGATCTTGTAT+GGG | 0.582045 | 1.1:-35246649 | MS.gene073651:CDS |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.582904 | 1.1:-35246961 | MS.gene073651:CDS |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1.1:+35246851 | None:intergenic |
| GTAAATTTGAGATGATTCAA+CGG | 0.588165 | 1.1:-35246573 | MS.gene073651:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 1.1:-35246712 | MS.gene073651:CDS |
| GCTGCAGGTTCAGTAAAGGT+TGG | 0.590118 | 1.1:-35245947 | MS.gene073651:CDS |
| GTATTTGCAGAGTGCACCAA+AGG | 0.590998 | 1.1:-35246066 | MS.gene073651:intron |
| AAAGAAAGATCTTGTATGGG+AGG | 0.599987 | 1.1:-35246646 | MS.gene073651:CDS |
| GGTTGGTAAAGAAAGGAGTG+TGG | 0.602290 | 1.1:-35246695 | MS.gene073651:CDS |
| AGGTGGTTGGAAAATATTCA+GGG | 0.606836 | 1.1:-35246626 | MS.gene073651:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1.1:-35246867 | MS.gene073651:CDS |
| AAATGTCAAAGCAAGCTCAA+AGG | 0.625671 | 1.1:-35247200 | MS.gene073651:CDS |
| AAGTGATGAAGAGAGTGATG+AGG | 0.629681 | 1.1:-35247226 | MS.gene073651:CDS |
| TTGTGGAGTTGAAAATGGGG+AGG | 0.632079 | 1.1:-35246013 | MS.gene073651:CDS |
| CTTTACAGGTAGTAACAAAG+TGG | 0.648804 | 1.1:-35246967 | MS.gene073651:intron |
| TCATCTTCATCCAACAGACA+TGG | 0.668320 | 1.1:-35249199 | MS.gene073651:CDS |
| TGCAGTTCAGCCAAGCTCAG+CGG | 0.670925 | 1.1:-35249158 | MS.gene073651:CDS |
| GAAGGCTAGAAAATACCCAA+TGG | 0.687317 | 1.1:-35246934 | MS.gene073651:CDS |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1.1:-35246016 | MS.gene073651:CDS |
| ATTCATGAAAGAATGCAATG+TGG | 0.699756 | 1.1:-35245919 | MS.gene073651:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACATATAATATATAGTT+AGG | + | chr1.1:35248703-35248722 | None:intergenic | 10.0% |
| !!! | AAATTTTTTTTTAATATGCA+AGG | + | chr1.1:35246370-35246389 | None:intergenic | 10.0% |
| !!! | ATAAAAATATGTGATTTTTT+TGG | - | chr1.1:35247972-35247991 | MS.gene073651:intron | 10.0% |
| !!! | GCATATTAAAAAAAAATTTT+GGG | - | chr1.1:35246371-35246390 | MS.gene073651:intron | 10.0% |
| !!! | TGAAGAAAAAATTAAATTTT+GGG | - | chr1.1:35246179-35246198 | MS.gene073651:CDS | 10.0% |
| !!! | TGCATATTAAAAAAAAATTT+TGG | - | chr1.1:35246370-35246389 | MS.gene073651:intron | 10.0% |
| !!! | TGTATGTTATAATTTTTTTA+TGG | - | chr1.1:35248593-35248612 | MS.gene073651:intron | 10.0% |
| !!! | TTGAAGAAAAAATTAAATTT+TGG | - | chr1.1:35246178-35246197 | MS.gene073651:CDS | 10.0% |
| !!! | AATGTTTATATTTGTGATTT+TGG | - | chr1.1:35246669-35246688 | MS.gene073651:CDS | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1.1:35247697-35247716 | None:intergenic | 15.0% |
| !!! | ATTTTCTATCTAATATTTTC+TGG | + | chr1.1:35247056-35247075 | None:intergenic | 15.0% |
| !!! | CAAATAACTCTAAAATTTTT+GGG | - | chr1.1:35248758-35248777 | MS.gene073651:intron | 15.0% |
| !!! | TATTTTAAGGTTAAGATATA+TGG | - | chr1.1:35247669-35247688 | MS.gene073651:intron | 15.0% |
| !!! | TCAAATAACTCTAAAATTTT+TGG | - | chr1.1:35248757-35248776 | MS.gene073651:intron | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1.1:35247545-35247564 | MS.gene073651:intron | 15.0% |
| !! | AAATAATCTCTAAACTTTAC+AGG | - | chr1.1:35248060-35248079 | MS.gene073651:intron | 20.0% |
| !! | AATTCAAAAACTGAAAGAAT+AGG | - | chr1.1:35246053-35246072 | MS.gene073651:CDS | 20.0% |
| !! | ATATAAAAATGGCAGATTAA+GGG | - | chr1.1:35246864-35246883 | MS.gene073651:CDS | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1.1:35247522-35247541 | MS.gene073651:intron | 20.0% |
| !! | TAAAACCTAGTAATTTCTTT+CGG | + | chr1.1:35248544-35248563 | None:intergenic | 20.0% |
| !! | TATATAAAAATGGCAGATTA+AGG | - | chr1.1:35246863-35246882 | MS.gene073651:CDS | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1.1:35247521-35247540 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1.1:35247522-35247541 | None:intergenic | 20.0% |
| !!! | AAATATGTGATTTTTTTGGA+AGG | - | chr1.1:35247976-35247995 | MS.gene073651:intron | 20.0% |
| !!! | AACACTTGAAAGATTTTAAA+GGG | - | chr1.1:35248309-35248328 | MS.gene073651:intron | 20.0% |
| !!! | AATATCAAATCAGTTTTTGA+AGG | - | chr1.1:35247720-35247739 | MS.gene073651:intron | 20.0% |
| !!! | ATATTTGGTTTCAAAAAAAC+TGG | - | chr1.1:35247583-35247602 | MS.gene073651:intron | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1.1:35247544-35247563 | MS.gene073651:intron | 20.0% |
| !!! | TAAAGACATTTTTTGTAGTA+TGG | + | chr1.1:35247135-35247154 | None:intergenic | 20.0% |
| !!! | TAATCTGCCATTTTTATATA+AGG | + | chr1.1:35246863-35246882 | None:intergenic | 20.0% |
| !!! | TATTTGGTTTCAAAAAAACT+GGG | - | chr1.1:35247584-35247603 | MS.gene073651:intron | 20.0% |
| !!! | TGCCTCATTTTAATTTTTTA+GGG | + | chr1.1:35246205-35246224 | None:intergenic | 20.0% |
| !!! | TGTTTTGTAATTCTTCAATT+TGG | - | chr1.1:35245950-35245969 | MS.gene073651:CDS | 20.0% |
| !!! | TTCAAAAACTGATTTGATAT+TGG | + | chr1.1:35247721-35247740 | None:intergenic | 20.0% |
| !!! | TTTTATGTAATTAATCCTAC+CGG | + | chr1.1:35248893-35248912 | None:intergenic | 20.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1.1:35249023-35249042 | MS.gene073651:intron | 25.0% |
| ! | AACAAAGAAAGATCTTGTAT+GGG | - | chr1.1:35248392-35248411 | MS.gene073651:intron | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1.1:35247624-35247643 | None:intergenic | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | + | chr1.1:35247316-35247335 | None:intergenic | 25.0% |
| ! | AATAAAAAAAATTGCCCAAG+TGG | - | chr1.1:35246228-35246247 | MS.gene073651:intron | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1.1:35249024-35249043 | MS.gene073651:intron | 25.0% |
| ! | AGATATATGTGGAGAAATAT+TGG | - | chr1.1:35247481-35247500 | MS.gene073651:intron | 25.0% |
| ! | ATAAAAAAAATTGCCCAAGT+GGG | - | chr1.1:35246229-35246248 | MS.gene073651:intron | 25.0% |
| ! | ATAGTGACAATGAATGAAAA+CGG | + | chr1.1:35248497-35248516 | None:intergenic | 25.0% |
| ! | ATATCTACTAAACCATGATT+TGG | - | chr1.1:35248256-35248275 | MS.gene073651:intron | 25.0% |
| ! | ATATTACACTAAACCAAAAG+TGG | - | chr1.1:35246272-35246291 | MS.gene073651:intron | 25.0% |
| ! | ATGGACAAGATTATAAGAAA+GGG | - | chr1.1:35248612-35248631 | MS.gene073651:intron | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1.1:35247639-35247658 | MS.gene073651:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1.1:35248159-35248178 | None:intergenic | 25.0% |
| ! | GTTCAATGGATATTATTGTT+AGG | - | chr1.1:35246075-35246094 | MS.gene073651:intron | 25.0% |
| ! | TAAAAAAAGAAACTGAATCC+TGG | + | chr1.1:35248672-35248691 | None:intergenic | 25.0% |
| ! | TAACAAAGAAAGATCTTGTA+TGG | - | chr1.1:35248391-35248410 | MS.gene073651:intron | 25.0% |
| ! | TATGGACAAGATTATAAGAA+AGG | - | chr1.1:35248611-35248630 | MS.gene073651:intron | 25.0% |
| ! | TATTTCTCCACATATATCTT+AGG | + | chr1.1:35247480-35247499 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1.1:35248160-35248179 | None:intergenic | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1.1:35247642-35247661 | MS.gene073651:intron | 25.0% |
| ! | TTGGCTATATTAGATTTACA+AGG | + | chr1.1:35246950-35246969 | None:intergenic | 25.0% |
| ! | TTGTGATGATATACACAAAT+AGG | - | chr1.1:35246759-35246778 | MS.gene073651:CDS | 25.0% |
| ! | TTTATGTAATTAATCCTACC+GGG | + | chr1.1:35248892-35248911 | None:intergenic | 25.0% |
| !! | AAAGTATAATTTGCAAGTTG+AGG | - | chr1.1:35248439-35248458 | MS.gene073651:intron | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+AGG | - | chr1.1:35248308-35248327 | MS.gene073651:intron | 25.0% |
| !! | GTAAATTTGAGATGATTCAA+CGG | - | chr1.1:35248468-35248487 | MS.gene073651:intron | 25.0% |
| !!! | AATTATTATGAGAGTATTCG+TGG | - | chr1.1:35249072-35249091 | MS.gene073651:intron | 25.0% |
| !!! | GTGCCTCATTTTAATTTTTT+AGG | + | chr1.1:35246206-35246225 | None:intergenic | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1.1:35247548-35247567 | MS.gene073651:intron | 25.0% |
| AAACCTTAAATGACCAAAAC+CGG | + | chr1.1:35246160-35246179 | None:intergenic | 30.0% | |
| AACTGAAAGAATAGGTTCAA+TGG | - | chr1.1:35246061-35246080 | MS.gene073651:intron | 30.0% | |
| AAGCTCAAAGGACAATAAAA+GGG | - | chr1.1:35247853-35247872 | MS.gene073651:intron | 30.0% | |
| AATCAACGTGACATAATAAC+AGG | + | chr1.1:35246325-35246344 | None:intergenic | 30.0% | |
| AGGATGTCATGAAAATATTG+TGG | - | chr1.1:35249011-35249030 | MS.gene073651:intron | 30.0% | |
| AGTGTAATATGTCATGTCAT+GGG | + | chr1.1:35246262-35246281 | None:intergenic | 30.0% | |
| AGTTGTGATGATTCACAAAT+AGG | - | chr1.1:35246541-35246560 | MS.gene073651:CDS | 30.0% | |
| AGTTTAGGCTTGTAAATCTA+AGG | - | chr1.1:35247895-35247914 | MS.gene073651:intron | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1.1:35249025-35249044 | MS.gene073651:intron | 30.0% | |
| ATTCATGAAAGAATGCAATG+TGG | - | chr1.1:35249122-35249141 | MS.gene073651:intron | 30.0% | |
| CTAGTAATTTCTTTCGGATT+GGG | + | chr1.1:35248538-35248557 | None:intergenic | 30.0% | |
| CTGAATTTCTTTATTGCAGA+GGG | - | chr1.1:35247452-35247471 | MS.gene073651:intron | 30.0% | |
| GACAGCACCTTATATAAAAA+TGG | - | chr1.1:35246853-35246872 | MS.gene073651:intron | 30.0% | |
| GGCCCTAAAAAATTAAAATG+AGG | - | chr1.1:35246200-35246219 | MS.gene073651:CDS | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | - | chr1.1:35249192-35249211 | MS.gene073651:CDS | 30.0% | |
| TAGTACAATTCAGTGAAAGT+TGG | + | chr1.1:35246969-35246988 | None:intergenic | 30.0% | |
| TAGTGTAATATGTCATGTCA+TGG | + | chr1.1:35246263-35246282 | None:intergenic | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1.1:35247486-35247505 | MS.gene073651:intron | 30.0% | |
| TCTGAATTTCTTTATTGCAG+AGG | - | chr1.1:35247451-35247470 | MS.gene073651:intron | 30.0% | |
| TGGACAAGATTATAAGAAAG+GGG | - | chr1.1:35248613-35248632 | MS.gene073651:intron | 30.0% | |
| TGTTCTCTTGAAAACTCAAA+TGG | + | chr1.1:35248293-35248312 | None:intergenic | 30.0% | |
| TTATGTAATTAATCCTACCG+GGG | + | chr1.1:35248891-35248910 | None:intergenic | 30.0% | |
| TTTCACACTTTACATTTCAC+AGG | - | chr1.1:35247166-35247185 | MS.gene073651:intron | 30.0% | |
| TTTGATGAAGCATACATTCA+AGG | - | chr1.1:35248847-35248866 | MS.gene073651:intron | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1.1:35247612-35247631 | MS.gene073651:intron | 30.0% | |
| ! | AACATGTTCCAGATTTTCAT+AGG | - | chr1.1:35247305-35247324 | MS.gene073651:CDS | 30.0% |
| ! | ACTTTCTTCATCTTCTTTTG+TGG | + | chr1.1:35247799-35247818 | None:intergenic | 30.0% |
| ! | CTTTCTTCATCTTCTTTTGT+GGG | + | chr1.1:35247798-35247817 | None:intergenic | 30.0% |
| ! | TGATAGTGTTTCTCTATTGA+TGG | - | chr1.1:35245979-35245998 | MS.gene073651:CDS | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1.1:35247656-35247675 | MS.gene073651:intron | 30.0% |
| !! | TTCTAGCTTACATTGTAAGA+TGG | - | chr1.1:35246826-35246845 | MS.gene073651:intron | 30.0% |
| !!! | ATTTTCTGGTGTTACTACTT+TGG | + | chr1.1:35247042-35247061 | None:intergenic | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1.1:35247540-35247559 | None:intergenic | 30.0% |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | + | chr1.1:35246796-35246815 | None:intergenic | 30.0% |
| !!! | GACATTTTTTGTAGTATGGT+AGG | + | chr1.1:35247131-35247150 | None:intergenic | 30.0% |
| !!! | TTTTTATATAAGGTGCTGTC+TGG | + | chr1.1:35246853-35246872 | None:intergenic | 30.0% |
| AAAGAAAGATCTTGTATGGG+AGG | - | chr1.1:35248395-35248414 | MS.gene073651:intron | 35.0% | |
| AAAGAATGCAATGTGGAGAT+TGG | - | chr1.1:35249129-35249148 | MS.gene073651:intron | 35.0% | |
| AAAGGGAAGAGAAAATTCTC+AGG | - | chr1.1:35247870-35247889 | MS.gene073651:intron | 35.0% | |
| AAATGTCAAAGCAAGCTCAA+AGG | - | chr1.1:35247841-35247860 | MS.gene073651:intron | 35.0% | |
| AACCTTAAATGACCAAAACC+GGG | + | chr1.1:35246159-35246178 | None:intergenic | 35.0% | |
| AACTGAATCCTGGATAACTT+AGG | + | chr1.1:35248662-35248681 | None:intergenic | 35.0% | |
| AATGGACAGTAATGAAGTCT+TGG | - | chr1.1:35247102-35247121 | MS.gene073651:intron | 35.0% | |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1.1:35248193-35248212 | None:intergenic | 35.0% | |
| ACTTCATTACTGTCCATTAC+AGG | + | chr1.1:35247100-35247119 | None:intergenic | 35.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1.1:35247754-35247773 | None:intergenic | 35.0% | |
| AGGTGGTTGGAAAATATTCA+GGG | - | chr1.1:35248415-35248434 | MS.gene073651:intron | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1.1:35248174-35248193 | MS.gene073651:intron | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1.1:35247530-35247549 | None:intergenic | 35.0% | |
| CAAGCTCAAAGGACAATAAA+AGG | - | chr1.1:35247852-35247871 | MS.gene073651:intron | 35.0% | |
| CATATGCAATGCTAAGAACA+GGG | + | chr1.1:35246453-35246472 | None:intergenic | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+AGG | - | chr1.1:35248991-35249010 | MS.gene073651:intron | 35.0% | |
| CCAATCCGAAAGAAATTACT+AGG | - | chr1.1:35248536-35248555 | MS.gene073651:intron | 35.0% | |
| CCTAGTAATTTCTTTCGGAT+TGG | + | chr1.1:35248539-35248558 | None:intergenic | 35.0% | |
| CTTTACAGGTAGTAACAAAG+TGG | - | chr1.1:35248074-35248093 | MS.gene073651:intron | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | - | chr1.1:35247880-35247899 | MS.gene073651:intron | 35.0% | |
| GCATACACTCAAAAACACAT+TGG | + | chr1.1:35246924-35246943 | None:intergenic | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | - | chr1.1:35248325-35248344 | MS.gene073651:intron | 35.0% | |
| TCTCTACAAATGACCTGTAA+TGG | - | chr1.1:35247084-35247103 | MS.gene073651:intron | 35.0% | |
| TGGAGAGAAATGGTGATATT+TGG | - | chr1.1:35247568-35247587 | MS.gene073651:intron | 35.0% | |
| TTAAAGGGACTGCAACAATA+AGG | - | chr1.1:35248324-35248343 | MS.gene073651:intron | 35.0% | |
| TTATGCCTGTATTGTACAGA+AGG | - | chr1.1:35248818-35248837 | MS.gene073651:intron | 35.0% | |
| ! | CCTCTTTTCATAAACTCCTT+TGG | + | chr1.1:35248994-35249013 | None:intergenic | 35.0% |
| ! | GAAGCATACATTCAAGGTTT+TGG | - | chr1.1:35248853-35248872 | MS.gene073651:intron | 35.0% |
| ! | GAAGTGAGTTTGAGGTATTA+TGG | - | chr1.1:35248368-35248387 | MS.gene073651:intron | 35.0% |
| ! | GATGATAGTGAGTGAGTATT+GGG | + | chr1.1:35247267-35247286 | None:intergenic | 35.0% |
| ! | TAAACCATGATTTGGAACAG+TGG | - | chr1.1:35248264-35248283 | MS.gene073651:intron | 35.0% |
| ! | TGATGATAGTGAGTGAGTAT+TGG | + | chr1.1:35247268-35247287 | None:intergenic | 35.0% |
| !! | ACTAAGCAAATCCACTTTTG+TGG | - | chr1.1:35246782-35246801 | MS.gene073651:intron | 35.0% |
| !! | ATATTTTGGGTGGAGAGAAA+TGG | - | chr1.1:35247558-35247577 | MS.gene073651:intron | 35.0% |
| !! | CAATAAGGGTTGGTAAAGAA+AGG | - | chr1.1:35248339-35248358 | MS.gene073651:intron | 35.0% |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1.1:35248185-35248204 | MS.gene073651:intron | 35.0% |
| AAGTGATGAAGAGAGTGATG+AGG | - | chr1.1:35247815-35247834 | MS.gene073651:intron | 40.0% | |
| ATGGCAGATTAAGGGATGAA+AGG | - | chr1.1:35246872-35246891 | MS.gene073651:CDS | 40.0% | |
| ATTGTCACTATTACTCGTGC+CGG | - | chr1.1:35248506-35248525 | MS.gene073651:intron | 40.0% | |
| CGATGAAATGTTCTTAGCCA+GGG | - | chr1.1:35246112-35246131 | MS.gene073651:intron | 40.0% | |
| GAAGGCTAGAAAATACCCAA+TGG | - | chr1.1:35248107-35248126 | MS.gene073651:intron | 40.0% | |
| GAGGGTTCCTAAGATATATG+TGG | - | chr1.1:35247470-35247489 | MS.gene073651:intron | 40.0% | |
| GAGGTGGTTGGAAAATATTC+AGG | - | chr1.1:35248414-35248433 | MS.gene073651:intron | 40.0% | |
| GCATATGCAATGCTAAGAAC+AGG | + | chr1.1:35246454-35246473 | None:intergenic | 40.0% | |
| GGCCTACTAATTGCTTAAGA+CGG | + | chr1.1:35246138-35246157 | None:intergenic | 40.0% | |
| GTAACCACTGTTCCAAATCA+TGG | + | chr1.1:35248271-35248290 | None:intergenic | 40.0% | |
| GTTAGTAGCCTAAGTTATCC+AGG | - | chr1.1:35248651-35248670 | MS.gene073651:intron | 40.0% | |
| TCATCTTCATCCAACAGACA+TGG | - | chr1.1:35245842-35245861 | MS.gene073651:CDS | 40.0% | |
| TCGATGAAATGTTCTTAGCC+AGG | - | chr1.1:35246111-35246130 | MS.gene073651:intron | 40.0% | |
| TCTTAAGCAATTAGTAGGCC+CGG | - | chr1.1:35246138-35246157 | MS.gene073651:intron | 40.0% | |
| TGGCAGATTAAGGGATGAAA+GGG | - | chr1.1:35246873-35246892 | MS.gene073651:CDS | 40.0% | |
| TTTGGGCCCCAAAAAAATTG+AGG | - | chr1.1:35246388-35246407 | MS.gene073651:intron | 40.0% | |
| !! | CTTTGGTGTTGGATTGAACT+TGG | + | chr1.1:35247025-35247044 | None:intergenic | 40.0% |
| !! | GTTCAGTCTGTTTTTCTCTC+AGG | + | chr1.1:35247208-35247227 | None:intergenic | 40.0% |
| !! | TGGTGTTACTACTTTGGTGT+TGG | + | chr1.1:35247036-35247055 | None:intergenic | 40.0% |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1.1:35248100-35248119 | None:intergenic | 40.0% |
| ACAGCTTCAGATTGTGCCAT+TGG | + | chr1.1:35248126-35248145 | None:intergenic | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | - | chr1.1:35248080-35248099 | MS.gene073651:intron | 45.0% | |
| CACGACCTTCTGTACAATAC+AGG | + | chr1.1:35248826-35248845 | None:intergenic | 45.0% | |
| GAAAGATCTTGTATGGGAGG+TGG | - | chr1.1:35248398-35248417 | MS.gene073651:intron | 45.0% | |
| GGATGAAAGGGAAAGACACA+CGG | - | chr1.1:35246885-35246904 | MS.gene073651:CDS | 45.0% | |
| GGCCGTCTTAAGCAATTAGT+AGG | - | chr1.1:35246133-35246152 | MS.gene073651:intron | 45.0% | |
| GTATTTGCAGAGTGCACCAA+AGG | - | chr1.1:35248975-35248994 | MS.gene073651:intron | 45.0% | |
| TGAAAATGGGGAGGAAGTCA+TGG | - | chr1.1:35249037-35249056 | MS.gene073651:intron | 45.0% | |
| TTGTGGAGTTGAAAATGGGG+AGG | - | chr1.1:35249028-35249047 | MS.gene073651:intron | 45.0% | |
| ! | CAGCTTCAGATTGTGCCATT+GGG | + | chr1.1:35248125-35248144 | None:intergenic | 45.0% |
| !! | AGTGAGTGAGTATTGGGCTA+AGG | + | chr1.1:35247261-35247280 | None:intergenic | 45.0% |
| !! | GGTTGGTAAAGAAAGGAGTG+TGG | - | chr1.1:35248346-35248365 | MS.gene073651:intron | 45.0% |
| !!! | ACCGGGCCTCAATTTTTTTG+GGG | + | chr1.1:35246397-35246416 | None:intergenic | 45.0% |
| !!! | CACCGGGCCTCAATTTTTTT+GGG | + | chr1.1:35246398-35246417 | None:intergenic | 45.0% |
| !!! | TCACCGGGCCTCAATTTTTT+TGG | + | chr1.1:35246399-35246418 | None:intergenic | 45.0% |
| !! | AATATATGATAAAAAAAAAT+TGG | - | chr1.1:35248018-35248037 | MS.gene073651:intron | 5.0% |
| !! | ATATATATATATATATATGT+TGG | + | chr1.1:35246578-35246597 | None:intergenic | 5.0% |
| AACGACACTGCCATGTCTGT+TGG | + | chr1.1:35245855-35245874 | None:intergenic | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1.1:35248089-35248108 | MS.gene073651:intron | 50.0% | |
| CATGGGTTCAAGTCCCACTT+GGG | + | chr1.1:35246245-35246264 | None:intergenic | 50.0% | |
| CTAATTGCTTAAGACGGCCC+TGG | + | chr1.1:35246132-35246151 | None:intergenic | 50.0% | |
| GAGCTTGGCTGAACTGCAAT+CGG | + | chr1.1:35245881-35245900 | None:intergenic | 50.0% | |
| GATCTTGTATGGGAGGTGGT+TGG | - | chr1.1:35248402-35248421 | MS.gene073651:intron | 50.0% | |
| GCCCCAAAAAAATTGAGGCC+CGG | - | chr1.1:35246393-35246412 | MS.gene073651:intron | 50.0% | |
| GCTGCAGGTTCAGTAAAGGT+TGG | - | chr1.1:35249094-35249113 | MS.gene073651:intron | 50.0% | |
| GGAGTGTGGAAGTGAGTTTG+AGG | - | chr1.1:35248360-35248379 | MS.gene073651:intron | 50.0% | |
| GGCTAAGGCTTAGAGAAGTG+AGG | + | chr1.1:35247246-35247265 | None:intergenic | 50.0% | |
| GGGACTGCAACAATAAGGGT+TGG | - | chr1.1:35248329-35248348 | MS.gene073651:intron | 50.0% | |
| GGTGCTAAAGCCACTGAAGA+AGG | - | chr1.1:35247741-35247760 | MS.gene073651:intron | 50.0% | |
| TCATGGGTTCAAGTCCCACT+TGG | + | chr1.1:35246246-35246265 | None:intergenic | 50.0% | |
| TGCAATGCTAAGAACAGGGC+CGG | + | chr1.1:35246449-35246468 | None:intergenic | 50.0% | |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1.1:35248871-35248890 | MS.gene073651:intron | 50.0% | |
| ! | CTTTCGGATTGGGTCGTTTC+CGG | + | chr1.1:35248528-35248547 | None:intergenic | 50.0% |
| ! | GCAATTAGTAGGCCCGGTTT+TGG | - | chr1.1:35246144-35246163 | MS.gene073651:intron | 50.0% |
| !! | ATGAGAGTATTCGTGGCTGC+AGG | - | chr1.1:35249079-35249098 | MS.gene073651:intron | 50.0% |
| !! | GGCCCGGTTTTGGTCATTTA+AGG | - | chr1.1:35246154-35246173 | MS.gene073651:intron | 50.0% |
| AGCCAAGCTCAGCGGCAATT+CGG | - | chr1.1:35245891-35245910 | MS.gene073651:CDS | 55.0% | |
| AGCTCAGCGGCAATTCGGTA+AGG | - | chr1.1:35245896-35245915 | MS.gene073651:CDS | 55.0% | |
| CGTGGCTGCAGGTTCAGTAA+AGG | - | chr1.1:35249090-35249109 | MS.gene073651:intron | 55.0% | |
| GTTATGCACGCGAGCTGTAG+TGG | + | chr1.1:35246303-35246322 | None:intergenic | 55.0% | |
| TACCGAATTGCCGCTGAGCT+TGG | + | chr1.1:35245896-35245915 | None:intergenic | 55.0% | |
| TGCAGTTCAGCCAAGCTCAG+CGG | - | chr1.1:35245883-35245902 | MS.gene073651:CDS | 55.0% | |
| !!! | TGTAGTGGCGCTGCCACTTT+TGG | + | chr1.1:35246288-35246307 | None:intergenic | 55.0% |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1.1:35248875-35248894 | MS.gene073651:intron | 60.0% | |
| GTGACATAGCCCAGCCTCGA+CGG | - | chr1.1:35246415-35246434 | MS.gene073651:intron | 60.0% | |
| TCGAGGCTGGGCTATGTCAC+CGG | + | chr1.1:35246415-35246434 | None:intergenic | 60.0% | |
| TGACATAGCCCAGCCTCGAC+GGG | - | chr1.1:35246416-35246435 | MS.gene073651:intron | 60.0% | |
| CGAGGCTGGGCTATGTCACC+GGG | + | chr1.1:35246414-35246433 | None:intergenic | 65.0% | |
| GCCCATAGCCCGTCGAGGCT+GGG | + | chr1.1:35246427-35246446 | None:intergenic | 70.0% | |
| !! | AGCCCAGCCTCGACGGGCTA+TGG | - | chr1.1:35246422-35246441 | MS.gene073651:intron | 70.0% |
| !! | AGCCTCGACGGGCTATGGGC+CGG | - | chr1.1:35246427-35246446 | MS.gene073651:intron | 70.0% |
| !! | GCCCAGCCTCGACGGGCTAT+GGG | - | chr1.1:35246423-35246442 | MS.gene073651:intron | 70.0% |
| GGCCCATAGCCCGTCGAGGC+TGG | + | chr1.1:35246428-35246447 | None:intergenic | 75.0% | |
| ! | GGCCGGCCCATAGCCCGTCG+AGG | + | chr1.1:35246432-35246451 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 35245836 | 35249227 | 35245836 | ID=MS.gene073651 |
| chr1.1 | mRNA | 35245836 | 35249227 | 35245836 | ID=MS.gene073651.t1;Parent=MS.gene073651 |
| chr1.1 | exon | 35249151 | 35249227 | 35249151 | ID=MS.gene073651.t1.exon1;Parent=MS.gene073651.t1 |
| chr1.1 | CDS | 35249151 | 35249227 | 35249151 | ID=cds.MS.gene073651.t1;Parent=MS.gene073651.t1 |
| chr1.1 | exon | 35249054 | 35249078 | 35249054 | ID=MS.gene073651.t1.exon2;Parent=MS.gene073651.t1 |
| chr1.1 | CDS | 35249054 | 35249078 | 35249054 | ID=cds.MS.gene073651.t1;Parent=MS.gene073651.t1 |
| chr1.1 | exon | 35247172 | 35247385 | 35247172 | ID=MS.gene073651.t1.exon3;Parent=MS.gene073651.t1 |
| chr1.1 | CDS | 35247172 | 35247385 | 35247172 | ID=cds.MS.gene073651.t1;Parent=MS.gene073651.t1 |
| chr1.1 | exon | 35246857 | 35246981 | 35246857 | ID=MS.gene073651.t1.exon4;Parent=MS.gene073651.t1 |
| chr1.1 | CDS | 35246857 | 35246981 | 35246857 | ID=cds.MS.gene073651.t1;Parent=MS.gene073651.t1 |
| chr1.1 | exon | 35246506 | 35246779 | 35246506 | ID=MS.gene073651.t1.exon5;Parent=MS.gene073651.t1 |
| chr1.1 | CDS | 35246506 | 35246779 | 35246506 | ID=cds.MS.gene073651.t1;Parent=MS.gene073651.t1 |
| chr1.1 | exon | 35246171 | 35246226 | 35246171 | ID=MS.gene073651.t1.exon6;Parent=MS.gene073651.t1 |
| chr1.1 | CDS | 35246171 | 35246226 | 35246171 | ID=cds.MS.gene073651.t1;Parent=MS.gene073651.t1 |
| chr1.1 | exon | 35245836 | 35246078 | 35245836 | ID=MS.gene073651.t1.exon7;Parent=MS.gene073651.t1 |
| chr1.1 | CDS | 35245836 | 35246078 | 35245836 | ID=cds.MS.gene073651.t1;Parent=MS.gene073651.t1 |
| Gene Sequence |
| Protein sequence |
