Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073715.t1 | AES59963.1 | 86 | 580 | 60 | 2 | 1 | 580 | 1 | 559 | 3.00E-287 | 997.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073715.t1 | Q336N8 | 51.9 | 462 | 219 | 2 | 6 | 465 | 101 | 561 | 1.2e-135 | 485.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073715.t1 | G7IBC9 | 86.0 | 580 | 60 | 2 | 1 | 580 | 1 | 559 | 2.2e-287 | 997.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene073715.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073715.t1 | MTR_1g038370 | 88.296 | 581 | 45 | 4 | 1 | 580 | 1 | 559 | 0.0 | 1052 |
| MS.gene073715.t1 | MTR_1g038400 | 76.440 | 573 | 106 | 4 | 2 | 572 | 22 | 567 | 0.0 | 874 |
| MS.gene073715.t1 | MTR_5g029370 | 52.610 | 498 | 230 | 2 | 2 | 494 | 83 | 579 | 0.0 | 557 |
| MS.gene073715.t1 | MTR_5g029370 | 52.610 | 498 | 230 | 2 | 2 | 494 | 83 | 579 | 0.0 | 557 |
| MS.gene073715.t1 | MTR_7g407000 | 81.250 | 144 | 9 | 2 | 181 | 323 | 28 | 154 | 7.24e-79 | 246 |
| MS.gene073715.t1 | MTR_3g075210 | 38.056 | 360 | 187 | 8 | 8 | 346 | 18 | 362 | 2.62e-66 | 235 |
| MS.gene073715.t1 | MTR_8g089260 | 31.373 | 561 | 277 | 14 | 4 | 477 | 29 | 568 | 1.62e-57 | 208 |
| MS.gene073715.t1 | MTR_1g078070 | 29.981 | 537 | 283 | 16 | 6 | 463 | 148 | 670 | 2.59e-54 | 199 |
| MS.gene073715.t1 | MTR_1g078070 | 29.981 | 537 | 283 | 16 | 6 | 463 | 148 | 670 | 3.21e-54 | 199 |
| MS.gene073715.t1 | MTR_1g094740 | 45.745 | 188 | 98 | 1 | 152 | 339 | 291 | 474 | 4.77e-53 | 196 |
| MS.gene073715.t1 | MTR_5g010300 | 42.264 | 265 | 124 | 6 | 109 | 354 | 323 | 577 | 7.49e-53 | 195 |
| MS.gene073715.t1 | MTR_5g010300 | 42.264 | 265 | 124 | 6 | 109 | 354 | 323 | 577 | 7.49e-53 | 195 |
| MS.gene073715.t1 | MTR_5g010300 | 42.264 | 265 | 124 | 6 | 109 | 354 | 323 | 577 | 7.71e-53 | 195 |
| MS.gene073715.t1 | MTR_5g010300 | 42.264 | 265 | 124 | 6 | 109 | 354 | 323 | 577 | 8.44e-53 | 195 |
| MS.gene073715.t1 | MTR_2g047130 | 32.512 | 406 | 201 | 9 | 4 | 344 | 48 | 445 | 3.27e-51 | 190 |
| MS.gene073715.t1 | MTR_2g047130 | 32.512 | 406 | 201 | 9 | 4 | 344 | 45 | 442 | 3.92e-51 | 189 |
| MS.gene073715.t1 | MTR_7g097070 | 30.931 | 333 | 183 | 12 | 156 | 462 | 338 | 649 | 3.89e-30 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073715.t1 | AT5G46910 | 55.150 | 466 | 208 | 1 | 7 | 472 | 102 | 566 | 0.0 | 548 |
| MS.gene073715.t1 | AT5G46910 | 55.150 | 466 | 208 | 1 | 7 | 472 | 102 | 566 | 0.0 | 548 |
| MS.gene073715.t1 | AT2G34880 | 31.144 | 533 | 278 | 15 | 7 | 467 | 60 | 575 | 4.87e-59 | 211 |
| MS.gene073715.t1 | AT3G48430 | 35.230 | 369 | 197 | 7 | 8 | 339 | 20 | 383 | 1.19e-58 | 213 |
| MS.gene073715.t1 | AT1G63490 | 36.267 | 375 | 170 | 11 | 94 | 431 | 53 | 395 | 6.52e-57 | 207 |
| MS.gene073715.t1 | AT1G30810 | 29.815 | 540 | 289 | 14 | 4 | 467 | 55 | 580 | 6.61e-57 | 205 |
| MS.gene073715.t1 | AT1G30810 | 29.815 | 540 | 289 | 14 | 4 | 467 | 55 | 580 | 6.61e-57 | 205 |
| MS.gene073715.t1 | AT1G30810 | 29.815 | 540 | 289 | 14 | 4 | 467 | 55 | 580 | 6.61e-57 | 205 |
| MS.gene073715.t1 | AT1G63490 | 36.267 | 375 | 170 | 11 | 94 | 431 | 306 | 648 | 7.67e-57 | 207 |
| MS.gene073715.t1 | AT1G63490 | 36.267 | 375 | 170 | 11 | 94 | 431 | 306 | 648 | 8.82e-57 | 207 |
| MS.gene073715.t1 | AT4G20400 | 28.727 | 550 | 291 | 16 | 4 | 470 | 52 | 583 | 8.22e-56 | 203 |
| MS.gene073715.t1 | AT4G20400 | 28.996 | 538 | 281 | 16 | 16 | 470 | 7 | 526 | 8.90e-53 | 194 |
| MS.gene073715.t1 | AT5G04240 | 46.277 | 188 | 97 | 1 | 152 | 339 | 259 | 442 | 5.11e-52 | 193 |
| MS.gene073715.t1 | AT1G08620 | 40.000 | 240 | 124 | 4 | 117 | 343 | 327 | 559 | 4.13e-45 | 172 |
| MS.gene073715.t1 | AT1G08620 | 40.000 | 240 | 124 | 4 | 117 | 343 | 313 | 545 | 4.93e-45 | 172 |
| MS.gene073715.t1 | AT1G08620 | 40.000 | 240 | 124 | 4 | 117 | 343 | 313 | 545 | 4.93e-45 | 172 |
| MS.gene073715.t1 | AT1G08620 | 40.000 | 240 | 124 | 4 | 117 | 343 | 313 | 545 | 4.93e-45 | 172 |
| MS.gene073715.t1 | AT2G38950 | 25.080 | 622 | 358 | 21 | 2 | 540 | 102 | 698 | 2.88e-35 | 141 |
| MS.gene073715.t1 | AT1G63490 | 34.848 | 198 | 86 | 5 | 254 | 431 | 15 | 189 | 2.90e-24 | 108 |
Find 85 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACAATTGTACAGCCTCTT+AGG | 0.195974 | 1.1:+36661745 | MS.gene073715:CDS |
| GATGCATTCATTTATGTTAT+AGG | 0.215836 | 1.1:-36663997 | None:intergenic |
| TAGGAGAATATATTTGTTAA+AGG | 0.243804 | 1.1:-36663978 | None:intergenic |
| AATCCAGCATGATATGAATT+TGG | 0.254423 | 1.1:-36662842 | None:intergenic |
| TTCTTTACCACACAATCTAT+TGG | 0.266643 | 1.1:-36661954 | None:intergenic |
| TGTCTTAACGGAAGAGAAAA+AGG | 0.267528 | 1.1:+36661710 | MS.gene073715:CDS |
| TCCTTCAATATCTTCCCTTT+TGG | 0.303945 | 1.1:+36664436 | MS.gene073715:CDS |
| ACTGAAAACAGAATAATAAT+TGG | 0.313275 | 1.1:+36664195 | MS.gene073715:intron |
| AGTTCCTCATATGGAATTAT+AGG | 0.316333 | 1.1:-36663456 | None:intergenic |
| GAGAAAGGAACAGTTGAGTA+TGG | 0.324983 | 1.1:+36662031 | MS.gene073715:CDS |
| TTACAAAGAAGTTCCTCATA+TGG | 0.344918 | 1.1:-36663465 | None:intergenic |
| ATATAGGACTCGTTGTCTTT+TGG | 0.352203 | 1.1:-36664375 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.359872 | 1.1:-36663741 | None:intergenic |
| AGCTCTTCAAATACATCATT+AGG | 0.370354 | 1.1:+36663645 | MS.gene073715:CDS |
| AACAAGCAATTTCAATTTGA+AGG | 0.380018 | 1.1:+36662105 | MS.gene073715:CDS |
| TAAACTTTGCTATTGGTGAT+TGG | 0.380389 | 1.1:+36663382 | MS.gene073715:CDS |
| TGACATGCAGCCTTTGCAAT+AGG | 0.385933 | 1.1:+36663673 | MS.gene073715:CDS |
| CTCCATTGCGTTTAGTTGAC+AGG | 0.390855 | 1.1:+36662312 | MS.gene073715:CDS |
| GACAAAAGAAGCAGGATTAG+AGG | 0.392437 | 1.1:-36661691 | None:intergenic |
| GGAAGATATTGAAGGAACTT+TGG | 0.410410 | 1.1:-36664429 | None:intergenic |
| TGCTGCCAAAAGTCTTCAAC+AGG | 0.414775 | 1.1:+36663932 | MS.gene073715:CDS |
| CTGATCCTATGCTTTACATT+GGG | 0.424948 | 1.1:+36662436 | MS.gene073715:CDS |
| CACAATTGTACAGCCTCTTA+GGG | 0.435355 | 1.1:+36661746 | MS.gene073715:CDS |
| CTTGTTCCAAGCTTATCATC+AGG | 0.440827 | 1.1:-36662088 | None:intergenic |
| GACATGCAGCCTTTGCAATA+GGG | 0.448222 | 1.1:+36663674 | MS.gene073715:CDS |
| GAAGCTGTAAACTTTGCTAT+TGG | 0.453482 | 1.1:+36663375 | MS.gene073715:CDS |
| TTGGTGATTGGTTTCCACTC+GGG | 0.456519 | 1.1:+36663394 | MS.gene073715:CDS |
| TTTGATTCGAAAACCCTAAG+AGG | 0.457545 | 1.1:-36661759 | None:intergenic |
| GCTACCTATAATTCCATATG+AGG | 0.458631 | 1.1:+36663452 | MS.gene073715:CDS |
| TGCTCAAACTCTTGTTCTGA+TGG | 0.476367 | 1.1:-36661195 | None:intergenic |
| TAACTTGAGAAAACATGAAT+CGG | 0.480484 | 1.1:+36664397 | MS.gene073715:CDS |
| TACAAGGCGGTGCAAAAGCC+AGG | 0.481676 | 1.1:+36662800 | MS.gene073715:CDS |
| TTAAAAGAACATGGAGAGAA+TGG | 0.487266 | 1.1:+36662704 | MS.gene073715:CDS |
| ACATAATGTGCCGGTTTACA+AGG | 0.487938 | 1.1:+36662784 | MS.gene073715:CDS |
| ATACCAAATTTAGACGCCTC+GGG | 0.488483 | 1.1:-36661246 | None:intergenic |
| TTGAAGATCACTATTTGTAC+AGG | 0.488775 | 1.1:+36662487 | MS.gene073715:CDS |
| ATTTGAAGCTCTTGCAAACA+AGG | 0.496352 | 1.1:+36661925 | MS.gene073715:CDS |
| TTTCCAAATTCATATCATGC+TGG | 0.496493 | 1.1:+36662839 | MS.gene073715:CDS |
| TGCCACAAAATTGTTTATGC+GGG | 0.497644 | 1.1:+36663862 | MS.gene073715:CDS |
| ATCATCAGGATCACTTGAAA+AGG | 0.501772 | 1.1:-36662074 | None:intergenic |
| GGTGCAAATAAAACTTGGTA+TGG | 0.503293 | 1.1:+36662614 | MS.gene073715:CDS |
| ATTGGTGATTGGTTTCCACT+CGG | 0.503752 | 1.1:+36663393 | MS.gene073715:CDS |
| ACGAGGTCTTACCATGGAAA+AGG | 0.511206 | 1.1:-36663749 | None:intergenic |
| GAAATAGTACATGGAGAGAA+AGG | 0.511259 | 1.1:+36662016 | MS.gene073715:CDS |
| CAAAATCAAACTTGAAGATA+CGG | 0.514277 | 1.1:+36663530 | MS.gene073715:CDS |
| ACTGATCCTATGCTTTACAT+TGG | 0.515442 | 1.1:+36662435 | MS.gene073715:CDS |
| AGTGATCCTGATGATAAGCT+TGG | 0.516084 | 1.1:+36662082 | MS.gene073715:CDS |
| TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1.1:+36662460 | MS.gene073715:CDS |
| TGGTGATTGGTTTCCACTCG+GGG | 0.521993 | 1.1:+36663395 | MS.gene073715:CDS |
| TCCGTTAAGACAAAAGAAGC+AGG | 0.523048 | 1.1:-36661699 | None:intergenic |
| TAAGACATCGCTATCGCAGT+TGG | 0.526345 | 1.1:+36663602 | MS.gene073715:CDS |
| AATTGAGAGGATGCAGAACT+AGG | 0.531709 | 1.1:-36662641 | None:intergenic |
| TTGGTACTCATCATCACTGA+TGG | 0.536804 | 1.1:-36664356 | None:intergenic |
| ACTCAGGTGCAAATAAAACT+TGG | 0.537060 | 1.1:+36662609 | MS.gene073715:CDS |
| TTATGTTCTAACAAGACATC+AGG | 0.538881 | 1.1:-36662767 | None:intergenic |
| AGAAGAACTGTTAACTCGCT+AGG | 0.545814 | 1.1:+36664236 | MS.gene073715:CDS |
| CTTGTTAGAACATAATGTGC+CGG | 0.547471 | 1.1:+36662775 | MS.gene073715:CDS |
| AATGGAGACTGTGGCAGCCG+CGG | 0.554838 | 1.1:-36662296 | None:intergenic |
| GCAGGATTAGAGGCAGCGAT+TGG | 0.560174 | 1.1:-36661681 | None:intergenic |
| AAGGTGACGACAAACTCTCC+TGG | 0.561754 | 1.1:-36662818 | None:intergenic |
| CAAGACATCAGGAGAGAACA+TGG | 0.563327 | 1.1:-36662756 | None:intergenic |
| CATACCAAATTTAGACGCCT+CGG | 0.566207 | 1.1:-36661247 | None:intergenic |
| TGTTCTGATGGATAATACGT+TGG | 0.567602 | 1.1:-36661183 | None:intergenic |
| GCCAAAAGGGAAGATATTGA+AGG | 0.571210 | 1.1:-36664437 | None:intergenic |
| TTCCTGTCAACTAAACGCAA+TGG | 0.577093 | 1.1:-36662314 | None:intergenic |
| CATAACAATCCCTATTGCAA+AGG | 0.580709 | 1.1:-36663683 | None:intergenic |
| GTGCCACAAAATTGTTTATG+CGG | 0.580719 | 1.1:+36663861 | MS.gene073715:CDS |
| TTGCTAGCTGCGGCCCCGAG+TGG | 0.581206 | 1.1:-36663408 | None:intergenic |
| TTCTGGCACGAAATAGTACA+TGG | 0.584729 | 1.1:+36662007 | MS.gene073715:CDS |
| TATCATGCTGGATTTAGTCA+TGG | 0.587724 | 1.1:+36662851 | MS.gene073715:CDS |
| ATTTAAGAGAAATGACATGT+TGG | 0.608728 | 1.1:+36663899 | MS.gene073715:CDS |
| AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1.1:-36662441 | None:intergenic |
| TACAACTCCTCAAAAGCTAG+AGG | 0.624733 | 1.1:+36663504 | MS.gene073715:CDS |
| TGAATAACGTTTGCTAGCTG+CGG | 0.626370 | 1.1:-36663418 | None:intergenic |
| AGCATAAATTACCATCACTC+AGG | 0.628951 | 1.1:+36662593 | MS.gene073715:intron |
| ACAGAATAATAATTGGCATG+AGG | 0.629929 | 1.1:+36664202 | MS.gene073715:intron |
| TACCAAATTTAGACGCCTCG+GGG | 0.634434 | 1.1:-36661245 | None:intergenic |
| AGCATGATATGAATTTGGAA+AGG | 0.636839 | 1.1:-36662837 | None:intergenic |
| AACAAAGTCTTAAAAGAACA+TGG | 0.646276 | 1.1:+36662695 | MS.gene073715:CDS |
| TGAATGCATCAAAGAACACA+AGG | 0.658928 | 1.1:+36664010 | MS.gene073715:CDS |
| ATTTGTTAAAGGTAACGCGT+CGG | 0.660718 | 1.1:-36663967 | None:intergenic |
| ACCAAATTTAGACGCCTCGG+GGG | 0.671194 | 1.1:-36661244 | None:intergenic |
| ACTAAACGCAATGGAGACTG+TGG | 0.698121 | 1.1:-36662305 | None:intergenic |
| TAATGTGCCGGTTTACAAGG+CGG | 0.701604 | 1.1:+36662787 | MS.gene073715:CDS |
| TGAGTATGGAGTCAATGTTG+AGG | 0.703101 | 1.1:+36662045 | MS.gene073715:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTATTCAAAATTTCA+GGG | + | chr1.1:36662408-36662427 | MS.gene073715:intron | 10.0% |
| !!! | TTAATTTTATTCAAAATTTC+AGG | + | chr1.1:36662407-36662426 | MS.gene073715:intron | 10.0% |
| !! | ATATTTGATCTTAATATTTC+AGG | + | chr1.1:36661639-36661658 | MS.gene073715:intron | 15.0% |
| !!! | AACAACTTTTAATTCATATT+AGG | - | chr1.1:36662368-36662387 | None:intergenic | 15.0% |
| !!! | ATCTGATTTATTTTAACTTT+TGG | + | chr1.1:36664165-36664184 | MS.gene073715:intron | 15.0% |
| !!! | ATTGTTTTCTTTTCATTTTA+GGG | + | chr1.1:36661286-36661305 | MS.gene073715:intron | 15.0% |
| !!! | TATTGTTTTCTTTTCATTTT+AGG | + | chr1.1:36661285-36661304 | MS.gene073715:intron | 15.0% |
| !! | ACTGAAAACAGAATAATAAT+TGG | + | chr1.1:36664195-36664214 | MS.gene073715:intron | 20.0% |
| !! | AGAACGATATAATCTAATAT+AGG | + | chr1.1:36661548-36661567 | MS.gene073715:intron | 20.0% |
| !! | TGATGAAAAATTAACTAACT+TGG | + | chr1.1:36661862-36661881 | MS.gene073715:intron | 20.0% |
| !!! | AATCTGTTTATTTTTGTACA+AGG | + | chr1.1:36663131-36663150 | MS.gene073715:intron | 20.0% |
| !!! | ACATAAGTATTTAAAATAGC+AGG | - | chr1.1:36663250-36663269 | None:intergenic | 20.0% |
| !!! | ACTATTTTAATGAAGTTTAG+AGG | - | chr1.1:36664079-36664098 | None:intergenic | 20.0% |
| !!! | CTTATATTTTACGAATAAGT+AGG | + | chr1.1:36662959-36662978 | MS.gene073715:intron | 20.0% |
| !!! | TAACTTTTTCTAAGAGAAAA+AGG | + | chr1.1:36661796-36661815 | MS.gene073715:CDS | 20.0% |
| !!! | TAGGAGAATATATTTGTTAA+AGG | - | chr1.1:36663981-36664000 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCATAATAATACC+TGG | + | chr1.1:36663211-36663230 | MS.gene073715:intron | 20.0% |
| ! | AACAAAGTCTTAAAAGAACA+TGG | + | chr1.1:36662695-36662714 | MS.gene073715:CDS | 25.0% |
| ! | AACAAGCAATTTCAATTTGA+AGG | + | chr1.1:36662105-36662124 | MS.gene073715:CDS | 25.0% |
| ! | AGTAGAATTCTTACTATACT+TGG | - | chr1.1:36661362-36661381 | None:intergenic | 25.0% |
| ! | ATTTAAGAGAAATGACATGT+TGG | + | chr1.1:36663899-36663918 | MS.gene073715:CDS | 25.0% |
| ! | CAAAATCAAACTTGAAGATA+CGG | + | chr1.1:36663530-36663549 | MS.gene073715:CDS | 25.0% |
| ! | CTTTCTATTATTCAAGCTTA+GGG | - | chr1.1:36663038-36663057 | None:intergenic | 25.0% |
| ! | GATGCATTCATTTATGTTAT+AGG | - | chr1.1:36664000-36664019 | None:intergenic | 25.0% |
| ! | TAACTTGAGAAAACATGAAT+CGG | + | chr1.1:36664397-36664416 | MS.gene073715:CDS | 25.0% |
| ! | TGTCTGAATATAACCATAAT+AGG | - | chr1.1:36663839-36663858 | None:intergenic | 25.0% |
| !! | AGATTTTACTAAAATCACAG+TGG | + | chr1.1:36661509-36661528 | MS.gene073715:intron | 25.0% |
| !! | AGGTTGATTGAATAATAGAA+AGG | + | chr1.1:36662983-36663002 | MS.gene073715:intron | 25.0% |
| !! | ATCATTTTCTTGTTGAGTTT+AGG | + | chr1.1:36663339-36663358 | MS.gene073715:intron | 25.0% |
| !! | ATTTTCTGCAGATAAACTAA+AGG | - | chr1.1:36661222-36661241 | None:intergenic | 25.0% |
| !! | CATGTTTTCTCAAGTTATAT+AGG | - | chr1.1:36664394-36664413 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTGTGCAAGAAAT+TGG | - | chr1.1:36662736-36662755 | None:intergenic | 25.0% |
| AAACACATTGCTTTATCTTC+AGG | + | chr1.1:36664126-36664145 | MS.gene073715:intron | 30.0% | |
| AAAGAAAGTTGAGGGATAAA+AGG | - | chr1.1:36661396-36661415 | None:intergenic | 30.0% | |
| AATACTCAAAGAGAATAACG+AGG | - | chr1.1:36663769-36663788 | None:intergenic | 30.0% | |
| AATCCAGCATGATATGAATT+TGG | - | chr1.1:36662845-36662864 | None:intergenic | 30.0% | |
| ACAGAATAATAATTGGCATG+AGG | + | chr1.1:36664202-36664221 | MS.gene073715:intron | 30.0% | |
| AGCATGATATGAATTTGGAA+AGG | - | chr1.1:36662840-36662859 | None:intergenic | 30.0% | |
| AGCTCTTCAAATACATCATT+AGG | + | chr1.1:36663645-36663664 | MS.gene073715:CDS | 30.0% | |
| AGTTCCTCATATGGAATTAT+AGG | - | chr1.1:36663459-36663478 | None:intergenic | 30.0% | |
| ATGGATAAACTTGCCTATTA+TGG | + | chr1.1:36663823-36663842 | MS.gene073715:intron | 30.0% | |
| CCTAAGCTTGAATAATAGAA+AGG | + | chr1.1:36663036-36663055 | MS.gene073715:intron | 30.0% | |
| CCTTTCTATTATTCAAGCTT+AGG | - | chr1.1:36663039-36663058 | None:intergenic | 30.0% | |
| TACAAAAATTGCTTCCTTAC+TGG | - | chr1.1:36662344-36662363 | None:intergenic | 30.0% | |
| TTAAAAGAACATGGAGAGAA+TGG | + | chr1.1:36662704-36662723 | MS.gene073715:CDS | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | - | chr1.1:36663468-36663487 | None:intergenic | 30.0% | |
| TTATGTTCTAACAAGACATC+AGG | - | chr1.1:36662770-36662789 | None:intergenic | 30.0% | |
| TTCTTTACCACACAATCTAT+TGG | - | chr1.1:36661957-36661976 | None:intergenic | 30.0% | |
| TTGAAGATCACTATTTGTAC+AGG | + | chr1.1:36662487-36662506 | MS.gene073715:CDS | 30.0% | |
| TTTCCAAATTCATATCATGC+TGG | + | chr1.1:36662839-36662858 | MS.gene073715:CDS | 30.0% | |
| ! | TAAGTTGCTTGTGTTATTGA+TGG | + | chr1.1:36663804-36663823 | MS.gene073715:intron | 30.0% |
| ! | TATTTTACGAATAAGTAGGC+AGG | + | chr1.1:36662963-36662982 | MS.gene073715:intron | 30.0% |
| ! | TGAATAATAGAAAGGTACGT+AGG | + | chr1.1:36662991-36663010 | MS.gene073715:intron | 30.0% |
| ! | TTTATCCCTCAACTTTCTTT+TGG | + | chr1.1:36661396-36661415 | MS.gene073715:intron | 30.0% |
| ! | TTTTCCATAATAATACCTGG+CGG | + | chr1.1:36663214-36663233 | MS.gene073715:intron | 30.0% |
| ! | TTTTTCCTGTTGAAGACTTT+TGG | - | chr1.1:36663940-36663959 | None:intergenic | 30.0% |
| !! | TAAACTTTGCTATTGGTGAT+TGG | + | chr1.1:36663382-36663401 | MS.gene073715:CDS | 30.0% |
| !!! | TTGAGTTTAGGTTTTAACTG+TGG | + | chr1.1:36663351-36663370 | MS.gene073715:intron | 30.0% |
| !!! | TTTGATTTTAGAATTTGCCG+CGG | + | chr1.1:36662279-36662298 | MS.gene073715:intron | 30.0% |
| AATTCCGCCAGGTATTATTA+TGG | - | chr1.1:36663221-36663240 | None:intergenic | 35.0% | |
| ACTCAGGTGCAAATAAAACT+TGG | + | chr1.1:36662609-36662628 | MS.gene073715:CDS | 35.0% | |
| ACTGATCCTATGCTTTACAT+TGG | + | chr1.1:36662435-36662454 | MS.gene073715:CDS | 35.0% | |
| AGCATAAATTACCATCACTC+AGG | + | chr1.1:36662593-36662612 | MS.gene073715:intron | 35.0% | |
| ATCATCAGGATCACTTGAAA+AGG | - | chr1.1:36662077-36662096 | None:intergenic | 35.0% | |
| ATGGATCCAAAAGAAAGTTG+AGG | - | chr1.1:36661405-36661424 | None:intergenic | 35.0% | |
| CATAACAATCCCTATTGCAA+AGG | - | chr1.1:36663686-36663705 | None:intergenic | 35.0% | |
| CGAGATTTGATTATGGAGTT+CGG | - | chr1.1:36663099-36663118 | None:intergenic | 35.0% | |
| CTGATCCTATGCTTTACATT+GGG | + | chr1.1:36662436-36662455 | MS.gene073715:CDS | 35.0% | |
| CTTGTTAGAACATAATGTGC+CGG | + | chr1.1:36662775-36662794 | MS.gene073715:CDS | 35.0% | |
| GAAATAGTACATGGAGAGAA+AGG | + | chr1.1:36662016-36662035 | MS.gene073715:CDS | 35.0% | |
| GCTACCTATAATTCCATATG+AGG | + | chr1.1:36663452-36663471 | MS.gene073715:CDS | 35.0% | |
| GGAAGATATTGAAGGAACTT+TGG | - | chr1.1:36664432-36664451 | None:intergenic | 35.0% | |
| GGTGCAAATAAAACTTGGTA+TGG | + | chr1.1:36662614-36662633 | MS.gene073715:CDS | 35.0% | |
| GTGCCACAAAATTGTTTATG+CGG | + | chr1.1:36663861-36663880 | MS.gene073715:CDS | 35.0% | |
| TATCATGCTGGATTTAGTCA+TGG | + | chr1.1:36662851-36662870 | MS.gene073715:CDS | 35.0% | |
| TGAATGCATCAAAGAACACA+AGG | + | chr1.1:36664010-36664029 | MS.gene073715:CDS | 35.0% | |
| TGCCACAAAATTGTTTATGC+GGG | + | chr1.1:36663862-36663881 | MS.gene073715:CDS | 35.0% | |
| TGCTATTCAGTATGTTTGCA+TGG | + | chr1.1:36662460-36662479 | MS.gene073715:CDS | 35.0% | |
| TGGATCCAAAAGAAAGTTGA+GGG | - | chr1.1:36661404-36661423 | None:intergenic | 35.0% | |
| TGTCTTAACGGAAGAGAAAA+AGG | + | chr1.1:36661710-36661729 | MS.gene073715:CDS | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | - | chr1.1:36663744-36663763 | None:intergenic | 35.0% | |
| TTGACAGGAAAATTCCAGTA+AGG | + | chr1.1:36662327-36662346 | MS.gene073715:intron | 35.0% | |
| ! | AGAAAGGTACGTAGGTTTAA+AGG | + | chr1.1:36662999-36663018 | MS.gene073715:intron | 35.0% |
| ! | ATATAGGACTCGTTGTCTTT+TGG | - | chr1.1:36664378-36664397 | None:intergenic | 35.0% |
| ! | ATTTGAAGCTCTTGCAAACA+AGG | + | chr1.1:36661925-36661944 | MS.gene073715:CDS | 35.0% |
| ! | ATTTGTTAAAGGTAACGCGT+CGG | - | chr1.1:36663970-36663989 | None:intergenic | 35.0% |
| ! | GAAGCTGTAAACTTTGCTAT+TGG | + | chr1.1:36663375-36663394 | MS.gene073715:CDS | 35.0% |
| ! | GACAGTCTTTTCAAATTGAG+AGG | - | chr1.1:36662657-36662676 | None:intergenic | 35.0% |
| ! | GCAACAGATTCTGCATTTTT+AGG | + | chr1.1:36661583-36661602 | MS.gene073715:intron | 35.0% |
| ! | GGTTTTCGAATCAAATGAGA+TGG | + | chr1.1:36661767-36661786 | MS.gene073715:CDS | 35.0% |
| ! | TCCTGCTTCTTTTGTCTTAA+CGG | + | chr1.1:36661698-36661717 | MS.gene073715:CDS | 35.0% |
| ! | TCCTTCAATATCTTCCCTTT+TGG | + | chr1.1:36664436-36664455 | MS.gene073715:CDS | 35.0% |
| ! | TGTTCTGATGGATAATACGT+TGG | - | chr1.1:36661186-36661205 | None:intergenic | 35.0% |
| ! | TTTGATTCGAAAACCCTAAG+AGG | - | chr1.1:36661762-36661781 | None:intergenic | 35.0% |
| !! | TGGTGTTATTACGTTTCTGA+TGG | + | chr1.1:36662930-36662949 | MS.gene073715:intron | 35.0% |
| !! | TTTTATTTGCACCTGAGTGA+TGG | - | chr1.1:36662607-36662626 | None:intergenic | 35.0% |
| AAACTCGAGTACTTCAGAGA+TGG | - | chr1.1:36661424-36661443 | None:intergenic | 40.0% | |
| AATTGAGAGGATGCAGAACT+AGG | - | chr1.1:36662644-36662663 | None:intergenic | 40.0% | |
| ACACAATTGTACAGCCTCTT+AGG | + | chr1.1:36661745-36661764 | MS.gene073715:CDS | 40.0% | |
| AGAAGAACTGTTAACTCGCT+AGG | + | chr1.1:36664236-36664255 | MS.gene073715:CDS | 40.0% | |
| AGAATAACGAGGTCTTACCA+TGG | - | chr1.1:36663758-36663777 | None:intergenic | 40.0% | |
| AGCATCCCAATGTAAAGCAT+AGG | - | chr1.1:36662444-36662463 | None:intergenic | 40.0% | |
| AGTGATCCTGATGATAAGCT+TGG | + | chr1.1:36662082-36662101 | MS.gene073715:CDS | 40.0% | |
| ATACCAAATTTAGACGCCTC+GGG | - | chr1.1:36661249-36661268 | None:intergenic | 40.0% | |
| CACAATTGTACAGCCTCTTA+GGG | + | chr1.1:36661746-36661765 | MS.gene073715:CDS | 40.0% | |
| CATACCAAATTTAGACGCCT+CGG | - | chr1.1:36661250-36661269 | None:intergenic | 40.0% | |
| CTTGTTCCAAGCTTATCATC+AGG | - | chr1.1:36662091-36662110 | None:intergenic | 40.0% | |
| GAACACGCGAGATTTGATTA+TGG | - | chr1.1:36663106-36663125 | None:intergenic | 40.0% | |
| GACAAAAGAAGCAGGATTAG+AGG | - | chr1.1:36661694-36661713 | None:intergenic | 40.0% | |
| GAGAAAGGAACAGTTGAGTA+TGG | + | chr1.1:36662031-36662050 | MS.gene073715:CDS | 40.0% | |
| GCCAAAAGGGAAGATATTGA+AGG | - | chr1.1:36664440-36664459 | None:intergenic | 40.0% | |
| TACAACTCCTCAAAAGCTAG+AGG | + | chr1.1:36663504-36663523 | MS.gene073715:CDS | 40.0% | |
| TCCGTTAAGACAAAAGAAGC+AGG | - | chr1.1:36661702-36661721 | None:intergenic | 40.0% | |
| TGAGTATGGAGTCAATGTTG+AGG | + | chr1.1:36662045-36662064 | MS.gene073715:CDS | 40.0% | |
| TGCTCAAACTCTTGTTCTGA+TGG | - | chr1.1:36661198-36661217 | None:intergenic | 40.0% | |
| TTCCTGTCAACTAAACGCAA+TGG | - | chr1.1:36662317-36662336 | None:intergenic | 40.0% | |
| TTCTGGCACGAAATAGTACA+TGG | + | chr1.1:36662007-36662026 | MS.gene073715:CDS | 40.0% | |
| TTGGTACTCATCATCACTGA+TGG | - | chr1.1:36664359-36664378 | None:intergenic | 40.0% | |
| ! | ATTTTTCCGATGTCGCCAAA+AGG | - | chr1.1:36664454-36664473 | None:intergenic | 40.0% |
| ! | CTCCCGCATAAACAATTTTG+TGG | - | chr1.1:36663867-36663886 | None:intergenic | 40.0% |
| ! | GATCCAATTTGCCTTTTCCA+TGG | + | chr1.1:36663738-36663757 | MS.gene073715:CDS | 40.0% |
| ! | GCGTTTTCCAATAGATTGTG+TGG | + | chr1.1:36661947-36661966 | MS.gene073715:CDS | 40.0% |
| ! | TGAATAACGTTTGCTAGCTG+CGG | - | chr1.1:36663421-36663440 | None:intergenic | 40.0% |
| ! | TTTTTCCGATGTCGCCAAAA+GGG | - | chr1.1:36664453-36664472 | None:intergenic | 40.0% |
| !! | ACATAATGTGCCGGTTTACA+AGG | + | chr1.1:36662784-36662803 | MS.gene073715:CDS | 40.0% |
| !! | ATTGGTGATTGGTTTCCACT+CGG | + | chr1.1:36663393-36663412 | MS.gene073715:CDS | 40.0% |
| !! | CAGATATCGAAAAAGCGTTC+TGG | + | chr1.1:36661990-36662009 | MS.gene073715:CDS | 40.0% |
| !!! | TTTGTCACCTCTAGCTTTTG+AGG | - | chr1.1:36663514-36663533 | None:intergenic | 40.0% |
| ACGAGGTCTTACCATGGAAA+AGG | - | chr1.1:36663752-36663771 | None:intergenic | 45.0% | |
| ACTAAACGCAATGGAGACTG+TGG | - | chr1.1:36662308-36662327 | None:intergenic | 45.0% | |
| CAAGACATCAGGAGAGAACA+TGG | - | chr1.1:36662759-36662778 | None:intergenic | 45.0% | |
| CTCCATTGCGTTTAGTTGAC+AGG | + | chr1.1:36662312-36662331 | MS.gene073715:CDS | 45.0% | |
| CTCTCTCTCTCTACATGTGT+TGG | + | chr1.1:36662910-36662929 | MS.gene073715:intron | 45.0% | |
| GACATGCAGCCTTTGCAATA+GGG | + | chr1.1:36663674-36663693 | MS.gene073715:CDS | 45.0% | |
| TAAGACATCGCTATCGCAGT+TGG | + | chr1.1:36663602-36663621 | MS.gene073715:CDS | 45.0% | |
| TACCAAATTTAGACGCCTCG+GGG | - | chr1.1:36661248-36661267 | None:intergenic | 45.0% | |
| TGACATGCAGCCTTTGCAAT+AGG | + | chr1.1:36663673-36663692 | MS.gene073715:CDS | 45.0% | |
| TGCTGCCAAAAGTCTTCAAC+AGG | + | chr1.1:36663932-36663951 | MS.gene073715:CDS | 45.0% | |
| ! | ATCTTCCCTTTTGGCGACAT+CGG | + | chr1.1:36664445-36664464 | MS.gene073715:CDS | 45.0% |
| ! | TTTTGCACCGCCTTGTAAAC+CGG | - | chr1.1:36662797-36662816 | None:intergenic | 45.0% |
| !! | TAATGTGCCGGTTTACAAGG+CGG | + | chr1.1:36662787-36662806 | MS.gene073715:CDS | 45.0% |
| !! | TTGGTGATTGGTTTCCACTC+GGG | + | chr1.1:36663394-36663413 | MS.gene073715:CDS | 45.0% |
| AAGGTGACGACAAACTCTCC+TGG | - | chr1.1:36662821-36662840 | None:intergenic | 50.0% | |
| ACCAAATTTAGACGCCTCGG+GGG | - | chr1.1:36661247-36661266 | None:intergenic | 50.0% | |
| TGCAGCAGCAGAGGAACAAT+AGG | + | chr1.1:36663073-36663092 | MS.gene073715:intron | 50.0% | |
| !! | TGGTGATTGGTTTCCACTCG+GGG | + | chr1.1:36663395-36663414 | MS.gene073715:CDS | 50.0% |
| GCAGGAAGTGAAATTCCGCC+AGG | - | chr1.1:36663232-36663251 | None:intergenic | 55.0% | |
| GCAGGATTAGAGGCAGCGAT+TGG | - | chr1.1:36661684-36661703 | None:intergenic | 55.0% | |
| GTTCCTCTGCTGCTGCATAG+TGG | - | chr1.1:36663070-36663089 | None:intergenic | 55.0% | |
| TACAAGGCGGTGCAAAAGCC+AGG | + | chr1.1:36662800-36662819 | MS.gene073715:CDS | 55.0% | |
| TCTGCAGAAAATTGCCCCCG+AGG | + | chr1.1:36661230-36661249 | MS.gene073715:CDS | 55.0% | |
| AATGGAGACTGTGGCAGCCG+CGG | - | chr1.1:36662299-36662318 | None:intergenic | 60.0% | |
| CCTCTGCTGCTGCATAGTGG+CGG | - | chr1.1:36663067-36663086 | None:intergenic | 60.0% | |
| ! | GCCCCCGAGGCGTCTAAATT+TGG | + | chr1.1:36661243-36661262 | MS.gene073715:CDS | 60.0% |
| CCGCCACTATGCAGCAGCAG+AGG | + | chr1.1:36663064-36663083 | MS.gene073715:intron | 65.0% | |
| TTGCTAGCTGCGGCCCCGAG+TGG | - | chr1.1:36663411-36663430 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 36661159 | 36664481 | 36661159 | ID=MS.gene073715 |
| chr1.1 | mRNA | 36661159 | 36664481 | 36661159 | ID=MS.gene073715.t1;Parent=MS.gene073715 |
| chr1.1 | exon | 36661159 | 36661264 | 36661159 | ID=MS.gene073715.t1.exon1;Parent=MS.gene073715.t1 |
| chr1.1 | CDS | 36661159 | 36661264 | 36661159 | ID=cds.MS.gene073715.t1;Parent=MS.gene073715.t1 |
| chr1.1 | exon | 36661661 | 36661817 | 36661661 | ID=MS.gene073715.t1.exon2;Parent=MS.gene073715.t1 |
| chr1.1 | CDS | 36661661 | 36661817 | 36661661 | ID=cds.MS.gene073715.t1;Parent=MS.gene073715.t1 |
| chr1.1 | exon | 36661907 | 36662126 | 36661907 | ID=MS.gene073715.t1.exon3;Parent=MS.gene073715.t1 |
| chr1.1 | CDS | 36661907 | 36662126 | 36661907 | ID=cds.MS.gene073715.t1;Parent=MS.gene073715.t1 |
| chr1.1 | exon | 36662290 | 36662343 | 36662290 | ID=MS.gene073715.t1.exon4;Parent=MS.gene073715.t1 |
| chr1.1 | CDS | 36662290 | 36662343 | 36662290 | ID=cds.MS.gene073715.t1;Parent=MS.gene073715.t1 |
| chr1.1 | exon | 36662429 | 36662508 | 36662429 | ID=MS.gene073715.t1.exon5;Parent=MS.gene073715.t1 |
| chr1.1 | CDS | 36662429 | 36662508 | 36662429 | ID=cds.MS.gene073715.t1;Parent=MS.gene073715.t1 |
| chr1.1 | exon | 36662595 | 36662872 | 36662595 | ID=MS.gene073715.t1.exon6;Parent=MS.gene073715.t1 |
| chr1.1 | CDS | 36662595 | 36662872 | 36662595 | ID=cds.MS.gene073715.t1;Parent=MS.gene073715.t1 |
| chr1.1 | exon | 36663361 | 36663759 | 36663361 | ID=MS.gene073715.t1.exon7;Parent=MS.gene073715.t1 |
| chr1.1 | CDS | 36663361 | 36663759 | 36663361 | ID=cds.MS.gene073715.t1;Parent=MS.gene073715.t1 |
| chr1.1 | exon | 36663856 | 36664031 | 36663856 | ID=MS.gene073715.t1.exon8;Parent=MS.gene073715.t1 |
| chr1.1 | CDS | 36663856 | 36664031 | 36663856 | ID=cds.MS.gene073715.t1;Parent=MS.gene073715.t1 |
| chr1.1 | exon | 36664206 | 36664481 | 36664206 | ID=MS.gene073715.t1.exon9;Parent=MS.gene073715.t1 |
| chr1.1 | CDS | 36664206 | 36664481 | 36664206 | ID=cds.MS.gene073715.t1;Parent=MS.gene073715.t1 |
| Gene Sequence |
| Protein sequence |
