AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073763

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073763.t1 MTR_4g059870 47.389 517 201 18 3 490 1 475 2.45e-129 385
MS.gene073763.t1 MTR_2g099990 47.894 451 153 13 38 471 46 431 5.74e-115 347
MS.gene073763.t1 MTR_8g017210 88.623 167 18 1 38 204 62 227 9.19e-112 341
MS.gene073763.t1 MTR_2g090745 46.467 467 170 18 46 489 15 424 1.99e-111 337
MS.gene073763.t1 MTR_2g093960 67.686 229 62 5 38 266 32 248 5.55e-110 333
MS.gene073763.t1 MTR_1g094115 87.952 166 18 2 36 200 44 208 2.67e-109 335
MS.gene073763.t1 MTR_1g016010 44.749 438 179 10 38 471 41 419 7.42e-109 331
MS.gene073763.t1 MTR_1g112270 83.333 168 27 1 41 208 47 213 3.00e-106 328
MS.gene073763.t1 MTR_1g112270 78.212 179 27 2 41 208 47 224 1.79e-102 319
MS.gene073763.t1 MTR_2g099990 45.667 427 150 13 62 471 1 362 4.69e-98 301
MS.gene073763.t1 MTR_1g094115 77.108 166 19 3 36 200 44 191 3.25e-91 288
MS.gene073763.t1 MTR_2g017720 76.724 116 21 2 48 163 323 432 1.09e-55 192
MS.gene073763.t1 MTR_3g102000 64.423 104 29 3 65 164 36 135 5.31e-38 139
MS.gene073763.t1 MTR_5g030560 84.444 45 7 0 48 92 16 60 6.89e-22 90.1
MS.gene073763.t1 MTR_1g093095 34.028 144 83 4 59 191 107 249 4.28e-20 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073763.t1 AT5G03150 47.905 549 179 15 1 491 1 500 3.82e-139 410
MS.gene073763.t1 AT3G50700 86.364 176 21 2 26 201 24 196 6.00e-114 344
MS.gene073763.t1 AT3G45260 52.332 386 117 10 38 396 39 384 2.26e-113 342
MS.gene073763.t1 AT3G45260 52.332 386 117 10 38 396 39 384 2.26e-113 342
MS.gene073763.t1 AT5G66730 84.699 183 21 2 19 201 19 194 7.00e-113 343
MS.gene073763.t1 AT5G44160 50.798 376 147 8 34 401 33 378 7.36e-112 339
MS.gene073763.t1 AT5G60470 73.077 208 49 2 3 205 2 207 1.13e-111 338
MS.gene073763.t1 AT5G60470 73.077 208 49 2 3 205 6 211 1.21e-111 338
MS.gene073763.t1 AT1G03840 51.667 360 145 8 34 371 37 389 2.73e-111 339
MS.gene073763.t1 AT2G02080 51.240 363 147 10 29 375 46 394 4.13e-111 339
MS.gene073763.t1 AT2G02080 51.240 363 147 10 29 375 46 394 4.13e-111 339
MS.gene073763.t1 AT2G02080 51.240 363 147 10 29 375 46 394 4.13e-111 339
MS.gene073763.t1 AT2G02080 51.240 363 147 10 29 375 46 394 4.13e-111 339
MS.gene073763.t1 AT4G02670 83.908 174 28 0 37 210 52 225 4.61e-111 335
MS.gene073763.t1 AT4G02670 83.908 174 28 0 37 210 54 227 5.91e-111 335
MS.gene073763.t1 AT3G13810 85.119 168 25 0 38 205 51 218 3.15e-109 333
MS.gene073763.t1 AT3G13810 85.119 168 25 0 38 205 70 237 4.71e-109 333
MS.gene073763.t1 AT3G13810 85.119 168 25 0 38 205 70 237 4.71e-109 333
MS.gene073763.t1 AT3G13810 85.119 168 25 0 38 205 65 232 4.99e-109 333
MS.gene073763.t1 AT1G03840 51.111 360 145 9 34 371 37 387 2.03e-107 329
MS.gene073763.t1 AT1G14580 78.736 174 36 1 37 210 52 224 2.30e-106 325
MS.gene073763.t1 AT1G14580 78.736 174 36 1 37 210 52 224 2.30e-106 325
MS.gene073763.t1 AT1G14580 78.736 174 36 1 37 210 66 238 3.11e-106 325
MS.gene073763.t1 AT2G02070 83.626 171 26 2 38 207 52 221 9.61e-105 325
MS.gene073763.t1 AT2G02070 83.626 171 26 2 38 207 52 221 9.61e-105 325
MS.gene073763.t1 AT5G44160 50.000 362 143 8 48 401 8 339 9.07e-104 317
MS.gene073763.t1 AT3G13810 85.987 157 22 0 49 205 68 224 3.28e-102 316
MS.gene073763.t1 AT3G13810 85.987 157 22 0 49 205 82 238 4.42e-102 316
MS.gene073763.t1 AT5G60470 82.166 157 28 0 49 205 46 202 4.66e-99 306
MS.gene073763.t1 AT2G02080 49.394 330 138 9 62 375 1 317 5.51e-94 292
MS.gene073763.t1 AT2G02080 49.394 330 138 9 62 375 1 317 5.51e-94 292
MS.gene073763.t1 AT2G01940 65.217 161 55 1 35 194 41 201 4.02e-76 246
MS.gene073763.t1 AT1G25250 63.580 162 57 2 33 192 28 189 2.60e-75 242
MS.gene073763.t1 AT1G68130 63.462 156 56 1 38 192 41 196 3.13e-74 241
MS.gene073763.t1 AT2G01940 64.198 162 56 2 35 194 41 202 1.39e-72 237
MS.gene073763.t1 AT1G25250 65.306 147 49 2 48 192 20 166 9.71e-71 229
MS.gene073763.t1 AT2G01940 63.393 112 40 1 84 194 1 112 7.73e-47 166
MS.gene073763.t1 AT1G25250 63.063 111 39 2 84 192 1 111 4.86e-46 163
MS.gene073763.t1 AT1G68130 61.818 110 41 1 84 192 1 110 6.52e-46 163
MS.gene073763.t1 AT5G22890 32.673 202 118 7 5 188 150 351 1.74e-24 105
MS.gene073763.t1 AT1G34370 34.810 158 90 4 47 191 14 171 1.29e-23 101
MS.gene073763.t1 AT1G34370 34.810 158 90 4 47 191 224 381 3.03e-23 103
MS.gene073763.t1 AT1G34370 34.810 158 90 4 47 191 224 381 3.03e-23 103
MS.gene073763.t1 AT1G13290 35.849 159 89 7 59 205 93 250 2.22e-21 95.1
MS.gene073763.t1 AT3G20880 34.247 146 87 4 54 191 243 387 3.88e-19 90.1
MS.gene073763.t1 AT1G34790 32.948 173 100 5 51 208 129 300 6.54e-19 87.8
MS.gene073763.t1 AT3G57670 31.548 168 98 5 54 205 204 370 2.10e-18 87.4
MS.gene073763.t1 AT1G51220 32.877 146 89 4 54 191 165 309 2.25e-18 86.7
MS.gene073763.t1 AT1G08290 37.037 135 75 4 66 191 179 312 4.25e-18 85.9

Find 93 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTTCTGGTTCTGGTTC+TGG 0.197737 1.1:-48998622 MS.gene073763:CDS
AAACAACAATTCTATGATTA+TGG 0.208656 1.1:-48999172 MS.gene073763:CDS
TGGAAGATTTCTCTTCTTCT+TGG 0.211257 1.1:+49000183 None:intergenic
CACCATGGTGGTTCTGGTTC+TGG 0.254794 1.1:-48998628 MS.gene073763:CDS
GGAATTCCACATCCACAATT+TGG 0.260215 1.1:-48999234 MS.gene073763:CDS
CAGAAGGAGCATTAGGTTTA+GGG 0.264157 1.1:+49000209 None:intergenic
AGTGAAGTGGATAGTGAAAA+AGG 0.270126 1.1:+49000271 None:intergenic
CAAGTAGATTTCAATGGAAT+TGG 0.274341 1.1:-48999195 MS.gene073763:CDS
GGAAGATTTCTCTTCTTCTT+GGG 0.283013 1.1:+49000184 None:intergenic
ACAGAAGGAGCATTAGGTTT+AGG 0.289450 1.1:+49000208 None:intergenic
GGAGCATTAGGTTTAGGGTT+AGG 0.301624 1.1:+49000214 None:intergenic
TTTGTTGCCATGAGTGTCTT+TGG 0.309658 1.1:+49000022 None:intergenic
ATTATGCACCATGGTGGTTC+TGG 0.314183 1.1:-48998634 MS.gene073763:CDS
ATAAACCAGAAGAACCAAAA+AGG 0.329036 1.1:+48999079 None:intergenic
TGGTTCTGGTTCAAACTCTA+TGG 0.329623 1.1:-48998608 MS.gene073763:CDS
CTTCTTAATAACATCTTTGT+TGG 0.331545 1.1:+48999898 None:intergenic
GACCTCTTCTATGTAGTTGA+AGG 0.344711 1.1:+48999951 None:intergenic
GAGCATTAGGTTTAGGGTTA+GGG 0.346709 1.1:+49000215 None:intergenic
CATGGAATACTTCAAAATAT+TGG 0.352848 1.1:-48999258 MS.gene073763:CDS
TTAACAAAGCCTGCTTCTTC+CGG 0.353821 1.1:-48998934 MS.gene073763:CDS
TCCAATATGCAAATGATTCC+TGG 0.354400 1.1:-49000298 None:intergenic
TTGGGGACAGAAGGAGCATT+AGG 0.361121 1.1:+49000202 None:intergenic
GTCCCATTTCATGATTCCCT+TGG 0.362528 1.1:+48999115 None:intergenic
TTTCCTTGTTGATCACTTTG+TGG 0.363250 1.1:+48998664 None:intergenic
TCTTCTTCATCATCAATGTT+TGG 0.374372 1.1:-48998997 MS.gene073763:CDS
ATGAATATACCTGGTGTTCC+TGG 0.396720 1.1:+49000163 None:intergenic
AAACCAAGGGAATCATGAAA+TGG 0.400103 1.1:-48999118 MS.gene073763:CDS
TTTATCTGAGATAGTTCAAA+TGG 0.400334 1.1:-48999061 MS.gene073763:CDS
CACTATCCACTTCACTTGGT+GGG 0.416726 1.1:-49000264 MS.gene073763:CDS
TATGAGCTTTCCAATCAGAT+TGG 0.425071 1.1:+48999729 None:intergenic
CTCTTCTTCTTGGGGACAGA+AGG 0.425270 1.1:+49000193 None:intergenic
TTCTACTAGTTCAGCTATGT+TGG 0.428171 1.1:-48998758 MS.gene073763:CDS
TCTACTAGTTCAGCTATGTT+GGG 0.430741 1.1:-48998757 MS.gene073763:CDS
TGGTGGACACAAGTCTTCTC+TGG 0.431235 1.1:+48999860 None:intergenic
AGAGCAATAACCTCGGCATC+TGG 0.433782 1.1:+49000049 None:intergenic
TCACTATCCACTTCACTTGG+TGG 0.459561 1.1:-49000265 MS.gene073763:CDS
GATCTCTGTCTTAGCTTCCA+TGG 0.464655 1.1:+48999920 None:intergenic
CTGATTACCTGTGAATTGAA+TGG 0.467069 1.1:+48998477 None:intergenic
AATATGCAGTCCAATCTGAT+TGG 0.470247 1.1:-48999739 MS.gene073763:CDS
AAAGGCCAAGTTTATCACTT+TGG 0.471302 1.1:-48999143 MS.gene073763:CDS
AAGAAGAAGAGAAATCTTCC+AGG 0.472027 1.1:-49000181 MS.gene073763:CDS
GAAGATTTCTCTTCTTCTTG+GGG 0.478434 1.1:+49000185 None:intergenic
TTTCTTGGTGTGAGTGGTGG+AGG 0.481376 1.1:-48998553 MS.gene073763:CDS
GCTTCTTCCATTCAATTCAC+AGG 0.484056 1.1:-48998484 MS.gene073763:CDS
TATCATCAAGTAGATTTCAA+TGG 0.492025 1.1:-48999201 MS.gene073763:CDS
TCTGTCTTAGCTTCCATGGA+AGG 0.492579 1.1:+48999924 None:intergenic
GTGAGTGGTGGAGGAAGAAC+TGG 0.493538 1.1:-48998544 MS.gene073763:CDS
AACCAAGGGAATCATGAAAT+GGG 0.497808 1.1:-48999117 MS.gene073763:CDS
TCTGTGAAATATGCAACAAA+GGG 0.500256 1.1:-48999991 MS.gene073763:CDS
CATCCACAATTTGGTTCACA+TGG 0.504169 1.1:-48999225 MS.gene073763:CDS
AATATTATACCTTGAGAAGA+GGG 0.509866 1.1:+48999664 None:intergenic
ATCTGTGAAATATGCAACAA+AGG 0.510966 1.1:-48999992 MS.gene073763:CDS
AGCAGAAACAGTAACAGAAC+CGG 0.511338 1.1:+48998915 None:intergenic
GAAGAGGTCACAACCTTCCA+TGG 0.514490 1.1:-48999937 MS.gene073763:CDS
TTTAACCAAAGTGATAAACT+TGG 0.528252 1.1:+48999138 None:intergenic
AGATCACCAAGTGCTCTTGA+AGG 0.529586 1.1:+48999833 None:intergenic
CCACATTCACATTCACAACA+TGG 0.532028 1.1:-48999288 MS.gene073763:CDS
GCAGATGTTGAATTTGAAGC+AGG 0.534808 1.1:+48998970 None:intergenic
GGAATACTTCAAAATATTGG+TGG 0.535088 1.1:-48999255 MS.gene073763:CDS
CATGACCCTTCAAGAGCACT+TGG 0.544018 1.1:-48999839 MS.gene073763:CDS
ATGTTGGGAAATAGTAGTGC+AGG 0.545999 1.1:-48998742 MS.gene073763:CDS
TGTGAACCAAATTGTGGATG+TGG 0.555768 1.1:+48999228 None:intergenic
ACTAAACCCACCAAGTGAAG+TGG 0.557454 1.1:+49000258 None:intergenic
TATCACTTTGGTTAAACCAA+GGG 0.558927 1.1:-48999131 MS.gene073763:CDS
AGAAATCTTCCAGGAACACC+AGG 0.564051 1.1:-49000172 MS.gene073763:intron
CAAGTGCTCTTGAAGGGTCA+TGG 0.570425 1.1:+48999840 None:intergenic
GAAAGCACGGTGAAAAGAAG+TGG 0.572977 1.1:-48999784 MS.gene073763:CDS
GTAACAGAACCGGAAGAAGC+AGG 0.576220 1.1:+48998925 None:intergenic
AAATATTATACCTTGAGAAG+AGG 0.578176 1.1:+48999663 None:intergenic
AACCTTCAACTACATAGAAG+AGG 0.579451 1.1:-48999953 MS.gene073763:CDS
GCTGAACTAGTAGAAGAAGA+AGG 0.581667 1.1:+48998766 None:intergenic
TTATCTGAGATAGTTCAAAT+GGG 0.582881 1.1:-48999060 MS.gene073763:CDS
ACTGTGGCACCCTCTTCTCA+AGG 0.585281 1.1:-48999673 MS.gene073763:intron
GATCACCAAGTGCTCTTGAA+GGG 0.591900 1.1:+48999834 None:intergenic
AGAGCACTTGGTGATCTCAC+AGG 0.592028 1.1:-48999827 MS.gene073763:CDS
CCATGTTGTGAATGTGAATG+TGG 0.593588 1.1:+48999288 None:intergenic
TCACAACATGGTTTATCACA+TGG 0.594739 1.1:-48999276 MS.gene073763:CDS
CTATGATTATGGAGCAACAA+AGG 0.601378 1.1:-48999161 MS.gene073763:CDS
TTATCACTTTGGTTAAACCA+AGG 0.601736 1.1:-48999132 MS.gene073763:CDS
TCTTGAGGTAGAAACTGATG+TGG 0.615192 1.1:+48998520 None:intergenic
TGATGAAGAAGAACAAAGCA+AGG 0.620223 1.1:+48999008 None:intergenic
TATCCATGTGAACCAAATTG+TGG 0.627461 1.1:+48999222 None:intergenic
AAGCACTTTAGTAGAAAGCA+CGG 0.627488 1.1:-48999797 MS.gene073763:CDS
TTGAATATTATGCACCATGG+TGG 0.642049 1.1:-48998640 MS.gene073763:CDS
TCTATCACCAAAGACACTCA+TGG 0.646655 1.1:-49000029 MS.gene073763:CDS
AGAAGAGCAGTAGCTGACAT+TGG 0.651547 1.1:+48998889 None:intergenic
CTATACAGATCCAGATGCCG+AGG 0.652908 1.1:-49000059 MS.gene073763:intron
GTGCTCTTGAAGGGTCATGG+TGG 0.656702 1.1:+48999843 None:intergenic
AGAGAATACAAATGTGACTG+TGG 0.678918 1.1:-48999689 MS.gene073763:CDS
AACCAGAACCAGAACCACCA+TGG 0.691492 1.1:+48998626 None:intergenic
AAATTGAATATTATGCACCA+TGG 0.694171 1.1:-48998643 MS.gene073763:CDS
TGGTGATAGAGCAATAACCT+CGG 0.716517 1.1:+49000042 None:intergenic
GGACCACAAAGTGATCAACA+AGG 0.742344 1.1:-48998667 MS.gene073763:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTCATATATTTCAAAT+TGG - chr1.1:48998666-48998685 MS.gene073763:CDS 15.0%
!! AAACAACAATTCTATGATTA+TGG - chr1.1:48999594-48999613 MS.gene073763:intron 20.0%
!! CATATATTTCAAATTGGTAA+TGG - chr1.1:48998672-48998691 MS.gene073763:CDS 20.0%
!! GAATTTAATGCTTTCTTTAA+TGG - chr1.1:48999256-48999275 MS.gene073763:CDS 20.0%
!!! CTAAATTTTAAGAATGAAGA+AGG - chr1.1:48999439-48999458 MS.gene073763:intron 20.0%
!!! TTTGATCAATTTTTTATGCA+TGG - chr1.1:49000078-49000097 MS.gene073763:intron 20.0%
! AAACTAGAACTAAAAATGGA+AGG + chr1.1:48999964-48999983 None:intergenic 25.0%
! AAATATTATACCTTGAGAAG+AGG + chr1.1:48999106-48999125 None:intergenic 25.0%
! AAATTGAATATTATGCACCA+TGG - chr1.1:49000123-49000142 MS.gene073763:intron 25.0%
! AACTAGAACTAAAAATGGAA+GGG + chr1.1:48999963-48999982 None:intergenic 25.0%
! AATATTATACCTTGAGAAGA+GGG + chr1.1:48999105-48999124 None:intergenic 25.0%
! ACAAAAGATTGGTGAATAAA+AGG + chr1.1:48999139-48999158 None:intergenic 25.0%
! ACCAAAACTAGAACTAAAAA+TGG + chr1.1:48999968-48999987 None:intergenic 25.0%
! CATGGAATACTTCAAAATAT+TGG - chr1.1:48999508-48999527 MS.gene073763:intron 25.0%
! CTTCTTAATAACATCTTTGT+TGG + chr1.1:48998871-48998890 None:intergenic 25.0%
! TAATCATGAATGAATATACC+TGG + chr1.1:48998615-48998634 None:intergenic 25.0%
! TATCATCAAGTAGATTTCAA+TGG - chr1.1:48999565-48999584 MS.gene073763:intron 25.0%
! TTATCACAGAAACAAAAGAT+TGG + chr1.1:48999150-48999169 None:intergenic 25.0%
! TTTAACCAAAGTGATAAACT+TGG + chr1.1:48999631-48999650 None:intergenic 25.0%
!! AATTTGACAAGAGATTTTCT+TGG - chr1.1:49000198-49000217 MS.gene073763:CDS 25.0%
!! TTATCTGAGATAGTTCAAAT+GGG - chr1.1:48999706-48999725 MS.gene073763:CDS 25.0%
!! TTTATCTGAGATAGTTCAAA+TGG - chr1.1:48999705-48999724 MS.gene073763:CDS 25.0%
!!! GGATTATATTTTTATGTGTC+TGG - chr1.1:48999277-48999296 MS.gene073763:CDS 25.0%
!!! TCCATTTTTAGTTCTAGTTT+TGG - chr1.1:48999964-48999983 MS.gene073763:CDS 25.0%
!!! TGTTGATATTTTGAACAGAA+AGG - chr1.1:48999336-48999355 MS.gene073763:CDS 25.0%
AAAGCTCATACAAAAACATG+TGG - chr1.1:48999050-48999069 MS.gene073763:CDS 30.0%
ATAAACCAGAAGAACCAAAA+AGG + chr1.1:48999690-48999709 None:intergenic 30.0%
ATCTGTGAAATATGCAACAA+AGG - chr1.1:48998774-48998793 MS.gene073763:CDS 30.0%
CAAGTAGATTTCAATGGAAT+TGG - chr1.1:48999571-48999590 MS.gene073763:intron 30.0%
GGAATACTTCAAAATATTGG+TGG - chr1.1:48999511-48999530 MS.gene073763:intron 30.0%
TAAACCAGAAGAACCAAAAA+GGG + chr1.1:48999689-48999708 None:intergenic 30.0%
TATCACTTTGGTTAAACCAA+GGG - chr1.1:48999635-48999654 MS.gene073763:intron 30.0%
TCTGTGAAATATGCAACAAA+GGG - chr1.1:48998775-48998794 MS.gene073763:CDS 30.0%
TCTTCTTCATCATCAATGTT+TGG - chr1.1:48999769-48999788 MS.gene073763:CDS 30.0%
TTATCACTTTGGTTAAACCA+AGG - chr1.1:48999634-48999653 MS.gene073763:intron 30.0%
!! CAAAGTTCTAATTCCCTTTT+TGG - chr1.1:48999673-48999692 MS.gene073763:intron 30.0%
!!! AGATTGGACTGCATATTTTT+TGG + chr1.1:48999024-48999043 None:intergenic 30.0%
AAACCAAGGGAATCATGAAA+TGG - chr1.1:48999648-48999667 MS.gene073763:intron 35.0%
AAAGGCCAAGTTTATCACTT+TGG - chr1.1:48999623-48999642 MS.gene073763:intron 35.0%
AACCAAGGGAATCATGAAAT+GGG - chr1.1:48999649-48999668 MS.gene073763:intron 35.0%
AACCTTCAACTACATAGAAG+AGG - chr1.1:48998813-48998832 MS.gene073763:CDS 35.0%
AAGAAGAAGAGAAATCTTCC+AGG - chr1.1:48998585-48998604 MS.gene073763:CDS 35.0%
AAGCACTTTAGTAGAAAGCA+CGG - chr1.1:48998969-48998988 MS.gene073763:CDS 35.0%
AATATGCAGTCCAATCTGAT+TGG - chr1.1:48999027-48999046 MS.gene073763:CDS 35.0%
AGAGAATACAAATGTGACTG+TGG - chr1.1:48999077-48999096 MS.gene073763:CDS 35.0%
AGTGAAGTGGATAGTGAAAA+AGG + chr1.1:48998498-48998517 None:intergenic 35.0%
CCAATCATGTATGTTGTGTT+AGG - chr1.1:48999229-48999248 MS.gene073763:CDS 35.0%
CCTAACACAACATACATGAT+TGG + chr1.1:48999232-48999251 None:intergenic 35.0%
CTATGATTATGGAGCAACAA+AGG - chr1.1:48999605-48999624 MS.gene073763:intron 35.0%
CTGATTACCTGTGAATTGAA+TGG + chr1.1:49000292-49000311 None:intergenic 35.0%
GAAGATTTCTCTTCTTCTTG+GGG + chr1.1:48998584-48998603 None:intergenic 35.0%
GGAAGATTTCTCTTCTTCTT+GGG + chr1.1:48998585-48998604 None:intergenic 35.0%
GTGAAGTGGATAGTGAAAAA+GGG + chr1.1:48998497-48998516 None:intergenic 35.0%
TATCCATGTGAACCAAATTG+TGG + chr1.1:48999547-48999566 None:intergenic 35.0%
TATGAGCTTTCCAATCAGAT+TGG + chr1.1:48999040-48999059 None:intergenic 35.0%
TCACAACATGGTTTATCACA+TGG - chr1.1:48999490-48999509 MS.gene073763:intron 35.0%
TCATATTTGTGACATGTACG+AGG - chr1.1:48999201-48999220 MS.gene073763:CDS 35.0%
TCTACTAGTTCAGCTATGTT+GGG - chr1.1:49000009-49000028 MS.gene073763:CDS 35.0%
TGATGAAGAAGAACAAAGCA+AGG + chr1.1:48999761-48999780 None:intergenic 35.0%
TGGAAGATTTCTCTTCTTCT+TGG + chr1.1:48998586-48998605 None:intergenic 35.0%
TTCTACTAGTTCAGCTATGT+TGG - chr1.1:49000008-49000027 MS.gene073763:CDS 35.0%
TTGAATATTATGCACCATGG+TGG - chr1.1:49000126-49000145 MS.gene073763:intron 35.0%
TTTCCTTGTTGATCACTTTG+TGG + chr1.1:49000105-49000124 None:intergenic 35.0%
! TTTTCACTATCCACTTCACT+TGG - chr1.1:48998498-48998517 MS.gene073763:CDS 35.0%
!! GCAAATTTTGCTATCTCTTG+AGG + chr1.1:49000264-49000283 None:intergenic 35.0%
!! GTTGAAGGTTTTGATCTCTT+TGG + chr1.1:48998803-48998822 None:intergenic 35.0%
!!! AATTCCCTTTTTGGTTCTTC+TGG - chr1.1:48999682-48999701 MS.gene073763:CDS 35.0%
AGCAGAAACAGTAACAGAAC+CGG + chr1.1:48999854-48999873 None:intergenic 40.0%
ATGAATATACCTGGTGTTCC+TGG + chr1.1:48998606-48998625 None:intergenic 40.0%
ATGTTGGGAAATAGTAGTGC+AGG - chr1.1:49000024-49000043 MS.gene073763:CDS 40.0%
CCACATTCACATTCACAACA+TGG - chr1.1:48999478-48999497 MS.gene073763:intron 40.0%
CCATGTTGTGAATGTGAATG+TGG + chr1.1:48999481-48999500 None:intergenic 40.0%
CTGCAAAAAGCAGCTCAAAT+GGG - chr1.1:48999898-48999917 MS.gene073763:CDS 40.0%
GACCTCTTCTATGTAGTTGA+AGG + chr1.1:48998818-48998837 None:intergenic 40.0%
GCTGAACTAGTAGAAGAAGA+AGG + chr1.1:49000003-49000022 None:intergenic 40.0%
GCTTCTTCCATTCAATTCAC+AGG - chr1.1:49000282-49000301 MS.gene073763:CDS 40.0%
GGAATTCCACATCCACAATT+TGG - chr1.1:48999532-48999551 MS.gene073763:intron 40.0%
TCTATCACCAAAGACACTCA+TGG - chr1.1:48998737-48998756 MS.gene073763:CDS 40.0%
TCTGCAAAAAGCAGCTCAAA+TGG - chr1.1:48999897-48999916 MS.gene073763:CDS 40.0%
TCTTGAGGTAGAAACTGATG+TGG + chr1.1:49000249-49000268 None:intergenic 40.0%
TGGTGATAGAGCAATAACCT+CGG + chr1.1:48998727-48998746 None:intergenic 40.0%
TGTGAACCAAATTGTGGATG+TGG + chr1.1:48999541-48999560 None:intergenic 40.0%
TTAACAAAGCCTGCTTCTTC+CGG - chr1.1:48999832-48999851 MS.gene073763:CDS 40.0%
TTTGTTGCCATGAGTGTCTT+TGG + chr1.1:48998747-48998766 None:intergenic 40.0%
! CAGAGCTTTTTGTGATGCAT+TGG - chr1.1:48999375-48999394 MS.gene073763:CDS 40.0%
! CATCCACAATTTGGTTCACA+TGG - chr1.1:48999541-48999560 MS.gene073763:intron 40.0%
! GAGCATTAGGTTTAGGGTTA+GGG + chr1.1:48998554-48998573 None:intergenic 40.0%
! GCAGATGTTGAATTTGAAGC+AGG + chr1.1:48999799-48999818 None:intergenic 40.0%
!! ACAGAAGGAGCATTAGGTTT+AGG + chr1.1:48998561-48998580 None:intergenic 40.0%
!! AGAGATTTTCTTGGTGTGAG+TGG - chr1.1:49000207-49000226 MS.gene073763:CDS 40.0%
!! CAGAAGGAGCATTAGGTTTA+GGG + chr1.1:48998560-48998579 None:intergenic 40.0%
!! TGGTTCTGGTTCAAACTCTA+TGG - chr1.1:49000158-49000177 MS.gene073763:intron 40.0%
ACTAAACCCACCAAGTGAAG+TGG + chr1.1:48998511-48998530 None:intergenic 45.0%
AGAAATCTTCCAGGAACACC+AGG - chr1.1:48998594-48998613 MS.gene073763:CDS 45.0%
AGAAGAGCAGTAGCTGACAT+TGG + chr1.1:48999880-48999899 None:intergenic 45.0%
AGATCACCAAGTGCTCTTGA+AGG + chr1.1:48998936-48998955 None:intergenic 45.0%
ATTATGCACCATGGTGGTTC+TGG - chr1.1:49000132-49000151 MS.gene073763:intron 45.0%
CACTATCCACTTCACTTGGT+GGG - chr1.1:48998502-48998521 MS.gene073763:CDS 45.0%
GATAGTGAAAAAGGGTCACC+AGG + chr1.1:48998489-48998508 None:intergenic 45.0%
GATCACCAAGTGCTCTTGAA+GGG + chr1.1:48998935-48998954 None:intergenic 45.0%
GATCTCTGTCTTAGCTTCCA+TGG + chr1.1:48998849-48998868 None:intergenic 45.0%
GGACCACAAAGTGATCAACA+AGG - chr1.1:49000099-49000118 MS.gene073763:intron 45.0%
GTCCCATTTCATGATTCCCT+TGG + chr1.1:48999654-48999673 None:intergenic 45.0%
TCACTATCCACTTCACTTGG+TGG - chr1.1:48998501-48998520 MS.gene073763:CDS 45.0%
TCTGTCTTAGCTTCCATGGA+AGG + chr1.1:48998845-48998864 None:intergenic 45.0%
! GAAAGCACGGTGAAAAGAAG+TGG - chr1.1:48998982-48999001 MS.gene073763:CDS 45.0%
! GGAGCATTAGGTTTAGGGTT+AGG + chr1.1:48998555-48998574 None:intergenic 45.0%
!! GATTTTCTTGGTGTGAGTGG+TGG - chr1.1:49000210-49000229 MS.gene073763:CDS 45.0%
AACCAGAACCAGAACCACCA+TGG + chr1.1:49000143-49000162 None:intergenic 50.0%
AGAGCAATAACCTCGGCATC+TGG + chr1.1:48998720-48998739 None:intergenic 50.0%
CAAGTGCTCTTGAAGGGTCA+TGG + chr1.1:48998929-48998948 None:intergenic 50.0%
CTATACAGATCCAGATGCCG+AGG - chr1.1:48998707-48998726 MS.gene073763:CDS 50.0%
CTCTTCTTCTTGGGGACAGA+AGG + chr1.1:48998576-48998595 None:intergenic 50.0%
GAAGAGGTCACAACCTTCCA+TGG - chr1.1:48998829-48998848 MS.gene073763:CDS 50.0%
GTAACAGAACCGGAAGAAGC+AGG + chr1.1:48999844-48999863 None:intergenic 50.0%
! AGAGCACTTGGTGATCTCAC+AGG - chr1.1:48998939-48998958 MS.gene073763:CDS 50.0%
! TGGTGGACACAAGTCTTCTC+TGG + chr1.1:48998909-48998928 None:intergenic 50.0%
! TTTCTTGGTGTGAGTGGTGG+AGG - chr1.1:49000213-49000232 MS.gene073763:CDS 50.0%
!! CATGACCCTTCAAGAGCACT+TGG - chr1.1:48998927-48998946 MS.gene073763:CDS 50.0%
!! TTGGGGACAGAAGGAGCATT+AGG + chr1.1:48998567-48998586 None:intergenic 50.0%
ACTGTGGCACCCTCTTCTCA+AGG - chr1.1:48999093-48999112 MS.gene073763:CDS 55.0%
GTGCTCTTGAAGGGTCATGG+TGG + chr1.1:48998926-48998945 None:intergenic 55.0%
! GTGAGTGGTGGAGGAAGAAC+TGG - chr1.1:49000222-49000241 MS.gene073763:CDS 55.0%
!! CACCATGGTGGTTCTGGTTC+TGG - chr1.1:49000138-49000157 MS.gene073763:intron 55.0%
!! GGTGGTTCTGGTTCTGGTTC+TGG - chr1.1:49000144-49000163 MS.gene073763:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 48998474 49000314 48998474 ID=MS.gene073763
chr1.1 mRNA 48998474 49000314 48998474 ID=MS.gene073763.t1;Parent=MS.gene073763
chr1.1 exon 49000173 49000314 49000173 ID=MS.gene073763.t1.exon1;Parent=MS.gene073763.t1
chr1.1 CDS 49000173 49000314 49000173 ID=cds.MS.gene073763.t1;Parent=MS.gene073763.t1
chr1.1 exon 48999674 49000073 48999674 ID=MS.gene073763.t1.exon2;Parent=MS.gene073763.t1
chr1.1 CDS 48999674 49000073 48999674 ID=cds.MS.gene073763.t1;Parent=MS.gene073763.t1
chr1.1 exon 48998474 48999434 48998474 ID=MS.gene073763.t1.exon3;Parent=MS.gene073763.t1
chr1.1 CDS 48998474 48999434 48998474 ID=cds.MS.gene073763.t1;Parent=MS.gene073763.t1
Gene Sequence

>MS.gene073763

ATGCAAATGATTCCTGGTGACCCTTTTTCACTATCCACTTCACTTGGTGGGTTTAGTACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATGCTCCTTCTGTCCCCAAGAAGAAGAGAAATCTTCCAGGAACACCAGGTATATTCATTCATGATTACAGAAATTTTTGTATGATTTTCAATTTGTTACTTTTTCATATATTTCAAATTGGTAATGGAAATTAATTTGACTATACAGATCCAGATGCCGAGGTTATTGCTCTATCACCAAAGACACTCATGGCAACAAACAGATTCATCTGTGAAATATGCAACAAAGGGTTCCAAAGAGATCAAAACCTTCAACTACATAGAAGAGGTCACAACCTTCCATGGAAGCTAAGACAGAGATCCAACAAAGATGTTATTAAGAAGAAAGTTTACATCTGTCCAGAGAAGACTTGTGTCCACCATGACCCTTCAAGAGCACTTGGTGATCTCACAGGTATAAAAAAGCACTTTAGTAGAAAGCACGGTGAAAAGAAGTGGAAATGTGAAAAATGTTCCAAAAAATATGCAGTCCAATCTGATTGGAAAGCTCATACAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAGGTATAATATTTAATATACTCTCCTTTTATTCACCAATCTTTTGTTTCTGTGATAAATCAATAAATGCTTCTTTAATTTATTCATATTCATATTTGTGACATGTACGAGGTTTTTCCAATCATGTATGTTGTGTTAGGTTTTGAATTTAATGCTTTCTTTAATGGATTATATTTTTATGTGTCTGGTTTTAAGTTTTAATTAAGTTTTAATGTCTGTTTTTTTGTTGATATTTTGAACAGAAAGGATAGTTTCATTACACACAGAGCTTTTTGTGATGCATTGGCAGAAGAGAGTGCAAGAGTAACTTCAGTTACAACAACAAATCTAAATTTTAAGAATGAAGAAGGTAGTGCTATGATGAATCCACATTCACATTCACAACATGGTTTATCACATGGAATACTTCAAAATATTGGTGGAATTCCACATCCACAATTTGGTTCACATGGATATCATCAAGTAGATTTCAATGGAATTGGAAACAACAATTCTATGATTATGGAGCAACAAAGGCCAAGTTTATCACTTTGGTTAAACCAAGGGAATCATGAAATGGGACAAAGTTCTAATTCCCTTTTTGGTTCTTCTGGTTTATCTGAGATAGTTCAAATGGGAAATGCTACTACTACTAATAATAATAATGCCTTGCTTTGTTCTTCTTCATCATCAATGTTTGGTGTACCTGCTTCAAATTCAACATCTGCTGCAAATCTTTCTTTAACAAAGCCTGCTTCTTCCGGTTCTGTTACTGTTTCTGCTACACCAATGTCAGCTACTGCTCTTCTGCAAAAAGCAGCTCAAATGGGTTCAACTAGAAGCAATACTAGTAATGATAATAATAACAACCCTTCCATTTTTAGTTCTAGTTTTGGTGTAATGACATCACCTTCTTCTTCTACTAGTTCAGCTATGTTGGGAAATAGTAGTGCAGGTGCAGCTGCTAATTATAGCTCAAATAGTAGTTTTGATCAATTTTTTATGCATGGACCACAAAGTGATCAACAAGGAAAATTGAATATTATGCACCATGGTGGTTCTGGTTCTGGTTCTGGTTCAAACTCTATGGATCAAGTACAACATAGTAATTTGACAAGAGATTTTCTTGGTGTGAGTGGTGGAGGAAGAACTGGTCCACATCAGTTTCTACCTCAAGAGATAGCAAAATTTGCTTCTTCCATTCAATTCACAGGTAATCAGTGA
Protein sequence

>MS.gene073763.t1

MQMIPGDPFSLSTSLGGFSTQEQNTNPNPKPNAPSVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARVTSVTTTNLNFKNEEGSAMMNPHSHSQHGLSHGILQNIGGIPHPQFGSHGYHQVDFNGIGNNNSMIMEQQRPSLSLWLNQGNHEMGQSSNSLFGSSGLSEIVQMGNATTTNNNNALLCSSSSSMFGVPASNSTSAANLSLTKPASSGSVTVSATPMSATALLQKAAQMGSTRSNTSNDNNNNPSIFSSSFGVMTSPSSSTSSAMLGNSSAGAAANYSSNSSFDQFFMHGPQSDQQGKLNIMHHGGSGSGSGSNSMDQVQHSNLTRDFLGVSGGGRTGPHQFLPQEIAKFASSIQFTGNQ