AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073877

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073877.t1 MTR_7g445710 87.050 278 27 3 106 378 270 543 4.69e-172 491
MS.gene073877.t1 MTR_7g445710 79.339 121 23 1 6 124 83 203 3.54e-58 198
MS.gene073877.t1 MTR_7g445530 85.887 248 26 3 106 348 270 513 3.91e-149 431
MS.gene073877.t1 MTR_7g445530 79.339 121 23 1 6 124 83 203 2.85e-58 197
MS.gene073877.t1 MTR_7g450730 76.136 264 34 2 119 378 267 505 2.07e-136 399
MS.gene073877.t1 MTR_7g450730 82.258 124 20 2 6 127 80 203 4.01e-62 207
MS.gene073877.t1 MTR_7g445600 59.767 343 73 3 6 348 79 356 1.60e-125 365
MS.gene073877.t1 MTR_5g013420 47.440 293 107 5 119 378 811 1089 3.05e-77 258
MS.gene073877.t1 MTR_5g013420 43.902 123 58 2 7 118 583 705 1.74e-24 105
MS.gene073877.t1 MTR_4g010830 46.416 293 110 5 119 378 702 980 4.84e-76 253
MS.gene073877.t1 MTR_4g010830 39.344 122 63 2 7 117 475 596 3.44e-19 90.1
MS.gene073877.t1 MTR_5g013420 47.099 293 108 5 119 378 811 1089 5.82e-76 254
MS.gene073877.t1 MTR_5g013420 43.902 123 58 2 7 118 583 705 1.69e-24 105
MS.gene073877.t1 MTR_7g445810 76.423 123 29 0 2 124 92 214 1.14e-60 197
MS.gene073877.t1 MTR_4g010550 43.007 286 98 7 127 378 210 464 2.93e-60 201
MS.gene073877.t1 MTR_4g010550 45.455 88 46 1 33 118 24 111 2.32e-19 89.7
MS.gene073877.t1 MTR_7g084090 34.219 301 147 8 119 378 467 757 2.33e-42 157
MS.gene073877.t1 MTR_1g048950 32.550 298 117 6 119 378 282 533 4.68e-42 155
MS.gene073877.t1 MTR_1g048950 38.060 134 69 4 6 127 35 166 1.68e-14 75.1
MS.gene073877.t1 MTR_7g052480 32.660 297 153 9 119 378 270 556 3.80e-40 149
MS.gene073877.t1 MTR_6g061270 34.219 301 147 8 119 378 404 694 9.91e-39 147
MS.gene073877.t1 MTR_3g011440 31.667 300 144 9 119 373 376 659 6.77e-37 141
MS.gene073877.t1 MTR_8g042750 30.667 300 146 11 118 373 402 683 3.61e-34 134
MS.gene073877.t1 MTR_8g071030 30.418 263 135 5 119 347 487 735 6.17e-34 133
MS.gene073877.t1 MTR_7g088370 32.653 294 130 11 119 373 436 700 1.18e-33 132
MS.gene073877.t1 MTR_8g070070 30.075 266 132 7 119 347 507 755 4.45e-33 131
MS.gene073877.t1 MTR_8g078490 36.735 196 92 4 183 378 1090 1253 4.72e-32 128
MS.gene073877.t1 MTR_8g070075 29.658 263 137 7 119 347 500 748 6.22e-32 127
MS.gene073877.t1 MTR_8g070075 42.553 94 46 3 33 118 293 386 7.62e-12 67.4
MS.gene073877.t1 MTR_6g061200 30.897 301 128 7 119 378 404 665 2.62e-31 125
MS.gene073877.t1 MTR_4g132610 36.500 200 87 5 183 378 884 1047 2.12e-30 123
MS.gene073877.t1 MTR_1g035420 28.782 271 143 7 119 354 396 651 1.77e-29 120
MS.gene073877.t1 MTR_1g035420 39.130 92 50 2 33 118 192 283 4.35e-11 64.7
MS.gene073877.t1 MTR_5g018850 35.354 198 92 5 183 378 1344 1507 2.27e-29 120
MS.gene073877.t1 MTR_0376s0030 26.909 275 143 7 114 347 303 560 1.20e-27 114
MS.gene073877.t1 MTR_6g044690 27.509 269 139 8 119 347 310 562 2.67e-27 113
MS.gene073877.t1 MTR_8g078505 35.071 211 95 7 168 373 360 533 4.28e-27 112
MS.gene073877.t1 MTR_6g043960 27.372 274 143 8 114 347 223 480 5.55e-26 109
MS.gene073877.t1 MTR_1g035400 28.309 272 145 7 119 355 315 571 7.78e-24 103
MS.gene073877.t1 MTR_2g054460 29.762 168 99 4 183 347 311 462 8.43e-22 97.1
MS.gene073877.t1 MTR_1g080340 32.536 209 108 8 170 376 407 584 1.05e-18 88.2
MS.gene073877.t1 MTR_1g069570 30.476 210 104 7 170 373 568 741 6.22e-17 82.8
MS.gene073877.t1 MTR_7g098390 28.934 197 101 7 183 373 534 697 7.68e-12 67.4
MS.gene073877.t1 MTR_6g027690 25.234 214 122 9 161 373 239 415 2.20e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073877.t1 AT2G22740 44.595 296 114 6 119 378 509 790 8.56e-73 242
MS.gene073877.t1 AT2G22740 40.157 127 59 4 7 118 272 396 1.15e-17 85.1
MS.gene073877.t1 AT2G22740 44.595 296 114 6 119 378 509 790 8.56e-73 242
MS.gene073877.t1 AT2G22740 40.157 127 59 4 7 118 272 396 1.15e-17 85.1
MS.gene073877.t1 AT2G35160 43.836 292 92 5 119 378 507 758 3.27e-72 239
MS.gene073877.t1 AT2G35160 44.882 127 52 5 7 118 273 396 4.35e-20 92.4
MS.gene073877.t1 AT2G35160 43.836 292 92 5 119 378 543 794 5.00e-72 240
MS.gene073877.t1 AT2G35160 44.882 127 52 5 7 118 309 432 4.46e-20 92.4
MS.gene073877.t1 AT2G35160 43.836 292 92 5 119 378 543 794 5.00e-72 240
MS.gene073877.t1 AT2G35160 44.882 127 52 5 7 118 309 432 4.46e-20 92.4
MS.gene073877.t1 AT2G35160 43.836 292 92 5 119 378 543 794 5.00e-72 240
MS.gene073877.t1 AT2G35160 44.882 127 52 5 7 118 309 432 4.46e-20 92.4
MS.gene073877.t1 AT2G35160 43.836 292 92 5 119 378 543 794 5.00e-72 240
MS.gene073877.t1 AT2G35160 44.882 127 52 5 7 118 309 432 4.46e-20 92.4
MS.gene073877.t1 AT5G13960 34.448 299 148 8 119 378 201 490 2.46e-42 154
MS.gene073877.t1 AT5G13960 34.448 299 148 8 119 378 335 624 9.08e-42 155
MS.gene073877.t1 AT5G04940 30.872 298 143 11 119 373 388 665 5.08e-32 127
MS.gene073877.t1 AT5G04940 30.872 298 143 11 119 373 388 665 5.08e-32 127
MS.gene073877.t1 AT1G73100 29.592 294 153 9 119 373 386 664 3.40e-31 125
MS.gene073877.t1 AT4G13460 29.924 264 137 5 119 347 386 636 3.72e-30 122
MS.gene073877.t1 AT4G13460 29.924 264 137 5 119 347 386 636 3.72e-30 122
MS.gene073877.t1 AT2G33290 27.143 280 147 8 119 361 388 647 2.08e-26 111
MS.gene073877.t1 AT2G33290 27.143 280 147 8 119 361 388 647 2.08e-26 111
MS.gene073877.t1 AT2G33290 27.143 280 147 8 119 361 388 647 2.08e-26 111
MS.gene073877.t1 AT2G33290 27.143 280 147 8 119 361 388 647 2.08e-26 111
MS.gene073877.t1 AT2G23740 31.937 191 101 4 183 373 1216 1377 2.86e-23 102
MS.gene073877.t1 AT2G23740 31.937 191 101 4 183 373 1216 1377 2.86e-23 102
MS.gene073877.t1 AT2G23740 31.937 191 101 4 183 373 1216 1377 2.86e-23 102
MS.gene073877.t1 AT2G23740 31.937 191 101 4 183 373 1209 1370 2.91e-23 102
MS.gene073877.t1 AT2G24740 28.621 290 154 10 118 373 480 750 1.28e-22 100
MS.gene073877.t1 AT1G17770 31.081 222 117 7 165 373 490 688 2.82e-22 99.0
MS.gene073877.t1 AT3G04380 32.536 209 107 8 170 376 257 433 1.88e-19 90.1
MS.gene073877.t1 AT3G04380 32.536 209 107 8 170 376 257 433 1.96e-19 90.1
MS.gene073877.t1 AT3G04380 32.536 209 107 8 170 376 241 417 1.98e-19 89.7
MS.gene073877.t1 AT3G04380 32.536 209 107 8 170 376 284 460 2.23e-19 90.1
MS.gene073877.t1 AT3G04380 32.536 209 107 8 170 376 268 444 2.63e-19 89.7
MS.gene073877.t1 AT3G04380 32.536 209 107 8 170 376 284 460 2.76e-19 89.7
MS.gene073877.t1 AT3G03750 28.796 191 108 5 183 373 183 345 1.46e-14 74.7
MS.gene073877.t1 AT1G04050 28.230 209 113 7 170 376 444 617 1.95e-14 75.1
MS.gene073877.t1 AT1G04050 28.230 209 113 7 170 376 548 721 2.11e-14 75.1
MS.gene073877.t1 AT1G04050 28.230 209 113 7 170 376 548 721 2.11e-14 75.1
MS.gene073877.t1 AT5G47150 40.385 104 56 3 20 118 141 243 1.46e-13 71.2
MS.gene073877.t1 AT1G76710 31.892 185 75 9 192 374 90 225 1.94e-12 68.9
MS.gene073877.t1 AT1G76710 31.892 185 75 9 192 374 90 225 1.94e-12 68.9
MS.gene073877.t1 AT1G76710 31.892 185 75 9 192 374 90 225 1.96e-12 68.9
MS.gene073877.t1 AT1G76710 31.892 185 75 9 192 374 90 225 2.05e-12 68.9
MS.gene073877.t1 AT2G23740 32.258 124 59 3 183 306 1216 1314 2.29e-12 69.3
MS.gene073877.t1 AT2G23740 32.258 124 59 3 183 306 1216 1314 2.29e-12 69.3
MS.gene073877.t1 AT5G47160 38.384 99 57 2 23 118 232 329 7.93e-11 63.5
MS.gene073877.t1 AT5G47160 38.384 99 57 2 23 118 232 329 7.93e-11 63.5
MS.gene073877.t1 AT5G47160 38.384 99 57 2 23 118 232 329 7.93e-11 63.5

Find 66 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACCACTTGAAGCTTCTA+AGG 0.221245 1.3:-26509016 None:intergenic
GATGAGTATTTATTTAATAT+TGG 0.247972 1.3:+26508913 MS.gene073877:CDS
AACATTTCGAGCAAACAAAT+TGG 0.261209 1.3:-26509133 None:intergenic
CGAGTAATGTATTGAAAATA+TGG 0.296319 1.3:-26508625 None:intergenic
ACAATTGATGCTGCTAAGTA+TGG 0.305938 1.3:+26509075 MS.gene073877:CDS
TCAGAGAATGCAATTCCTTC+TGG 0.338329 1.3:+26508823 MS.gene073877:CDS
GAATCTTCGAAAAGCCATTC+AGG 0.347836 1.3:-26508658 None:intergenic
TCTCATTGATTACGTGATAA+AGG 0.363505 1.3:+26508194 MS.gene073877:CDS
CTCGTAACATTTATCCTGAA+TGG 0.372209 1.3:+26508644 MS.gene073877:CDS
AGGTGAGATTATTGAAGATC+AGG 0.383100 1.3:+26508867 MS.gene073877:CDS
TTGTCACCTACTTCAATTCC+AGG 0.384331 1.3:-26508117 None:intergenic
ACAAAAGTGTTCGCTTATAC+AGG 0.386673 1.3:+26508273 MS.gene073877:CDS
AGAACCCGTGACACTTTGAT+AGG 0.402578 1.3:-26508042 None:intergenic
TTCATATATGGTTGATAGTA+AGG 0.403159 1.3:+26508975 MS.gene073877:CDS
ATGGGAAGAGGATTCATATA+TGG 0.412825 1.3:+26508963 MS.gene073877:CDS
GTGGTTAATCGTATAGATTC+TGG 0.413281 1.3:+26508595 MS.gene073877:CDS
ACAAATTGGGAGAACAACTA+TGG 0.427505 1.3:-26509119 None:intergenic
ACATTTCGAGCAAACAAATT+GGG 0.449844 1.3:-26509132 None:intergenic
ATACGATTAACCACACATAT+AGG 0.451047 1.3:-26508586 None:intergenic
TGGCAAGAACTCAATGTTGT+TGG 0.454774 1.3:+26508150 MS.gene073877:CDS
TTCACAAGGTCTATAGTTCA+TGG 0.458760 1.3:+26508944 MS.gene073877:CDS
CCCTCCACTCTTAAGAGCAC+AGG 0.461039 1.3:-26508719 None:intergenic
GATCAAGTGATTGATTCAAA+TGG 0.480841 1.3:+26509258 MS.gene073877:CDS
TTTGATAGGAAGCGCGTCGC+TGG 0.483676 1.3:-26508028 None:intergenic
AAAATTATTGGAAATGTCCC+TGG 0.496911 1.3:+26508099 MS.gene073877:CDS
CAAGACTAAGGCGAAAGGAT+GGG 0.513493 1.3:+26508792 MS.gene073877:CDS
CGTGCTCTCTGTGGAAAACT+CGG 0.520054 1.3:+26507994 MS.gene073877:CDS
TTTGTTAAAGATATTTCCAA+TGG 0.523563 1.3:+26508550 MS.gene073877:intron
GGTCTATAGTTCATGGGAAG+AGG 0.525490 1.3:+26508951 MS.gene073877:CDS
TAGGTGACAAGTTTCAGTAT+TGG 0.528561 1.3:+26508130 MS.gene073877:CDS
TCAAGACTAAGGCGAAAGGA+TGG 0.530216 1.3:+26508791 MS.gene073877:CDS
GCCTGTGCTCTTAAGAGTGG+AGG 0.530694 1.3:+26508718 MS.gene073877:CDS
CAAAAGTGTTCGCTTATACA+GGG 0.536291 1.3:+26508274 MS.gene073877:CDS
AGAAGCTTCAAGTGGTAAAG+AGG 0.540440 1.3:+26509020 MS.gene073877:CDS
AAGACTAAGGCGAAAGGATG+GGG 0.542189 1.3:+26508793 MS.gene073877:CDS
TTACCACTTGAAGCTTCTAA+GGG 0.542917 1.3:-26509015 None:intergenic
CTAAGTATGGTAACGTGGCA+AGG 0.558339 1.3:+26509088 MS.gene073877:CDS
ATTGATGATCGATGTGATAG+TGG 0.558469 1.3:+26509045 MS.gene073877:CDS
CGCTTCCTATCAAAGTGTCA+CGG 0.559927 1.3:+26508037 MS.gene073877:CDS
ACTATCACATCGATCATCAA+TGG 0.565161 1.3:-26509043 None:intergenic
TTTGCCTGTGCTCTTAAGAG+TGG 0.575325 1.3:+26508715 MS.gene073877:CDS
AAAAGTGTTCGCTTATACAG+GGG 0.575501 1.3:+26508275 MS.gene073877:CDS
AAGACGAAAGCATGTTATTG+CGG 0.583822 1.3:+26509288 MS.gene073877:CDS
CCTGTGCTCTTAAGAGTGGA+GGG 0.588175 1.3:+26508719 MS.gene073877:CDS
TCACAAGGTCTATAGTTCAT+GGG 0.590256 1.3:+26508945 MS.gene073877:CDS
AAAGTCAGCTCATTCATGCT+CGG 0.596521 1.3:-26509216 None:intergenic
GCTTCCTATCAAAGTGTCAC+GGG 0.597827 1.3:+26508038 MS.gene073877:CDS
TTTACAATGATGATGATCTG+AGG 0.599652 1.3:+26509157 MS.gene073877:CDS
GTGTTCGCTTATACAGGGGA+AGG 0.612431 1.3:+26508279 MS.gene073877:CDS
ATGATCGATGTGATAGTGGT+AGG 0.614728 1.3:+26509049 MS.gene073877:CDS
TATTGGCAATTATATTCACA+AGG 0.615507 1.3:+26508930 MS.gene073877:CDS
GAGGCAAGTACATTCACGAT+GGG 0.620401 1.3:+26508073 MS.gene073877:CDS
AATGTCCCTGGAATTGAAGT+AGG 0.621360 1.3:+26508111 MS.gene073877:CDS
AATCTCATCAATACAGTCGA+CGG 0.622465 1.3:-26509326 None:intergenic
GGTAACTTCCGTGCTCTCTG+TGG 0.631604 1.3:+26507985 MS.gene073877:CDS
TAATCGTATAGATTCTGGCA+AGG 0.632162 1.3:+26508600 MS.gene073877:CDS
TTCGCTTATACAGGGGAAGG+AGG 0.637940 1.3:+26508282 MS.gene073877:CDS
TGTCACCTACTTCAATTCCA+GGG 0.640833 1.3:-26508116 None:intergenic
TCACAAATAAAACTTCCAGA+AGG 0.644047 1.3:-26508838 None:intergenic
CAACCCTTAGAAGCTTCAAG+TGG 0.647600 1.3:+26509012 MS.gene073877:CDS
AGAACATTTACGCCCAACAG+AGG 0.655904 1.3:-26508680 None:intergenic
AGAAGCTGTTCCTATATGTG+TGG 0.665038 1.3:+26508576 MS.gene073877:CDS
AGAGGCAAGTACATTCACGA+TGG 0.665950 1.3:+26508072 MS.gene073877:CDS
TCACGGGTTCTAAAACAAAG+AGG 0.679698 1.3:+26508054 MS.gene073877:CDS
GCTGCATATAGCATGATGTG+TGG 0.717627 1.3:-26509183 None:intergenic
TGCTGCTAAGTATGGTAACG+TGG 0.728265 1.3:+26509083 MS.gene073877:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAGATTTTAAATTTAGTT+TGG + chr1.3:26508504-26508523 MS.gene073877:intron 10.0%
!! AACTTTATAATAACTCTAAT+AGG - chr1.3:26508378-26508397 None:intergenic 15.0%
!! ATAAAGTTTAATTCAAAGAA+AGG + chr1.3:26508390-26508409 MS.gene073877:intron 15.0%
!! GATGAGTATTTATTTAATAT+TGG + chr1.3:26508913-26508932 MS.gene073877:CDS 15.0%
!! TATTTGGGAAAAAAAAAAAA+GGG + chr1.3:26508479-26508498 MS.gene073877:intron 15.0%
!! TTATAAAGTTGAATCTATTT+GGG + chr1.3:26508464-26508483 MS.gene073877:intron 15.0%
!! TTTATAAAGTTGAATCTATT+TGG + chr1.3:26508463-26508482 MS.gene073877:intron 15.0%
!! CTATTTGGGAAAAAAAAAAA+AGG + chr1.3:26508478-26508497 MS.gene073877:intron 20.0%
!! TTAACAAAAAATTTCTGATC+AGG - chr1.3:26508538-26508557 None:intergenic 20.0%
!! TTTGTTAAAGATATTTCCAA+TGG + chr1.3:26508550-26508569 MS.gene073877:intron 20.0%
!!! AGTTTTATTTGTGAGTATTT+AGG + chr1.3:26508847-26508866 MS.gene073877:CDS 20.0%
! AAGTTTAATTCAAAGAAAGG+TGG + chr1.3:26508393-26508412 MS.gene073877:intron 25.0%
! CAGAAAGTAAAAACAACATT+AGG + chr1.3:26507964-26507983 MS.gene073877:CDS 25.0%
! CGAGTAATGTATTGAAAATA+TGG - chr1.3:26508628-26508647 None:intergenic 25.0%
! TATTGGCAATTATATTCACA+AGG + chr1.3:26508930-26508949 MS.gene073877:CDS 25.0%
!! AATTCTGGAAAATGTGATAA+AGG + chr1.3:26508315-26508334 MS.gene073877:intron 25.0%
!! ATTCTGGAAAATGTGATAAA+GGG + chr1.3:26508316-26508335 MS.gene073877:intron 25.0%
!!! ATCTCATTTTTCTTTACTCT+AGG - chr1.3:26508751-26508770 None:intergenic 25.0%
!!! ATGTTGTTTTTACTTTCTGA+AGG - chr1.3:26507963-26507982 None:intergenic 25.0%
!!! TTCATATATGGTTGATAGTA+AGG + chr1.3:26508975-26508994 MS.gene073877:CDS 25.0%
!!! TTCTTGTCATTTTGATGATA+TGG + chr1.3:26508245-26508264 MS.gene073877:CDS 25.0%
AAAATTATTGGAAATGTCCC+TGG + chr1.3:26508099-26508118 MS.gene073877:CDS 30.0%
AACATTTCGAGCAAACAAAT+TGG - chr1.3:26509136-26509155 None:intergenic 30.0%
ACATTTCGAGCAAACAAATT+GGG - chr1.3:26509135-26509154 None:intergenic 30.0%
ATACGATTAACCACACATAT+AGG - chr1.3:26508589-26508608 None:intergenic 30.0%
CACGATGGGAAAAAAATTAT+TGG + chr1.3:26508087-26508106 MS.gene073877:CDS 30.0%
TCACAAATAAAACTTCCAGA+AGG - chr1.3:26508841-26508860 None:intergenic 30.0%
TTTAATTCAAAGAAAGGTGG+TGG + chr1.3:26508396-26508415 MS.gene073877:intron 30.0%
! GATCAAGTGATTGATTCAAA+TGG + chr1.3:26509258-26509277 MS.gene073877:CDS 30.0%
! TCTCATTGATTACGTGATAA+AGG + chr1.3:26508194-26508213 MS.gene073877:CDS 30.0%
! TTTACAATGATGATGATCTG+AGG + chr1.3:26509157-26509176 MS.gene073877:CDS 30.0%
!! GCTTCAAATTTTCAAGACTA+AGG + chr1.3:26508780-26508799 MS.gene073877:CDS 30.0%
ACAAATTGGGAGAACAACTA+TGG - chr1.3:26509122-26509141 None:intergenic 35.0%
ACAATTGATGCTGCTAAGTA+TGG + chr1.3:26509075-26509094 MS.gene073877:CDS 35.0%
ACTATCACATCGATCATCAA+TGG - chr1.3:26509046-26509065 None:intergenic 35.0%
AGGTGAGATTATTGAAGATC+AGG + chr1.3:26508867-26508886 MS.gene073877:CDS 35.0%
ATGGGAAGAGGATTCATATA+TGG + chr1.3:26508963-26508982 MS.gene073877:CDS 35.0%
CTCGTAACATTTATCCTGAA+TGG + chr1.3:26508644-26508663 MS.gene073877:CDS 35.0%
GGAGGTAATGTCATTAATTC+TGG + chr1.3:26508300-26508319 MS.gene073877:intron 35.0%
GTGGTTAATCGTATAGATTC+TGG + chr1.3:26508595-26508614 MS.gene073877:CDS 35.0%
TAATCGTATAGATTCTGGCA+AGG + chr1.3:26508600-26508619 MS.gene073877:CDS 35.0%
TAGGTGACAAGTTTCAGTAT+TGG + chr1.3:26508130-26508149 MS.gene073877:CDS 35.0%
TCACAAGGTCTATAGTTCAT+GGG + chr1.3:26508945-26508964 MS.gene073877:CDS 35.0%
TTACCACTTGAAGCTTCTAA+GGG - chr1.3:26509018-26509037 None:intergenic 35.0%
TTCACAAGGTCTATAGTTCA+TGG + chr1.3:26508944-26508963 MS.gene073877:CDS 35.0%
TTTACCACTTGAAGCTTCTA+AGG - chr1.3:26509019-26509038 None:intergenic 35.0%
! AAGACGAAAGCATGTTATTG+CGG + chr1.3:26509288-26509307 MS.gene073877:CDS 35.0%
! ATTGATGATCGATGTGATAG+TGG + chr1.3:26509045-26509064 MS.gene073877:CDS 35.0%
! TTTTCGAAGATTCCTCTGTT+GGG + chr1.3:26508668-26508687 MS.gene073877:CDS 35.0%
!! AAAAGTGTTCGCTTATACAG+GGG + chr1.3:26508275-26508294 MS.gene073877:CDS 35.0%
!! ACAAAAGTGTTCGCTTATAC+AGG + chr1.3:26508273-26508292 MS.gene073877:CDS 35.0%
!! ATTTTCAAGACTAAGGCGAA+AGG + chr1.3:26508787-26508806 MS.gene073877:CDS 35.0%
!! CAAAAGTGTTCGCTTATACA+GGG + chr1.3:26508274-26508293 MS.gene073877:CDS 35.0%
AAAGTCAGCTCATTCATGCT+CGG - chr1.3:26509219-26509238 None:intergenic 40.0%
AATGTCCCTGGAATTGAAGT+AGG + chr1.3:26508111-26508130 MS.gene073877:CDS 40.0%
AGAAGCTGTTCCTATATGTG+TGG + chr1.3:26508576-26508595 MS.gene073877:CDS 40.0%
AGAAGCTTCAAGTGGTAAAG+AGG + chr1.3:26509020-26509039 MS.gene073877:CDS 40.0%
GAATCTTCGAAAAGCCATTC+AGG - chr1.3:26508661-26508680 None:intergenic 40.0%
TCAGAGAATGCAATTCCTTC+TGG + chr1.3:26508823-26508842 MS.gene073877:CDS 40.0%
TGGCAAGAACTCAATGTTGT+TGG + chr1.3:26508150-26508169 MS.gene073877:CDS 40.0%
TGTCACCTACTTCAATTCCA+GGG - chr1.3:26508119-26508138 None:intergenic 40.0%
TTGTCACCTACTTCAATTCC+AGG - chr1.3:26508120-26508139 None:intergenic 40.0%
! AATTCAAAGAAAGGTGGTGG+TGG + chr1.3:26508399-26508418 MS.gene073877:intron 40.0%
! AGGAACAGCTTCTTTTCCAT+TGG - chr1.3:26508569-26508588 None:intergenic 40.0%
! CTTTTCGAAGATTCCTCTGT+TGG + chr1.3:26508667-26508686 MS.gene073877:CDS 40.0%
! GAGGAGGTGTATTGTTACTA+TGG + chr1.3:26508438-26508457 MS.gene073877:intron 40.0%
!! ATGATCGATGTGATAGTGGT+AGG + chr1.3:26509049-26509068 MS.gene073877:CDS 40.0%
!! TCACGGGTTCTAAAACAAAG+AGG + chr1.3:26508054-26508073 MS.gene073877:CDS 40.0%
AAGACTAAGGCGAAAGGATG+GGG + chr1.3:26508793-26508812 MS.gene073877:CDS 45.0%
AGAACATTTACGCCCAACAG+AGG - chr1.3:26508683-26508702 None:intergenic 45.0%
AGAACCCGTGACACTTTGAT+AGG - chr1.3:26508045-26508064 None:intergenic 45.0%
AGAGGCAAGTACATTCACGA+TGG + chr1.3:26508072-26508091 MS.gene073877:CDS 45.0%
CAACCCTTAGAAGCTTCAAG+TGG + chr1.3:26509012-26509031 MS.gene073877:CDS 45.0%
CAAGACTAAGGCGAAAGGAT+GGG + chr1.3:26508792-26508811 MS.gene073877:CDS 45.0%
GAGGCAAGTACATTCACGAT+GGG + chr1.3:26508073-26508092 MS.gene073877:CDS 45.0%
GCTGCATATAGCATGATGTG+TGG - chr1.3:26509186-26509205 None:intergenic 45.0%
GGTCTATAGTTCATGGGAAG+AGG + chr1.3:26508951-26508970 MS.gene073877:CDS 45.0%
TCAAGACTAAGGCGAAAGGA+TGG + chr1.3:26508791-26508810 MS.gene073877:CDS 45.0%
TTTGCCTGTGCTCTTAAGAG+TGG + chr1.3:26508715-26508734 MS.gene073877:CDS 45.0%
! CGCTTCCTATCAAAGTGTCA+CGG + chr1.3:26508037-26508056 MS.gene073877:CDS 45.0%
! CTAAGTATGGTAACGTGGCA+AGG + chr1.3:26509088-26509107 MS.gene073877:CDS 45.0%
! GCTTCCTATCAAAGTGTCAC+GGG + chr1.3:26508038-26508057 MS.gene073877:CDS 45.0%
! TGCTGCTAAGTATGGTAACG+TGG + chr1.3:26509083-26509102 MS.gene073877:CDS 45.0%
CCTGTGCTCTTAAGAGTGGA+GGG + chr1.3:26508719-26508738 MS.gene073877:CDS 50.0%
CGTGCTCTCTGTGGAAAACT+CGG + chr1.3:26507994-26508013 MS.gene073877:CDS 50.0%
GTGTTCGCTTATACAGGGGA+AGG + chr1.3:26508279-26508298 MS.gene073877:CDS 50.0%
TTCGCTTATACAGGGGAAGG+AGG + chr1.3:26508282-26508301 MS.gene073877:CDS 50.0%
! CGAGTTTTCCACAGAGAGCA+CGG - chr1.3:26507996-26508015 None:intergenic 50.0%
GCCTGTGCTCTTAAGAGTGG+AGG + chr1.3:26508718-26508737 MS.gene073877:CDS 55.0%
GGTAACTTCCGTGCTCTCTG+TGG + chr1.3:26507985-26508004 MS.gene073877:CDS 55.0%
! CCCTCCACTCTTAAGAGCAC+AGG - chr1.3:26508722-26508741 None:intergenic 55.0%
! TTTGATAGGAAGCGCGTCGC+TGG - chr1.3:26508031-26508050 None:intergenic 55.0%
!! AAAGGTGGTGGTGGTGCACG+TGG + chr1.3:26508408-26508427 MS.gene073877:intron 60.0%
! TGCACGTGGTGGAGGTGAGG+AGG + chr1.3:26508422-26508441 MS.gene073877:intron 65.0%
! TGGTGCACGTGGTGGAGGTG+AGG + chr1.3:26508419-26508438 MS.gene073877:intron 65.0%
! GGTGGTGGTGCACGTGGTGG+AGG + chr1.3:26508414-26508433 MS.gene073877:intron 70.0%
!! GGTGGTGGTGGTGCACGTGG+TGG + chr1.3:26508411-26508430 MS.gene073877:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 26507949 26509341 26507949 ID=MS.gene073877
chr1.3 mRNA 26507949 26509341 26507949 ID=MS.gene073877.t1;Parent=MS.gene073877
chr1.3 exon 26507949 26508303 26507949 ID=MS.gene073877.t1.exon1;Parent=MS.gene073877.t1
chr1.3 CDS 26507949 26508303 26507949 ID=cds.MS.gene073877.t1;Parent=MS.gene073877.t1
chr1.3 exon 26508560 26509341 26508560 ID=MS.gene073877.t1.exon2;Parent=MS.gene073877.t1
chr1.3 CDS 26508560 26509341 26508560 ID=cds.MS.gene073877.t1;Parent=MS.gene073877.t1
Gene Sequence

>MS.gene073877

ATGCATATGAACCTTCAGAAAGTAAAAACAACATTAGGTAACTTCCGTGCTCTCTGTGGAAAACTCGGTAACGAATTTACCAGCGACGCGCTTCCTATCAAAGTGTCACGGGTTCTAAAACAAAGAGGCAAGTACATTCACGATGGGAAAAAAATTATTGGAAATGTCCCTGGAATTGAAGTAGGTGACAAGTTTCAGTATTGGCAAGAACTCAATGTTGTTGGTCTTCATCGTCAGAATCTAAGTCTCATTGATTACGTGATAAAGGATGATAATTTAATTGCAACTAGCATTGTTTCTTGTCATTTTGATGATATGGATGATACAAAAGTGTTCGCTTATACAGGGGAAGGAGGTAATGTCATTAATTCTGGAAAATGTGATAAAGGGAATCTTGCTCTGATGAATAGTTTTGCTGTTAAGAATCCTATTAGAGTTATTATAAAGTTTAATTCAAAGAAAGGTGGTGGTGGTGCACGTGGTGGAGGTGAGGAGGTGTATTGTTACTATGGTCTTTATAAAGTTGAATCTATTTGGGAAAAAAAAAAAAGGGAAATTAGATTTTAAATTTAGTTTGGTTAGATTGCCTGATCAGAAATTTTTTGTTAAAGATATTTCCAATGGAAAAGAAGCTGTTCCTATATGTGTGGTTAATCGTATAGATTCTGGCAAGGTTCCATATTTTCAATACATTACTCGTAACATTTATCCTGAATGGCTTTTCGAAGATTCCTCTGTTGGGCGTAAATGTTCTGATTCAATGAAATTTGCCTGTGCTCTTAAGAGTGGAGGGAAAATTCCTAGAGTAAAGAAAAATGAGATTAAATTTAAGCTTCAAATTTTCAAGACTAAGGCGAAAGGATGGGGTGTGAGATCAGAGAATGCAATTCCTTCTGGAAGTTTTATTTGTGAGTATTTAGGTGAGATTATTGAAGATCAGGAAGCTTTGAAAATAGTTGATAATGATGAGTATTTATTTAATATTGGCAATTATATTCACAAGGTCTATAGTTCATGGGAAGAGGATTCATATATGGTTGATAGTAAGGAGATGAGTTCATATCAACCCTTAGAAGCTTCAAGTGGTAAAGAGGCCATTGATGATCGATGTGATAGTGGTAGGTTTACAATTGATGCTGCTAAGTATGGTAACGTGGCAAGGTTTATCAACCATAGTTGTTCTCCCAATTTGTTTGCTCGAAATGTTCTTTACAATGATGATGATCTGAGGATTCCACACATCATGCTATATGCAGCTGAGAACATTCCGAGCATGAATGAGCTGACTTTGAATTACAATTACAAGATCGATCAAGTGATTGATTCAAATGGAAATTTAAAGACGAAAGCATGTTATTGCGGAGCTTCTGAATGCAACCGTCGACTGTATTGA
Protein sequence

>MS.gene073877.t1

MHMNLQKVKTTLGNFRALCGKLGNEFTSDALPIKVSRVLKQRGKYIHDGKKIIGNVPGIEVGDKFQYWQELNVVGLHRQNLSLIDYVIKDDNLIATSIVSCHFDDMDDTKVFAYTGEGDISNGKEAVPICVVNRIDSGKVPYFQYITRNIYPEWLFEDSSVGRKCSDSMKFACALKSGGKIPRVKKNEIKFKLQIFKTKAKGWGVRSENAIPSGSFICEYLGEIIEDQEALKIVDNDEYLFNIGNYIHKVYSSWEEDSYMVDSKEMSSYQPLEASSGKEAIDDRCDSGRFTIDAAKYGNVARFINHSCSPNLFARNVLYNDDDLRIPHIMLYAAENIPSMNELTLNYNYKIDQVIDSNGNLKTKACYCGASECNRRLY