AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073914

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073914.t1 MTR_1g045470 89.328 253 27 0 1 253 1 253 8.94e-170 471
MS.gene073914.t1 MTR_1g053575 61.049 267 66 9 1 253 1 243 6.21e-95 282
MS.gene073914.t1 MTR_7g116460 62.564 195 61 2 1 183 1 195 3.46e-81 243
MS.gene073914.t1 MTR_1g019820 43.506 154 71 5 95 242 2 145 3.10e-27 105
MS.gene073914.t1 MTR_7g100990 34.194 155 83 6 13 157 19 164 1.64e-15 75.1
MS.gene073914.t1 MTR_7g005280 32.639 144 85 4 13 154 23 156 3.05e-15 73.6
MS.gene073914.t1 MTR_3g096140 34.211 152 84 9 13 157 15 157 1.02e-12 66.6
MS.gene073914.t1 MTR_3g096140 34.211 152 84 9 13 157 15 157 2.14e-12 66.6
MS.gene073914.t1 MTR_2g093810 29.384 211 111 9 13 212 22 205 6.86e-12 64.7
MS.gene073914.t1 MTR_8g063550 30.065 153 93 8 11 157 12 156 9.54e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073914.t1 AT5G13180 34.247 146 81 6 13 154 22 156 9.48e-14 69.3
MS.gene073914.t1 AT3G10480 32.895 152 88 8 13 158 35 178 1.23e-12 67.4
MS.gene073914.t1 AT5G62380 32.026 153 95 6 13 162 15 161 2.18e-12 66.6
MS.gene073914.t1 AT5G62380 32.026 153 95 6 13 162 15 161 2.18e-12 66.6
MS.gene073914.t1 AT3G10480 32.680 153 88 8 13 158 35 179 7.57e-12 65.1
MS.gene073914.t1 AT5G08790 32.275 189 105 8 3 181 5 180 9.13e-12 64.3
MS.gene073914.t1 AT2G24430 29.730 148 94 5 13 157 24 164 1.25e-11 63.9
MS.gene073914.t1 AT2G24430 29.730 148 94 5 13 157 24 164 1.25e-11 63.9
MS.gene073914.t1 AT1G56010 27.957 186 107 11 13 188 27 195 5.27e-11 62.4
MS.gene073914.t1 AT2G33480 31.507 146 84 6 13 154 23 156 8.36e-11 61.2
MS.gene073914.t1 AT5G63790 32.919 161 89 6 3 154 48 198 8.52e-11 61.6

Find 58 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTACCGTTTGATTCGTTTCT+TGG 0.160450 1.1:+28502539 None:intergenic
AGTGGCAGATTTCTTCTTTA+AGG 0.216337 1.1:+28503377 None:intergenic
CAAAGAATCCATGGGAGATT+TGG 0.252767 1.1:-28503455 MS.gene073914:CDS
TCTGCATAGAACATAATTAT+TGG 0.253885 1.1:+28503066 None:intergenic
CCTCAACTCTTCTTCCAATA+AGG 0.285996 1.1:-28503589 MS.gene073914:CDS
AATGGGTGCGATAACCTTAT+TGG 0.291794 1.1:+28503575 None:intergenic
TAAGTTGATTACTTGGATTT+TGG 0.305325 1.1:+28501840 None:intergenic
GCACCATTGGACTTGGTAGA+TGG 0.309802 1.1:-28503338 MS.gene073914:CDS
CAGAACAATAATGGTTGGTT+AGG 0.310768 1.1:-28501875 MS.gene073914:CDS
ACAGTGACTGCGGCAGGTTC+AGG 0.347861 1.1:+28502968 None:intergenic
TCAGGAACGACTGTCTTTCT+TGG 0.364568 1.1:+28502986 None:intergenic
ATATGTAGCACTTACAGATT+TGG 0.368326 1.1:+28502427 None:intergenic
AAAGAATCCATGGGAGATTT+GGG 0.379921 1.1:-28503454 MS.gene073914:CDS
GCAAGAACAATAGTCTCTTT+TGG 0.383036 1.1:+28502464 None:intergenic
TTCATTGATAAGCAATCCTT+TGG 0.384426 1.1:-28503178 MS.gene073914:intron
TTCAAGAATGGTGATATGAT+TGG 0.399692 1.1:+28503497 None:intergenic
TTGTAGAAGTTCATTATCAA+TGG 0.404907 1.1:+28503557 None:intergenic
AGAACAATAATGGTTGGTTA+GGG 0.421939 1.1:-28501874 MS.gene073914:CDS
GCAAGATCCATCCACCATCT+TGG 0.430936 1.1:+28503220 None:intergenic
CAAGATCCATCCACCATCTT+GGG 0.431083 1.1:+28503221 None:intergenic
ATTCTTGAATATGATTTGTT+CGG 0.434843 1.1:-28503483 MS.gene073914:CDS
ATATTGTAGCAGAACAATAA+TGG 0.447201 1.1:-28501884 MS.gene073914:intron
TCAAGAATGGTGATATGATT+GGG 0.471621 1.1:+28503498 None:intergenic
TGGGAGATTTGGGAAGAGTT+CGG 0.477611 1.1:-28503444 MS.gene073914:CDS
CTTATTGGAAGAAGAGTTGA+GGG 0.477892 1.1:+28503590 None:intergenic
GAAACGAATCAAACGGTACT+GGG 0.481814 1.1:-28502535 MS.gene073914:CDS
AGAAACGAATCAAACGGTAC+TGG 0.483504 1.1:-28502536 MS.gene073914:CDS
TGTAGAAGTTCATTATCAAT+GGG 0.485791 1.1:+28503558 None:intergenic
AATCTCCCATGGATTCTTTG+CGG 0.489258 1.1:+28503458 None:intergenic
CACCATTGGACTTGGTAGAT+GGG 0.507896 1.1:-28503337 MS.gene073914:CDS
GAACAAATCATATTCAAGAA+TGG 0.524428 1.1:+28503485 None:intergenic
AACTCTTCCCAAATCTCCCA+TGG 0.530624 1.1:+28503447 None:intergenic
TGTAGCACTTACAGATTTGG+TGG 0.543882 1.1:+28502430 None:intergenic
TCGGCACCGCAAAGAATCCA+TGG 0.544845 1.1:-28503464 MS.gene073914:CDS
ACAGGTACAGTGACTGCGGC+AGG 0.546185 1.1:+28502962 None:intergenic
GAACCAAGAAACGAATCAAA+CGG 0.553906 1.1:-28502542 MS.gene073914:CDS
AAGAGTGACACTTCCCAAGA+TGG 0.562341 1.1:-28503234 MS.gene073914:CDS
GATTGCTTATCAATGAATTG+TGG 0.566276 1.1:+28503184 None:intergenic
TCACGCGTAGCTCGCACCAT+TGG 0.571107 1.1:-28503351 MS.gene073914:CDS
TGTAGCAGAACAATAATGGT+TGG 0.571144 1.1:-28501880 MS.gene073914:intron
TAATACAAAGTCTCAACGTA+AGG 0.571382 1.1:-28502510 MS.gene073914:CDS
ACACTTCCCAAGATGGTGGA+TGG 0.575047 1.1:-28503227 MS.gene073914:CDS
GCGAGCTACGCGTGAGCTAG+TGG 0.575601 1.1:+28503359 None:intergenic
GTAGCTCGCACCATTGGACT+TGG 0.575679 1.1:-28503345 MS.gene073914:CDS
TGCTTATCAATGAATTGTGG+AGG 0.585480 1.1:+28503187 None:intergenic
CCTTATTGGAAGAAGAGTTG+AGG 0.596076 1.1:+28503589 None:intergenic
ATTGGACTTGGTAGATGGGA+AGG 0.601702 1.1:-28503333 MS.gene073914:CDS
AAAGACAAGAACCAAATCCT+CGG 0.605189 1.1:-28503282 MS.gene073914:CDS
TTCCCATCTACCAAGTCCAA+TGG 0.611326 1.1:+28503335 None:intergenic
ATGGTGATATGATTGGGCAA+AGG 0.612759 1.1:+28503504 None:intergenic
CGGCACCGCAAAGAATCCAT+GGG 0.621679 1.1:-28503463 MS.gene073914:CDS
AGATGGGAAGGTGAAGACGC+TGG 0.631377 1.1:-28503321 MS.gene073914:CDS
AGTGACACTTCCCAAGATGG+TGG 0.639769 1.1:-28503231 MS.gene073914:CDS
GGAACTTCCTACTCGTATCG+TGG 0.641732 1.1:-28503423 MS.gene073914:CDS
GTAGCACTTACAGATTTGGT+GGG 0.644008 1.1:+28502431 None:intergenic
GAACAATAATGGTTGGTTAG+GGG 0.666558 1.1:-28501873 MS.gene073914:CDS
AAACGAATCAAACGGTACTG+GGG 0.701193 1.1:-28502534 MS.gene073914:CDS
ACTTACAGGTACAGTGACTG+CGG 0.729652 1.1:+28502958 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAATTTGAAAAATAAAT+AGG - chr1.1:28503117-28503136 MS.gene073914:intron 10.0%
!! ATTAAAATAGGAAATTGATT+TGG + chr1.1:28502635-28502654 None:intergenic 15.0%
!!! ATAAAATCTAATCTTTTTAC+CGG + chr1.1:28502454-28502473 None:intergenic 15.0%
!!! ATCATTGAAGTATTTTTTTA+AGG - chr1.1:28502664-28502683 MS.gene073914:intron 15.0%
!!! GCTTTTTTTTTTTTATAGAA+AGG + chr1.1:28503216-28503235 None:intergenic 15.0%
!!! TCATTGAAGTATTTTTTTAA+GGG - chr1.1:28502665-28502684 MS.gene073914:intron 15.0%
!!! TGTTTTTATCTCAATAAAAT+TGG + chr1.1:28503161-28503180 None:intergenic 15.0%
!! AAAAAGAAAAATATGTGGAA+TGG - chr1.1:28502817-28502836 MS.gene073914:intron 20.0%
!! ATCCATTCAAAATATTTCTT+TGG - chr1.1:28502571-28502590 MS.gene073914:CDS 20.0%
!! GATTAGCAAATCATTAAAAT+AGG + chr1.1:28502647-28502666 None:intergenic 20.0%
!! GATTGAAAGATCAATAATAA+GGG + chr1.1:28503387-28503406 None:intergenic 20.0%
!! TAAGGAAAAAGAAAAATATG+TGG - chr1.1:28502812-28502831 MS.gene073914:intron 20.0%
!! TAATAAAAGTAGTAACTTAC+AGG + chr1.1:28502363-28502382 None:intergenic 20.0%
!! TTAATTACCAAAAGATTTGA+TGG - chr1.1:28502389-28502408 MS.gene073914:intron 20.0%
!! TTACAAATAGGTTATTTGAA+CGG - chr1.1:28503095-28503114 MS.gene073914:intron 20.0%
!!! AATATTTTGAATGGATAGAA+TGG + chr1.1:28502567-28502586 None:intergenic 20.0%
!!! ATTCTTGAATATGATTTGTT+CGG - chr1.1:28501821-28501840 MS.gene073914:intron 20.0%
!!! TATTGATATTGTTGTTTTTC+CGG - chr1.1:28502432-28502451 MS.gene073914:intron 20.0%
!!! TCAAATCTTTTGGTAATTAA+AGG + chr1.1:28502389-28502408 None:intergenic 20.0%
!!! TCATATGTTTTTCTTACAAA+AGG + chr1.1:28503191-28503210 None:intergenic 20.0%
!!! TTCCAAAGAAATATTTTGAA+TGG + chr1.1:28502576-28502595 None:intergenic 20.0%
! AAAAACAAGAATGAAGATGA+TGG - chr1.1:28503495-28503514 MS.gene073914:CDS 25.0%
! ACAGTAAAACAGTTACAAAT+AGG - chr1.1:28503083-28503102 MS.gene073914:intron 25.0%
! ATATTGTAGCAGAACAATAA+TGG - chr1.1:28503420-28503439 MS.gene073914:CDS 25.0%
! CATTGTCTTATAGACAAATA+GGG + chr1.1:28503026-28503045 None:intergenic 25.0%
! GAACAAATCATATTCAAGAA+TGG + chr1.1:28501822-28501841 None:intergenic 25.0%
! GGATTGAAAGATCAATAATA+AGG + chr1.1:28503388-28503407 None:intergenic 25.0%
! TCATTGTCTTATAGACAAAT+AGG + chr1.1:28503027-28503046 None:intergenic 25.0%
! TCTGCATAGAACATAATTAT+TGG + chr1.1:28502241-28502260 None:intergenic 25.0%
! TGTAGAAGTTCATTATCAAT+GGG + chr1.1:28501749-28501768 None:intergenic 25.0%
! TTGTAGAAGTTCATTATCAA+TGG + chr1.1:28501750-28501769 None:intergenic 25.0%
!! ACTAAAACCATCAAATCTTT+TGG + chr1.1:28502399-28502418 None:intergenic 25.0%
!! ATCTTGTGCAACAATATTTT+TGG + chr1.1:28502295-28502314 None:intergenic 25.0%
!!! AACATTGTTCTTTTTCATTC+TGG - chr1.1:28502704-28502723 MS.gene073914:intron 25.0%
!!! TAAGTTGATTACTTGGATTT+TGG + chr1.1:28503467-28503486 None:intergenic 25.0%
!!! TTTTGTATCTTGTTTTTTGC+AGG - chr1.1:28502215-28502234 MS.gene073914:intron 25.0%
AAATCATGCACCAAATAACT+AGG + chr1.1:28502193-28502212 None:intergenic 30.0%
AATCATGCACCAAATAACTA+GGG + chr1.1:28502192-28502211 None:intergenic 30.0%
AGACCCTAAATAAAATGTGA+AGG + chr1.1:28503296-28503315 None:intergenic 30.0%
ATATGTAGCACTTACAGATT+TGG + chr1.1:28502880-28502899 None:intergenic 30.0%
CAAAAGGATTAGATAATGTG+CGG - chr1.1:28502499-28502518 MS.gene073914:CDS 30.0%
CCAAGTAATCAACTTAACAA+TGG - chr1.1:28503471-28503490 MS.gene073914:CDS 30.0%
CTACAATATGAGAATGAAAG+AGG + chr1.1:28503409-28503428 None:intergenic 30.0%
GATTGCTTATCAATGAATTG+TGG + chr1.1:28502123-28502142 None:intergenic 30.0%
TAATACAAAGTCTCAACGTA+AGG - chr1.1:28502794-28502813 MS.gene073914:intron 30.0%
TCAAGAATGGTGATATGATT+GGG + chr1.1:28501809-28501828 None:intergenic 30.0%
TGAATGGATAGAATGGATAA+AGG + chr1.1:28502560-28502579 None:intergenic 30.0%
TTCAAGAATGGTGATATGAT+TGG + chr1.1:28501810-28501829 None:intergenic 30.0%
TTCATTGATAAGCAATCCTT+TGG - chr1.1:28502126-28502145 MS.gene073914:intron 30.0%
! AGAACAATAATGGTTGGTTA+GGG - chr1.1:28503430-28503449 MS.gene073914:CDS 30.0%
! CATTATCTAATCCTTTTGGA+TGG + chr1.1:28502497-28502516 None:intergenic 30.0%
! TTTTTCATTCTGGATCTGTA+GGG - chr1.1:28502714-28502733 MS.gene073914:intron 30.0%
!! CCATTGTTAAGTTGATTACT+TGG + chr1.1:28503474-28503493 None:intergenic 30.0%
!! CGACCTTCACATTTTATTTA+GGG - chr1.1:28503290-28503309 MS.gene073914:CDS 30.0%
!! TCGACCTTCACATTTTATTT+AGG - chr1.1:28503289-28503308 MS.gene073914:CDS 30.0%
!! TGTTGTGAATTTTGTTGTAG+AGG + chr1.1:28501778-28501797 None:intergenic 30.0%
!!! GCAACAATATTTTTGGTTAC+AGG + chr1.1:28502288-28502307 None:intergenic 30.0%
AAAGAATCCATGGGAGATTT+GGG - chr1.1:28501850-28501869 MS.gene073914:intron 35.0%
AAAGACAAGAACCAAATCCT+CGG - chr1.1:28502022-28502041 MS.gene073914:intron 35.0%
ACTAGAGTCAAGACTTGAAA+AGG - chr1.1:28503059-28503078 MS.gene073914:CDS 35.0%
AGTGGCAGATTTCTTCTTTA+AGG + chr1.1:28501930-28501949 None:intergenic 35.0%
ATCTACTTCTTCGCTTGTAA+TGG + chr1.1:28503526-28503545 None:intergenic 35.0%
ATTACAAGCGAAGAAGTAGA+TGG - chr1.1:28503525-28503544 MS.gene073914:CDS 35.0%
CCTGAACATGAAAAAGGTTA+AGG + chr1.1:28503247-28503266 None:intergenic 35.0%
CTTATTGGAAGAAGAGTTGA+GGG + chr1.1:28501717-28501736 None:intergenic 35.0%
GAACCAAGAAACGAATCAAA+CGG - chr1.1:28502762-28502781 MS.gene073914:intron 35.0%
GAATCAAACGCTACAGATAT+TGG + chr1.1:28502165-28502184 None:intergenic 35.0%
GATTCTTAGCCCTAGTTATT+TGG - chr1.1:28502180-28502199 MS.gene073914:intron 35.0%
TGCTTATCAATGAATTGTGG+AGG + chr1.1:28502120-28502139 None:intergenic 35.0%
TGTAGCAGAACAATAATGGT+TGG - chr1.1:28503424-28503443 MS.gene073914:CDS 35.0%
TTTCCTCCTGAACATGAAAA+AGG + chr1.1:28503253-28503272 None:intergenic 35.0%
! ATGATGATGCTAGTATGTCT+TGG - chr1.1:28503556-28503575 MS.gene073914:CDS 35.0%
! CAGAACAATAATGGTTGGTT+AGG - chr1.1:28503429-28503448 MS.gene073914:CDS 35.0%
! CGCACATTATCTAATCCTTT+TGG + chr1.1:28502501-28502520 None:intergenic 35.0%
! GAACAATAATGGTTGGTTAG+GGG - chr1.1:28503431-28503450 MS.gene073914:CDS 35.0%
! GCAAGAACAATAGTCTCTTT+TGG + chr1.1:28502843-28502862 None:intergenic 35.0%
!! CCTTAACCTTTTTCATGTTC+AGG - chr1.1:28503244-28503263 MS.gene073914:CDS 35.0%
!! CTTTTTCATTCTGGATCTGT+AGG - chr1.1:28502713-28502732 MS.gene073914:intron 35.0%
!! TAACCTTTTTCATGTTCAGG+AGG - chr1.1:28503247-28503266 MS.gene073914:CDS 35.0%
AAACGAATCAAACGGTACTG+GGG - chr1.1:28502770-28502789 MS.gene073914:intron 40.0%
AATCTCCCATGGATTCTTTG+CGG + chr1.1:28501849-28501868 None:intergenic 40.0%
AATGGGTGCGATAACCTTAT+TGG + chr1.1:28501732-28501751 None:intergenic 40.0%
AGAAACGAATCAAACGGTAC+TGG - chr1.1:28502768-28502787 MS.gene073914:intron 40.0%
AGCTGCAATGAAAACAACTC+AGG + chr1.1:28503582-28503601 None:intergenic 40.0%
ATGGTGATATGATTGGGCAA+AGG + chr1.1:28501803-28501822 None:intergenic 40.0%
CAAAGAATCCATGGGAGATT+TGG - chr1.1:28501849-28501868 MS.gene073914:intron 40.0%
CCTCAACTCTTCTTCCAATA+AGG - chr1.1:28501715-28501734 MS.gene073914:intron 40.0%
CCTTATTGGAAGAAGAGTTG+AGG + chr1.1:28501718-28501737 None:intergenic 40.0%
CTAACTTCTGTCCATCCAAA+AGG - chr1.1:28502483-28502502 MS.gene073914:CDS 40.0%
GAAACGAATCAAACGGTACT+GGG - chr1.1:28502769-28502788 MS.gene073914:intron 40.0%
GCTACAGATATTGGAACCTA+GGG + chr1.1:28502156-28502175 None:intergenic 40.0%
TGTAGCACTTACAGATTTGG+TGG + chr1.1:28502877-28502896 None:intergenic 40.0%
! GTACCGTTTGATTCGTTTCT+TGG + chr1.1:28502768-28502787 None:intergenic 40.0%
! GTAGCACTTACAGATTTGGT+GGG + chr1.1:28502876-28502895 None:intergenic 40.0%
!!! GAAAACGTTTTTTCATGCCG+AGG + chr1.1:28502042-28502061 None:intergenic 40.0%
!!! GTTTTTTCATGCCGAGGATT+TGG + chr1.1:28502036-28502055 None:intergenic 40.0%
AACTCTTCCCAAATCTCCCA+TGG + chr1.1:28501860-28501879 None:intergenic 45.0%
AAGAGTGACACTTCCCAAGA+TGG - chr1.1:28502070-28502089 MS.gene073914:intron 45.0%
ACTTACAGGTACAGTGACTG+CGG + chr1.1:28502349-28502368 None:intergenic 45.0%
CAAGATCCATCCACCATCTT+GGG + chr1.1:28502086-28502105 None:intergenic 45.0%
CGCTACAGATATTGGAACCT+AGG + chr1.1:28502157-28502176 None:intergenic 45.0%
TCAGGAACGACTGTCTTTCT+TGG + chr1.1:28502321-28502340 None:intergenic 45.0%
TGGGAGATTTGGGAAGAGTT+CGG - chr1.1:28501860-28501879 MS.gene073914:CDS 45.0%
TTCCCATCTACCAAGTCCAA+TGG + chr1.1:28501972-28501991 None:intergenic 45.0%
! ATTGGACTTGGTAGATGGGA+AGG - chr1.1:28501971-28501990 MS.gene073914:intron 45.0%
! CACCATTGGACTTGGTAGAT+GGG - chr1.1:28501967-28501986 MS.gene073914:intron 45.0%
! GCGGATTATGAACTGTGCTA+GGG - chr1.1:28502518-28502537 MS.gene073914:CDS 45.0%
! GTCTTTTCCACGATACGAGT+AGG + chr1.1:28501891-28501910 None:intergenic 45.0%
! TGCGGATTATGAACTGTGCT+AGG - chr1.1:28502517-28502536 MS.gene073914:CDS 45.0%
AGTGACACTTCCCAAGATGG+TGG - chr1.1:28502073-28502092 MS.gene073914:intron 50.0%
GCAAGATCCATCCACCATCT+TGG + chr1.1:28502087-28502106 None:intergenic 50.0%
GCAATCCTTTGGTAAGCCCT+AGG - chr1.1:28502137-28502156 MS.gene073914:intron 50.0%
GGAACTTCCTACTCGTATCG+TGG - chr1.1:28501881-28501900 MS.gene073914:intron 50.0%
TGGAACCTAGGGCTTACCAA+AGG + chr1.1:28502145-28502164 None:intergenic 50.0%
! GCACCATTGGACTTGGTAGA+TGG - chr1.1:28501966-28501985 MS.gene073914:intron 50.0%
!! ACACTTCCCAAGATGGTGGA+TGG - chr1.1:28502077-28502096 MS.gene073914:intron 50.0%
AGATGGGAAGGTGAAGACGC+TGG - chr1.1:28501983-28502002 MS.gene073914:intron 55.0%
CGGCACCGCAAAGAATCCAT+GGG - chr1.1:28501841-28501860 MS.gene073914:intron 55.0%
GTAGCTCGCACCATTGGACT+TGG - chr1.1:28501959-28501978 MS.gene073914:intron 55.0%
TCGGCACCGCAAAGAATCCA+TGG - chr1.1:28501840-28501859 MS.gene073914:intron 55.0%
ACAGGTACAGTGACTGCGGC+AGG + chr1.1:28502345-28502364 None:intergenic 60.0%
ACAGTGACTGCGGCAGGTTC+AGG + chr1.1:28502339-28502358 None:intergenic 60.0%
TCACGCGTAGCTCGCACCAT+TGG - chr1.1:28501953-28501972 MS.gene073914:intron 60.0%
GCGAGCTACGCGTGAGCTAG+TGG + chr1.1:28501948-28501967 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 28501710 28503616 28501710 ID=MS.gene073914
chr1.1 mRNA 28501710 28503616 28501710 ID=MS.gene073914.t1;Parent=MS.gene073914
chr1.1 exon 28503179 28503616 28503179 ID=MS.gene073914.t1.exon1;Parent=MS.gene073914.t1
chr1.1 CDS 28503179 28503616 28503179 ID=cds.MS.gene073914.t1;Parent=MS.gene073914.t1
chr1.1 exon 28502964 28503089 28502964 ID=MS.gene073914.t1.exon2;Parent=MS.gene073914.t1
chr1.1 CDS 28502964 28503089 28502964 ID=cds.MS.gene073914.t1;Parent=MS.gene073914.t1
chr1.1 exon 28502442 28502591 28502442 ID=MS.gene073914.t1.exon3;Parent=MS.gene073914.t1
chr1.1 CDS 28502442 28502591 28502442 ID=cds.MS.gene073914.t1;Parent=MS.gene073914.t1
chr1.1 exon 28501852 28501897 28501852 ID=MS.gene073914.t1.exon4;Parent=MS.gene073914.t1
chr1.1 CDS 28501852 28501897 28501852 ID=cds.MS.gene073914.t1;Parent=MS.gene073914.t1
chr1.1 exon 28501710 28501726 28501710 ID=MS.gene073914.t1.exon5;Parent=MS.gene073914.t1
chr1.1 CDS 28501710 28501726 28501710 ID=cds.MS.gene073914.t1;Parent=MS.gene073914.t1
Gene Sequence

>MS.gene073914

ATGGCCCTCAACTCTTCTTCCAATAAGGTTATCGCACCCATTGATAATGAACTTCTACAACAATTCCTCTACAACAAAATTCACAACAAACCTTTGCCCAATCATATCACCATTCTTGAATATGATTTGTTCGGCACCGCAAAGAATCCATGGGAGATTTGGGAAGAGTTCGGAACTTCCTACTCGTATCGTGGAAAAGACTTATACTTCTTTACAACCTTAAAGAAGAAATCTGCCACTAGCTCACGCGTAGCTCGCACCATTGGACTTGGTAGATGGGAAGGTGAAGACGCTGGAAAAAATATATTGAGCAAAGACAAGAACCAAATCCTCGGCATGAAAAAACGTTTTCGCTTTGAGAAGAGTGACACTTCCCAAGATGGTGGATGGATCTTGCATGAATATAGCCTCCACAATTCATTGATAAGCAATCCTTTGGTAAGCCCTAGGTTCCAATATCTGTAGCGTTTGATTCTTAGCCCTAGTTATTTGGTGCATGATTTGATTTTGTATCTTGTTTTTTGCAGGCCAATAATTATGTTCTATGCAGATTTAGAAAGAATTGCACTCACTTACCTGTAACCAAAAATATTGTTGCACAAGATAAACCAAGAAAGACAGTCGTTCCTGAACCTGCCGCAGTCACTGTACCTGTAAGTTACTACTTTTATTAAATCCTTTAATTACCAAAAGATTTGATGGTTTTAGTTGATTCTTTATGATATTGATATTGTTGTTTTTCCGGTAAAAAGATTAGATTTTATGTCTTCTTTCTAACTTCTGTCCATCCAAAAGGATTAGATAATGTGCGGATTATGAACTGTGCTAGGGTTTGTTTTACTTTTAACCTTTATCCATTCTATCCATTCAAAATATTTCTTTGGAAAATTTTCACATAAGCTTTGATTGATTTGATCATAAACCAAATCAATTTCCTATTTTAATGATTTGCTAATCATTGAAGTATTTTTTTAAGGGAATCATTTAACTACTTAACATTGTTCTTTTTCATTCTGGATCTGTAGGGCAAGAGAAAATATATAATTTATGAAGAACCAAGAAACGAATCAAACGGTACTGGGGTTAATACAAAGTCTCAACGTAAGGAAAAAGAAAAATATGTGGAATGGCCAAAAGAGACTATTGTTCTTGCACTCGAAGCACCCACCAAATCTGTAAGTGCTACATATATTTACATTTGTTAATTATTGTTGACACAGATTTTAGTTTGTTGTTTTTTTAAGTATTTTTATTTTGTTGTTATATATTATTTATTAACAATTGATCGTATGTAATACATTTTTATAGAGATACCCTATTTGTCTATAAGACAATGATTTTTATAAATTACTAGAGTCAAGACTTGAAAAGGAACAGTAAAACAGTTACAAATAGGTTATTTGAACGGTAAAATTTGAAAAATAAATAGGAAACAAAAATAAAATTCGCCAATTTTATTGAGATAAAAACATATGATTCCTTTTGTAAGAAAAACATATGAATCCTTTCTATAAAAAAAAAAAAGCATATGAATCCTTAACCTTTTTCATGTTCAGGAGGAAAAAAAAAACAAATACTGTCGACCTTCACATTTTATTTAGGGTCTAATATTATATTGAGTTAGAATAAATCAGACTAAATCACTTTACATTTTAATTGTGTTGATCTTTCAATCCCTTATTATTGATCTTTCAATCCTCTTTCATTCTCATATTGTAGCAGAACAATAATGGTTGGTTAGGGGAAGATATTGACCAAAATCCAAGTAATCAACTTAACAATGGAAAAAACAAGAATGAAGATGATGGTGATGCCATTACAAGCGAAGAAGTAGATGGCGATGAAGATGATGATGCTAGTATGTCTTGGCCTGAGTTGTTTTCATTGCAGCTGAGAAAAATGAATGA
Protein sequence

>MS.gene073914.t1

MALNSSSNKVIAPIDNELLQQFLYNKIHNKPLPNHITILEYDLFGTAKNPWEIWEEFGTSYSYRGKDLYFFTTLKKKSATSSRVARTIGLGRWEGEDAGKNILSKDKNQILGMKKRFRFEKSDTSQDGGWILHEYSLHNSLISNPLANNYVLCRFRKNCTHLPVTKNIVAQDKPRKTVVPEPAAVTVPGKRKYIIYEEPRNESNGTGVNTKSQRKEKEKYVEWPKETIVLALEAPTKSQNNNGWLGEDIDQNPTEKNE