AlfalfaGEDB | MS.gene073914

M. sativa cultivar XinJiangDaYe / MS.gene073914

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073914.t1	XP_003590172.1	88.3	256	30	0	1	256	1	256	4.10E-127	464.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073914.t1	Q9FY93	33.8	145	83	5	13	154	22	156	1.9e-11	71.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073914.t1	G7I6N9	88.3	256	30	0	1	256	1	256	2.9e-127	464.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene073914.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073914.t1	MTR_1g045470	89.328	253	27	0	1	253	1	253	8.94e-170	471
MS.gene073914.t1	MTR_1g053575	61.049	267	66	9	1	253	1	243	6.21e-95	282
MS.gene073914.t1	MTR_7g116460	62.564	195	61	2	1	183	1	195	3.46e-81	243
MS.gene073914.t1	MTR_1g019820	43.506	154	71	5	95	242	2	145	3.10e-27	105
MS.gene073914.t1	MTR_7g100990	34.194	155	83	6	13	157	19	164	1.64e-15	75.1
MS.gene073914.t1	MTR_7g005280	32.639	144	85	4	13	154	23	156	3.05e-15	73.6
MS.gene073914.t1	MTR_3g096140	34.211	152	84	9	13	157	15	157	1.02e-12	66.6
MS.gene073914.t1	MTR_3g096140	34.211	152	84	9	13	157	15	157	2.14e-12	66.6
MS.gene073914.t1	MTR_2g093810	29.384	211	111	9	13	212	22	205	6.86e-12	64.7
MS.gene073914.t1	MTR_8g063550	30.065	153	93	8	11	157	12	156	9.54e-11	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073914.t1	AT5G13180	34.247	146	81	6	13	154	22	156	9.48e-14	69.3
MS.gene073914.t1	AT3G10480	32.895	152	88	8	13	158	35	178	1.23e-12	67.4
MS.gene073914.t1	AT5G62380	32.026	153	95	6	13	162	15	161	2.18e-12	66.6
MS.gene073914.t1	AT5G62380	32.026	153	95	6	13	162	15	161	2.18e-12	66.6
MS.gene073914.t1	AT3G10480	32.680	153	88	8	13	158	35	179	7.57e-12	65.1
MS.gene073914.t1	AT5G08790	32.275	189	105	8	3	181	5	180	9.13e-12	64.3
MS.gene073914.t1	AT2G24430	29.730	148	94	5	13	157	24	164	1.25e-11	63.9
MS.gene073914.t1	AT2G24430	29.730	148	94	5	13	157	24	164	1.25e-11	63.9
MS.gene073914.t1	AT1G56010	27.957	186	107	11	13	188	27	195	5.27e-11	62.4
MS.gene073914.t1	AT2G33480	31.507	146	84	6	13	154	23	156	8.36e-11	61.2

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Find 58 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAATCAAACGGTACTG+GGG	0.701193	1.1:-28502534	MS.gene073914:CDS
AAAGAATCCATGGGAGATTT+GGG	0.379921	1.1:-28503454	MS.gene073914:CDS
AAAGACAAGAACCAAATCCT+CGG	0.605189	1.1:-28503282	MS.gene073914:CDS
AACTCTTCCCAAATCTCCCA+TGG	0.530624	1.1:+28503447	None:intergenic
AAGAGTGACACTTCCCAAGA+TGG	0.562341	1.1:-28503234	MS.gene073914:CDS
AATCTCCCATGGATTCTTTG+CGG	0.489258	1.1:+28503458	None:intergenic
AATGGGTGCGATAACCTTAT+TGG	0.291794	1.1:+28503575	None:intergenic
ACACTTCCCAAGATGGTGGA+TGG	0.575047	1.1:-28503227	MS.gene073914:CDS
ACAGGTACAGTGACTGCGGC+AGG	0.546185	1.1:+28502962	None:intergenic
ACAGTGACTGCGGCAGGTTC+AGG	0.347861	1.1:+28502968	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCATGCACCAAATAACT+AGG	+	chr1.1:28502193-28502212	None:intergenic	30.0%
AATCATGCACCAAATAACTA+GGG	+	chr1.1:28502192-28502211	None:intergenic	30.0%
AGACCCTAAATAAAATGTGA+AGG	+	chr1.1:28503296-28503315	None:intergenic	30.0%
ATATGTAGCACTTACAGATT+TGG	+	chr1.1:28502880-28502899	None:intergenic	30.0%
CAAAAGGATTAGATAATGTG+CGG	-	chr1.1:28502499-28502518	MS.gene073914:CDS	30.0%
CCAAGTAATCAACTTAACAA+TGG	-	chr1.1:28503471-28503490	MS.gene073914:CDS	30.0%
CTACAATATGAGAATGAAAG+AGG	+	chr1.1:28503409-28503428	None:intergenic	30.0%
GATTGCTTATCAATGAATTG+TGG	+	chr1.1:28502123-28502142	None:intergenic	30.0%
TAATACAAAGTCTCAACGTA+AGG	-	chr1.1:28502794-28502813	MS.gene073914:intron	30.0%
TCAAGAATGGTGATATGATT+GGG	+	chr1.1:28501809-28501828	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	28501710	28503616	28501710	ID=MS.gene073914
chr1.1	mRNA	28501710	28503616	28501710	ID=MS.gene073914.t1;Parent=MS.gene073914
chr1.1	exon	28503179	28503616	28503179	ID=MS.gene073914.t1.exon1;Parent=MS.gene073914.t1
chr1.1	CDS	28503179	28503616	28503179	ID=cds.MS.gene073914.t1;Parent=MS.gene073914.t1
chr1.1	exon	28502964	28503089	28502964	ID=MS.gene073914.t1.exon2;Parent=MS.gene073914.t1
chr1.1	CDS	28502964	28503089	28502964	ID=cds.MS.gene073914.t1;Parent=MS.gene073914.t1
chr1.1	exon	28502442	28502591	28502442	ID=MS.gene073914.t1.exon3;Parent=MS.gene073914.t1
chr1.1	CDS	28502442	28502591	28502442	ID=cds.MS.gene073914.t1;Parent=MS.gene073914.t1
chr1.1	exon	28501852	28501897	28501852	ID=MS.gene073914.t1.exon4;Parent=MS.gene073914.t1
chr1.1	CDS	28501852	28501897	28501852	ID=cds.MS.gene073914.t1;Parent=MS.gene073914.t1
chr1.1	exon	28501710	28501726	28501710	ID=MS.gene073914.t1.exon5;Parent=MS.gene073914.t1
chr1.1	CDS	28501710	28501726	28501710	ID=cds.MS.gene073914.t1;Parent=MS.gene073914.t1

Gene Sequence

>MS.gene073914

ATGGCCCTCAACTCTTCTTCCAATAAGGTTATCGCACCCATTGATAATGAACTTCTACAACAATTCCTCTACAACAAAATTCACAACAAACCTTTGCCCAATCATATCACCATTCTTGAATATGATTTGTTCGGCACCGCAAAGAATCCATGGGAGATTTGGGAAGAGTTCGGAACTTCCTACTCGTATCGTGGAAAAGACTTATACTTCTTTACAACCTTAAAGAAGAAATCTGCCACTAGCTCACGCGTAGCTCGCACCATTGGACTTGGTAGATGGGAAGGTGAAGACGCTGGAAAAAATATATTGAGCAAAGACAAGAACCAAATCCTCGGCATGAAAAAACGTTTTCGCTTTGAGAAGAGTGACACTTCCCAAGATGGTGGATGGATCTTGCATGAATATAGCCTCCACAATTCATTGATAAGCAATCCTTTGGTAAGCCCTAGGTTCCAATATCTGTAGCGTTTGATTCTTAGCCCTAGTTATTTGGTGCATGATTTGATTTTGTATCTTGTTTTTTGCAGGCCAATAATTATGTTCTATGCAGATTTAGAAAGAATTGCACTCACTTACCTGTAACCAAAAATATTGTTGCACAAGATAAACCAAGAAAGACAGTCGTTCCTGAACCTGCCGCAGTCACTGTACCTGTAAGTTACTACTTTTATTAAATCCTTTAATTACCAAAAGATTTGATGGTTTTAGTTGATTCTTTATGATATTGATATTGTTGTTTTTCCGGTAAAAAGATTAGATTTTATGTCTTCTTTCTAACTTCTGTCCATCCAAAAGGATTAGATAATGTGCGGATTATGAACTGTGCTAGGGTTTGTTTTACTTTTAACCTTTATCCATTCTATCCATTCAAAATATTTCTTTGGAAAATTTTCACATAAGCTTTGATTGATTTGATCATAAACCAAATCAATTTCCTATTTTAATGATTTGCTAATCATTGAAGTATTTTTTTAAGGGAATCATTTAACTACTTAACATTGTTCTTTTTCATTCTGGATCTGTAGGGCAAGAGAAAATATATAATTTATGAAGAACCAAGAAACGAATCAAACGGTACTGGGGTTAATACAAAGTCTCAACGTAAGGAAAAAGAAAAATATGTGGAATGGCCAAAAGAGACTATTGTTCTTGCACTCGAAGCACCCACCAAATCTGTAAGTGCTACATATATTTACATTTGTTAATTATTGTTGACACAGATTTTAGTTTGTTGTTTTTTTAAGTATTTTTATTTTGTTGTTATATATTATTTATTAACAATTGATCGTATGTAATACATTTTTATAGAGATACCCTATTTGTCTATAAGACAATGATTTTTATAAATTACTAGAGTCAAGACTTGAAAAGGAACAGTAAAACAGTTACAAATAGGTTATTTGAACGGTAAAATTTGAAAAATAAATAGGAAACAAAAATAAAATTCGCCAATTTTATTGAGATAAAAACATATGATTCCTTTTGTAAGAAAAACATATGAATCCTTTCTATAAAAAAAAAAAAGCATATGAATCCTTAACCTTTTTCATGTTCAGGAGGAAAAAAAAAACAAATACTGTCGACCTTCACATTTTATTTAGGGTCTAATATTATATTGAGTTAGAATAAATCAGACTAAATCACTTTACATTTTAATTGTGTTGATCTTTCAATCCCTTATTATTGATCTTTCAATCCTCTTTCATTCTCATATTGTAGCAGAACAATAATGGTTGGTTAGGGGAAGATATTGACCAAAATCCAAGTAATCAACTTAACAATGGAAAAAACAAGAATGAAGATGATGGTGATGCCATTACAAGCGAAGAAGTAGATGGCGATGAAGATGATGATGCTAGTATGTCTTGGCCTGAGTTGTTTTCATTGCAGCTGAGAAAAATGAATGA

Protein sequence

>MS.gene073914.t1

MALNSSSNKVIAPIDNELLQQFLYNKIHNKPLPNHITILEYDLFGTAKNPWEIWEEFGTSYSYRGKDLYFFTTLKKKSATSSRVARTIGLGRWEGEDAGKNILSKDKNQILGMKKRFRFEKSDTSQDGGWILHEYSLHNSLISNPLANNYVLCRFRKNCTHLPVTKNIVAQDKPRKTVVPEPAAVTVPGKRKYIIYEEPRNESNGTGVNTKSQRKEKEKYVEWPKETIVLALEAPTKSQNNNGWLGEDIDQNPTEKNE