Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073916.t1 | XP_003590172.1 | 88.9 | 325 | 30 | 1 | 1 | 319 | 1 | 325 | 6.30E-162 | 580.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073916.t1 | Q84TE6 | 30.1 | 156 | 89 | 9 | 13 | 158 | 27 | 172 | 6.9e-08 | 59.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073916.t1 | G7I6N9 | 88.9 | 325 | 30 | 1 | 1 | 319 | 1 | 325 | 4.5e-162 | 580.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene073916.t1 | TF | NAC |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073916.t1 | MTR_1g045470 | 88.923 | 325 | 30 | 1 | 1 | 319 | 1 | 325 | 0.0 | 586 |
MS.gene073916.t1 | MTR_1g053575 | 54.648 | 355 | 91 | 11 | 1 | 318 | 1 | 322 | 5.44e-110 | 323 |
MS.gene073916.t1 | MTR_7g116460 | 62.051 | 195 | 62 | 1 | 1 | 183 | 1 | 195 | 5.03e-82 | 247 |
MS.gene073916.t1 | MTR_1g019820 | 43.779 | 217 | 108 | 7 | 95 | 305 | 2 | 210 | 6.97e-38 | 134 |
MS.gene073916.t1 | MTR_7g100990 | 33.548 | 155 | 84 | 6 | 13 | 157 | 19 | 164 | 8.18e-16 | 77.4 |
MS.gene073916.t1 | MTR_7g005280 | 33.333 | 144 | 84 | 4 | 13 | 154 | 23 | 156 | 1.40e-15 | 75.5 |
MS.gene073916.t1 | MTR_4g036030 | 31.788 | 151 | 94 | 6 | 13 | 160 | 15 | 159 | 2.09e-13 | 70.5 |
MS.gene073916.t1 | MTR_5g041940 | 32.026 | 153 | 87 | 6 | 13 | 157 | 11 | 154 | 4.52e-12 | 65.5 |
MS.gene073916.t1 | MTR_5g012080 | 33.557 | 149 | 90 | 7 | 13 | 157 | 15 | 158 | 1.31e-11 | 65.1 |
MS.gene073916.t1 | MTR_3g109340 | 26.486 | 185 | 120 | 6 | 13 | 188 | 30 | 207 | 2.27e-11 | 64.3 |
MS.gene073916.t1 | MTR_4g089135 | 31.111 | 180 | 88 | 8 | 13 | 163 | 23 | 195 | 2.75e-11 | 63.9 |
MS.gene073916.t1 | MTR_7g085220 | 31.250 | 160 | 88 | 7 | 13 | 157 | 16 | 168 | 8.08e-11 | 62.8 |
MS.gene073916.t1 | MTR_8g094580 | 34.667 | 150 | 80 | 6 | 13 | 154 | 15 | 154 | 8.14e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073916.t1 | AT5G13180 | 34.932 | 146 | 80 | 6 | 13 | 154 | 22 | 156 | 2.48e-14 | 72.0 |
MS.gene073916.t1 | AT5G62380 | 32.026 | 153 | 95 | 6 | 13 | 162 | 15 | 161 | 3.84e-14 | 72.8 |
MS.gene073916.t1 | AT5G62380 | 32.026 | 153 | 95 | 6 | 13 | 162 | 15 | 161 | 3.84e-14 | 72.8 |
MS.gene073916.t1 | AT2G24430 | 31.081 | 148 | 92 | 5 | 13 | 157 | 24 | 164 | 3.22e-13 | 69.7 |
MS.gene073916.t1 | AT2G24430 | 31.081 | 148 | 92 | 5 | 13 | 157 | 24 | 164 | 3.22e-13 | 69.7 |
MS.gene073916.t1 | AT3G10480 | 33.121 | 157 | 91 | 8 | 13 | 163 | 35 | 183 | 7.02e-13 | 69.3 |
MS.gene073916.t1 | AT5G08790 | 32.620 | 187 | 103 | 8 | 3 | 179 | 5 | 178 | 2.00e-12 | 67.0 |
MS.gene073916.t1 | AT3G10480 | 32.911 | 158 | 91 | 8 | 13 | 163 | 35 | 184 | 4.51e-12 | 67.0 |
MS.gene073916.t1 | AT5G63790 | 33.540 | 161 | 88 | 6 | 3 | 154 | 48 | 198 | 1.11e-11 | 65.1 |
MS.gene073916.t1 | AT5G63790 | 33.540 | 161 | 88 | 6 | 3 | 154 | 58 | 208 | 1.17e-11 | 65.1 |
MS.gene073916.t1 | AT1G69490 | 32.903 | 155 | 83 | 7 | 13 | 157 | 17 | 160 | 1.81e-11 | 63.9 |
MS.gene073916.t1 | AT5G66300 | 29.747 | 158 | 102 | 6 | 13 | 167 | 20 | 171 | 2.76e-11 | 63.5 |
MS.gene073916.t1 | AT3G17730 | 30.061 | 163 | 100 | 8 | 13 | 168 | 14 | 169 | 3.70e-11 | 62.8 |
Find 63 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTAGCAGATTTCTTCTTTA+AGG | 0.123640 | 1.1:+28533282 | None:intergenic |
CCTCAATTCTTCTTCCAATA+AGG | 0.222490 | 1.1:-28533494 | MS.gene073916:CDS |
TTCAAGAATGGTGATATTAT+TGG | 0.230700 | 1.1:+28533402 | None:intergenic |
CAAAGAATCCATGGGAGATT+TGG | 0.252767 | 1.1:-28533360 | MS.gene073916:CDS |
TCTGCATAGAACATAATTAT+TGG | 0.253885 | 1.1:+28532954 | None:intergenic |
TAAGTTGATTACTTGGATTT+TGG | 0.305325 | 1.1:+28531942 | None:intergenic |
GCACTATTGGACTTGGTAGA+TGG | 0.308744 | 1.1:-28533243 | MS.gene073916:CDS |
CCAGGAACGATTGTCATTCT+TGG | 0.309932 | 1.1:+28532874 | None:intergenic |
TCAAGAATGGTGATATTATT+GGG | 0.331273 | 1.1:+28533403 | None:intergenic |
TGGGAGATTTGGGAAGAGTT+TGG | 0.336128 | 1.1:-28533349 | MS.gene073916:CDS |
GCAAGAACAAAGTTCTCTTT+TGG | 0.336878 | 1.1:+28532332 | None:intergenic |
TAAAACTGATTGGAAATCAT+TGG | 0.339556 | 1.1:+28531791 | None:intergenic |
CCATTGTTAAGTTGATTACT+TGG | 0.345697 | 1.1:+28531935 | None:intergenic |
AGTCGGTGCGATAACCTTAT+TGG | 0.366373 | 1.1:+28533480 | None:intergenic |
ATATGTAGCACTTACAGATT+TGG | 0.368326 | 1.1:+28532295 | None:intergenic |
AAAGAATCCATGGGAGATTT+GGG | 0.379921 | 1.1:-28533359 | MS.gene073916:CDS |
TCACGCGTAGTTCGCACTAT+TGG | 0.388612 | 1.1:-28533256 | MS.gene073916:CDS |
TATAGGAGTACAATAATGTT+TGG | 0.388726 | 1.1:-28531982 | MS.gene073916:intron |
GAGTACAATAATGTTTGGTT+GGG | 0.392823 | 1.1:-28531977 | MS.gene073916:CDS |
TTCTTTGATAAGCAATCCTT+TGG | 0.396079 | 1.1:-28533083 | MS.gene073916:intron |
CCAAGAATGACAATCGTTCC+TGG | 0.400269 | 1.1:-28532874 | MS.gene073916:CDS |
GGAGTACAATAATGTTTGGT+TGG | 0.416706 | 1.1:-28531978 | MS.gene073916:CDS |
TTAAGGTTGTAAAGAAGTAT+AGG | 0.426160 | 1.1:+28533299 | None:intergenic |
GCAAGATCCATCCACCATCT+TGG | 0.430936 | 1.1:+28533125 | None:intergenic |
CAAGATCCATCCACCATCTT+GGG | 0.431083 | 1.1:+28533126 | None:intergenic |
ATTCTTGAATACGATTTGTT+CGG | 0.433061 | 1.1:-28533388 | MS.gene073916:CDS |
TAAGTCCTTATAAAACTGAT+TGG | 0.443750 | 1.1:+28531781 | None:intergenic |
ACAGTGATTGCGGCAGGTCC+AGG | 0.448826 | 1.1:+28532856 | None:intergenic |
CTTATTGGAAGAAGAATTGA+GGG | 0.451784 | 1.1:+28533495 | None:intergenic |
CACTATTGGACTTGGTAGAT+GGG | 0.484248 | 1.1:-28533242 | MS.gene073916:CDS |
AATCTCCCATGGATTCTTTG+CGG | 0.489258 | 1.1:+28533363 | None:intergenic |
AGTACAATAATGTTTGGTTG+GGG | 0.510246 | 1.1:-28531976 | MS.gene073916:CDS |
CCTTATTGGAAGAAGAATTG+AGG | 0.526520 | 1.1:+28533494 | None:intergenic |
AACTCTTCCCAAATCTCCCA+TGG | 0.530624 | 1.1:+28533352 | None:intergenic |
GAACAAATCGTATTCAAGAA+TGG | 0.535727 | 1.1:+28533390 | None:intergenic |
TGAGACTTTGTATTAACCAC+AGG | 0.541279 | 1.1:+28532386 | None:intergenic |
TGTAGCACTTACAGATTTGG+TGG | 0.543882 | 1.1:+28532298 | None:intergenic |
TCGGCACCGCAAAGAATCCA+TGG | 0.544845 | 1.1:-28533369 | MS.gene073916:CDS |
ATGGTGATATTATTGGGCAA+AGG | 0.553419 | 1.1:+28533409 | None:intergenic |
GATTGCTTATCAAAGAATTG+TGG | 0.559456 | 1.1:+28533089 | None:intergenic |
AAGAGTGACACTTCCCAAGA+TGG | 0.562341 | 1.1:-28533139 | MS.gene073916:CDS |
TAATACAAAGTCTCAACGTA+AGG | 0.571382 | 1.1:-28532378 | MS.gene073916:CDS |
ACACTTCCCAAGATGGTGGA+TGG | 0.575047 | 1.1:-28533132 | MS.gene073916:CDS |
ATGATGATGCTAGTATGTCT+TGG | 0.583925 | 1.1:-28531880 | MS.gene073916:CDS |
TGCTTATCAAAGAATTGTGG+AGG | 0.589131 | 1.1:+28533092 | None:intergenic |
ACAAGTACAGTGATTGCGGC+AGG | 0.590813 | 1.1:+28532850 | None:intergenic |
CCAAGTAATCAACTTAACAA+TGG | 0.597996 | 1.1:-28531935 | MS.gene073916:CDS |
ATTGGACTTGGTAGATGGGA+AGG | 0.599219 | 1.1:-28533238 | MS.gene073916:CDS |
AGCTGCAACGAAAACAACTC+AGG | 0.602909 | 1.1:+28531857 | None:intergenic |
AAAGACAAGAACCAAATCCT+CGG | 0.605189 | 1.1:-28533187 | MS.gene073916:CDS |
GTAGTTCGCACTATTGGACT+TGG | 0.612695 | 1.1:-28533250 | MS.gene073916:CDS |
TGAAGGATGCTTGATCGAAG+AGG | 0.615586 | 1.1:-28531822 | MS.gene073916:CDS |
CAGCTGAGAGAGATGAATGA+AGG | 0.618301 | 1.1:-28531839 | MS.gene073916:CDS |
CGGCACCGCAAAGAATCCAT+GGG | 0.621679 | 1.1:-28533368 | MS.gene073916:CDS |
AGATGGGAAGGTGAAGACGC+TGG | 0.631377 | 1.1:-28533226 | MS.gene073916:CDS |
TGTAGAAGTTCATCATCAGT+CGG | 0.633932 | 1.1:+28533463 | None:intergenic |
AGTGACACTTCCCAAGATGG+TGG | 0.639769 | 1.1:-28533136 | MS.gene073916:CDS |
GTAGCACTTACAGATTTGGT+GGG | 0.644008 | 1.1:+28532299 | None:intergenic |
ACTTACAAGTACAGTGATTG+CGG | 0.645359 | 1.1:+28532846 | None:intergenic |
GGAGCTTCTCACTCATATCG+TGG | 0.649333 | 1.1:-28533328 | MS.gene073916:CDS |
GTACAATAATGTTTGGTTGG+GGG | 0.656762 | 1.1:-28531975 | MS.gene073916:CDS |
AAAAGAATCAAACTGTCCTG+TGG | 0.676178 | 1.1:-28532402 | MS.gene073916:CDS |
AAGTGTCACTCTTCTCAAAG+CGG | 0.691065 | 1.1:+28533149 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATTTCAAGAAGATAAAA+AGG | + | chr1.1:28532557-28532576 | None:intergenic | 15.0% |
!!! | ATAAAATCTAATCTTTTTAC+TGG | + | chr1.1:28532496-28532515 | None:intergenic | 15.0% |
!!! | ATACAATATAGATTTTTTCT+TGG | - | chr1.1:28532238-28532257 | MS.gene073916:intron | 15.0% |
!!! | TACAATATAGATTTTTTCTT+GGG | - | chr1.1:28532239-28532258 | MS.gene073916:intron | 15.0% |
!!! | TTTGATGAAAATTATTTCTT+TGG | - | chr1.1:28532631-28532650 | MS.gene073916:intron | 15.0% |
!! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1.1:28532898-28532917 | MS.gene073916:CDS | 20.0% |
!! | GAGTAGTAAATCATTAAAAT+AGG | + | chr1.1:28532707-28532726 | None:intergenic | 20.0% |
!! | GTATATTTGCAAAAAAACTA+GGG | + | chr1.1:28532222-28532241 | None:intergenic | 20.0% |
!! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1.1:28532893-28532912 | MS.gene073916:CDS | 20.0% |
!! | TGTATATTTGCAAAAAAACT+AGG | + | chr1.1:28532223-28532242 | None:intergenic | 20.0% |
!!! | CTTTTTCATTTGGATTTTTA+GGG | - | chr1.1:28532795-28532814 | MS.gene073916:intron | 20.0% |
!!! | TAACATTGTTCTTTTTCATT+TGG | - | chr1.1:28532785-28532804 | MS.gene073916:intron | 20.0% |
!!! | TCTTTTTCATTTGGATTTTT+AGG | - | chr1.1:28532794-28532813 | MS.gene073916:intron | 20.0% |
!!! | TGTTATGAATTTTATTGTAG+AGG | + | chr1.1:28531822-28531841 | None:intergenic | 20.0% |
!!! | TTATGATTTGATTTTGTATC+TGG | - | chr1.1:28532265-28532284 | MS.gene073916:intron | 20.0% |
! | AAAAACAAGATTGAAGTAGA+TGG | - | chr1.1:28533342-28533361 | MS.gene073916:CDS | 25.0% |
! | AATCACATGCTTAATTGATT+AGG | + | chr1.1:28532592-28532611 | None:intergenic | 25.0% |
! | CTCTTTCATTCTCATATTAT+AGG | - | chr1.1:28533254-28533273 | MS.gene073916:CDS | 25.0% |
! | TAAAACTGATTGGAAATCAT+TGG | + | chr1.1:28533465-28533484 | None:intergenic | 25.0% |
! | TAAGTCCTTATAAAACTGAT+TGG | + | chr1.1:28533475-28533494 | None:intergenic | 25.0% |
! | TCAAGAATGGTGATATTATT+GGG | + | chr1.1:28531853-28531872 | None:intergenic | 25.0% |
! | TCTGCATAGAACATAATTAT+TGG | + | chr1.1:28532302-28532321 | None:intergenic | 25.0% |
! | TTCAAGAATGGTGATATTAT+TGG | + | chr1.1:28531854-28531873 | None:intergenic | 25.0% |
!! | AATGAAAGAGCACAATAATA+AGG | + | chr1.1:28533244-28533263 | None:intergenic | 25.0% |
!! | ATTCTTGAATACGATTTGTT+CGG | - | chr1.1:28531865-28531884 | MS.gene073916:CDS | 25.0% |
!! | GTTTTATAAGGACTTATTGT+TGG | - | chr1.1:28533479-28533498 | MS.gene073916:CDS | 25.0% |
!! | TATAGGAGTACAATAATGTT+TGG | - | chr1.1:28533271-28533290 | MS.gene073916:CDS | 25.0% |
!! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1.1:28531957-28531976 | None:intergenic | 25.0% |
!!! | GATTTCCAATCAGTTTTATA+AGG | - | chr1.1:28533467-28533486 | MS.gene073916:CDS | 25.0% |
!!! | TAAGTTGATTACTTGGATTT+TGG | + | chr1.1:28533314-28533333 | None:intergenic | 25.0% |
AGTACAATAATGTTTGGTTG+GGG | - | chr1.1:28533277-28533296 | MS.gene073916:CDS | 30.0% | |
AGTAGCAGATTTCTTCTTTA+AGG | + | chr1.1:28531974-28531993 | None:intergenic | 30.0% | |
ATATGTAGCACTTACAGATT+TGG | + | chr1.1:28532961-28532980 | None:intergenic | 30.0% | |
CCAAGTAATCAACTTAACAA+TGG | - | chr1.1:28533318-28533337 | MS.gene073916:CDS | 30.0% | |
CTTATTGGAAGAAGAATTGA+GGG | + | chr1.1:28531761-28531780 | None:intergenic | 30.0% | |
GAACAAATCGTATTCAAGAA+TGG | + | chr1.1:28531866-28531885 | None:intergenic | 30.0% | |
GAGTACAATAATGTTTGGTT+GGG | - | chr1.1:28533276-28533295 | MS.gene073916:CDS | 30.0% | |
GATTGCTTATCAAAGAATTG+TGG | + | chr1.1:28532167-28532186 | None:intergenic | 30.0% | |
TAATACAAAGTCTCAACGTA+AGG | - | chr1.1:28532875-28532894 | MS.gene073916:CDS | 30.0% | |
TTCTTTGATAAGCAATCCTT+TGG | - | chr1.1:28532170-28532189 | MS.gene073916:intron | 30.0% | |
!! | ATCTTCTTTCTAGCTTGTTT+AGG | - | chr1.1:28532514-28532533 | MS.gene073916:intron | 30.0% |
!! | CCATTGTTAAGTTGATTACT+TGG | + | chr1.1:28533321-28533340 | None:intergenic | 30.0% |
!! | GCAACAATATTTTTGCTTAC+AGG | + | chr1.1:28532349-28532368 | None:intergenic | 30.0% |
!! | TCTTCTTTCTAGCTTGTTTA+GGG | - | chr1.1:28532515-28532534 | MS.gene073916:intron | 30.0% |
AAAACTAGGGCTACAAATCT+TGG | + | chr1.1:28532209-28532228 | None:intergenic | 35.0% | |
AAAAGAATCAAACTGTCCTG+TGG | - | chr1.1:28532851-28532870 | MS.gene073916:intron | 35.0% | |
AAAGAATCCATGGGAGATTT+GGG | - | chr1.1:28531894-28531913 | MS.gene073916:CDS | 35.0% | |
AAAGACAAGAACCAAATCCT+CGG | - | chr1.1:28532066-28532085 | MS.gene073916:intron | 35.0% | |
ACTTACAAGTACAGTGATTG+CGG | + | chr1.1:28532410-28532429 | None:intergenic | 35.0% | |
ATGGTGATATTATTGGGCAA+AGG | + | chr1.1:28531847-28531866 | None:intergenic | 35.0% | |
CCTCAATTCTTCTTCCAATA+AGG | - | chr1.1:28531759-28531778 | MS.gene073916:CDS | 35.0% | |
CCTTATTGGAAGAAGAATTG+AGG | + | chr1.1:28531762-28531781 | None:intergenic | 35.0% | |
GGAGTACAATAATGTTTGGT+TGG | - | chr1.1:28533275-28533294 | MS.gene073916:CDS | 35.0% | |
GTACAATAATGTTTGGTTGG+GGG | - | chr1.1:28533278-28533297 | MS.gene073916:CDS | 35.0% | |
TGAGACTTTGTATTAACCAC+AGG | + | chr1.1:28532870-28532889 | None:intergenic | 35.0% | |
TGCTTATCAAAGAATTGTGG+AGG | + | chr1.1:28532164-28532183 | None:intergenic | 35.0% | |
TGTAGAAGTTCATCATCAGT+CGG | + | chr1.1:28531793-28531812 | None:intergenic | 35.0% | |
! | ATGATGATGCTAGTATGTCT+TGG | - | chr1.1:28533373-28533392 | MS.gene073916:CDS | 35.0% |
! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1.1:28532924-28532943 | None:intergenic | 35.0% |
! | GGACAGTTTGATTCTTTTGT+TGG | + | chr1.1:28532849-28532868 | None:intergenic | 35.0% |
!! | TTTTGTATCTGGTTTCTTGC+AGG | - | chr1.1:28532276-28532295 | MS.gene073916:intron | 35.0% |
AATCTCCCATGGATTCTTTG+CGG | + | chr1.1:28531893-28531912 | None:intergenic | 40.0% | |
CAAAGAATCCATGGGAGATT+TGG | - | chr1.1:28531893-28531912 | MS.gene073916:CDS | 40.0% | |
CCAAAGCATAACATTCTTGC+AGG | + | chr1.1:28532440-28532459 | None:intergenic | 40.0% | |
CCTGCAAGAATGTTATGCTT+TGG | - | chr1.1:28532437-28532456 | MS.gene073916:CDS | 40.0% | |
GCTACAAATCTTGGAACCTA+GGG | + | chr1.1:28532200-28532219 | None:intergenic | 40.0% | |
TGTAGCACTTACAGATTTGG+TGG | + | chr1.1:28532958-28532977 | None:intergenic | 40.0% | |
! | AAGTGTCACTCTTCTCAAAG+CGG | + | chr1.1:28532107-28532126 | None:intergenic | 40.0% |
! | CACTATTGGACTTGGTAGAT+GGG | - | chr1.1:28532011-28532030 | MS.gene073916:intron | 40.0% |
! | GTAGCACTTACAGATTTGGT+GGG | + | chr1.1:28532957-28532976 | None:intergenic | 40.0% |
!!! | GTTTTTTCATGCCGAGGATT+TGG | + | chr1.1:28532080-28532099 | None:intergenic | 40.0% |
AACTCTTCCCAAATCTCCCA+TGG | + | chr1.1:28531904-28531923 | None:intergenic | 45.0% | |
AAGAGTGACACTTCCCAAGA+TGG | - | chr1.1:28532114-28532133 | MS.gene073916:intron | 45.0% | |
AGCTGCAACGAAAACAACTC+AGG | + | chr1.1:28533399-28533418 | None:intergenic | 45.0% | |
AGTCGGTGCGATAACCTTAT+TGG | + | chr1.1:28531776-28531795 | None:intergenic | 45.0% | |
CAAGATCCATCCACCATCTT+GGG | + | chr1.1:28532130-28532149 | None:intergenic | 45.0% | |
CAGCTGAGAGAGATGAATGA+AGG | - | chr1.1:28533414-28533433 | MS.gene073916:CDS | 45.0% | |
CCAAGAATGACAATCGTTCC+TGG | - | chr1.1:28532379-28532398 | MS.gene073916:CDS | 45.0% | |
CCAGGAACGATTGTCATTCT+TGG | + | chr1.1:28532382-28532401 | None:intergenic | 45.0% | |
GGCTACAAATCTTGGAACCT+AGG | + | chr1.1:28532201-28532220 | None:intergenic | 45.0% | |
GTAGTTCGCACTATTGGACT+TGG | - | chr1.1:28532003-28532022 | MS.gene073916:intron | 45.0% | |
TGAAGGATGCTTGATCGAAG+AGG | - | chr1.1:28533431-28533450 | MS.gene073916:CDS | 45.0% | |
TGGGAGATTTGGGAAGAGTT+TGG | - | chr1.1:28531904-28531923 | MS.gene073916:CDS | 45.0% | |
! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1.1:28532015-28532034 | MS.gene073916:intron | 45.0% |
! | GCACTATTGGACTTGGTAGA+TGG | - | chr1.1:28532010-28532029 | MS.gene073916:intron | 45.0% |
!!! | GGAAACGTTTTTTCATGCCG+AGG | + | chr1.1:28532086-28532105 | None:intergenic | 45.0% |
ACAAGTACAGTGATTGCGGC+AGG | + | chr1.1:28532406-28532425 | None:intergenic | 50.0% | |
AGTGACACTTCCCAAGATGG+TGG | - | chr1.1:28532117-28532136 | MS.gene073916:intron | 50.0% | |
GCAAGATCCATCCACCATCT+TGG | + | chr1.1:28532131-28532150 | None:intergenic | 50.0% | |
GCAATCCTTTGGTAAGCCCT+AGG | - | chr1.1:28532181-28532200 | MS.gene073916:intron | 50.0% | |
GGAGCTTCTCACTCATATCG+TGG | - | chr1.1:28531925-28531944 | MS.gene073916:CDS | 50.0% | |
TCACGCGTAGTTCGCACTAT+TGG | - | chr1.1:28531997-28532016 | MS.gene073916:intron | 50.0% | |
TGGAACCTAGGGCTTACCAA+AGG | + | chr1.1:28532189-28532208 | None:intergenic | 50.0% | |
!! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1.1:28532121-28532140 | MS.gene073916:intron | 50.0% |
AGATGGGAAGGTGAAGACGC+TGG | - | chr1.1:28532027-28532046 | MS.gene073916:intron | 55.0% | |
CGGCACCGCAAAGAATCCAT+GGG | - | chr1.1:28531885-28531904 | MS.gene073916:CDS | 55.0% | |
TCGGCACCGCAAAGAATCCA+TGG | - | chr1.1:28531884-28531903 | MS.gene073916:CDS | 55.0% | |
ACAGTGATTGCGGCAGGTCC+AGG | + | chr1.1:28532400-28532419 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 28531754 | 28533521 | 28531754 | ID=MS.gene073916 |
chr1.1 | mRNA | 28531754 | 28533521 | 28531754 | ID=MS.gene073916.t1;Parent=MS.gene073916 |
chr1.1 | exon | 28533084 | 28533521 | 28533084 | ID=MS.gene073916.t1.exon1;Parent=MS.gene073916.t1 |
chr1.1 | CDS | 28533084 | 28533521 | 28533084 | ID=cds.MS.gene073916.t1;Parent=MS.gene073916.t1 |
chr1.1 | exon | 28532852 | 28532977 | 28532852 | ID=MS.gene073916.t1.exon2;Parent=MS.gene073916.t1 |
chr1.1 | CDS | 28532852 | 28532977 | 28532852 | ID=cds.MS.gene073916.t1;Parent=MS.gene073916.t1 |
chr1.1 | exon | 28532310 | 28532459 | 28532310 | ID=MS.gene073916.t1.exon3;Parent=MS.gene073916.t1 |
chr1.1 | CDS | 28532310 | 28532459 | 28532310 | ID=cds.MS.gene073916.t1;Parent=MS.gene073916.t1 |
chr1.1 | exon | 28531754 | 28531999 | 28531754 | ID=MS.gene073916.t1.exon4;Parent=MS.gene073916.t1 |
chr1.1 | CDS | 28531754 | 28531999 | 28531754 | ID=cds.MS.gene073916.t1;Parent=MS.gene073916.t1 |
Gene Sequence |
Protein sequence |