Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074022.t1 | XP_003613691.1 | 89.8 | 393 | 36 | 2 | 1 | 391 | 1 | 391 | 5.70E-163 | 583.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074022.t1 | Q93Z00 | 84.0 | 100 | 15 | 1 | 66 | 164 | 116 | 215 | 5.8e-39 | 163.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074022.t1 | G7KCJ2 | 89.8 | 393 | 36 | 2 | 1 | 391 | 1 | 391 | 4.1e-163 | 583.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene074022.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074022.t1 | MTR_5g039600 | 94.177 | 395 | 19 | 2 | 1 | 393 | 1 | 393 | 0.0 | 668 |
| MS.gene074022.t1 | MTR_4g108370 | 47.297 | 444 | 152 | 19 | 16 | 411 | 27 | 436 | 8.33e-92 | 284 |
| MS.gene074022.t1 | MTR_2g006150 | 65.101 | 149 | 36 | 5 | 21 | 167 | 91 | 225 | 1.83e-50 | 176 |
| MS.gene074022.t1 | MTR_2g006150 | 70.000 | 130 | 28 | 4 | 21 | 148 | 91 | 211 | 2.94e-50 | 177 |
| MS.gene074022.t1 | MTR_7g028160 | 59.677 | 124 | 33 | 3 | 55 | 178 | 38 | 144 | 1.93e-39 | 143 |
| MS.gene074022.t1 | MTR_1g114380 | 71.277 | 94 | 18 | 2 | 50 | 139 | 17 | 105 | 2.91e-38 | 139 |
| MS.gene074022.t1 | MTR_8g033070 | 79.221 | 77 | 16 | 0 | 63 | 139 | 76 | 152 | 7.18e-37 | 137 |
| MS.gene074022.t1 | MTR_1g038650 | 78.205 | 78 | 12 | 1 | 58 | 135 | 28 | 100 | 5.13e-36 | 132 |
| MS.gene074022.t1 | MTR_1g063870 | 79.412 | 68 | 14 | 0 | 62 | 129 | 44 | 111 | 1.75e-33 | 124 |
| MS.gene074022.t1 | MTR_1g101810 | 67.059 | 85 | 28 | 0 | 64 | 148 | 61 | 145 | 5.05e-33 | 127 |
| MS.gene074022.t1 | MTR_1g101810 | 67.059 | 85 | 28 | 0 | 64 | 148 | 91 | 175 | 1.04e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074022.t1 | AT1G69690 | 72.222 | 126 | 16 | 2 | 16 | 136 | 10 | 121 | 2.28e-51 | 176 |
| MS.gene074022.t1 | AT3G47620 | 41.618 | 346 | 112 | 13 | 58 | 353 | 108 | 413 | 2.25e-50 | 177 |
| MS.gene074022.t1 | AT1G58100 | 88.235 | 85 | 10 | 0 | 64 | 148 | 57 | 141 | 1.68e-46 | 165 |
| MS.gene074022.t1 | AT1G35560 | 88.372 | 86 | 9 | 1 | 63 | 148 | 52 | 136 | 2.23e-44 | 157 |
| MS.gene074022.t1 | AT2G45680 | 76.471 | 85 | 20 | 0 | 60 | 144 | 68 | 152 | 1.47e-38 | 142 |
| MS.gene074022.t1 | AT5G51910 | 74.699 | 83 | 21 | 0 | 57 | 139 | 47 | 129 | 1.56e-37 | 138 |
| MS.gene074022.t1 | AT5G51910 | 74.699 | 83 | 21 | 0 | 57 | 139 | 47 | 129 | 1.56e-37 | 138 |
| MS.gene074022.t1 | AT5G23280 | 74.390 | 82 | 16 | 1 | 58 | 139 | 35 | 111 | 1.04e-36 | 134 |
| MS.gene074022.t1 | AT3G27010 | 80.000 | 75 | 15 | 0 | 54 | 128 | 65 | 139 | 1.75e-35 | 133 |
| MS.gene074022.t1 | AT3G27010 | 80.000 | 75 | 15 | 0 | 54 | 128 | 65 | 139 | 1.75e-35 | 133 |
| MS.gene074022.t1 | AT5G08330 | 73.494 | 83 | 17 | 1 | 58 | 140 | 27 | 104 | 2.77e-35 | 130 |
| MS.gene074022.t1 | AT2G37000 | 77.419 | 62 | 14 | 0 | 65 | 126 | 41 | 102 | 1.05e-27 | 108 |
| MS.gene074022.t1 | AT5G41030 | 58.228 | 79 | 27 | 1 | 51 | 129 | 58 | 130 | 1.51e-26 | 107 |
| MS.gene074022.t1 | AT1G58100 | 62.353 | 85 | 8 | 1 | 64 | 148 | 57 | 117 | 7.65e-24 | 102 |
| MS.gene074022.t1 | AT3G45150 | 61.290 | 62 | 24 | 0 | 64 | 125 | 14 | 75 | 2.11e-21 | 90.9 |
Find 124 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTATTATCACAAAATA+TGG | 0.184669 | 5.1:-29813617 | MS.gene074022:CDS |
| TAAAAGCTGAAGAGGGAAAT+TGG | 0.195439 | 5.1:+29814353 | None:intergenic |
| ATTCCTTCTGTTGGAAATAA+TGG | 0.210892 | 5.1:-29813454 | MS.gene074022:CDS |
| CCTGAACCTAGTTGACTTCC+AGG | 0.283489 | 5.1:+29813355 | None:intergenic |
| GTAATGGAAATGATCCAATT+TGG | 0.290902 | 5.1:-29813480 | MS.gene074022:CDS |
| AGGCCGCCGGCATGCGGATC+CGG | 0.296288 | 5.1:+29814166 | None:intergenic |
| ACAGAAGGAATTGCCCAAAT+TGG | 0.300472 | 5.1:+29813466 | None:intergenic |
| CTTCAAATACGGCAGCGTTT+TGG | 0.303402 | 5.1:-29813546 | MS.gene074022:CDS |
| AGCAGTACAGCCATCATTTC+CGG | 0.303951 | 5.1:+29814275 | None:intergenic |
| CTTCCAGGCATAAGATTCAT+TGG | 0.326078 | 5.1:+29813370 | None:intergenic |
| GGTGCTCATCATCAAAATAA+TGG | 0.332278 | 5.1:-29814390 | MS.gene074022:CDS |
| GGCCGGAATTGTTCCTGTTC+CGG | 0.338886 | 5.1:+29814038 | None:intergenic |
| AACCAAGGTGTTAATGTTAA+TGG | 0.358090 | 5.1:-29813505 | MS.gene074022:CDS |
| GTTCCAGCTCACGCGTGAGC+TGG | 0.358435 | 5.1:-29814130 | MS.gene074022:CDS |
| GTCCGTCAACCTTCGTGTGC+CGG | 0.377510 | 5.1:+29814196 | None:intergenic |
| AAGCATACTCAGATTGCTTT+CGG | 0.377552 | 5.1:+29813294 | None:intergenic |
| GTCATCGCTGCGACCGGAAC+AGG | 0.396764 | 5.1:-29814051 | MS.gene074022:CDS |
| GATTGAGTGGCTGCTTCAAC+AGG | 0.397983 | 5.1:-29814085 | MS.gene074022:CDS |
| CAGCATCACGGCGGAGGTGG+AGG | 0.398279 | 5.1:-29813214 | MS.gene074022:CDS |
| GGAAATAATGGTTTATATAG+AGG | 0.402512 | 5.1:-29813442 | MS.gene074022:CDS |
| TACAAGCAAAACAAGAGCTT+CGG | 0.403614 | 5.1:-29813735 | MS.gene074022:CDS |
| TAATGGAAATGATCCAATTT+GGG | 0.409142 | 5.1:-29813479 | MS.gene074022:CDS |
| AGCTTAGAAACCGGGCTGAA+TGG | 0.413702 | 5.1:-29813900 | MS.gene074022:CDS |
| CACGGCGGAGGTGGAGGAGG+AGG | 0.417922 | 5.1:-29813208 | MS.gene074022:CDS |
| CTGGAACACTCTGGCGGCAC+AGG | 0.419048 | 5.1:+29814146 | None:intergenic |
| CATCACGGCGGAGGTGGAGG+AGG | 0.423459 | 5.1:-29813211 | MS.gene074022:CDS |
| TTTGGATGGTAACTGGTAAT+GGG | 0.423705 | 5.1:-29813528 | MS.gene074022:CDS |
| TTCAAGCCATGCTTCAAATA+CGG | 0.431597 | 5.1:-29813557 | MS.gene074022:CDS |
| GAAAACACCGCCACCGCCTC+TGG | 0.432301 | 5.1:-29813709 | MS.gene074022:CDS |
| AACATTGCTGATAAAGAAGA+AGG | 0.434505 | 5.1:+29813787 | None:intergenic |
| GACCGGAACAGGAACAATTC+CGG | 0.436306 | 5.1:-29814040 | MS.gene074022:CDS |
| AAAAGCTGAAGAGGGAAATT+GGG | 0.437875 | 5.1:+29814354 | None:intergenic |
| AAGCAATCTGAGTATGCTTT+CGG | 0.438504 | 5.1:-29813290 | MS.gene074022:CDS |
| GAGGGAAATTGGGTCTGCTT+CGG | 0.440519 | 5.1:+29814364 | None:intergenic |
| GCTTAGAAACCGGGCTGAAT+GGG | 0.442453 | 5.1:-29813899 | MS.gene074022:CDS |
| ATTTGGGCAATTCCTTCTGT+TGG | 0.444072 | 5.1:-29813463 | MS.gene074022:CDS |
| GGAGCTATGTCATCTCCTAA+TGG | 0.444498 | 5.1:-29813421 | MS.gene074022:CDS |
| GGCGGAGGATTTGAATTGTT+AGG | 0.445132 | 5.1:-29813685 | MS.gene074022:CDS |
| GGACAGCATCACGGCGGAGG+TGG | 0.447617 | 5.1:-29813217 | MS.gene074022:CDS |
| TCCTCCGCCACCAGAGGCGG+TGG | 0.448359 | 5.1:+29813699 | None:intergenic |
| GTCCCAGCTCACGCGTGAGC+TGG | 0.449479 | 5.1:+29814127 | None:intergenic |
| CGACAGCTCAGCTTAGAAAC+CGG | 0.451524 | 5.1:-29813909 | MS.gene074022:CDS |
| GTCGAAGCACGCTTCGGCGG+AGG | 0.452958 | 5.1:+29814225 | None:intergenic |
| GTTTGTCGAAATCTGCCTAT+AGG | 0.456835 | 5.1:+29813258 | None:intergenic |
| CCGGTCGCAGCGATGACGGC+TGG | 0.458247 | 5.1:+29814057 | None:intergenic |
| AATATATCTCTTAGAAGCTC+AGG | 0.459346 | 5.1:-29814000 | MS.gene074022:CDS |
| CCTGGAAGTCAACTAGGTTC+AGG | 0.459463 | 5.1:-29813355 | MS.gene074022:CDS |
| TATTTGTTACAATCAAATGT+AGG | 0.463489 | 5.1:-29813589 | MS.gene074022:CDS |
| ACCGCCACCGCCTCTGGTGG+CGG | 0.464821 | 5.1:-29813703 | MS.gene074022:CDS |
| ACAAGCAAAACAAGAGCTTC+GGG | 0.465254 | 5.1:-29813734 | MS.gene074022:CDS |
| ATCGTCGGCAGTGGAGGAGG+AGG | 0.467543 | 5.1:-29813331 | MS.gene074022:CDS |
| GTTAATGTTAATGGTGGTAA+TGG | 0.467651 | 5.1:-29813496 | MS.gene074022:CDS |
| TTCCAGCTCACGCGTGAGCT+GGG | 0.468128 | 5.1:-29814129 | MS.gene074022:CDS |
| GGTGGAGGAGGAGGAGATGA+TGG | 0.469014 | 5.1:-29813199 | MS.gene074022:CDS |
| GTCGGCAGTGGAGGAGGAGG+AGG | 0.469417 | 5.1:-29813328 | MS.gene074022:CDS |
| CACCATTAACATTAACACCT+TGG | 0.473185 | 5.1:+29813503 | None:intergenic |
| CTTATGCCTGGAAGTCAACT+AGG | 0.475042 | 5.1:-29813361 | MS.gene074022:CDS |
| GGTTGAACAAGGTTGTTCTT+CGG | 0.480944 | 5.1:+29814299 | None:intergenic |
| TCCGCCACCAGAGGCGGTGG+CGG | 0.481434 | 5.1:+29813702 | None:intergenic |
| GGCAGTGGAGGAGGAGGAGG+TGG | 0.486827 | 5.1:-29813325 | MS.gene074022:CDS |
| ACTCTGGCGGCACAGGCCGC+CGG | 0.488107 | 5.1:+29814153 | None:intergenic |
| AAACGGTATGTCAGATTCAT+CGG | 0.488724 | 5.1:-29813239 | MS.gene074022:CDS |
| TTGTAGCTGATGATTCTAGA+AGG | 0.490333 | 5.1:-29813837 | MS.gene074022:CDS |
| TCAGATTCAGATGGAAGCAT+AGG | 0.491711 | 5.1:-29813661 | MS.gene074022:CDS |
| TCTTTCGTCGAAGCACGCTT+CGG | 0.491715 | 5.1:+29814219 | None:intergenic |
| TTCATGAAATGAAATCCATT+AGG | 0.492064 | 5.1:+29813406 | None:intergenic |
| GGAATCGTCGGCAGTGGAGG+AGG | 0.498316 | 5.1:-29813334 | MS.gene074022:CDS |
| TGTTCCGGTCGCAGCGATGA+CGG | 0.498430 | 5.1:+29814053 | None:intergenic |
| TGTTCAACCACCGGAAATGA+TGG | 0.498630 | 5.1:-29814285 | MS.gene074022:CDS |
| GTTGTTCTTCGGAGACATCT+AGG | 0.503499 | 5.1:+29814310 | None:intergenic |
| ATTTGTTACAATCAAATGTA+GGG | 0.504618 | 5.1:-29813588 | MS.gene074022:CDS |
| CGGCACAGGCCGCCGGCATG+CGG | 0.505669 | 5.1:+29814160 | None:intergenic |
| GTATTTGAAGCATGGCTTGA+AGG | 0.510350 | 5.1:+29813559 | None:intergenic |
| AGGCCGCCGGATCCGCATGC+CGG | 0.515715 | 5.1:-29814172 | MS.gene074022:CDS |
| CCAGCCGTCATCGCTGCGAC+CGG | 0.516223 | 5.1:-29814057 | MS.gene074022:CDS |
| TATATTAAGTGAAGTGAAGT+TGG | 0.518840 | 5.1:+29814017 | None:intergenic |
| TTTCGGCTATGAATGCCTAT+AGG | 0.521533 | 5.1:-29813273 | MS.gene074022:CDS |
| CCGCCGGATCCGCATGCCGG+CGG | 0.521997 | 5.1:-29814169 | MS.gene074022:CDS |
| GTCGCGGAGGAGAACGAGCT+AGG | 0.522018 | 5.1:+29813928 | None:intergenic |
| GACCGGCACACGAAGGTTGA+CGG | 0.523997 | 5.1:-29814198 | MS.gene074022:CDS |
| GGTTCAGGAATCGTCGGCAG+TGG | 0.530991 | 5.1:-29813340 | MS.gene074022:CDS |
| GCCACCGCCTCTGGTGGCGG+AGG | 0.531020 | 5.1:-29813700 | MS.gene074022:CDS |
| AAACCATTATTTCCAACAGA+AGG | 0.534853 | 5.1:+29813451 | None:intergenic |
| TCTCCAATGAATCTTATGCC+TGG | 0.535265 | 5.1:-29813373 | MS.gene074022:CDS |
| GAATTATTATCACAAAATAT+GGG | 0.535940 | 5.1:-29813616 | MS.gene074022:CDS |
| TCGGGACAGCATCACGGCGG+AGG | 0.536859 | 5.1:-29813220 | MS.gene074022:CDS |
| AGCGTGCTTCGACGAAAGAC+CGG | 0.538504 | 5.1:-29814215 | MS.gene074022:CDS |
| TCATTTCCGGTGGTTGAACA+AGG | 0.546186 | 5.1:+29814288 | None:intergenic |
| AGCACGATCATGGAATTTGA+AGG | 0.546398 | 5.1:-29814411 | None:intergenic |
| CCGCCGGCATGCGGATCCGG+CGG | 0.547046 | 5.1:+29814169 | None:intergenic |
| CACACGAAGGTTGACGGACG+AGG | 0.549512 | 5.1:-29814192 | MS.gene074022:CDS |
| AACGGTATGTCAGATTCATC+GGG | 0.551825 | 5.1:-29813238 | MS.gene074022:CDS |
| AAATCCTCCGCCACCAGAGG+CGG | 0.555098 | 5.1:+29813696 | None:intergenic |
| TCAGGAATCGTCGGCAGTGG+AGG | 0.556738 | 5.1:-29813337 | MS.gene074022:CDS |
| TATAGGCAGATTTCGACAAA+CGG | 0.560561 | 5.1:-29813256 | MS.gene074022:CDS |
| TTAAGTGAAGTGAAGTTGGC+CGG | 0.564822 | 5.1:+29814021 | None:intergenic |
| GTTTCTAAGCTGAGCTGTCG+CGG | 0.568268 | 5.1:+29813912 | None:intergenic |
| TTCGTCGAAGCACGCTTCGG+CGG | 0.568824 | 5.1:+29814222 | None:intergenic |
| AGGTTGACGGACGAGGCCGC+CGG | 0.569788 | 5.1:-29814185 | MS.gene074022:CDS |
| CAACTAGGTTCAGGAATCGT+CGG | 0.570415 | 5.1:-29813346 | MS.gene074022:CDS |
| ACGCTGCCGTATTTGAAGCA+TGG | 0.572979 | 5.1:+29813551 | None:intergenic |
| TTGTTAGGTTCAGATTCAGA+TGG | 0.580560 | 5.1:-29813670 | MS.gene074022:CDS |
| ACGCGTGAGCTGGAACACTC+TGG | 0.580832 | 5.1:+29814137 | None:intergenic |
| GACAGCTCAGCTTAGAAACC+GGG | 0.582804 | 5.1:-29813908 | MS.gene074022:CDS |
| CAGATTCAGATGGAAGCATA+GGG | 0.583229 | 5.1:-29813660 | MS.gene074022:CDS |
| TAGTTCTGTCCCATTCAGCC+CGG | 0.583900 | 5.1:+29813890 | None:intergenic |
| TCAAGCAGTCAACATTCCTA+AGG | 0.586300 | 5.1:-29813169 | None:intergenic |
| GAGCTGGGACATAAATCAGA+TGG | 0.597190 | 5.1:-29814114 | MS.gene074022:CDS |
| GAACAACCTTGTTCAACCAC+CGG | 0.600339 | 5.1:-29814294 | MS.gene074022:CDS |
| CAAGGTGTTAATGTTAATGG+TGG | 0.607105 | 5.1:-29813502 | MS.gene074022:CDS |
| AACACCGCCACCGCCTCTGG+TGG | 0.607403 | 5.1:-29813706 | MS.gene074022:CDS |
| ATAGTGAGACGGCGCAGACA+TGG | 0.611900 | 5.1:+29813972 | None:intergenic |
| GAGTAGTAACTCTACCATGT+TGG | 0.612610 | 5.1:-29813815 | MS.gene074022:CDS |
| TTCAAATCCTCCGCCACCAG+AGG | 0.616815 | 5.1:+29813693 | None:intergenic |
| TCGCGGAGGAGAACGAGCTA+GGG | 0.623473 | 5.1:+29813929 | None:intergenic |
| CAGATGGCGAGACGATTGAG+TGG | 0.645098 | 5.1:-29814098 | MS.gene074022:CDS |
| GATTCATCGGGACAGCATCA+CGG | 0.649257 | 5.1:-29813226 | MS.gene074022:CDS |
| AGTACAGCCATCATTTCCGG+TGG | 0.655208 | 5.1:+29814278 | None:intergenic |
| GTAACTGGTAATGGGAACCA+AGG | 0.670023 | 5.1:-29813520 | MS.gene074022:CDS |
| TTACCTCGAAAATAGTGAGA+CGG | 0.686470 | 5.1:+29813961 | None:intergenic |
| GACGAAAGACCGGCACACGA+AGG | 0.698145 | 5.1:-29814205 | MS.gene074022:CDS |
| TCTAAGCTGAGCTGTCGCGG+AGG | 0.700117 | 5.1:+29813915 | None:intergenic |
| CGTGAGCTGGAACACTCTGG+CGG | 0.708891 | 5.1:+29814140 | None:intergenic |
| TCATCGGGACAGCATCACGG+CGG | 0.798879 | 5.1:-29813223 | MS.gene074022:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATTATTATCACAAAATA+TGG | - | chr5.1:29813956-29813975 | MS.gene074022:CDS | 15.0% |
| !! | GAATTATTATCACAAAATAT+GGG | - | chr5.1:29813957-29813976 | MS.gene074022:CDS | 15.0% |
| !!! | ATTTGTTACAATCAAATGTA+GGG | - | chr5.1:29813985-29814004 | MS.gene074022:CDS | 20.0% |
| !!! | TATTTGTTACAATCAAATGT+AGG | - | chr5.1:29813984-29814003 | MS.gene074022:CDS | 20.0% |
| ! | GGAAATAATGGTTTATATAG+AGG | - | chr5.1:29814131-29814150 | MS.gene074022:CDS | 25.0% |
| ! | TAATGGAAATGATCCAATTT+GGG | - | chr5.1:29814094-29814113 | MS.gene074022:CDS | 25.0% |
| ! | TATATTAAGTGAAGTGAAGT+TGG | + | chr5.1:29813559-29813578 | None:intergenic | 25.0% |
| ! | TTCATGAAATGAAATCCATT+AGG | + | chr5.1:29814170-29814189 | None:intergenic | 25.0% |
| AAACCATTATTTCCAACAGA+AGG | + | chr5.1:29814125-29814144 | None:intergenic | 30.0% | |
| AACATTGCTGATAAAGAAGA+AGG | + | chr5.1:29813789-29813808 | None:intergenic | 30.0% | |
| AATATATCTCTTAGAAGCTC+AGG | - | chr5.1:29813573-29813592 | MS.gene074022:CDS | 30.0% | |
| ATTCCTTCTGTTGGAAATAA+TGG | - | chr5.1:29814119-29814138 | MS.gene074022:CDS | 30.0% | |
| GTTAATGTTAATGGTGGTAA+TGG | - | chr5.1:29814077-29814096 | MS.gene074022:CDS | 30.0% | |
| ! | AACCAAGGTGTTAATGTTAA+TGG | - | chr5.1:29814068-29814087 | MS.gene074022:CDS | 30.0% |
| ! | GTAATGGAAATGATCCAATT+TGG | - | chr5.1:29814093-29814112 | MS.gene074022:CDS | 30.0% |
| !! | TTTTCTCTAAAAGCTGAAGA+GGG | + | chr5.1:29813230-29813249 | None:intergenic | 30.0% |
| !! | TTTTTCTCTAAAAGCTGAAG+AGG | + | chr5.1:29813231-29813250 | None:intergenic | 30.0% |
| AAAAGCTGAAGAGGGAAATT+GGG | + | chr5.1:29813222-29813241 | None:intergenic | 35.0% | |
| AAACGGTATGTCAGATTCAT+CGG | - | chr5.1:29814334-29814353 | MS.gene074022:CDS | 35.0% | |
| AAGCAATCTGAGTATGCTTT+CGG | - | chr5.1:29814283-29814302 | MS.gene074022:CDS | 35.0% | |
| AAGCATACTCAGATTGCTTT+CGG | + | chr5.1:29814282-29814301 | None:intergenic | 35.0% | |
| CACCATTAACATTAACACCT+TGG | + | chr5.1:29814073-29814092 | None:intergenic | 35.0% | |
| GGTGCTCATCATCAAAATAA+TGG | - | chr5.1:29813183-29813202 | MS.gene074022:CDS | 35.0% | |
| TAAAAGCTGAAGAGGGAAAT+TGG | + | chr5.1:29813223-29813242 | None:intergenic | 35.0% | |
| TACAAGCAAAACAAGAGCTT+CGG | - | chr5.1:29813838-29813857 | MS.gene074022:CDS | 35.0% | |
| TATAGGCAGATTTCGACAAA+CGG | - | chr5.1:29814317-29814336 | MS.gene074022:CDS | 35.0% | |
| TTACCTCGAAAATAGTGAGA+CGG | + | chr5.1:29813615-29813634 | None:intergenic | 35.0% | |
| TTCAAGCCATGCTTCAAATA+CGG | - | chr5.1:29814016-29814035 | MS.gene074022:CDS | 35.0% | |
| TTGTAGCTGATGATTCTAGA+AGG | - | chr5.1:29813736-29813755 | MS.gene074022:CDS | 35.0% | |
| TTGTTAGGTTCAGATTCAGA+TGG | - | chr5.1:29813903-29813922 | MS.gene074022:CDS | 35.0% | |
| TTTGGATGGTAACTGGTAAT+GGG | - | chr5.1:29814045-29814064 | MS.gene074022:CDS | 35.0% | |
| ! | AGAAGAAGGATTTTCCAACA+TGG | + | chr5.1:29813775-29813794 | None:intergenic | 35.0% |
| ! | CAAGGTGTTAATGTTAATGG+TGG | - | chr5.1:29814071-29814090 | MS.gene074022:CDS | 35.0% |
| ! | TTTTGGATGGTAACTGGTAA+TGG | - | chr5.1:29814044-29814063 | MS.gene074022:CDS | 35.0% |
| AACGGTATGTCAGATTCATC+GGG | - | chr5.1:29814335-29814354 | MS.gene074022:CDS | 40.0% | |
| ACAAGCAAAACAAGAGCTTC+GGG | - | chr5.1:29813839-29813858 | MS.gene074022:CDS | 40.0% | |
| ACAGAAGGAATTGCCCAAAT+TGG | + | chr5.1:29814110-29814129 | None:intergenic | 40.0% | |
| ATTTGGGCAATTCCTTCTGT+TGG | - | chr5.1:29814110-29814129 | MS.gene074022:CDS | 40.0% | |
| CTTCCAGGCATAAGATTCAT+TGG | + | chr5.1:29814206-29814225 | None:intergenic | 40.0% | |
| GAAGCATAGGGAGAAAAAGA+AGG | - | chr5.1:29813925-29813944 | MS.gene074022:CDS | 40.0% | |
| GAGTAGTAACTCTACCATGT+TGG | - | chr5.1:29813758-29813777 | MS.gene074022:CDS | 40.0% | |
| GGTTGAACAAGGTTGTTCTT+CGG | + | chr5.1:29813277-29813296 | None:intergenic | 40.0% | |
| GTTTGTCGAAATCTGCCTAT+AGG | + | chr5.1:29814318-29814337 | None:intergenic | 40.0% | |
| TCTCCAATGAATCTTATGCC+TGG | - | chr5.1:29814200-29814219 | MS.gene074022:CDS | 40.0% | |
| TTAAGTGAAGTGAAGTTGGC+CGG | + | chr5.1:29813555-29813574 | None:intergenic | 40.0% | |
| TTTCGGCTATGAATGCCTAT+AGG | - | chr5.1:29814300-29814319 | MS.gene074022:CDS | 40.0% | |
| ! | CAGATTCAGATGGAAGCATA+GGG | - | chr5.1:29813913-29813932 | MS.gene074022:CDS | 40.0% |
| ! | GTATTTGAAGCATGGCTTGA+AGG | + | chr5.1:29814017-29814036 | None:intergenic | 40.0% |
| ! | TCAGATTCAGATGGAAGCAT+AGG | - | chr5.1:29813912-29813931 | MS.gene074022:CDS | 40.0% |
| AGCAGTACAGCCATCATTTC+CGG | + | chr5.1:29813301-29813320 | None:intergenic | 45.0% | |
| CAACTAGGTTCAGGAATCGT+CGG | - | chr5.1:29814227-29814246 | MS.gene074022:CDS | 45.0% | |
| CTTATGCCTGGAAGTCAACT+AGG | - | chr5.1:29814212-29814231 | MS.gene074022:CDS | 45.0% | |
| GAACAACCTTGTTCAACCAC+CGG | - | chr5.1:29813279-29813298 | MS.gene074022:CDS | 45.0% | |
| GAGCTGGGACATAAATCAGA+TGG | - | chr5.1:29813459-29813478 | MS.gene074022:CDS | 45.0% | |
| GGAGCTATGTCATCTCCTAA+TGG | - | chr5.1:29814152-29814171 | MS.gene074022:CDS | 45.0% | |
| GGCGGAGGATTTGAATTGTT+AGG | - | chr5.1:29813888-29813907 | MS.gene074022:CDS | 45.0% | |
| GTTGTTCTTCGGAGACATCT+AGG | + | chr5.1:29813266-29813285 | None:intergenic | 45.0% | |
| TCATTTCCGGTGGTTGAACA+AGG | + | chr5.1:29813288-29813307 | None:intergenic | 45.0% | |
| TGTTCAACCACCGGAAATGA+TGG | - | chr5.1:29813288-29813307 | MS.gene074022:CDS | 45.0% | |
| ! | CTTCAAATACGGCAGCGTTT+TGG | - | chr5.1:29814027-29814046 | MS.gene074022:CDS | 45.0% |
| !! | AAATACGGCAGCGTTTTGGA+TGG | - | chr5.1:29814031-29814050 | MS.gene074022:CDS | 45.0% |
| !! | GTAACTGGTAATGGGAACCA+AGG | - | chr5.1:29814053-29814072 | MS.gene074022:CDS | 45.0% |
| AGCTTAGAAACCGGGCTGAA+TGG | - | chr5.1:29813673-29813692 | MS.gene074022:CDS | 50.0% | |
| AGTACAGCCATCATTTCCGG+TGG | + | chr5.1:29813298-29813317 | None:intergenic | 50.0% | |
| CCTGGAAGTCAACTAGGTTC+AGG | - | chr5.1:29814218-29814237 | MS.gene074022:CDS | 50.0% | |
| CGACAGCTCAGCTTAGAAAC+CGG | - | chr5.1:29813664-29813683 | MS.gene074022:CDS | 50.0% | |
| GACAGCTCAGCTTAGAAACC+GGG | - | chr5.1:29813665-29813684 | MS.gene074022:CDS | 50.0% | |
| GACCGGAACAGGAACAATTC+CGG | - | chr5.1:29813533-29813552 | MS.gene074022:CDS | 50.0% | |
| GAGGGAAATTGGGTCTGCTT+CGG | + | chr5.1:29813212-29813231 | None:intergenic | 50.0% | |
| GATTCATCGGGACAGCATCA+CGG | - | chr5.1:29814347-29814366 | MS.gene074022:CDS | 50.0% | |
| GATTGAGTGGCTGCTTCAAC+AGG | - | chr5.1:29813488-29813507 | MS.gene074022:CDS | 50.0% | |
| GCTTAGAAACCGGGCTGAAT+GGG | - | chr5.1:29813674-29813693 | MS.gene074022:CDS | 50.0% | |
| GTTTCTAAGCTGAGCTGTCG+CGG | + | chr5.1:29813664-29813683 | None:intergenic | 50.0% | |
| TCTTTCGTCGAAGCACGCTT+CGG | + | chr5.1:29813357-29813376 | None:intergenic | 50.0% | |
| ! | ACGCTGCCGTATTTGAAGCA+TGG | + | chr5.1:29814025-29814044 | None:intergenic | 50.0% |
| ! | CCTGAACCTAGTTGACTTCC+AGG | + | chr5.1:29814221-29814240 | None:intergenic | 50.0% |
| ! | TAGTTCTGTCCCATTCAGCC+CGG | + | chr5.1:29813686-29813705 | None:intergenic | 50.0% |
| !! | GCAGCGTTTTGGATGGTAAC+TGG | - | chr5.1:29814038-29814057 | MS.gene074022:CDS | 50.0% |
| AGCGTGCTTCGACGAAAGAC+CGG | - | chr5.1:29813358-29813377 | MS.gene074022:CDS | 55.0% | |
| ATAGTGAGACGGCGCAGACA+TGG | + | chr5.1:29813604-29813623 | None:intergenic | 55.0% | |
| CAGATGGCGAGACGATTGAG+TGG | - | chr5.1:29813475-29813494 | MS.gene074022:CDS | 55.0% | |
| GGCCGGAATTGTTCCTGTTC+CGG | + | chr5.1:29813538-29813557 | None:intergenic | 55.0% | |
| TTCAAATCCTCCGCCACCAG+AGG | + | chr5.1:29813883-29813902 | None:intergenic | 55.0% | |
| ! | GCGCCGTCTCACTATTTTCG+AGG | - | chr5.1:29813609-29813628 | MS.gene074022:CDS | 55.0% |
| AAATCCTCCGCCACCAGAGG+CGG | + | chr5.1:29813880-29813899 | None:intergenic | 60.0% | |
| ACGCGTGAGCTGGAACACTC+TGG | + | chr5.1:29813439-29813458 | None:intergenic | 60.0% | |
| CGTGAGCTGGAACACTCTGG+CGG | + | chr5.1:29813436-29813455 | None:intergenic | 60.0% | |
| GACCGGCACACGAAGGTTGA+CGG | - | chr5.1:29813375-29813394 | MS.gene074022:CDS | 60.0% | |
| GACGAAAGACCGGCACACGA+AGG | - | chr5.1:29813368-29813387 | MS.gene074022:CDS | 60.0% | |
| GGTGGAGGAGGAGGAGATGA+TGG | - | chr5.1:29814374-29814393 | MS.gene074022:CDS | 60.0% | |
| GGTTCAGGAATCGTCGGCAG+TGG | - | chr5.1:29814233-29814252 | MS.gene074022:CDS | 60.0% | |
| GTCCGTCAACCTTCGTGTGC+CGG | + | chr5.1:29813380-29813399 | None:intergenic | 60.0% | |
| TCAGGAATCGTCGGCAGTGG+AGG | - | chr5.1:29814236-29814255 | MS.gene074022:CDS | 60.0% | |
| TCATCGGGACAGCATCACGG+CGG | - | chr5.1:29814350-29814369 | MS.gene074022:CDS | 60.0% | |
| TCGCGGAGGAGAACGAGCTA+GGG | + | chr5.1:29813647-29813666 | None:intergenic | 60.0% | |
| TCTAAGCTGAGCTGTCGCGG+AGG | + | chr5.1:29813661-29813680 | None:intergenic | 60.0% | |
| TGTTCCGGTCGCAGCGATGA+CGG | + | chr5.1:29813523-29813542 | None:intergenic | 60.0% | |
| TTCCAGCTCACGCGTGAGCT+GGG | - | chr5.1:29813444-29813463 | MS.gene074022:CDS | 60.0% | |
| TTCGTCGAAGCACGCTTCGG+CGG | + | chr5.1:29813354-29813373 | None:intergenic | 60.0% | |
| ! | CACACGAAGGTTGACGGACG+AGG | - | chr5.1:29813381-29813400 | MS.gene074022:CDS | 60.0% |
| !! | TCGGCGGAGGCTTTTTCTGC+TGG | + | chr5.1:29813338-29813357 | None:intergenic | 60.0% |
| ATCGTCGGCAGTGGAGGAGG+AGG | - | chr5.1:29814242-29814261 | MS.gene074022:CDS | 65.0% | |
| CTGGAACACTCTGGCGGCAC+AGG | + | chr5.1:29813430-29813449 | None:intergenic | 65.0% | |
| GAAAACACCGCCACCGCCTC+TGG | - | chr5.1:29813864-29813883 | MS.gene074022:CDS | 65.0% | |
| GGAATCGTCGGCAGTGGAGG+AGG | - | chr5.1:29814239-29814258 | MS.gene074022:CDS | 65.0% | |
| GTCATCGCTGCGACCGGAAC+AGG | - | chr5.1:29813522-29813541 | MS.gene074022:CDS | 65.0% | |
| GTCGCGGAGGAGAACGAGCT+AGG | + | chr5.1:29813648-29813667 | None:intergenic | 65.0% | |
| GTTCCAGCTCACGCGTGAGC+TGG | - | chr5.1:29813443-29813462 | MS.gene074022:CDS | 65.0% | |
| AACACCGCCACCGCCTCTGG+TGG | - | chr5.1:29813867-29813886 | MS.gene074022:CDS | 70.0% | |
| CAGCATCACGGCGGAGGTGG+AGG | - | chr5.1:29814359-29814378 | MS.gene074022:CDS | 70.0% | |
| CATCACGGCGGAGGTGGAGG+AGG | - | chr5.1:29814362-29814381 | MS.gene074022:CDS | 70.0% | |
| CCAGCCGTCATCGCTGCGAC+CGG | - | chr5.1:29813516-29813535 | MS.gene074022:CDS | 70.0% | |
| GGACAGCATCACGGCGGAGG+TGG | - | chr5.1:29814356-29814375 | MS.gene074022:CDS | 70.0% | |
| GGCAGTGGAGGAGGAGGAGG+TGG | - | chr5.1:29814248-29814267 | MS.gene074022:CDS | 70.0% | |
| GTCCCAGCTCACGCGTGAGC+TGG | + | chr5.1:29813449-29813468 | None:intergenic | 70.0% | |
| GTCGAAGCACGCTTCGGCGG+AGG | + | chr5.1:29813351-29813370 | None:intergenic | 70.0% | |
| GTCGGCAGTGGAGGAGGAGG+AGG | - | chr5.1:29814245-29814264 | MS.gene074022:CDS | 70.0% | |
| TCGGGACAGCATCACGGCGG+AGG | - | chr5.1:29814353-29814372 | MS.gene074022:CDS | 70.0% | |
| ! | AGGTTGACGGACGAGGCCGC+CGG | - | chr5.1:29813388-29813407 | MS.gene074022:CDS | 70.0% |
| ACCGCCACCGCCTCTGGTGG+CGG | - | chr5.1:29813870-29813889 | MS.gene074022:CDS | 75.0% | |
| ACTCTGGCGGCACAGGCCGC+CGG | + | chr5.1:29813423-29813442 | None:intergenic | 75.0% | |
| AGGCCGCCGGATCCGCATGC+CGG | - | chr5.1:29813401-29813420 | MS.gene074022:CDS | 75.0% | |
| AGGCCGCCGGCATGCGGATC+CGG | + | chr5.1:29813410-29813429 | None:intergenic | 75.0% | |
| CACGGCGGAGGTGGAGGAGG+AGG | - | chr5.1:29814365-29814384 | MS.gene074022:CDS | 75.0% | |
| TCCGCCACCAGAGGCGGTGG+CGG | + | chr5.1:29813874-29813893 | None:intergenic | 75.0% | |
| TCCTCCGCCACCAGAGGCGG+TGG | + | chr5.1:29813877-29813896 | None:intergenic | 75.0% | |
| ! | CCGGTCGCAGCGATGACGGC+TGG | + | chr5.1:29813519-29813538 | None:intergenic | 75.0% |
| ! | CCGCCGGATCCGCATGCCGG+CGG | - | chr5.1:29813404-29813423 | MS.gene074022:CDS | 80.0% |
| ! | CCGCCGGCATGCGGATCCGG+CGG | + | chr5.1:29813407-29813426 | None:intergenic | 80.0% |
| ! | CGGCACAGGCCGCCGGCATG+CGG | + | chr5.1:29813416-29813435 | None:intergenic | 80.0% |
| !!! | GCCACCGCCTCTGGTGGCGG+AGG | - | chr5.1:29813873-29813892 | MS.gene074022:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 29813171 | 29814424 | 29813171 | ID=MS.gene074022 |
| chr5.1 | mRNA | 29813171 | 29814424 | 29813171 | ID=MS.gene074022.t1;Parent=MS.gene074022 |
| chr5.1 | exon | 29813171 | 29814424 | 29813171 | ID=MS.gene074022.t1.exon1;Parent=MS.gene074022.t1 |
| chr5.1 | CDS | 29813171 | 29814424 | 29813171 | ID=cds.MS.gene074022.t1;Parent=MS.gene074022.t1 |
| Gene Sequence |
| Protein sequence |
