AlfalfaGEDB | MS.gene074056

M. sativa cultivar XinJiangDaYe / MS.gene074056

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074056.t1	XP_003611353.1	91.2	137	12	0	2	138	558	694	4.20E-70	273.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074056.t1	Q25AG2	63.2	136	50	0	3	138	560	695	1.6e-49	196.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074056.t1	G7JXF4	91.2	137	12	0	2	138	558	694	3.0e-70	273.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074056.t1	MTR_5g013070	91.241	137	12	0	2	138	558	694	3.05e-88	273
MS.gene074056.t1	MTR_5g013130	90.511	137	13	0	2	138	555	691	4.74e-88	272
MS.gene074056.t1	MTR_4g114250	65.672	134	45	1	3	135	573	706	5.08e-60	197
MS.gene074056.t1	MTR_4g114270	64.925	134	46	1	3	135	571	704	5.11e-59	195
MS.gene074056.t1	MTR_2g068650	63.504	137	50	0	2	138	501	637	5.34e-59	194
MS.gene074056.t1	MTR_2g067990	64.234	137	49	0	2	138	763	899	1.69e-58	194
MS.gene074056.t1	MTR_2g067980	64.234	137	49	0	2	138	787	923	3.64e-58	194
MS.gene074056.t1	MTR_5g006160	63.309	139	50	1	1	138	536	674	4.71e-58	192
MS.gene074056.t1	MTR_8g011370	65.217	138	46	1	3	138	567	704	2.47e-57	190
MS.gene074056.t1	MTR_8g011410	64.493	138	47	1	3	138	569	706	3.41e-56	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074056.t1	AT1G34300	54.348	138	59	2	3	136	527	664	1.12e-46	161
MS.gene074056.t1	AT4G32300	51.095	137	63	1	3	135	536	672	8.11e-44	153
MS.gene074056.t1	AT5G24080	49.640	139	66	1	1	135	445	583	4.63e-43	150
MS.gene074056.t1	AT5G24080	49.640	139	66	1	1	135	445	583	4.63e-43	150
MS.gene074056.t1	AT5G24080	49.640	139	66	1	1	135	572	710	5.57e-43	150
MS.gene074056.t1	AT5G35370	51.471	136	64	1	2	135	558	693	8.39e-43	150
MS.gene074056.t1	AT2G19130	52.857	140	61	2	2	136	535	674	8.96e-42	147
MS.gene074056.t1	AT4G00340	51.825	137	62	2	3	136	505	640	3.26e-41	145
MS.gene074056.t1	AT4G00340	51.825	137	62	2	3	136	526	661	3.83e-41	145
MS.gene074056.t1	AT2G23950	51.163	129	63	0	2	130	343	471	4.51e-40	140

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Find 33 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGTTGGATTTGCTTTG+GGG	0.546510	6.1:+7597731	MS.gene074056:CDS
AAGGATATGTGGCTCCTGAA+TGG	0.528525	6.1:+7597932	MS.gene074056:CDS
ACCATGAGCAGAGGATCACA+AGG	0.631049	6.1:+7597913	MS.gene074056:CDS
ACGGTGAAGATTTCTGACTT+CGG	0.573424	6.1:+7597850	MS.gene074056:CDS
ACTCATAGATGAGTACTTCA+CGG	0.534339	6.1:+7597831	MS.gene074056:CDS
AGAACGAAAACCATGAGCAG+AGG	0.671259	6.1:+7597904	MS.gene074056:CDS
AGTCAAATATTAGCCGTCAC+AGG	0.547780	6.1:-7597967	None:intergenic
AGTCTTGCAAATATCTTGTT+CGG	0.450313	6.1:+7597685	MS.gene074056:CDS
ATGACTGAGTTGAGAGCTAT+TGG	0.348225	6.1:+7597571	MS.gene074056:CDS
CAAACCCATTTGGAATCAAA+GGG	0.519516	6.1:+7597714	MS.gene074056:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTCTTGCAAATATCTTGTT+CGG	+	chr6.1:7597685-7597704	MS.gene074056:CDS	30.0%
CTTTATGTCACAATGAATGA+TGG	-	chr6.1:7597800-7597819	None:intergenic	30.0%
TTGATTGGATATTGTGATGA+GGG	+	chr6.1:7597622-7597641	MS.gene074056:CDS	30.0%
ACTCATAGATGAGTACTTCA+CGG	+	chr6.1:7597831-7597850	MS.gene074056:CDS	35.0%
GGAATATTCTTGAACCATTC+AGG	-	chr6.1:7597949-7597968	None:intergenic	35.0%
GTATATGAGTTCATGAGCAA+TGG	+	chr6.1:7597661-7597680	MS.gene074056:CDS	35.0%
GTTCAAGAATATTCCTGTGA+CGG	+	chr6.1:7597954-7597973	MS.gene074056:CDS	35.0%
GTTGATTGGATATTGTGATG+AGG	+	chr6.1:7597621-7597640	MS.gene074056:CDS	35.0%
TAAAACCTGCCACAAAAACT+TGG	+	chr6.1:7597594-7597613	MS.gene074056:CDS	35.0%
ACGGTGAAGATTTCTGACTT+CGG	+	chr6.1:7597850-7597869	MS.gene074056:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	7597571	7597987	7597571	ID=MS.gene074056
chr6.1	mRNA	7597571	7597987	7597571	ID=MS.gene074056.t1;Parent=MS.gene074056
chr6.1	exon	7597571	7597987	7597571	ID=MS.gene074056.t1.exon1;Parent=MS.gene074056.t1
chr6.1	CDS	7597571	7597987	7597571	ID=cds.MS.gene074056.t1;Parent=MS.gene074056.t1

Gene Sequence

>MS.gene074056

ATGACTGAGTTGAGAGCTATTGGTAAAACCTGCCACAAAAACTTGGTCAAGTTGATTGGATATTGTGATGAGGGAATGCATAGAATGTTGGTATATGAGTTCATGAGCAATGGTAGTCTTGCAAATATCTTGTTCGGAGAAACCAAACCCATTTGGAATCAAAGGGTTGGATTTGCTTTGGGGATTGCAAGAGGGTTGGTGTATTTACATGAAGAGTGTGACACTCCCATCATTCATTGTGACATAAAGCCTCAAAATATACTCATAGATGAGTACTTCACGGTGAAGATTTCTGACTTCGGATTGGCTAAGTTGTTGTCGGCTGATCAAAGTAGAACGAAAACCATGAGCAGAGGATCACAAGGATATGTGGCTCCTGAATGGTTCAAGAATATTCCTGTGACGGCTAATATTTGA

Protein sequence

>MS.gene074056.t1

MTELRAIGKTCHKNLVKLIGYCDEGMHRMLVYEFMSNGSLANILFGETKPIWNQRVGFALGIARGLVYLHEECDTPIIHCDIKPQNILIDEYFTVKISDFGLAKLLSADQSRTKTMSRGSQGYVAPEWFKNIPVTANI