Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074160.t1 | XP_024641950.1 | 92.8 | 766 | 55 | 0 | 1 | 766 | 1 | 766 | 0.00E+00 | 1467.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074160.t1 | Q9SZL8 | 34.6 | 567 | 348 | 5 | 221 | 765 | 69 | 634 | 2.0e-98 | 361.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074160.t1 | A0A396HGW4 | 92.8 | 766 | 55 | 0 | 1 | 766 | 1 | 766 | 0.0e+00 | 1467.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene074160.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074160.t1 | MTR_6g051425 | 28.481 | 316 | 183 | 7 | 210 | 489 | 7 | 315 | 1.56e-34 | 135 |
MS.gene074160.t1 | MTR_0402s0040 | 44.526 | 137 | 72 | 3 | 219 | 353 | 20 | 154 | 3.60e-29 | 122 |
MS.gene074160.t1 | MTR_0402s0040 | 38.150 | 173 | 92 | 8 | 90 | 258 | 25 | 186 | 1.24e-21 | 99.8 |
MS.gene074160.t1 | MTR_5g015480 | 40.714 | 140 | 82 | 1 | 218 | 356 | 49 | 188 | 5.39e-28 | 114 |
MS.gene074160.t1 | MTR_5g015480 | 34.868 | 152 | 92 | 4 | 65 | 210 | 27 | 177 | 1.78e-18 | 86.3 |
MS.gene074160.t1 | MTR_2g070590 | 48.624 | 109 | 55 | 1 | 219 | 326 | 11 | 119 | 2.48e-27 | 107 |
MS.gene074160.t1 | MTR_2g070590 | 43.269 | 104 | 57 | 2 | 90 | 191 | 16 | 119 | 4.84e-19 | 84.0 |
MS.gene074160.t1 | MTR_6g017200 | 53.409 | 88 | 41 | 0 | 219 | 306 | 52 | 139 | 2.92e-26 | 105 |
MS.gene074160.t1 | MTR_6g017200 | 46.341 | 82 | 43 | 1 | 91 | 171 | 58 | 139 | 4.11e-17 | 79.7 |
MS.gene074160.t1 | MTR_1g057920 | 49.438 | 89 | 45 | 0 | 218 | 306 | 27 | 115 | 1.56e-24 | 99.8 |
MS.gene074160.t1 | MTR_1g057920 | 41.739 | 115 | 66 | 1 | 58 | 171 | 1 | 115 | 4.01e-19 | 84.3 |
MS.gene074160.t1 | MTR_7g061980 | 41.322 | 121 | 68 | 3 | 216 | 335 | 1 | 119 | 2.56e-21 | 90.5 |
MS.gene074160.t1 | MTR_7g061980 | 38.393 | 112 | 65 | 4 | 91 | 200 | 10 | 119 | 5.48e-15 | 72.4 |
MS.gene074160.t1 | MTR_2g098920 | 40.000 | 120 | 70 | 2 | 207 | 326 | 63 | 180 | 1.72e-20 | 92.4 |
MS.gene074160.t1 | MTR_2g098920 | 32.000 | 175 | 100 | 4 | 22 | 194 | 25 | 182 | 7.00e-17 | 81.6 |
MS.gene074160.t1 | MTR_4g035820 | 29.703 | 303 | 181 | 9 | 175 | 452 | 29 | 324 | 3.37e-20 | 95.9 |
MS.gene074160.t1 | MTR_4g035820 | 32.278 | 158 | 82 | 6 | 65 | 204 | 43 | 193 | 6.43e-13 | 72.8 |
MS.gene074160.t1 | MTR_4g067290 | 40.000 | 115 | 64 | 2 | 220 | 330 | 47 | 160 | 7.27e-20 | 89.7 |
MS.gene074160.t1 | MTR_4g067290 | 36.634 | 101 | 64 | 0 | 91 | 191 | 56 | 156 | 3.84e-15 | 76.3 |
MS.gene074160.t1 | MTR_4g067290 | 40.000 | 115 | 64 | 2 | 220 | 330 | 47 | 160 | 8.19e-20 | 89.7 |
MS.gene074160.t1 | MTR_4g067290 | 36.634 | 101 | 64 | 0 | 91 | 191 | 56 | 156 | 3.92e-15 | 75.9 |
MS.gene074160.t1 | MTR_4g067290 | 40.000 | 115 | 64 | 2 | 220 | 330 | 67 | 180 | 1.37e-19 | 89.7 |
MS.gene074160.t1 | MTR_4g067290 | 36.634 | 101 | 64 | 0 | 91 | 191 | 76 | 176 | 4.67e-15 | 76.3 |
MS.gene074160.t1 | MTR_4g067290 | 40.000 | 115 | 64 | 2 | 220 | 330 | 65 | 178 | 1.52e-19 | 89.4 |
MS.gene074160.t1 | MTR_4g067290 | 36.634 | 101 | 64 | 0 | 91 | 191 | 74 | 174 | 5.35e-15 | 75.9 |
MS.gene074160.t1 | MTR_4g067290 | 40.000 | 115 | 64 | 2 | 220 | 330 | 67 | 180 | 1.56e-19 | 89.4 |
MS.gene074160.t1 | MTR_4g067290 | 36.634 | 101 | 64 | 0 | 91 | 191 | 76 | 176 | 5.35e-15 | 76.3 |
MS.gene074160.t1 | MTR_4g067290 | 40.000 | 115 | 64 | 2 | 220 | 330 | 107 | 220 | 1.92e-19 | 90.1 |
MS.gene074160.t1 | MTR_4g067290 | 36.634 | 101 | 64 | 0 | 91 | 191 | 116 | 216 | 8.18e-15 | 76.3 |
MS.gene074160.t1 | MTR_7g113010 | 37.692 | 130 | 66 | 2 | 218 | 346 | 450 | 565 | 1.94e-18 | 90.1 |
MS.gene074160.t1 | MTR_7g113010 | 31.677 | 161 | 83 | 5 | 67 | 214 | 422 | 568 | 1.50e-12 | 71.2 |
MS.gene074160.t1 | MTR_5g039760 | 30.688 | 189 | 123 | 5 | 216 | 403 | 1 | 182 | 6.10e-18 | 83.2 |
MS.gene074160.t1 | MTR_5g039760 | 34.821 | 112 | 70 | 2 | 93 | 202 | 12 | 122 | 6.13e-11 | 62.8 |
MS.gene074160.t1 | MTR_0137s0040 | 50.704 | 71 | 31 | 1 | 212 | 278 | 19 | 89 | 6.53e-18 | 80.5 |
MS.gene074160.t1 | MTR_0137s0040 | 41.573 | 89 | 50 | 1 | 58 | 144 | 1 | 89 | 2.80e-13 | 67.4 |
MS.gene074160.t1 | MTR_0558s0020 | 26.172 | 256 | 150 | 6 | 231 | 448 | 42 | 296 | 2.08e-17 | 84.0 |
MS.gene074160.t1 | MTR_1g070355 | 25.974 | 231 | 143 | 7 | 231 | 438 | 80 | 305 | 4.77e-17 | 85.5 |
MS.gene074160.t1 | MTR_1g070355 | 28.959 | 221 | 122 | 8 | 44 | 249 | 22 | 222 | 4.41e-15 | 79.3 |
MS.gene074160.t1 | MTR_2g098880 | 34.351 | 131 | 84 | 1 | 225 | 353 | 73 | 203 | 2.84e-16 | 80.1 |
MS.gene074160.t1 | MTR_2g098880 | 25.123 | 203 | 137 | 4 | 25 | 222 | 15 | 207 | 4.82e-13 | 70.5 |
MS.gene074160.t1 | MTR_2g098880 | 34.351 | 131 | 84 | 1 | 225 | 353 | 61 | 191 | 2.87e-16 | 79.7 |
MS.gene074160.t1 | MTR_2g098880 | 25.654 | 191 | 127 | 4 | 37 | 222 | 15 | 195 | 5.35e-13 | 70.1 |
MS.gene074160.t1 | MTR_3g006370 | 39.815 | 108 | 64 | 1 | 225 | 331 | 50 | 157 | 4.17e-15 | 75.9 |
MS.gene074160.t1 | MTR_3g006370 | 30.667 | 150 | 100 | 4 | 71 | 216 | 30 | 179 | 1.22e-11 | 65.5 |
MS.gene074160.t1 | MTR_4g102720 | 44.048 | 84 | 46 | 1 | 222 | 305 | 4 | 86 | 1.62e-14 | 73.9 |
MS.gene074160.t1 | MTR_7g074790 | 37.121 | 132 | 62 | 4 | 216 | 346 | 1 | 112 | 9.62e-14 | 72.0 |
MS.gene074160.t1 | MTR_7g074790 | 30.120 | 166 | 81 | 7 | 91 | 251 | 10 | 145 | 4.21e-12 | 67.0 |
MS.gene074160.t1 | MTR_8g446020 | 28.402 | 169 | 102 | 3 | 290 | 439 | 79 | 247 | 1.26e-13 | 72.0 |
MS.gene074160.t1 | MTR_0291s0060 | 52.632 | 57 | 27 | 0 | 219 | 275 | 29 | 85 | 8.34e-13 | 65.1 |
MS.gene074160.t1 | MTR_1g086270 | 32.911 | 79 | 53 | 0 | 502 | 580 | 1 | 79 | 8.50e-13 | 65.9 |
MS.gene074160.t1 | MTR_6g090505 | 25.472 | 212 | 123 | 5 | 270 | 447 | 20 | 230 | 1.92e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074160.t1 | AT3G06250 | 31.492 | 724 | 414 | 11 | 83 | 764 | 20 | 703 | 7.70e-112 | 357 |
MS.gene074160.t1 | AT3G06250 | 31.492 | 724 | 414 | 11 | 83 | 764 | 20 | 703 | 7.70e-112 | 357 |
MS.gene074160.t1 | AT3G06250 | 31.492 | 724 | 414 | 11 | 83 | 764 | 20 | 703 | 7.70e-112 | 357 |
MS.gene074160.t1 | AT4G38180 | 35.739 | 568 | 340 | 7 | 221 | 765 | 69 | 634 | 1.08e-110 | 355 |
MS.gene074160.t1 | AT4G38180 | 34.932 | 146 | 84 | 3 | 89 | 230 | 71 | 209 | 1.91e-16 | 84.3 |
MS.gene074160.t1 | AT5G18960 | 31.557 | 732 | 400 | 12 | 89 | 764 | 41 | 727 | 1.74e-105 | 341 |
MS.gene074160.t1 | AT5G18960 | 31.557 | 732 | 400 | 12 | 89 | 764 | 41 | 727 | 1.74e-105 | 341 |
MS.gene074160.t1 | AT1G76320 | 30.909 | 550 | 361 | 5 | 229 | 765 | 1 | 544 | 3.06e-86 | 287 |
MS.gene074160.t1 | AT1G76320 | 33.051 | 118 | 74 | 3 | 95 | 211 | 1 | 114 | 5.99e-11 | 66.6 |
MS.gene074160.t1 | AT1G76320 | 30.909 | 550 | 361 | 5 | 229 | 765 | 1 | 544 | 4.66e-86 | 288 |
MS.gene074160.t1 | AT1G76320 | 33.051 | 118 | 74 | 3 | 95 | 211 | 1 | 114 | 8.53e-11 | 66.2 |
MS.gene074160.t1 | AT1G76320 | 30.909 | 550 | 361 | 5 | 229 | 765 | 1 | 544 | 5.22e-86 | 288 |
MS.gene074160.t1 | AT1G76320 | 33.051 | 118 | 74 | 3 | 95 | 211 | 1 | 114 | 9.39e-11 | 65.9 |
MS.gene074160.t1 | AT1G76320 | 30.909 | 550 | 361 | 5 | 229 | 765 | 1 | 544 | 5.22e-86 | 288 |
MS.gene074160.t1 | AT1G76320 | 33.051 | 118 | 74 | 3 | 95 | 211 | 1 | 114 | 9.39e-11 | 65.9 |
MS.gene074160.t1 | AT4G15090 | 29.682 | 566 | 374 | 4 | 221 | 765 | 47 | 609 | 1.23e-81 | 278 |
MS.gene074160.t1 | AT4G15090 | 29.682 | 566 | 374 | 4 | 221 | 765 | 47 | 609 | 1.23e-81 | 278 |
MS.gene074160.t1 | AT4G15090 | 29.682 | 566 | 374 | 4 | 221 | 765 | 47 | 609 | 1.23e-81 | 278 |
MS.gene074160.t1 | AT4G15090 | 29.682 | 566 | 374 | 4 | 221 | 765 | 47 | 609 | 1.23e-81 | 278 |
MS.gene074160.t1 | AT4G15090 | 29.682 | 566 | 374 | 4 | 221 | 765 | 47 | 609 | 1.23e-81 | 278 |
MS.gene074160.t1 | AT2G27110 | 30.728 | 563 | 354 | 8 | 213 | 765 | 43 | 579 | 1.20e-80 | 276 |
MS.gene074160.t1 | AT2G27110 | 30.728 | 563 | 354 | 8 | 213 | 765 | 43 | 579 | 1.20e-80 | 276 |
MS.gene074160.t1 | AT3G22170 | 28.450 | 587 | 379 | 7 | 211 | 765 | 41 | 618 | 2.20e-76 | 264 |
MS.gene074160.t1 | AT3G22170 | 28.450 | 587 | 379 | 7 | 211 | 765 | 41 | 618 | 2.20e-76 | 264 |
MS.gene074160.t1 | AT4G19990 | 29.550 | 555 | 355 | 6 | 228 | 765 | 24 | 559 | 8.31e-71 | 247 |
MS.gene074160.t1 | AT4G19990 | 29.550 | 555 | 355 | 6 | 228 | 765 | 24 | 559 | 1.16e-70 | 247 |
MS.gene074160.t1 | AT4G19990 | 29.550 | 555 | 355 | 6 | 228 | 765 | 24 | 559 | 1.16e-70 | 247 |
MS.gene074160.t1 | AT2G32250 | 27.933 | 537 | 362 | 5 | 228 | 764 | 41 | 552 | 1.20e-70 | 246 |
MS.gene074160.t1 | AT4G19990 | 29.550 | 555 | 355 | 6 | 228 | 765 | 24 | 559 | 1.21e-70 | 246 |
MS.gene074160.t1 | AT4G19990 | 29.550 | 555 | 355 | 6 | 228 | 765 | 24 | 559 | 1.21e-70 | 246 |
MS.gene074160.t1 | AT4G19990 | 29.550 | 555 | 355 | 6 | 228 | 765 | 38 | 573 | 1.29e-70 | 246 |
MS.gene074160.t1 | AT2G32250 | 27.933 | 537 | 362 | 5 | 228 | 764 | 41 | 552 | 1.57e-70 | 247 |
MS.gene074160.t1 | AT2G32250 | 27.933 | 537 | 362 | 5 | 228 | 764 | 41 | 552 | 1.57e-70 | 247 |
MS.gene074160.t1 | AT2G32250 | 27.933 | 537 | 362 | 5 | 228 | 764 | 41 | 552 | 1.92e-70 | 247 |
MS.gene074160.t1 | AT2G32250 | 27.933 | 537 | 362 | 5 | 228 | 764 | 41 | 552 | 1.92e-70 | 247 |
MS.gene074160.t1 | AT2G32250 | 27.933 | 537 | 362 | 5 | 228 | 764 | 41 | 552 | 1.92e-70 | 247 |
MS.gene074160.t1 | AT2G32250 | 27.799 | 536 | 362 | 5 | 229 | 764 | 1 | 511 | 7.61e-70 | 244 |
MS.gene074160.t1 | AT2G32250 | 27.799 | 536 | 362 | 5 | 229 | 764 | 1 | 511 | 7.67e-70 | 244 |
MS.gene074160.t1 | AT2G27110 | 34.301 | 379 | 244 | 3 | 389 | 765 | 59 | 434 | 2.02e-68 | 239 |
MS.gene074160.t1 | AT4G38170 | 30.789 | 393 | 266 | 3 | 376 | 766 | 12 | 400 | 6.16e-67 | 231 |
MS.gene074160.t1 | AT4G19990 | 28.709 | 519 | 334 | 6 | 264 | 765 | 3 | 502 | 2.66e-61 | 219 |
MS.gene074160.t1 | AT1G52520 | 27.592 | 569 | 365 | 13 | 225 | 763 | 85 | 636 | 2.29e-58 | 211 |
MS.gene074160.t1 | AT1G10240 | 27.951 | 576 | 372 | 14 | 218 | 762 | 41 | 604 | 3.40e-57 | 207 |
MS.gene074160.t1 | AT1G10240 | 32.877 | 146 | 90 | 4 | 70 | 207 | 25 | 170 | 2.65e-13 | 73.9 |
MS.gene074160.t1 | AT1G10240 | 27.951 | 576 | 372 | 14 | 218 | 762 | 41 | 604 | 3.40e-57 | 207 |
MS.gene074160.t1 | AT1G10240 | 32.877 | 146 | 90 | 4 | 70 | 207 | 25 | 170 | 2.65e-13 | 73.9 |
MS.gene074160.t1 | AT5G28530 | 27.521 | 585 | 356 | 17 | 225 | 764 | 55 | 616 | 8.09e-53 | 195 |
MS.gene074160.t1 | AT5G28530 | 27.521 | 585 | 356 | 17 | 225 | 764 | 55 | 616 | 8.09e-53 | 195 |
MS.gene074160.t1 | AT5G28530 | 27.210 | 577 | 372 | 14 | 225 | 764 | 55 | 620 | 2.49e-52 | 194 |
MS.gene074160.t1 | AT1G80010 | 26.027 | 584 | 372 | 14 | 225 | 765 | 95 | 661 | 1.15e-49 | 187 |
MS.gene074160.t1 | AT5G28530 | 26.071 | 560 | 335 | 20 | 224 | 764 | 54 | 553 | 2.88e-36 | 145 |
MS.gene074160.t1 | AT5G28530 | 25.725 | 552 | 351 | 17 | 224 | 764 | 54 | 557 | 9.19e-36 | 144 |
MS.gene074160.t1 | AT3G59470 | 40.517 | 116 | 67 | 2 | 214 | 329 | 60 | 173 | 1.99e-21 | 94.7 |
MS.gene074160.t1 | AT3G59470 | 36.923 | 130 | 80 | 1 | 63 | 192 | 44 | 171 | 4.47e-18 | 85.1 |
MS.gene074160.t1 | AT3G59470 | 40.517 | 116 | 67 | 2 | 214 | 329 | 60 | 173 | 1.99e-21 | 94.7 |
MS.gene074160.t1 | AT3G59470 | 36.923 | 130 | 80 | 1 | 63 | 192 | 44 | 171 | 4.47e-18 | 85.1 |
MS.gene074160.t1 | AT3G59470 | 40.517 | 116 | 67 | 2 | 214 | 329 | 72 | 185 | 2.84e-21 | 94.7 |
MS.gene074160.t1 | AT3G59470 | 31.522 | 184 | 118 | 4 | 10 | 192 | 7 | 183 | 3.44e-18 | 85.9 |
MS.gene074160.t1 | AT3G07500 | 44.340 | 106 | 59 | 0 | 225 | 330 | 33 | 138 | 7.51e-21 | 92.4 |
MS.gene074160.t1 | AT3G07500 | 40.310 | 129 | 70 | 3 | 65 | 192 | 13 | 135 | 1.27e-18 | 85.9 |
MS.gene074160.t1 | AT4G12850 | 32.000 | 125 | 80 | 2 | 225 | 347 | 11 | 132 | 4.08e-16 | 76.3 |
MS.gene074160.t1 | AT4G12850 | 36.634 | 101 | 62 | 1 | 91 | 191 | 11 | 109 | 4.16e-15 | 73.6 |
MS.gene074160.t1 | AT4G12850 | 37.374 | 99 | 60 | 1 | 91 | 189 | 11 | 107 | 9.11e-15 | 72.4 |
MS.gene074160.t1 | AT4G12850 | 34.314 | 102 | 64 | 1 | 225 | 326 | 11 | 109 | 3.46e-14 | 70.9 |
MS.gene074160.t1 | AT2G43280 | 36.937 | 111 | 63 | 2 | 225 | 331 | 22 | 129 | 1.44e-14 | 73.9 |
MS.gene074160.t1 | AT2G43280 | 31.579 | 133 | 87 | 3 | 77 | 205 | 8 | 140 | 4.90e-12 | 66.2 |
MS.gene074160.t1 | AT4G12850 | 36.634 | 101 | 62 | 1 | 91 | 191 | 11 | 109 | 1.62e-14 | 73.2 |
MS.gene074160.t1 | AT4G12850 | 34.314 | 102 | 64 | 1 | 225 | 326 | 11 | 109 | 9.73e-14 | 70.9 |
MS.gene074160.t1 | AT2G43280 | 36.458 | 96 | 54 | 2 | 240 | 331 | 2 | 94 | 3.69e-11 | 62.8 |
Find 134 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAAATAACAAACATATTT+TGG | 0.044098 | 6.1:+5749511 | MS.gene074160:CDS |
GACATGCTTCATATTCTTTC+TGG | 0.098501 | 6.1:-5750313 | None:intergenic |
TCGAATTCCATGCCAATATT+TGG | 0.165608 | 6.1:-5748556 | None:intergenic |
GTTTCCTGTTGAAATTTCTT+TGG | 0.213769 | 6.1:-5748742 | None:intergenic |
CGACCATTCGCTCCATTTCT+TGG | 0.214124 | 6.1:+5749618 | MS.gene074160:CDS |
CAAGAAGATTTACTTGCTTC+AGG | 0.245123 | 6.1:+5749088 | MS.gene074160:CDS |
TGGAATATCTCAAATATCTT+TGG | 0.250238 | 6.1:-5750293 | None:intergenic |
CTATTGCATCTTGATCTCTT+AGG | 0.250890 | 6.1:-5749767 | None:intergenic |
ATAGTTGACTACAGTGATTT+TGG | 0.276600 | 6.1:+5749549 | MS.gene074160:CDS |
CCGGCATATGCCAGCCCTAA+TGG | 0.285010 | 6.1:+5750229 | MS.gene074160:CDS |
TCAAATCCCATTCCCAGTTT+TGG | 0.288288 | 6.1:-5748958 | None:intergenic |
TGAGAAAAGATTATGTAAAT+AGG | 0.292229 | 6.1:+5749040 | MS.gene074160:CDS |
ATGTAATGATATCGCCCATT+AGG | 0.298549 | 6.1:-5750244 | None:intergenic |
TTGATTTGTTTGAGGTAGTA+TGG | 0.304417 | 6.1:-5749808 | None:intergenic |
AATACGAAATTGGTCTTCAT+TGG | 0.304948 | 6.1:-5748437 | None:intergenic |
GGATTTGTATGGTCTTTGTT+AGG | 0.306483 | 6.1:-5748721 | None:intergenic |
TGATCTCTTAGGATTGTCTT+TGG | 0.308246 | 6.1:-5749756 | None:intergenic |
TCAGTTGCTTGAGGGCATTT+TGG | 0.315988 | 6.1:-5749854 | None:intergenic |
GTCTATGGCAGGTGAATCTT+CGG | 0.322499 | 6.1:-5748687 | None:intergenic |
TATGTTTGTTATTTGATTCT+CGG | 0.323226 | 6.1:-5749505 | None:intergenic |
CCATCTCTTTAAGATGTACT+TGG | 0.327682 | 6.1:-5750543 | None:intergenic |
TCAAATATCTTTGGTGTGTA+TGG | 0.331453 | 6.1:-5750284 | None:intergenic |
CTTCCATTTCTCAAGCATCT+TGG | 0.339707 | 6.1:+5750152 | MS.gene074160:CDS |
ATATATGTGGCGCCAAATAT+TGG | 0.340354 | 6.1:+5748544 | MS.gene074160:CDS |
ATCAACAAAAGTAGGATAGA+TGG | 0.360653 | 6.1:+5748652 | MS.gene074160:CDS |
TGCTAGCGTCAATACGAAAT+TGG | 0.360891 | 6.1:-5748447 | None:intergenic |
CGGCATATGCCAGCCCTAAT+GGG | 0.368995 | 6.1:+5750230 | MS.gene074160:CDS |
TTCCATTTCTCAAGCATCTT+GGG | 0.371604 | 6.1:+5750153 | MS.gene074160:CDS |
GTCTTCATTGGAAGTATTTG+AGG | 0.393019 | 6.1:-5748425 | None:intergenic |
GAGCTCCTGAGTCATTCTTT+AGG | 0.395924 | 6.1:-5750130 | None:intergenic |
TGTAATGATATCGCCCATTA+GGG | 0.398727 | 6.1:-5750243 | None:intergenic |
TCTTAGGATTGTCTTTGGCT+TGG | 0.402156 | 6.1:-5749751 | None:intergenic |
TTCCCAAGATGCTTGAGAAA+TGG | 0.402172 | 6.1:-5750155 | None:intergenic |
TAGGACGAAAACCTTGTCTA+TGG | 0.403464 | 6.1:-5748702 | None:intergenic |
CCTCGGAAGGATACTAGAAT+TGG | 0.404533 | 6.1:+5749156 | MS.gene074160:CDS |
CACTTTACTGTCTGCAGCAC+AGG | 0.414311 | 6.1:-5748317 | None:intergenic |
TGATTATTTATACCAAGAAA+TGG | 0.414880 | 6.1:-5749630 | None:intergenic |
GAAATTTCTTTGGATTTGTA+TGG | 0.414958 | 6.1:-5748732 | None:intergenic |
GTTGGATGGAGTACCAAAAC+TGG | 0.419523 | 6.1:+5748945 | MS.gene074160:CDS |
GAAAGGTTTCAGCATAAGAA+AGG | 0.423022 | 6.1:+5748624 | MS.gene074160:CDS |
GTGACACGAAACTTGCCATT+TGG | 0.430039 | 6.1:-5748805 | None:intergenic |
CAAATCATTTACAAAAGAAT+CGG | 0.433692 | 6.1:-5749895 | None:intergenic |
TCTGCAGCACAGGAATCCTT+CGG | 0.440191 | 6.1:-5748307 | None:intergenic |
TCCATCTGAGTAAGGCCAAC+AGG | 0.444164 | 6.1:-5748382 | None:intergenic |
CCATTAGGGCTGGCATATGC+CGG | 0.448770 | 6.1:-5750229 | None:intergenic |
CAAATCAACGAGTTTGTGTA+TGG | 0.453361 | 6.1:+5749823 | MS.gene074160:CDS |
CAAAATCCTCTTCTTCCTCA+TGG | 0.453789 | 6.1:-5749935 | None:intergenic |
CTGCAGCACAGGAATCCTTC+GGG | 0.455610 | 6.1:-5748306 | None:intergenic |
CAAACTCGTTGATTTGTTTG+AGG | 0.455627 | 6.1:-5749816 | None:intergenic |
AGGAAGAAGTCGAAAAGATT+AGG | 0.456460 | 6.1:+5749421 | MS.gene074160:CDS |
TCTCAAGCATCTTGGGAAGA+TGG | 0.458795 | 6.1:+5750160 | MS.gene074160:CDS |
TCTATGGCAGGTGAATCTTC+GGG | 0.473803 | 6.1:-5748686 | None:intergenic |
AAGAAGATTTACTTGCTTCA+GGG | 0.473859 | 6.1:+5749089 | MS.gene074160:CDS |
AGGATTTCATCAACAAAAGT+AGG | 0.483308 | 6.1:+5748644 | MS.gene074160:CDS |
TGGAGTACCAAAACTGGGAA+TGG | 0.484307 | 6.1:+5748951 | MS.gene074160:CDS |
TTTCGTATGCTATGGCCCAT+TGG | 0.485848 | 6.1:-5750037 | None:intergenic |
AGTCAAATGTGCCAAGCAAC+CGG | 0.486331 | 6.1:-5748770 | None:intergenic |
AAATCCAAAGAAATTTCAAC+AGG | 0.487037 | 6.1:+5748738 | MS.gene074160:CDS |
ACTATTTCTCGTCAGCCAAA+TGG | 0.488160 | 6.1:+5748790 | MS.gene074160:CDS |
CATATGAGTCAGTTGCTTGA+GGG | 0.489438 | 6.1:-5749862 | None:intergenic |
AACAAGTATGCTATTATGAA+AGG | 0.494730 | 6.1:+5748607 | MS.gene074160:CDS |
TTTCAACAGGAAACAAGAAC+CGG | 0.495286 | 6.1:+5748751 | MS.gene074160:CDS |
GTAAATAGGAGTAAAGTTGA+TGG | 0.499362 | 6.1:+5749054 | MS.gene074160:CDS |
CTCTGCTATAGAGGTAGCAT+CGG | 0.505769 | 6.1:-5748491 | None:intergenic |
TCCTGTTGGCCTTACTCAGA+TGG | 0.506262 | 6.1:+5748381 | MS.gene074160:CDS |
CAATGATTTCCATCTGAGTA+AGG | 0.506463 | 6.1:-5748390 | None:intergenic |
GGAAACAAGAACCGGTTGCT+TGG | 0.507283 | 6.1:+5748759 | MS.gene074160:CDS |
TTGGGAAGATGGTGACTGAT+TGG | 0.508876 | 6.1:+5750171 | MS.gene074160:CDS |
AGTTGATATTCACAATTCAC+AGG | 0.511219 | 6.1:-5749369 | None:intergenic |
TATTGGCATGGAATTCGAAT+CGG | 0.511843 | 6.1:+5748561 | MS.gene074160:CDS |
ATACGAAAGCAGAGACCAAT+GGG | 0.513423 | 6.1:+5750022 | MS.gene074160:CDS |
AGTAACGGTCTCTGCTATAG+AGG | 0.516564 | 6.1:-5748500 | None:intergenic |
TTATAATGCATATGCTGCAC+AGG | 0.516697 | 6.1:+5749005 | MS.gene074160:CDS |
CTCTTTAAGATGTACTTGGA+TGG | 0.517740 | 6.1:-5750539 | None:intergenic |
AATATGTCTTTCGTATGCTA+TGG | 0.517789 | 6.1:-5750045 | None:intergenic |
ACGAAAACCTTGTCTATGGC+AGG | 0.521032 | 6.1:-5748698 | None:intergenic |
ATTTCTCTTGTGCGTTTGAA+AGG | 0.521186 | 6.1:-5749393 | None:intergenic |
TCTGCTATAGAGGTAGCATC+GGG | 0.521378 | 6.1:-5748490 | None:intergenic |
ATGATATCGCCCATTAGGGC+TGG | 0.523553 | 6.1:-5750239 | None:intergenic |
GAAGACAACATTGTCGATGA+AGG | 0.528118 | 6.1:+5749324 | MS.gene074160:CDS |
AAGAAATGGAGCGAATGGTC+GGG | 0.531117 | 6.1:-5749616 | None:intergenic |
GGAGTACCAAAACTGGGAAT+GGG | 0.534128 | 6.1:+5748952 | MS.gene074160:CDS |
TACTCCATCCAACGTGGACT+CGG | 0.535831 | 6.1:-5748935 | None:intergenic |
ATTATTTCTCGTCAGCCTGA+TGG | 0.539614 | 6.1:+5749195 | MS.gene074160:CDS |
TGCAAGCAAGCTTGCCATGT+CGG | 0.539631 | 6.1:-5750075 | None:intergenic |
TTCTTGATTATAGAAACATA+AGG | 0.540490 | 6.1:+5750510 | MS.gene074160:CDS |
GTTACATGATACCTGCCATC+AGG | 0.542599 | 6.1:-5749210 | None:intergenic |
ATAACCGAGTCCACGTTGGA+TGG | 0.544374 | 6.1:+5748931 | MS.gene074160:CDS |
CGAAAGTAACTGTATACTCT+CGG | 0.546541 | 6.1:-5750409 | None:intergenic |
CTCATTTGTTACATCAGTAA+CGG | 0.549751 | 6.1:-5748515 | None:intergenic |
ACATATGAGTCAGTTGCTTG+AGG | 0.550507 | 6.1:-5749863 | None:intergenic |
TTCTTGGTATAAATAATCAC+AGG | 0.552131 | 6.1:+5749634 | MS.gene074160:CDS |
CAAGAAATGGAGCGAATGGT+CGG | 0.552810 | 6.1:-5749617 | None:intergenic |
CCAAGTACATCTTAAAGAGA+TGG | 0.553963 | 6.1:+5750543 | MS.gene074160:CDS |
TTTCTCGTCAGCCTGATGGC+AGG | 0.555678 | 6.1:+5749199 | MS.gene074160:CDS |
CATGGACATGTATAATCTGT+GGG | 0.560503 | 6.1:+5749977 | MS.gene074160:CDS |
TAATGCATGGAGTACTCTCA+TGG | 0.560601 | 6.1:+5749959 | MS.gene074160:CDS |
AGTAGTGATTGATATGGGGC+AGG | 0.561170 | 6.1:+5748273 | None:intergenic |
AGTGCAAATGCTCATCCTGT+TGG | 0.564210 | 6.1:+5748367 | MS.gene074160:CDS |
TGTTGTAACACTTGTAAGCA+TGG | 0.566414 | 6.1:-5748588 | None:intergenic |
CTGTATGAAGTTTGAGTGTG+TGG | 0.567234 | 6.1:+5750460 | MS.gene074160:CDS |
AGCATGTCTAAATCTAGTGC+TGG | 0.569440 | 6.1:+5750328 | MS.gene074160:CDS |
AGATTTACTTGCTTCAGGGA+AGG | 0.575027 | 6.1:+5749093 | MS.gene074160:CDS |
TCATGGACATGTATAATCTG+TGG | 0.576180 | 6.1:+5749976 | MS.gene074160:CDS |
TATACGAAAGCAGAGACCAA+TGG | 0.578422 | 6.1:+5750021 | MS.gene074160:CDS |
ATACCAAGAAATGGAGCGAA+TGG | 0.589927 | 6.1:-5749621 | None:intergenic |
GGTGACTGATTGGCACTACA+AGG | 0.591637 | 6.1:+5750181 | MS.gene074160:CDS |
CTGGAGCATTGCAGTGAGAG+TGG | 0.592335 | 6.1:+5750347 | MS.gene074160:CDS |
AAGCACCTAAAGAATGACTC+AGG | 0.595811 | 6.1:+5750125 | MS.gene074160:CDS |
AAAACACAATCATGAGCTTG+TGG | 0.600248 | 6.1:+5749245 | MS.gene074160:CDS |
AAATGAGGAGGAAATATATG+TGG | 0.601435 | 6.1:+5748531 | MS.gene074160:CDS |
CTTTCAAAGCAAGAAATCAA+AGG | 0.603594 | 6.1:+5749449 | MS.gene074160:CDS |
AATGCATATGCTGCACAGGT+AGG | 0.605810 | 6.1:+5749009 | MS.gene074160:CDS |
TACTGATGTAACAAATGAGG+AGG | 0.606710 | 6.1:+5748519 | MS.gene074160:CDS |
CGTTACTGATGTAACAAATG+AGG | 0.607025 | 6.1:+5748516 | MS.gene074160:CDS |
AAGCTAATTATGATGCAAGC+CGG | 0.611824 | 6.1:+5750210 | MS.gene074160:CDS |
AGATTCACCTGCCATAGACA+AGG | 0.613560 | 6.1:+5748691 | MS.gene074160:CDS |
GGGAATGGGATTTGATTCAG+AGG | 0.618858 | 6.1:+5748966 | MS.gene074160:CDS |
TTTCGTATTGACGCTAGCAG+AGG | 0.623277 | 6.1:+5748451 | MS.gene074160:CDS |
GCAGAAAGAGAAACGAGATA+CGG | 0.628667 | 6.1:+5749122 | MS.gene074160:CDS |
TGTGGCGCCAAATATTGGCA+TGG | 0.636247 | 6.1:+5748549 | MS.gene074160:CDS |
ACGCACAAGAGAAATACAAG+AGG | 0.657506 | 6.1:+5749401 | MS.gene074160:CDS |
ATAATCTGTGGGAAAACGAA+TGG | 0.659852 | 6.1:+5749988 | MS.gene074160:CDS |
GGATGTAAAGAGACCTCGGA+AGG | 0.661833 | 6.1:+5749143 | MS.gene074160:CDS |
ATACGGATGTAAAGAGACCT+CGG | 0.664418 | 6.1:+5749139 | MS.gene074160:CDS |
TTGGATGGAGTACCAAAACT+GGG | 0.673013 | 6.1:+5748946 | MS.gene074160:CDS |
CCAATTCTAGTATCCTTCCG+AGG | 0.673855 | 6.1:-5749156 | None:intergenic |
ACTTCTATATGATGAATCTG+TGG | 0.676431 | 6.1:+5749680 | MS.gene074160:CDS |
GCAGGAGAATCAATGCCCGA+AGG | 0.685839 | 6.1:+5748291 | MS.gene074160:CDS |
GGCAGCATATGAGCATTACA+CGG | 0.686135 | 6.1:-5748865 | None:intergenic |
GTTGATATTCACAATTCACA+GGG | 0.703141 | 6.1:-5749368 | None:intergenic |
GAACATAACCGAGTCCACGT+TGG | 0.711103 | 6.1:+5748927 | MS.gene074160:CDS |
TGTATGAAGTTTGAGTGTGT+GGG | 0.717531 | 6.1:+5750461 | MS.gene074160:CDS |
CTGCTATAGAGGTAGCATCG+GGG | 0.739070 | 6.1:-5748489 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCAAATAACAAACATATTT+TGG | + | chr6.1:5749511-5749530 | MS.gene074160:CDS | 15.0% |
!!! | TCAAATAACAAACATATTTT+GGG | + | chr6.1:5749512-5749531 | MS.gene074160:CDS | 15.0% |
!! | CAAATCATTTACAAAAGAAT+CGG | - | chr6.1:5749898-5749917 | None:intergenic | 20.0% |
!! | TGAGAAAAGATTATGTAAAT+AGG | + | chr6.1:5749040-5749059 | MS.gene074160:CDS | 20.0% |
!! | TGATTATTTATACCAAGAAA+TGG | - | chr6.1:5749633-5749652 | None:intergenic | 20.0% |
!! | TTCTTGATTATAGAAACATA+AGG | + | chr6.1:5750510-5750529 | MS.gene074160:CDS | 20.0% |
!!! | AAATTCATTTTTTTCTGTGA+TGG | - | chr6.1:5748889-5748908 | None:intergenic | 20.0% |
!!! | TATGTTTGTTATTTGATTCT+CGG | - | chr6.1:5749508-5749527 | None:intergenic | 20.0% |
! | AAATCCAAAGAAATTTCAAC+AGG | + | chr6.1:5748738-5748757 | MS.gene074160:CDS | 25.0% |
! | AACAAGTATGCTATTATGAA+AGG | + | chr6.1:5748607-5748626 | MS.gene074160:CDS | 25.0% |
! | GAAATTTCTTTGGATTTGTA+TGG | - | chr6.1:5748735-5748754 | None:intergenic | 25.0% |
! | TGGAATATCTCAAATATCTT+TGG | - | chr6.1:5750296-5750315 | None:intergenic | 25.0% |
! | TTCTTGGTATAAATAATCAC+AGG | + | chr6.1:5749634-5749653 | MS.gene074160:CDS | 25.0% |
!! | AATCAAGAACTTTTAATGCA+TGG | - | chr6.1:5750499-5750518 | None:intergenic | 25.0% |
AAATGAGGAGGAAATATATG+TGG | + | chr6.1:5748531-5748550 | MS.gene074160:CDS | 30.0% | |
AAGAAGATTTACTTGCTTCA+GGG | + | chr6.1:5749089-5749108 | MS.gene074160:CDS | 30.0% | |
AATATGTCTTTCGTATGCTA+TGG | - | chr6.1:5750048-5750067 | None:intergenic | 30.0% | |
ACTTCTATATGATGAATCTG+TGG | + | chr6.1:5749680-5749699 | MS.gene074160:CDS | 30.0% | |
AGGATTTCATCAACAAAAGT+AGG | + | chr6.1:5748644-5748663 | MS.gene074160:CDS | 30.0% | |
ATCAACAAAAGTAGGATAGA+TGG | + | chr6.1:5748652-5748671 | MS.gene074160:CDS | 30.0% | |
CTTTCAAAGCAAGAAATCAA+AGG | + | chr6.1:5749449-5749468 | MS.gene074160:CDS | 30.0% | |
GTAAATAGGAGTAAAGTTGA+TGG | + | chr6.1:5749054-5749073 | MS.gene074160:CDS | 30.0% | |
GTTGATATTCACAATTCACA+GGG | - | chr6.1:5749371-5749390 | None:intergenic | 30.0% | |
GTTTCCTGTTGAAATTTCTT+TGG | - | chr6.1:5748745-5748764 | None:intergenic | 30.0% | |
! | AAGAGGATTTTGTTAATGCA+TGG | + | chr6.1:5749946-5749965 | MS.gene074160:CDS | 30.0% |
! | AATCTGTGGAATCTTTTAAG+TGG | + | chr6.1:5749694-5749713 | MS.gene074160:CDS | 30.0% |
! | AGTTGATATTCACAATTCAC+AGG | - | chr6.1:5749372-5749391 | None:intergenic | 30.0% |
! | ATAGTTGACTACAGTGATTT+TGG | + | chr6.1:5749549-5749568 | MS.gene074160:CDS | 30.0% |
! | CACAGGCAAATGATTATTTT+CGG | + | chr6.1:5749651-5749670 | MS.gene074160:CDS | 30.0% |
! | CTCATTTGTTACATCAGTAA+CGG | - | chr6.1:5748518-5748537 | None:intergenic | 30.0% |
! | TCAAATATCTTTGGTGTGTA+TGG | - | chr6.1:5750287-5750306 | None:intergenic | 30.0% |
!! | AATACGAAATTGGTCTTCAT+TGG | - | chr6.1:5748440-5748459 | None:intergenic | 30.0% |
!! | TTGATTTGTTTGAGGTAGTA+TGG | - | chr6.1:5749811-5749830 | None:intergenic | 30.0% |
AAAACACAATCATGAGCTTG+TGG | + | chr6.1:5749245-5749264 | MS.gene074160:CDS | 35.0% | |
AAGCTAATTATGATGCAAGC+CGG | + | chr6.1:5750210-5750229 | MS.gene074160:CDS | 35.0% | |
AGGAAGAAGTCGAAAAGATT+AGG | + | chr6.1:5749421-5749440 | MS.gene074160:CDS | 35.0% | |
ATAATCTGTGGGAAAACGAA+TGG | + | chr6.1:5749988-5750007 | MS.gene074160:CDS | 35.0% | |
ATATATGTGGCGCCAAATAT+TGG | + | chr6.1:5748544-5748563 | MS.gene074160:CDS | 35.0% | |
ATGTAATGATATCGCCCATT+AGG | - | chr6.1:5750247-5750266 | None:intergenic | 35.0% | |
ATTTCTCTTGTGCGTTTGAA+AGG | - | chr6.1:5749396-5749415 | None:intergenic | 35.0% | |
CAAATCAACGAGTTTGTGTA+TGG | + | chr6.1:5749823-5749842 | MS.gene074160:CDS | 35.0% | |
CAAGAAGATTTACTTGCTTC+AGG | + | chr6.1:5749088-5749107 | MS.gene074160:CDS | 35.0% | |
CAATGATTTCCATCTGAGTA+AGG | - | chr6.1:5748393-5748412 | None:intergenic | 35.0% | |
CATGGACATGTATAATCTGT+GGG | + | chr6.1:5749977-5749996 | MS.gene074160:CDS | 35.0% | |
CCAAGTACATCTTAAAGAGA+TGG | + | chr6.1:5750543-5750562 | MS.gene074160:CDS | 35.0% | |
CGAAAGTAACTGTATACTCT+CGG | - | chr6.1:5750412-5750431 | None:intergenic | 35.0% | |
CGTTACTGATGTAACAAATG+AGG | + | chr6.1:5748516-5748535 | MS.gene074160:CDS | 35.0% | |
CTATTGCATCTTGATCTCTT+AGG | - | chr6.1:5749770-5749789 | None:intergenic | 35.0% | |
GAAAGGTTTCAGCATAAGAA+AGG | + | chr6.1:5748624-5748643 | MS.gene074160:CDS | 35.0% | |
GACATGCTTCATATTCTTTC+TGG | - | chr6.1:5750316-5750335 | None:intergenic | 35.0% | |
GGATTTGTATGGTCTTTGTT+AGG | - | chr6.1:5748724-5748743 | None:intergenic | 35.0% | |
TACTGATGTAACAAATGAGG+AGG | + | chr6.1:5748519-5748538 | MS.gene074160:CDS | 35.0% | |
TATTGGCATGGAATTCGAAT+CGG | + | chr6.1:5748561-5748580 | MS.gene074160:CDS | 35.0% | |
TCATGGACATGTATAATCTG+TGG | + | chr6.1:5749976-5749995 | MS.gene074160:CDS | 35.0% | |
TCGAATTCCATGCCAATATT+TGG | - | chr6.1:5748559-5748578 | None:intergenic | 35.0% | |
TGATCTCTTAGGATTGTCTT+TGG | - | chr6.1:5749759-5749778 | None:intergenic | 35.0% | |
TGTAATGATATCGCCCATTA+GGG | - | chr6.1:5750246-5750265 | None:intergenic | 35.0% | |
TGTATGAAGTTTGAGTGTGT+GGG | + | chr6.1:5750461-5750480 | MS.gene074160:CDS | 35.0% | |
TGTTGTAACACTTGTAAGCA+TGG | - | chr6.1:5748591-5748610 | None:intergenic | 35.0% | |
TTATAATGCATATGCTGCAC+AGG | + | chr6.1:5749005-5749024 | MS.gene074160:CDS | 35.0% | |
TTCCATTTCTCAAGCATCTT+GGG | + | chr6.1:5750153-5750172 | MS.gene074160:CDS | 35.0% | |
TTTCAACAGGAAACAAGAAC+CGG | + | chr6.1:5748751-5748770 | MS.gene074160:CDS | 35.0% | |
! | TTTTAACCATGAGGAAGAAG+AGG | + | chr6.1:5749929-5749948 | MS.gene074160:CDS | 35.0% |
!! | CAAACTCGTTGATTTGTTTG+AGG | - | chr6.1:5749819-5749838 | None:intergenic | 35.0% |
!! | CCATCTCTTTAAGATGTACT+TGG | - | chr6.1:5750546-5750565 | None:intergenic | 35.0% |
!! | CTCTTTAAGATGTACTTGGA+TGG | - | chr6.1:5750542-5750561 | None:intergenic | 35.0% |
!! | GCTGTTTCATGTTTTTATCG+AGG | + | chr6.1:5749716-5749735 | MS.gene074160:CDS | 35.0% |
!! | GTCTTCATTGGAAGTATTTG+AGG | - | chr6.1:5748428-5748447 | None:intergenic | 35.0% |
!!! | ACATATTTTTTGTGCCGACA+TGG | + | chr6.1:5750061-5750080 | MS.gene074160:CDS | 35.0% |
AAGCACCTAAAGAATGACTC+AGG | + | chr6.1:5750125-5750144 | MS.gene074160:CDS | 40.0% | |
ACATATGAGTCAGTTGCTTG+AGG | - | chr6.1:5749866-5749885 | None:intergenic | 40.0% | |
ACGCACAAGAGAAATACAAG+AGG | + | chr6.1:5749401-5749420 | MS.gene074160:CDS | 40.0% | |
AGATTTACTTGCTTCAGGGA+AGG | + | chr6.1:5749093-5749112 | MS.gene074160:CDS | 40.0% | |
AGCATGTCTAAATCTAGTGC+TGG | + | chr6.1:5750328-5750347 | MS.gene074160:CDS | 40.0% | |
ATACCAAGAAATGGAGCGAA+TGG | - | chr6.1:5749624-5749643 | None:intergenic | 40.0% | |
ATACGAAAGCAGAGACCAAT+GGG | + | chr6.1:5750022-5750041 | MS.gene074160:CDS | 40.0% | |
ATACGGATGTAAAGAGACCT+CGG | + | chr6.1:5749139-5749158 | MS.gene074160:CDS | 40.0% | |
CAAAATCCTCTTCTTCCTCA+TGG | - | chr6.1:5749938-5749957 | None:intergenic | 40.0% | |
CATATGAGTCAGTTGCTTGA+GGG | - | chr6.1:5749865-5749884 | None:intergenic | 40.0% | |
CTGTATGAAGTTTGAGTGTG+TGG | + | chr6.1:5750460-5750479 | MS.gene074160:CDS | 40.0% | |
CTTCCATTTCTCAAGCATCT+TGG | + | chr6.1:5750152-5750171 | MS.gene074160:CDS | 40.0% | |
GAAGACAACATTGTCGATGA+AGG | + | chr6.1:5749324-5749343 | MS.gene074160:CDS | 40.0% | |
GCAGAAAGAGAAACGAGATA+CGG | + | chr6.1:5749122-5749141 | MS.gene074160:CDS | 40.0% | |
TAGGACGAAAACCTTGTCTA+TGG | - | chr6.1:5748705-5748724 | None:intergenic | 40.0% | |
TATACGAAAGCAGAGACCAA+TGG | + | chr6.1:5750021-5750040 | MS.gene074160:CDS | 40.0% | |
TCTTAGGATTGTCTTTGGCT+TGG | - | chr6.1:5749754-5749773 | None:intergenic | 40.0% | |
TGCTAGCGTCAATACGAAAT+TGG | - | chr6.1:5748450-5748469 | None:intergenic | 40.0% | |
TTCCCAAGATGCTTGAGAAA+TGG | - | chr6.1:5750158-5750177 | None:intergenic | 40.0% | |
! | ACTATTTCTCGTCAGCCAAA+TGG | + | chr6.1:5748790-5748809 | MS.gene074160:CDS | 40.0% |
! | ATTATTTCTCGTCAGCCTGA+TGG | + | chr6.1:5749195-5749214 | MS.gene074160:CDS | 40.0% |
! | CGATGAAGGTTTTCATGATC+TGG | + | chr6.1:5749338-5749357 | MS.gene074160:CDS | 40.0% |
! | GTTTTTATCGAGGCTATGTC+TGG | + | chr6.1:5749726-5749745 | MS.gene074160:CDS | 40.0% |
! | TAATGCATGGAGTACTCTCA+TGG | + | chr6.1:5749959-5749978 | MS.gene074160:CDS | 40.0% |
! | TCAAATCCCATTCCCAGTTT+TGG | - | chr6.1:5748961-5748980 | None:intergenic | 40.0% |
! | TTGGATGGAGTACCAAAACT+GGG | + | chr6.1:5748946-5748965 | MS.gene074160:CDS | 40.0% |
!!! | CAGCTGCTTTTTTAACCATG+AGG | + | chr6.1:5749920-5749939 | MS.gene074160:CDS | 40.0% |
AAGAAATGGAGCGAATGGTC+GGG | - | chr6.1:5749619-5749638 | None:intergenic | 45.0% | |
AATGCATATGCTGCACAGGT+AGG | + | chr6.1:5749009-5749028 | MS.gene074160:CDS | 45.0% | |
ACGAAAACCTTGTCTATGGC+AGG | - | chr6.1:5748701-5748720 | None:intergenic | 45.0% | |
AGATTCACCTGCCATAGACA+AGG | + | chr6.1:5748691-5748710 | MS.gene074160:CDS | 45.0% | |
AGTAACGGTCTCTGCTATAG+AGG | - | chr6.1:5748503-5748522 | None:intergenic | 45.0% | |
AGTCAAATGTGCCAAGCAAC+CGG | - | chr6.1:5748773-5748792 | None:intergenic | 45.0% | |
AGTGCAAATGCTCATCCTGT+TGG | + | chr6.1:5748367-5748386 | MS.gene074160:CDS | 45.0% | |
CAAGAAATGGAGCGAATGGT+CGG | - | chr6.1:5749620-5749639 | None:intergenic | 45.0% | |
CCAATTCTAGTATCCTTCCG+AGG | - | chr6.1:5749159-5749178 | None:intergenic | 45.0% | |
CCTCGGAAGGATACTAGAAT+TGG | + | chr6.1:5749156-5749175 | MS.gene074160:CDS | 45.0% | |
CTCTGCTATAGAGGTAGCAT+CGG | - | chr6.1:5748494-5748513 | None:intergenic | 45.0% | |
GAGCTCCTGAGTCATTCTTT+AGG | - | chr6.1:5750133-5750152 | None:intergenic | 45.0% | |
GGCAGCATATGAGCATTACA+CGG | - | chr6.1:5748868-5748887 | None:intergenic | 45.0% | |
GGGAATGGGATTTGATTCAG+AGG | + | chr6.1:5748966-5748985 | MS.gene074160:CDS | 45.0% | |
GTCTATGGCAGGTGAATCTT+CGG | - | chr6.1:5748690-5748709 | None:intergenic | 45.0% | |
GTGACACGAAACTTGCCATT+TGG | - | chr6.1:5748808-5748827 | None:intergenic | 45.0% | |
GTTACATGATACCTGCCATC+AGG | - | chr6.1:5749213-5749232 | None:intergenic | 45.0% | |
TCTATGGCAGGTGAATCTTC+GGG | - | chr6.1:5748689-5748708 | None:intergenic | 45.0% | |
TCTCAAGCATCTTGGGAAGA+TGG | + | chr6.1:5750160-5750179 | MS.gene074160:CDS | 45.0% | |
TCTGCTATAGAGGTAGCATC+GGG | - | chr6.1:5748493-5748512 | None:intergenic | 45.0% | |
TTGGGAAGATGGTGACTGAT+TGG | + | chr6.1:5750171-5750190 | MS.gene074160:CDS | 45.0% | |
TTTCGTATGCTATGGCCCAT+TGG | - | chr6.1:5750040-5750059 | None:intergenic | 45.0% | |
! | CTTGCTTCAGGGAAGGTTTT+CGG | + | chr6.1:5749100-5749119 | MS.gene074160:CDS | 45.0% |
! | GGAGTACCAAAACTGGGAAT+GGG | + | chr6.1:5748952-5748971 | MS.gene074160:CDS | 45.0% |
! | GTTGGATGGAGTACCAAAAC+TGG | + | chr6.1:5748945-5748964 | MS.gene074160:CDS | 45.0% |
! | TGGAGTACCAAAACTGGGAA+TGG | + | chr6.1:5748951-5748970 | MS.gene074160:CDS | 45.0% |
! | TTTCGTATTGACGCTAGCAG+AGG | + | chr6.1:5748451-5748470 | MS.gene074160:CDS | 45.0% |
! | TTTTGGTACTCCATCCAACG+TGG | - | chr6.1:5748944-5748963 | None:intergenic | 45.0% |
!!! | TCAGTTGCTTGAGGGCATTT+TGG | - | chr6.1:5749857-5749876 | None:intergenic | 45.0% |
ATAACCGAGTCCACGTTGGA+TGG | + | chr6.1:5748931-5748950 | MS.gene074160:CDS | 50.0% | |
ATGATATCGCCCATTAGGGC+TGG | - | chr6.1:5750242-5750261 | None:intergenic | 50.0% | |
CACTTTACTGTCTGCAGCAC+AGG | - | chr6.1:5748320-5748339 | None:intergenic | 50.0% | |
CGACCATTCGCTCCATTTCT+TGG | + | chr6.1:5749618-5749637 | MS.gene074160:CDS | 50.0% | |
CTGCTATAGAGGTAGCATCG+GGG | - | chr6.1:5748492-5748511 | None:intergenic | 50.0% | |
GAACATAACCGAGTCCACGT+TGG | + | chr6.1:5748927-5748946 | MS.gene074160:CDS | 50.0% | |
GGAAACAAGAACCGGTTGCT+TGG | + | chr6.1:5748759-5748778 | MS.gene074160:CDS | 50.0% | |
GGATGTAAAGAGACCTCGGA+AGG | + | chr6.1:5749143-5749162 | MS.gene074160:CDS | 50.0% | |
GGTGACTGATTGGCACTACA+AGG | + | chr6.1:5750181-5750200 | MS.gene074160:CDS | 50.0% | |
TACTCCATCCAACGTGGACT+CGG | - | chr6.1:5748938-5748957 | None:intergenic | 50.0% | |
TCCATCTGAGTAAGGCCAAC+AGG | - | chr6.1:5748385-5748404 | None:intergenic | 50.0% | |
TCTGCAGCACAGGAATCCTT+CGG | - | chr6.1:5748310-5748329 | None:intergenic | 50.0% | |
TGCAAGCAAGCTTGCCATGT+CGG | - | chr6.1:5750078-5750097 | None:intergenic | 50.0% | |
TGTGGCGCCAAATATTGGCA+TGG | + | chr6.1:5748549-5748568 | MS.gene074160:CDS | 50.0% | |
!! | GCATCGGGGTTTTGACACAT+CGG | - | chr6.1:5748478-5748497 | None:intergenic | 50.0% |
!! | TCCTGTTGGCCTTACTCAGA+TGG | + | chr6.1:5748381-5748400 | MS.gene074160:CDS | 50.0% |
CGGCATATGCCAGCCCTAAT+GGG | + | chr6.1:5750230-5750249 | MS.gene074160:CDS | 55.0% | |
CTGCAGCACAGGAATCCTTC+GGG | - | chr6.1:5748309-5748328 | None:intergenic | 55.0% | |
GCAGGAGAATCAATGCCCGA+AGG | + | chr6.1:5748291-5748310 | MS.gene074160:CDS | 55.0% | |
TTTCTCGTCAGCCTGATGGC+AGG | + | chr6.1:5749199-5749218 | MS.gene074160:CDS | 55.0% | |
! | CCATTAGGGCTGGCATATGC+CGG | - | chr6.1:5750232-5750251 | None:intergenic | 55.0% |
!! | CTGGAGCATTGCAGTGAGAG+TGG | + | chr6.1:5750347-5750366 | MS.gene074160:CDS | 55.0% |
CCGGCATATGCCAGCCCTAA+TGG | + | chr6.1:5750229-5750248 | MS.gene074160:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 5748286 | 5750586 | 5748286 | ID=MS.gene074160 |
chr6.1 | mRNA | 5748286 | 5750586 | 5748286 | ID=MS.gene074160.t1;Parent=MS.gene074160 |
chr6.1 | exon | 5748286 | 5750586 | 5748286 | ID=MS.gene074160.t1.exon1;Parent=MS.gene074160.t1 |
chr6.1 | CDS | 5748286 | 5750586 | 5748286 | ID=cds.MS.gene074160.t1;Parent=MS.gene074160.t1 |
Gene Sequence |
Protein sequence |