AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074251

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074251.t1 MTR_6g018270 92.446 278 21 0 1 278 1 278 0.0 511
MS.gene074251.t1 MTR_7g007010 60.323 310 82 9 1 278 1 301 1.84e-105 308
MS.gene074251.t1 MTR_6g453130 48.261 230 89 9 1 208 1 222 2.24e-64 201
MS.gene074251.t1 MTR_1g110840 50.761 197 74 8 1 182 1 189 2.73e-59 189
MS.gene074251.t1 MTR_6g054150 45.217 230 96 9 1 208 1 222 7.87e-57 182
MS.gene074251.t1 MTR_6g054080 46.018 226 92 10 1 204 1 218 1.21e-55 179
MS.gene074251.t1 MTR_4g095600 39.331 239 123 4 3 241 1 217 9.74e-54 174
MS.gene074251.t1 MTR_5g015880 55.072 138 52 1 3 140 1 128 2.36e-51 168
MS.gene074251.t1 MTR_1g106420 45.625 160 78 1 3 162 1 151 1.18e-45 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074251.t1 AT3G02550 52.817 284 103 7 1 274 1 263 1.21e-89 267
MS.gene074251.t1 AT1G67100 74.342 152 32 2 1 150 1 147 1.72e-78 238
MS.gene074251.t1 AT1G68510 48.249 257 93 4 1 241 1 233 2.06e-72 222
MS.gene074251.t1 AT4G37540 64.865 111 39 0 3 113 1 111 1.17e-50 167
MS.gene074251.t1 AT3G49940 64.545 110 39 0 3 112 1 110 1.19e-50 167
MS.gene074251.t1 AT5G67420 61.818 110 42 0 3 112 1 110 5.45e-50 165
MS.gene074251.t1 AT5G67420 61.818 110 42 0 3 112 1 110 5.45e-50 165

Find 92 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGACGATTCATGGCTTT+TGG 0.216509 6.2:+14344990 None:intergenic
AGGATCGTGAACCCTATTTA+TGG 0.235139 6.2:-14345297 MS.gene074251:CDS
AGACCCACTGACCCATAAAT+AGG 0.242504 6.2:+14345285 None:intergenic
TTTGGACCGGTCCACTTCTT+TGG 0.257677 6.2:+14345008 None:intergenic
CCGGACCCAACTTCTTTGTT+TGG 0.284722 6.2:+14345048 None:intergenic
CTCATCAACCTCATCAATTC+TGG 0.302253 6.2:-14346175 MS.gene074251:CDS
ACTCCGACTCATCATGAAAA+AGG 0.304175 6.2:+14344917 None:intergenic
GTCCACTTCTTTGGCCGAAT+TGG 0.320719 6.2:+14345017 None:intergenic
AAAGAAGTTGGGTCCGGTTC+AGG 0.324263 6.2:-14345042 MS.gene074251:CDS
CCAACTTCTTTGTTTGGCTT+CGG 0.335904 6.2:+14345054 None:intergenic
GAAGAGGAAAATTGTGTTGA+AGG 0.355819 6.2:-14344758 MS.gene074251:CDS
TTGTAACATAAGACCATGTT+TGG 0.384670 6.2:-14346269 MS.gene074251:CDS
TTTCTTCCAAAGTTGAGCTT+GGG 0.385887 6.2:-14344726 MS.gene074251:CDS
GGCCGAATTGGACCCTGAAC+CGG 0.393613 6.2:+14345029 None:intergenic
TTTGTTTGGCTTCGGCTTCA+CGG 0.394317 6.2:+14345062 None:intergenic
TGACACGTGGCGTATGTCAT+AGG 0.396608 6.2:+14345143 None:intergenic
GTTGGCTTGGAGCTGAGGCT+TGG 0.400046 6.2:-14344823 MS.gene074251:CDS
GTTTCTTCCAAAGTTGAGCT+TGG 0.412969 6.2:-14344727 MS.gene074251:CDS
TGAGAGGGCCCCACCATTCA+AGG 0.428342 6.2:-14345166 MS.gene074251:CDS
GTCAAGCCCAAGCTCAACTT+TGG 0.432757 6.2:+14344720 None:intergenic
TTCAGCAGTCTCCGAAGCTA+TGG 0.436375 6.2:+14345191 None:intergenic
TGTGAGTGATGGGGTTGGCT+TGG 0.437221 6.2:-14344836 MS.gene074251:CDS
GTAGCATTAGCTTGTGATTG+AGG 0.440070 6.2:+14346232 None:intergenic
GCTGGCTCAATGACGATTCA+TGG 0.444417 6.2:+14344983 None:intergenic
CCGAGGAGACTAAGCAGGTT+AGG 0.446326 6.2:-14345107 MS.gene074251:CDS
GACCCACTGACCCATAAATA+GGG 0.448799 6.2:+14345286 None:intergenic
GGATCGTGAACCCTATTTAT+GGG 0.457021 6.2:-14345296 MS.gene074251:CDS
CTTTCTTTAGCTTCTGACTC+AGG 0.457661 6.2:+14344889 None:intergenic
CCGAAGCCAAACAAAGAAGT+TGG 0.467795 6.2:-14345054 MS.gene074251:CDS
GTCCGGTTCAGGGTCCAATT+CGG 0.473428 6.2:-14345031 MS.gene074251:CDS
CATTGCTCTATGAGGCTTGT+GGG 0.474610 6.2:-14345320 MS.gene074251:CDS
ATGGGGTTGGCTTGGAGCTG+AGG 0.476741 6.2:-14344828 MS.gene074251:CDS
TAAAGAAAGGGGTCGAGCTA+AGG 0.482678 6.2:-14344875 MS.gene074251:CDS
AAGAAGTTGGGTCCGGTTCA+GGG 0.484358 6.2:-14345041 MS.gene074251:CDS
CTGAGGAAGGTGTGAGTGAT+GGG 0.489690 6.2:-14344846 MS.gene074251:CDS
CCACTTTCACTATCTTTACC+CGG 0.498112 6.2:+14344961 None:intergenic
CGAAGCCAAACAAAGAAGTT+GGG 0.503408 6.2:-14345053 MS.gene074251:CDS
GCCGATCACTCCCATAGCTT+CGG 0.503524 6.2:-14345202 MS.gene074251:CDS
TTTCACTATCTTTACCCGGC+TGG 0.506084 6.2:+14344965 None:intergenic
AAAATGAGAATGAGTTGTAA+TGG 0.507722 6.2:-14346325 MS.gene074251:CDS
CTGAGTCAGAAGCTAAAGAA+AGG 0.510485 6.2:-14344888 MS.gene074251:CDS
TGTCATAGGCCTTGAATGGT+GGG 0.511499 6.2:+14345157 None:intergenic
GCTTCACGGCTCTTCTGAAG+CGG 0.516787 6.2:+14345076 None:intergenic
GGTTCTGAAAATCTTCGTCC+TGG 0.520270 6.2:-14346154 MS.gene074251:intron
ATGTCATAGGCCTTGAATGG+TGG 0.523094 6.2:+14345156 None:intergenic
CCGGGTAAAGATAGTGAAAG+TGG 0.523543 6.2:-14344961 MS.gene074251:CDS
TGAGTCAGAAGCTAAAGAAA+GGG 0.529238 6.2:-14344887 MS.gene074251:CDS
CTTCACGGCTCTTCTGAAGC+GGG 0.533445 6.2:+14345077 None:intergenic
GTCCAATTCGGCCAAAGAAG+TGG 0.535373 6.2:-14345019 MS.gene074251:CDS
TGAATCGTCATTGAGCCAGC+CGG 0.537073 6.2:-14344980 MS.gene074251:CDS
GAAGGTGTGAGTGATGGGGT+TGG 0.537576 6.2:-14344841 MS.gene074251:CDS
TCATTGCTCTATGAGGCTTG+TGG 0.539310 6.2:-14345321 MS.gene074251:CDS
TCAGCAGTCTCCGAAGCTAT+GGG 0.539997 6.2:+14345192 None:intergenic
GAATCGTCATTGAGCCAGCC+GGG 0.540503 6.2:-14344979 MS.gene074251:CDS
GCTGAGGCTTGGTATCGAAC+CGG 0.540510 6.2:-14344812 MS.gene074251:CDS
AAAGAAAGGGGTCGAGCTAA+GGG 0.545344 6.2:-14344874 MS.gene074251:CDS
ACCAGCACGACCATAAAACT+TGG 0.548427 6.2:+14346198 None:intergenic
CCAAACAAAGAAGTTGGGTC+CGG 0.550063 6.2:-14345048 MS.gene074251:CDS
CACTTGATCCATTCCAAACA+TGG 0.555522 6.2:+14346256 None:intergenic
CCTAACCTGCTTAGTCTCCT+CGG 0.555861 6.2:+14345107 None:intergenic
ACATAAGACCATGTTTGGAA+TGG 0.560066 6.2:-14346264 MS.gene074251:CDS
AACCCTATTTATGGGTCAGT+GGG 0.560507 6.2:-14345288 MS.gene074251:CDS
CACTCACACCTTCCTCAGCT+CGG 0.561092 6.2:+14344851 None:intergenic
TCCGAAGCTATGGGAGTGAT+CGG 0.562597 6.2:+14345201 None:intergenic
GCACCTCTGTCAAGCCGCTG+TGG 0.565125 6.2:-14345244 MS.gene074251:CDS
CGGGTAAAGATAGTGAAAGT+GGG 0.566796 6.2:-14344960 MS.gene074251:CDS
GCTGAGGAAGGTGTGAGTGA+TGG 0.567541 6.2:-14344847 MS.gene074251:CDS
GTCATAGGCCTTGAATGGTG+GGG 0.570001 6.2:+14345158 None:intergenic
GAACCCTATTTATGGGTCAG+TGG 0.571330 6.2:-14345289 MS.gene074251:CDS
GCTAAGGGCCGAGCTGAGGA+AGG 0.574010 6.2:-14344859 MS.gene074251:CDS
CGTATGTCATAGGCCTTGAA+TGG 0.576947 6.2:+14345153 None:intergenic
GATCGGCTCGCCTTTCAAAA+CGG 0.577788 6.2:+14345218 None:intergenic
TCGAGCTAAGGGCCGAGCTG+AGG 0.580568 6.2:-14344863 MS.gene074251:CDS
CGGAGACTGCTGAAAATGAG+AGG 0.581555 6.2:-14345182 MS.gene074251:CDS
TGCTCTATGAGGCTTGTGGG+AGG 0.581729 6.2:-14345317 MS.gene074251:CDS
TTTCAGAACCAGAATTGATG+AGG 0.582737 6.2:+14346167 None:intergenic
CTCAACCCATTCAAGCTGAT+AGG 0.591547 6.2:+14344698 None:intergenic
ATTCGGCCAAAGAAGTGGAC+CGG 0.592102 6.2:-14345014 MS.gene074251:CDS
TAACTCCGAGGAGACTAAGC+AGG 0.603900 6.2:-14345112 MS.gene074251:CDS
GGTGTCACATGAGGAGTACA+TGG 0.616138 6.2:-14344791 MS.gene074251:CDS
AGACTAAGCAGGTTAGGACT+CGG 0.616984 6.2:-14345101 MS.gene074251:CDS
ACATGGTTCCCATTAAGAAG+AGG 0.617211 6.2:-14344774 MS.gene074251:CDS
CTTCCACAGCGGCTTGACAG+AGG 0.620565 6.2:+14345241 None:intergenic
GGAGACTGCTGAAAATGAGA+GGG 0.625900 6.2:-14345181 MS.gene074251:CDS
TAGTGAAAGTGGGGTCTCTG+TGG 0.628045 6.2:-14344950 MS.gene074251:CDS
TATCGAACCGGTGTCACATG+AGG 0.633807 6.2:-14344800 MS.gene074251:CDS
ATGTACTCCTCATGTGACAC+CGG 0.646012 6.2:+14344793 None:intergenic
TGAGGAAGGTGTGAGTGATG+GGG 0.650116 6.2:-14344845 MS.gene074251:CDS
GAGTCAGAAGCTAAAGAAAG+GGG 0.652141 6.2:-14344886 MS.gene074251:CDS
GGGTAAAGATAGTGAAAGTG+GGG 0.688058 6.2:-14344959 MS.gene074251:CDS
GTCAAAAGATGATAACTCCG+AGG 0.733312 6.2:-14345124 MS.gene074251:CDS
TTTCAAAACGGCTTCCACAG+CGG 0.749245 6.2:+14345230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAATCTTAATTTTTCA+TGG + chr6.2:14345363-14345382 None:intergenic 10.0%
!!! TTGTTAATTGTTTTTTATTT+TGG - chr6.2:14345254-14345273 MS.gene074251:CDS 10.0%
!! AAAAAAGTTACTATGATTTA+TGG - chr6.2:14345454-14345473 MS.gene074251:intron 15.0%
!! AACTATTAAAGCAGAAAATT+TGG + chr6.2:14345169-14345188 None:intergenic 20.0%
!! ACTATTAAAGCAGAAAATTT+GGG + chr6.2:14345168-14345187 None:intergenic 20.0%
!! ATGGAAAATGAGTAAATAAT+TGG + chr6.2:14345509-14345528 None:intergenic 20.0%
!!! AAATCATAGTAACTTTTTTC+AGG + chr6.2:14345453-14345472 None:intergenic 20.0%
!!! AATTCTTTAGAAATTTGACA+TGG + chr6.2:14345608-14345627 None:intergenic 20.0%
!!! GAAAATCTTTAGAAGAAATT+TGG - chr6.2:14345336-14345355 MS.gene074251:intron 20.0%
!!! GTCAAATTTCTAAAGAATTT+GGG - chr6.2:14345609-14345628 MS.gene074251:intron 20.0%
!!! TCAAATTTCTAAAGAATTTG+GGG - chr6.2:14345610-14345629 MS.gene074251:intron 20.0%
!!! TGATTTTTATTTGAATCCTT+AGG - chr6.2:14345196-14345215 MS.gene074251:CDS 20.0%
!!! TGTCAAATTTCTAAAGAATT+TGG - chr6.2:14345608-14345627 MS.gene074251:intron 20.0%
!!! TGTTTTTTATTTTGGTACAT+AGG - chr6.2:14345262-14345281 MS.gene074251:CDS 20.0%
!!! TTTCATATTGATTGTGATTT+TGG - chr6.2:14345658-14345677 MS.gene074251:intron 20.0%
! AAAATAACGAGTACAAAACA+TGG + chr6.2:14345528-14345547 None:intergenic 25.0%
! AGAAATTTGACATGGAATTA+AGG + chr6.2:14345600-14345619 None:intergenic 25.0%
! ATTTGATTCTTCTGATAATC+CGG - chr6.2:14345394-14345413 MS.gene074251:intron 25.0%
! GTACAACATAAAAATTTACC+AGG + chr6.2:14344897-14344916 None:intergenic 25.0%
!! ACAATTTTCCTCTTCTTAAT+GGG + chr6.2:14346267-14346286 None:intergenic 25.0%
!! TACAAGATTTTAGATTTGAG+AGG + chr6.2:14345088-14345107 None:intergenic 25.0%
!!! GATGTAGAGTTTTAAGAAAA+GGG - chr6.2:14344727-14344746 MS.gene074251:CDS 25.0%
CATAGGGACATATCTATAAA+AGG + chr6.2:14344934-14344953 None:intergenic 30.0%
GGATTATCAGAAGAATCAAA+TGG + chr6.2:14345395-14345414 None:intergenic 30.0%
TCAGAATTTCGGTAAACAAT+TGG - chr6.2:14345019-14345038 MS.gene074251:CDS 30.0%
TTGTAACATAAGACCATGTT+TGG - chr6.2:14344761-14344780 MS.gene074251:CDS 30.0%
! CACAATTTTCCTCTTCTTAA+TGG + chr6.2:14346268-14346287 None:intergenic 30.0%
! GAATTAAGGTTTGAAATTGC+TGG + chr6.2:14345586-14345605 None:intergenic 30.0%
! GGTGTATTTGTTAGTTGTTA+TGG - chr6.2:14345283-14345302 MS.gene074251:CDS 30.0%
! GTTTTTCTTGCCAAGTTTTA+TGG - chr6.2:14344822-14344841 MS.gene074251:CDS 30.0%
!! AATCCTTTTTCATGATGAGT+CGG - chr6.2:14346110-14346129 MS.gene074251:intron 30.0%
!!! GGATGTAGAGTTTTAAGAAA+AGG - chr6.2:14344726-14344745 MS.gene074251:CDS 30.0%
ACATAAGACCATGTTTGGAA+TGG - chr6.2:14344766-14344785 MS.gene074251:CDS 35.0%
ATATGTCCCTATGATCTATG+TGG - chr6.2:14344941-14344960 MS.gene074251:CDS 35.0%
ATCAACCTTTAGCTACCTTT+CGG + chr6.2:14345427-14345446 None:intergenic 35.0%
ATTAACAAACACCCACCAAA+TGG + chr6.2:14345242-14345261 None:intergenic 35.0%
CACAATCTCAATGTCTATCA+CGG + chr6.2:14345062-14345081 None:intergenic 35.0%
CGGTGAATTTGTCAGAATTT+CGG - chr6.2:14345008-14345027 MS.gene074251:CDS 35.0%
GAAGAGGAAAATTGTGTTGA+AGG - chr6.2:14346272-14346291 MS.gene074251:CDS 35.0%
TATGTCCCTATGATCTATGT+GGG - chr6.2:14344942-14344961 MS.gene074251:CDS 35.0%
TGAGTCAGAAGCTAAAGAAA+GGG - chr6.2:14346143-14346162 MS.gene074251:intron 35.0%
TTTCAGAACCAGAATTGATG+AGG + chr6.2:14344866-14344885 None:intergenic 35.0%
TTTCTTCCAAAGTTGAGCTT+GGG - chr6.2:14346304-14346323 MS.gene074251:CDS 35.0%
TTTGAATCCTTAGGCAATTG+AGG - chr6.2:14345205-14345224 MS.gene074251:CDS 35.0%
TTTGGTAAGATCCATTTGGT+GGG - chr6.2:14345228-14345247 MS.gene074251:CDS 35.0%
! AGTTATCATCTTTTGACACG+TGG + chr6.2:14345903-14345922 None:intergenic 35.0%
! TTTTCGTTCATTGCTCTATG+AGG - chr6.2:14345702-14345721 MS.gene074251:intron 35.0%
AACCCTATTTATGGGTCAGT+GGG - chr6.2:14345742-14345761 MS.gene074251:intron 40.0%
ACATGGTTCCCATTAAGAAG+AGG - chr6.2:14346256-14346275 MS.gene074251:CDS 40.0%
ACTCCGACTCATCATGAAAA+AGG + chr6.2:14346116-14346135 None:intergenic 40.0%
AGGATCGTGAACCCTATTTA+TGG - chr6.2:14345733-14345752 MS.gene074251:intron 40.0%
ATCCTTAGGCAATTGAGGTT+TGG - chr6.2:14345210-14345229 MS.gene074251:CDS 40.0%
ATGTCCCCACATAGATCATA+GGG + chr6.2:14344950-14344969 None:intergenic 40.0%
ATGTCCCTATGATCTATGTG+GGG - chr6.2:14344943-14344962 MS.gene074251:CDS 40.0%
CACTTGATCCATTCCAAACA+TGG + chr6.2:14344777-14344796 None:intergenic 40.0%
CCACTTTCACTATCTTTACC+CGG + chr6.2:14346072-14346091 None:intergenic 40.0%
CGAAGCCAAACAAAGAAGTT+GGG - chr6.2:14345977-14345996 MS.gene074251:intron 40.0%
CGGGTAAAGATAGTGAAAGT+GGG - chr6.2:14346070-14346089 MS.gene074251:intron 40.0%
CTATGAAGTCTCCTGTATCA+CGG - chr6.2:14344988-14345007 MS.gene074251:CDS 40.0%
CTCATCAACCTCATCAATTC+TGG - chr6.2:14344855-14344874 MS.gene074251:CDS 40.0%
CTGAGTCAGAAGCTAAAGAA+AGG - chr6.2:14346142-14346161 MS.gene074251:intron 40.0%
GAGTCAGAAGCTAAAGAAAG+GGG - chr6.2:14346144-14346163 MS.gene074251:intron 40.0%
GGATCGTGAACCCTATTTAT+GGG - chr6.2:14345734-14345753 MS.gene074251:intron 40.0%
GGGTAAAGATAGTGAAAGTG+GGG - chr6.2:14346071-14346090 MS.gene074251:intron 40.0%
GTCAAAAGATGATAACTCCG+AGG - chr6.2:14345906-14345925 MS.gene074251:intron 40.0%
GTTTCTTCCAAAGTTGAGCT+TGG - chr6.2:14346303-14346322 MS.gene074251:CDS 40.0%
GTTTGGTAAGATCCATTTGG+TGG - chr6.2:14345227-14345246 MS.gene074251:CDS 40.0%
TACCAAACCTCAATTGCCTA+AGG + chr6.2:14345215-14345234 None:intergenic 40.0%
TCTTCTGATAATCCGGAGTT+TGG - chr6.2:14345401-14345420 MS.gene074251:intron 40.0%
TGACAAATTCACCGTGATAC+AGG + chr6.2:14345002-14345021 None:intergenic 40.0%
! CAATGACGATTCATGGCTTT+TGG + chr6.2:14346043-14346062 None:intergenic 40.0%
! CCAACTTCTTTGTTTGGCTT+CGG + chr6.2:14345979-14345998 None:intergenic 40.0%
! CTTTCTTTAGCTTCTGACTC+AGG + chr6.2:14346144-14346163 None:intergenic 40.0%
! GAGGTTTGGTAAGATCCATT+TGG - chr6.2:14345224-14345243 MS.gene074251:CDS 40.0%
!! GTAGCATTAGCTTGTGATTG+AGG + chr6.2:14344801-14344820 None:intergenic 40.0%
AAAGAAAGGGGTCGAGCTAA+GGG - chr6.2:14346156-14346175 MS.gene074251:CDS 45.0%
ACCAGCACGACCATAAAACT+TGG + chr6.2:14344835-14344854 None:intergenic 45.0%
AGACCCACTGACCCATAAAT+AGG + chr6.2:14345748-14345767 None:intergenic 45.0%
AGACTAAGCAGGTTAGGACT+CGG - chr6.2:14345929-14345948 MS.gene074251:intron 45.0%
ATGTACTCCTCATGTGACAC+CGG + chr6.2:14346240-14346259 None:intergenic 45.0%
ATGTCATAGGCCTTGAATGG+TGG + chr6.2:14345877-14345896 None:intergenic 45.0%
CATTGCTCTATGAGGCTTGT+GGG - chr6.2:14345710-14345729 MS.gene074251:intron 45.0%
CCAAACAAAGAAGTTGGGTC+CGG - chr6.2:14345982-14346001 MS.gene074251:intron 45.0%
CCGAAGCCAAACAAAGAAGT+TGG - chr6.2:14345976-14345995 MS.gene074251:intron 45.0%
CCGGGTAAAGATAGTGAAAG+TGG - chr6.2:14346069-14346088 MS.gene074251:intron 45.0%
CGTATGTCATAGGCCTTGAA+TGG + chr6.2:14345880-14345899 None:intergenic 45.0%
GAACCCTATTTATGGGTCAG+TGG - chr6.2:14345741-14345760 MS.gene074251:intron 45.0%
GACCCACTGACCCATAAATA+GGG + chr6.2:14345747-14345766 None:intergenic 45.0%
GATGTCCCCACATAGATCAT+AGG + chr6.2:14344951-14344970 None:intergenic 45.0%
GGAGACTGCTGAAAATGAGA+GGG - chr6.2:14345849-14345868 MS.gene074251:intron 45.0%
TAAAGAAAGGGGTCGAGCTA+AGG - chr6.2:14346155-14346174 MS.gene074251:CDS 45.0%
TCATTGCTCTATGAGGCTTG+TGG - chr6.2:14345709-14345728 MS.gene074251:intron 45.0%
TGTCATAGGCCTTGAATGGT+GGG + chr6.2:14345876-14345895 None:intergenic 45.0%
TTTCAAAACGGCTTCCACAG+CGG + chr6.2:14345803-14345822 None:intergenic 45.0%
TTTCACTATCTTTACCCGGC+TGG + chr6.2:14346068-14346087 None:intergenic 45.0%
TTTGGCCGAAAGGTAGCTAA+AGG - chr6.2:14345419-14345438 MS.gene074251:intron 45.0%
! ACGATTCATGGCTTTTGGAC+CGG + chr6.2:14346038-14346057 None:intergenic 45.0%
! ATGGGTCAGTGGGTCTTTTA+TGG - chr6.2:14345752-14345771 MS.gene074251:intron 45.0%
! GTCTTTTATGGTCTGGTAGC+TGG - chr6.2:14345764-14345783 MS.gene074251:intron 45.0%
! TCAGTGGGTCTTTTATGGTC+TGG - chr6.2:14345757-14345776 MS.gene074251:intron 45.0%
! TTTGTTTGGCTTCGGCTTCA+CGG + chr6.2:14345971-14345990 None:intergenic 45.0%
!! GGTTCTGAAAATCTTCGTCC+TGG - chr6.2:14344876-14344895 MS.gene074251:CDS 45.0%
AAAGAAGTTGGGTCCGGTTC+AGG - chr6.2:14345988-14346007 MS.gene074251:intron 50.0%
AAGAAGTTGGGTCCGGTTCA+GGG - chr6.2:14345989-14346008 MS.gene074251:intron 50.0%
ATTCGGCCAAAGAAGTGGAC+CGG - chr6.2:14346016-14346035 MS.gene074251:intron 50.0%
CCGGACCCAACTTCTTTGTT+TGG + chr6.2:14345985-14346004 None:intergenic 50.0%
CCTAACCTGCTTAGTCTCCT+CGG + chr6.2:14345926-14345945 None:intergenic 50.0%
CGGAGACTGCTGAAAATGAG+AGG - chr6.2:14345848-14345867 MS.gene074251:intron 50.0%
GTCAAGCCCAAGCTCAACTT+TGG + chr6.2:14346313-14346332 None:intergenic 50.0%
GTCATAGGCCTTGAATGGTG+GGG + chr6.2:14345875-14345894 None:intergenic 50.0%
GTCCAATTCGGCCAAAGAAG+TGG - chr6.2:14346011-14346030 MS.gene074251:intron 50.0%
GTCCACTTCTTTGGCCGAAT+TGG + chr6.2:14346016-14346035 None:intergenic 50.0%
TAACTCCGAGGAGACTAAGC+AGG - chr6.2:14345918-14345937 MS.gene074251:intron 50.0%
TAATCCGGAGTTTGGCCGAA+AGG - chr6.2:14345409-14345428 MS.gene074251:intron 50.0%
TAGTGAAAGTGGGGTCTCTG+TGG - chr6.2:14346080-14346099 MS.gene074251:intron 50.0%
TCAGCAGTCTCCGAAGCTAT+GGG + chr6.2:14345841-14345860 None:intergenic 50.0%
TCCGAAGCTATGGGAGTGAT+CGG + chr6.2:14345832-14345851 None:intergenic 50.0%
TGAATCGTCATTGAGCCAGC+CGG - chr6.2:14346050-14346069 MS.gene074251:intron 50.0%
TGACACGTGGCGTATGTCAT+AGG + chr6.2:14345890-14345909 None:intergenic 50.0%
TTCAGCAGTCTCCGAAGCTA+TGG + chr6.2:14345842-14345861 None:intergenic 50.0%
TTTGGACCGGTCCACTTCTT+TGG + chr6.2:14346025-14346044 None:intergenic 50.0%
! CTGAGGAAGGTGTGAGTGAT+GGG - chr6.2:14346184-14346203 MS.gene074251:CDS 50.0%
! GCTGGCTCAATGACGATTCA+TGG + chr6.2:14346050-14346069 None:intergenic 50.0%
! GGTGTCACATGAGGAGTACA+TGG - chr6.2:14346239-14346258 MS.gene074251:CDS 50.0%
! TGAGGAAGGTGTGAGTGATG+GGG - chr6.2:14346185-14346204 MS.gene074251:CDS 50.0%
!! GATCGGCTCGCCTTTCAAAA+CGG + chr6.2:14345815-14345834 None:intergenic 50.0%
!! GCCAAGTTTTATGGTCGTGC+TGG - chr6.2:14344831-14344850 MS.gene074251:CDS 50.0%
!! GCTGTGGAAGCCGTTTTGAA+AGG - chr6.2:14345802-14345821 MS.gene074251:intron 50.0%
!! TATCGAACCGGTGTCACATG+AGG - chr6.2:14346230-14346249 MS.gene074251:CDS 50.0%
CACTCACACCTTCCTCAGCT+CGG + chr6.2:14346182-14346201 None:intergenic 55.0%
CCGAGGAGACTAAGCAGGTT+AGG - chr6.2:14345923-14345942 MS.gene074251:intron 55.0%
GAATCGTCATTGAGCCAGCC+GGG - chr6.2:14346051-14346070 MS.gene074251:intron 55.0%
GCCGATCACTCCCATAGCTT+CGG - chr6.2:14345828-14345847 MS.gene074251:intron 55.0%
GCTACCTTTCGGCCAAACTC+CGG + chr6.2:14345416-14345435 None:intergenic 55.0%
GTCCGGTTCAGGGTCCAATT+CGG - chr6.2:14345999-14346018 MS.gene074251:intron 55.0%
TGCTCTATGAGGCTTGTGGG+AGG - chr6.2:14345713-14345732 MS.gene074251:intron 55.0%
! GAAGGTGTGAGTGATGGGGT+TGG - chr6.2:14346189-14346208 MS.gene074251:CDS 55.0%
! GCTGAGGAAGGTGTGAGTGA+TGG - chr6.2:14346183-14346202 MS.gene074251:CDS 55.0%
! GCTGAGGCTTGGTATCGAAC+CGG - chr6.2:14346218-14346237 MS.gene074251:CDS 55.0%
! GCTTCACGGCTCTTCTGAAG+CGG + chr6.2:14345957-14345976 None:intergenic 55.0%
!! CTTCACGGCTCTTCTGAAGC+GGG + chr6.2:14345956-14345975 None:intergenic 55.0%
!! TGTGAGTGATGGGGTTGGCT+TGG - chr6.2:14346194-14346213 MS.gene074251:CDS 55.0%
CTTCCACAGCGGCTTGACAG+AGG + chr6.2:14345792-14345811 None:intergenic 60.0%
GGCCGAATTGGACCCTGAAC+CGG + chr6.2:14346004-14346023 None:intergenic 60.0%
TGAGAGGGCCCCACCATTCA+AGG - chr6.2:14345864-14345883 MS.gene074251:intron 60.0%
!! ATGGGGTTGGCTTGGAGCTG+AGG - chr6.2:14346202-14346221 MS.gene074251:CDS 60.0%
!! GTTGGCTTGGAGCTGAGGCT+TGG - chr6.2:14346207-14346226 MS.gene074251:CDS 60.0%
GCACCTCTGTCAAGCCGCTG+TGG - chr6.2:14345786-14345805 MS.gene074251:intron 65.0%
GCTAAGGGCCGAGCTGAGGA+AGG - chr6.2:14346171-14346190 MS.gene074251:CDS 65.0%
TCGAGCTAAGGGCCGAGCTG+AGG - chr6.2:14346167-14346186 MS.gene074251:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 14344708 14346344 14344708 ID=MS.gene074251
chr6.2 mRNA 14344708 14346344 14344708 ID=MS.gene074251.t1;Parent=MS.gene074251
chr6.2 exon 14346155 14346344 14346155 ID=MS.gene074251.t1.exon1;Parent=MS.gene074251.t1
chr6.2 CDS 14346155 14346344 14346155 ID=cds.MS.gene074251.t1;Parent=MS.gene074251.t1
chr6.2 exon 14344708 14345354 14344708 ID=MS.gene074251.t1.exon2;Parent=MS.gene074251.t1
chr6.2 CDS 14344708 14345354 14344708 ID=cds.MS.gene074251.t1;Parent=MS.gene074251.t1
Gene Sequence

>MS.gene074251

ATGAGAATGAGTTGTAATGGATGTAGAGTTTTAAGAAAAGGGTGTAGTGAAGATTGTAACATAAGACCATGTTTGGAATGGATCAAGTGTCCTCAATCACAAGCTAATGCTACTGTTTTTCTTGCCAAGTTTTATGGTCGTGCTGGTCTCATCAACCTCATCAATTCTGGTTCTGAAAATCTTCGTCCTGGTAAATTTTTATGTTGTACTTTTAATTTCTTTACCTTTTATAGATATGTCCCTATGATCTATGTGGGGACATCAAAGTTCTTTTAAGTCTCTATGAAGTCTCCTGTATCACGGTGAATTTGTCAGAATTTCGGTAAACAATTGGTAATTTGAGCAAATCTACCGTGATAGACATTGAGATTGTGTCACCTCTCAAATCTAAAATCTTGTAATTTTCTTTTAAATTTTTCATTTTATCATTTGAGACAAGTGCAAAATTTAGATCAAACCCAAATTTTCTGCTTTAATAGTTTTGTAAATGATTTTTATTTGAATCCTTAGGCAATTGAGGTTTGGTAAGATCCATTTGGTGGGTGTTTGTTAATTGTTTTTTATTTTGGTACATAGGTGTATTTGTTAGTTGTTATGGTTGAAAGTTCTGATTTTTTTCATACATGTTGAAAATCTTTAGAAGAAATTTGGACCATGAAAAATTAAGATTTTTTTTTTTGTTAACCATTTGATTCTTCTGATAATCCGGAGTTTGGCCGAAAGGTAGCTAAAGGTTGATAAACCTGAAAAAAGTTACTATGATTTATGGCACATTAATCACTATGATAAAAAAAAAAACCAATTATTTACTCATTTTCCATGTTTTGTACTCGTTATTTTTTGACAAAGTTTTGTACTTGTTATTGTAATATTGACCAGCAATTTCAAACCTTAATTCCATGTCAAATTTCTAAAGAATTTGGGGTTCTTTTGAAAAAATTATATCTACATTTCATATTGATTGTGATTTTGGTATTTTTTTTTTTTCAGCTATTTTTCGTTCATTGCTCTATGAGGCTTGTGGGAGGATCGTGAACCCTATTTATGGGTCAGTGGGTCTTTTATGGTCTGGTAGCTGGCACCTCTGTCAAGCCGCTGTGGAAGCCGTTTTGAAAGGCGAGCCGATCACTCCCATAGCTTCGGAGACTGCTGAAAATGAGAGGGCCCCACCATTCAAGGCCTATGACATACGCCACGTGTCAAAAGATGATAACTCCGAGGAGACTAAGCAGGTTAGGACTCGGTCCCGCTTCAGAAGAGCCGTGAAGCCGAAGCCAAACAAAGAAGTTGGGTCCGGTTCAGGGTCCAATTCGGCCAAAGAAGTGGACCGGTCCAAAAGCCATGAATCGTCATTGAGCCAGCCGGGTAAAGATAGTGAAAGTGGGGTCTCTGTGGAGACTTCAATCCTTTTTCATGATGAGTCGGAGTTTGAACCTGAGTCAGAAGCTAAAGAAAGGGGTCGAGCTAAGGGCCGAGCTGAGGAAGGTGTGAGTGATGGGGTTGGCTTGGAGCTGAGGCTTGGTATCGAACCGGTGTCACATGAGGAGTACATGGTTCCCATTAAGAAGAGGAAAATTGTGTTGAAGGATTGTAGTGTTTCTTCCAAAGTTGAGCTTGGGCTTGACCTATCAGCTTGA
Protein sequence

>MS.gene074251.t1

MRMSCNGCRVLRKGCSEDCNIRPCLEWIKCPQSQANATVFLAKFYGRAGLINLINSGSENLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAAVEAVLKGEPITPIASETAENERAPPFKAYDIRHVSKDDNSEETKQVRTRSRFRRAVKPKPNKEVGSGSGSNSAKEVDRSKSHESSLSQPGKDSESGVSVETSILFHDESEFEPESEAKERGRAKGRAEEGVSDGVGLELRLGIEPVSHEEYMVPIKKRKIVLKDCSVSSKVELGLDLSA