AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074275

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074275.t1 MTR_1g047060 60.938 64 25 0 112 175 3 66 9.29e-22 86.3
MS.gene074275.t1 MTR_4g094302 28.877 187 108 8 4 176 11 186 1.89e-15 72.4
MS.gene074275.t1 MTR_5g021710 31.169 154 89 5 4 146 8 155 1.14e-14 72.4
MS.gene074275.t1 MTR_7g105170 28.571 175 100 8 1 153 1 172 2.58e-14 70.5
MS.gene074275.t1 MTR_4g094302 32.283 127 77 5 4 130 11 128 2.66e-14 68.6
MS.gene074275.t1 MTR_2g080010 29.878 164 94 5 4 161 15 163 5.21e-14 70.5
MS.gene074275.t1 MTR_5g012080 30.818 159 85 8 4 146 7 156 8.49e-14 70.1
MS.gene074275.t1 MTR_8g059170 30.818 159 84 7 4 146 14 162 1.93e-13 68.9
MS.gene074275.t1 MTR_8g023900 29.487 156 91 6 2 145 10 158 1.99e-13 69.3
MS.gene074275.t1 MTR_8g076110 31.818 154 88 5 4 146 6 153 3.00e-13 68.2
MS.gene074275.t1 MTR_2g079990 30.573 157 85 7 4 146 16 162 4.11e-13 67.8
MS.gene074275.t1 MTR_4g081870 29.375 160 87 7 4 146 9 159 6.39e-13 66.6
MS.gene074275.t1 MTR_2g086880 29.530 149 85 7 6 145 20 157 1.34e-12 67.0
MS.gene074275.t1 MTR_4g035590 30.286 175 100 8 4 165 8 173 1.54e-12 66.2
MS.gene074275.t1 MTR_2g086880 29.530 149 85 7 6 145 20 157 1.58e-12 66.6
MS.gene074275.t1 MTR_3g096920 28.750 160 88 7 4 147 7 156 2.00e-12 65.5
MS.gene074275.t1 MTR_3g109340 30.573 157 90 6 2 146 20 169 2.66e-12 65.5
MS.gene074275.t1 MTR_2g079990 33.582 134 72 6 4 130 16 139 2.73e-12 65.9
MS.gene074275.t1 MTR_5g076850 29.936 157 88 7 4 146 6 154 5.31e-12 65.1
MS.gene074275.t1 MTR_8g023860 29.560 159 89 7 1 146 9 157 5.96e-12 64.7
MS.gene074275.t1 MTR_3g096920 31.387 137 78 6 4 134 7 133 1.00e-11 63.9
MS.gene074275.t1 MTR_6g011860 28.249 177 95 8 1 154 12 179 1.48e-11 63.5
MS.gene074275.t1 MTR_5g014300 25.743 202 126 9 4 187 6 201 1.63e-11 63.2
MS.gene074275.t1 MTR_1g090720 32.099 162 84 6 4 146 42 196 1.78e-11 63.5
MS.gene074275.t1 MTR_1g069805 30.519 154 87 8 4 146 10 154 2.25e-11 62.4
MS.gene074275.t1 MTR_3g088110 28.750 160 88 7 4 147 7 156 2.44e-11 62.4
MS.gene074275.t1 MTR_7g085220 26.786 168 90 7 4 146 8 167 2.62e-11 62.8
MS.gene074275.t1 MTR_2g062730 29.299 157 89 6 4 146 10 158 2.73e-11 62.8
MS.gene074275.t1 MTR_7g097090 31.169 154 86 8 4 146 10 154 2.91e-11 62.4
MS.gene074275.t1 MTR_1g097300 32.576 132 76 5 6 131 21 145 3.18e-11 62.8
MS.gene074275.t1 MTR_4g134460 32.847 137 74 7 2 130 52 178 3.53e-11 62.4
MS.gene074275.t1 MTR_3g109340 28.846 156 93 6 2 146 20 168 4.74e-11 62.0
MS.gene074275.t1 MTR_8g467490 26.786 168 92 7 2 146 12 171 7.39e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074275.t1 AT2G24430 33.758 157 85 6 2 146 14 163 2.14e-15 74.3
MS.gene074275.t1 AT2G24430 33.758 157 85 6 2 146 14 163 2.14e-15 74.3
MS.gene074275.t1 AT2G18060 31.169 154 89 5 4 146 9 156 4.50e-15 73.6
MS.gene074275.t1 AT2G18060 31.169 154 89 5 4 146 9 156 4.50e-15 73.6
MS.gene074275.t1 AT1G12260 33.758 157 81 8 4 146 7 154 6.33e-15 73.2
MS.gene074275.t1 AT1G12260 33.758 157 81 8 4 146 7 154 8.79e-15 73.2
MS.gene074275.t1 AT1G62700 31.847 157 84 7 4 146 7 154 3.75e-14 71.2
MS.gene074275.t1 AT1G62700 31.847 157 84 7 4 146 7 154 3.75e-14 71.2
MS.gene074275.t1 AT4G27410 29.545 176 89 8 4 151 14 182 1.11e-13 69.3
MS.gene074275.t1 AT3G03200 31.013 158 86 7 4 146 6 155 2.05e-13 69.3
MS.gene074275.t1 AT5G08790 27.751 209 110 8 4 181 7 205 2.23e-13 68.2
MS.gene074275.t1 AT1G69490 29.375 160 87 6 4 146 9 159 2.68e-13 67.8
MS.gene074275.t1 AT2G27300 28.082 146 95 4 4 145 14 153 3.29e-13 68.2
MS.gene074275.t1 AT1G54330 30.065 153 90 6 4 146 6 151 7.99e-13 67.0
MS.gene074275.t1 AT1G52890 31.210 157 84 8 4 146 14 160 1.42e-12 66.2
MS.gene074275.t1 AT5G63790 30.247 162 85 7 4 147 60 211 1.81e-12 65.9
MS.gene074275.t1 AT5G63790 30.247 162 85 7 4 147 50 201 1.83e-12 65.9
MS.gene074275.t1 AT1G65910 29.487 156 90 6 4 146 6 154 1.99e-12 66.6
MS.gene074275.t1 AT5G04395 31.579 152 83 6 4 138 28 175 2.11e-12 63.9
MS.gene074275.t1 AT3G44290 27.083 144 95 4 6 145 16 153 2.36e-12 64.7
MS.gene074275.t1 AT4G17980 30.380 158 88 6 4 145 6 157 2.46e-12 65.1
MS.gene074275.t1 AT3G44290 27.083 144 95 4 6 145 16 153 2.60e-12 65.5
MS.gene074275.t1 AT4G17980 30.189 159 89 6 3 145 5 157 3.31e-12 65.1
MS.gene074275.t1 AT2G02450 31.361 169 95 7 6 162 53 212 3.95e-12 65.1
MS.gene074275.t1 AT2G02450 30.814 172 98 7 3 162 50 212 4.50e-12 65.1
MS.gene074275.t1 AT5G39610 30.380 158 86 7 4 146 20 168 4.64e-12 64.7
MS.gene074275.t1 AT4G28530 29.412 170 92 6 4 150 10 174 9.23e-12 63.9
MS.gene074275.t1 AT5G22290 28.966 145 92 5 6 145 23 161 9.54e-12 63.9
MS.gene074275.t1 AT5G64530 28.351 194 105 7 4 176 3 183 9.86e-12 62.4
MS.gene074275.t1 AT2G43000 30.323 155 85 8 6 146 20 165 1.24e-11 63.2
MS.gene074275.t1 AT1G32510 28.834 163 90 7 3 145 5 161 1.89e-11 62.8
MS.gene074275.t1 AT1G01720 33.083 133 73 6 4 130 7 129 2.21e-11 62.8
MS.gene074275.t1 AT4G10350 30.128 156 90 6 4 146 9 158 2.60e-11 62.8
MS.gene074275.t1 AT5G46590 30.573 157 87 7 4 145 6 155 2.63e-11 62.4
MS.gene074275.t1 AT3G29035 31.579 133 76 5 4 130 24 147 2.81e-11 62.4
MS.gene074275.t1 AT1G77450 28.750 160 88 6 4 147 10 159 4.43e-11 61.2
MS.gene074275.t1 AT5G13180 28.477 151 94 5 4 146 14 158 4.66e-11 61.2
MS.gene074275.t1 AT1G33280 29.487 156 88 6 4 146 8 154 5.04e-11 61.6
MS.gene074275.t1 AT3G18400 30.769 156 87 8 4 147 5 151 5.27e-11 61.6
MS.gene074275.t1 AT3G10500 30.769 156 88 6 4 146 9 157 6.68e-11 62.0

Find 55 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATATGGACTCTGAATT+TGG 0.191632 6.2:+13892452 MS.gene074275:CDS
GGCATTGTAAGACTGGATTT+TGG 0.240614 6.2:+13892124 MS.gene074275:CDS
CCATGGTTCTGACCTGATTA+AGG 0.246294 6.2:+13891990 MS.gene074275:CDS
TGAAGGAACTCAAAACTTAA+AGG 0.268346 6.2:+13892535 MS.gene074275:CDS
CCTCCTCGGCTCATCAGTTT+TGG 0.286371 6.2:-13892103 None:intergenic
CTGCCCGAGAGGGATGGATA+TGG 0.358342 6.2:+13892439 MS.gene074275:CDS
GAAGGAACTCAAAACTTAAA+GGG 0.389904 6.2:+13892536 MS.gene074275:CDS
GATTTGCTTCCACCTGCTGC+TGG 0.391149 6.2:+13891895 MS.gene074275:CDS
ACTCAAAACTTAAAGGGGTT+GGG 0.396296 6.2:+13892542 MS.gene074275:CDS
TGGATGCAGAAGGGAGTTGC+CGG 0.400199 6.2:+13892144 MS.gene074275:CDS
GCAATTCAAACGGATCATAT+TGG 0.403266 6.2:-13892026 None:intergenic
CCTTGTGTGAGGGAACAAAA+AGG 0.407725 6.2:-13892061 None:intergenic
ACAGGCTCAGCTCCTTAATC+AGG 0.409826 6.2:-13892002 None:intergenic
TGGATATGGACTCTGAATTT+GGG 0.437102 6.2:+13892453 MS.gene074275:CDS
AACTCAAAACTTAAAGGGGT+TGG 0.440825 6.2:+13892541 MS.gene074275:CDS
AAAACACGGCAAACAACAAA+AGG 0.449123 6.2:-13892413 None:intergenic
CTCAAAACTTAAAGGGGTTG+GGG 0.473201 6.2:+13892543 MS.gene074275:CDS
GTTGCCGGAGATATTATTGT+TGG 0.478019 6.2:+13892159 MS.gene074275:CDS
CCGAGGAGGCATTGTAAGAC+TGG 0.478926 6.2:+13892117 MS.gene074275:CDS
GAAGGGACGAAGCCAGCAGC+AGG 0.481551 6.2:-13891907 None:intergenic
TGTTGGAGCTGATGATGTGT+TGG 0.484498 6.2:+13892176 MS.gene074275:CDS
TGACTATGTTGTCTCCTACA+TGG 0.488176 6.2:+13893366 MS.gene074275:CDS
GCTAGTTCTAGTGCTGGTGC+TGG 0.493321 6.2:+13892565 MS.gene074275:CDS
AGCTCCAACAATAATATCTC+CGG 0.494190 6.2:-13892163 None:intergenic
TGGAGCTGATGATGTGTTGG+TGG 0.508683 6.2:+13892179 MS.gene074275:CDS
GCTGGTGCTGGTGCTGAGAA+AGG 0.512599 6.2:+13892577 MS.gene074275:CDS
GTTGGGGCTAGTTCTAGTGC+TGG 0.513052 6.2:+13892559 MS.gene074275:CDS
AGAACGCAATCAAAACTAGT+TGG 0.520035 6.2:+13892244 MS.gene074275:CDS
CAAACGGATCATATTGGTAC+AGG 0.526309 6.2:-13892020 None:intergenic
CTACATGGAAACTATGACGC+CGG 0.526642 6.2:+13893381 MS.gene074275:CDS
GAAGAGGTTCAGAATTTCCA+TGG 0.526667 6.2:+13891973 MS.gene074275:CDS
TCTGATGACAAGGCGAATGA+AGG 0.528665 6.2:+13892518 MS.gene074275:CDS
CCAGTCTTACAATGCCTCCT+CGG 0.543084 6.2:-13892117 None:intergenic
AGTCCATATCCATCCCTCTC+GGG 0.545419 6.2:-13892442 None:intergenic
GGGACGAAGCCAGCAGCAGG+TGG 0.547063 6.2:-13891904 None:intergenic
AGTGCATGCTTAAGTTGCTC+CGG 0.554035 6.2:-13893400 None:intergenic
GTCGATGACGGTGAAGCTGC+TGG 0.554541 6.2:+13892488 MS.gene074275:CDS
ACCGTCATCGACATCAGATA+AGG 0.555984 6.2:-13892477 None:intergenic
TGAGCAAGATGCAATTCAAA+CGG 0.561766 6.2:-13892036 None:intergenic
CAGTAAAACTCCCTTGTGTG+AGG 0.577220 6.2:-13892072 None:intergenic
CACTCAGGTTAACAACCCTC+AGG 0.577476 6.2:+13892281 MS.gene074275:CDS
TAACAAGGAGTTCGTCAGAA+GGG 0.582203 6.2:-13891924 None:intergenic
GAGTCCATATCCATCCCTCT+CGG 0.585457 6.2:-13892443 None:intergenic
CGGCGTCATAGTTTCCATGT+AGG 0.599569 6.2:-13893380 None:intergenic
GGAGCTGATGATGTGTTGGT+GGG 0.610668 6.2:+13892180 MS.gene074275:CDS
AGTAAAACTCCCTTGTGTGA+GGG 0.618109 6.2:-13892071 None:intergenic
TCCTTATCTGATGTCGATGA+CGG 0.618429 6.2:+13892476 MS.gene074275:CDS
AAGGAACTCAAAACTTAAAG+GGG 0.622436 6.2:+13892537 MS.gene074275:CDS
CCTTAATCAGGTCAGAACCA+TGG 0.626777 6.2:-13891990 None:intergenic
TGGCAAGGTAGTAGCTAACA+AGG 0.628366 6.2:-13891939 None:intergenic
CCAAAACTGATGAGCCGAGG+AGG 0.639982 6.2:+13892103 MS.gene074275:CDS
CTAACAAGGAGTTCGTCAGA+AGG 0.653784 6.2:-13891925 None:intergenic
TGGTGACGACTCTGATGACA+AGG 0.654982 6.2:+13892508 MS.gene074275:CDS
CTGCCAAAACTGATGAGCCG+AGG 0.655541 6.2:+13892100 MS.gene074275:CDS
GACTATGTATGAATACACTC+AGG 0.657680 6.2:+13892266 MS.gene074275:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTAAAGAAAAATAAAA+AGG - chr6.2:13893185-13893204 None:intergenic 10.0%
!!! TATTTTTTCATGTAATTTTA+TGG + chr6.2:13893262-13893281 MS.gene074275:intron 10.0%
!! TTTAATATAAATAATTGTGC+AGG + chr6.2:13892388-13892407 MS.gene074275:intron 15.0%
!! ATATGTATTTCAGTTTCTAT+TGG + chr6.2:13892759-13892778 MS.gene074275:intron 20.0%
!! TCGATGATTAATTTATGTAT+TGG + chr6.2:13892348-13892367 MS.gene074275:intron 20.0%
!!! AATGAAATATATTTTACCTG+AGG - chr6.2:13892637-13892656 None:intergenic 20.0%
!!! ATTTTTCTTTAAGTTTTGTG+TGG + chr6.2:13893189-13893208 MS.gene074275:intron 20.0%
!!! CATAATTTTTTACACAATTG+TGG - chr6.2:13892959-13892978 None:intergenic 20.0%
!!! CTCAATATTTATTTTGTCAT+CGG + chr6.2:13892664-13892683 MS.gene074275:intron 20.0%
!!! TATTCAAAACCTTTTTGTAT+TGG + chr6.2:13892844-13892863 MS.gene074275:intron 20.0%
!!! TTTTTCATGTAATTTTATGG+TGG + chr6.2:13893265-13893284 MS.gene074275:intron 20.0%
! CAAAAACTACCAATACAAAA+AGG - chr6.2:13892856-13892875 None:intergenic 25.0%
! CATAAATAATCCAAACACAA+TGG - chr6.2:13892905-13892924 None:intergenic 25.0%
! GTTTGATATTGATGTTTATC+AGG + chr6.2:13893324-13893343 MS.gene074275:intron 25.0%
!! AATAAAAAGGACATGTTTTG+AGG - chr6.2:13893172-13893191 None:intergenic 25.0%
!! TCTCTCTTCTTTTTCTATAT+AGG + chr6.2:13892210-13892229 MS.gene074275:CDS 25.0%
!!! TACAAAAAGGTTTTGAATAG+CGG - chr6.2:13892843-13892862 None:intergenic 25.0%
AAAATACCTCCATCATATGT+GGG + chr6.2:13892796-13892815 MS.gene074275:intron 30.0%
AACTCAATTCATTCATGTGA+TGG + chr6.2:13893050-13893069 MS.gene074275:intron 30.0%
AAGGAACTCAAAACTTAAAG+GGG + chr6.2:13892537-13892556 MS.gene074275:CDS 30.0%
ACAATTGTGGATGTAGAATT+CGG - chr6.2:13892946-13892965 None:intergenic 30.0%
ATCGATGAAATAACGAACAT+AGG - chr6.2:13892333-13892352 None:intergenic 30.0%
GAAGGAACTCAAAACTTAAA+GGG + chr6.2:13892536-13892555 MS.gene074275:CDS 30.0%
TAAAATACCTCCATCATATG+TGG + chr6.2:13892795-13892814 MS.gene074275:intron 30.0%
TCGATGAAATAACGAACATA+GGG - chr6.2:13892332-13892351 None:intergenic 30.0%
TGAAGGAACTCAAAACTTAA+AGG + chr6.2:13892535-13892554 MS.gene074275:CDS 30.0%
TGTAAAATTCAGTTGCAAAG+AGG - chr6.2:13893031-13893050 None:intergenic 30.0%
! AATATATTTTACCTGAGGAG+TGG - chr6.2:13892632-13892651 None:intergenic 30.0%
!!! AACCTCTTCATTGTTTTTGT+TGG - chr6.2:13891962-13891981 None:intergenic 30.0%
AAAACACGGCAAACAACAAA+AGG - chr6.2:13892416-13892435 None:intergenic 35.0%
AACTCAAAACTTAAAGGGGT+TGG + chr6.2:13892541-13892560 MS.gene074275:CDS 35.0%
ACTCAAAACTTAAAGGGGTT+GGG + chr6.2:13892542-13892561 MS.gene074275:CDS 35.0%
AGAACGCAATCAAAACTAGT+TGG + chr6.2:13892244-13892263 MS.gene074275:CDS 35.0%
AGCTCCAACAATAATATCTC+CGG - chr6.2:13892166-13892185 None:intergenic 35.0%
ATGGATATGGACTCTGAATT+TGG + chr6.2:13892452-13892471 MS.gene074275:CDS 35.0%
GACTATGTATGAATACACTC+AGG + chr6.2:13892266-13892285 MS.gene074275:CDS 35.0%
GCAATTCAAACGGATCATAT+TGG - chr6.2:13892029-13892048 None:intergenic 35.0%
TGAGCAAGATGCAATTCAAA+CGG - chr6.2:13892039-13892058 None:intergenic 35.0%
TGCCAACAAAAACAATGAAG+AGG + chr6.2:13891957-13891976 MS.gene074275:CDS 35.0%
TGGATATGGACTCTGAATTT+GGG + chr6.2:13892453-13892472 MS.gene074275:CDS 35.0%
TGGATGTAGAATTCGGTAAT+TGG - chr6.2:13892939-13892958 None:intergenic 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG - chr6.2:13891957-13891976 None:intergenic 35.0%
!!! TAGTTTTGATTGCGTTCTGA+GGG - chr6.2:13892242-13892261 None:intergenic 35.0%
AGGTGATGTATCTCGTTTCA+TGG + chr6.2:13892597-13892616 MS.gene074275:intron 40.0%
AGTAAAACTCCCTTGTGTGA+GGG - chr6.2:13892074-13892093 None:intergenic 40.0%
ATATTGTGGCCCACATATGA+TGG - chr6.2:13892808-13892827 None:intergenic 40.0%
CAAACGGATCATATTGGTAC+AGG - chr6.2:13892023-13892042 None:intergenic 40.0%
CCAAACACAATGGAGCTATT+TGG - chr6.2:13892895-13892914 None:intergenic 40.0%
CCAAATAGCTCCATTGTGTT+TGG + chr6.2:13892892-13892911 MS.gene074275:intron 40.0%
CTCAAAACTTAAAGGGGTTG+GGG + chr6.2:13892543-13892562 MS.gene074275:CDS 40.0%
GAAGAGGTTCAGAATTTCCA+TGG + chr6.2:13891973-13891992 MS.gene074275:CDS 40.0%
GGCCACAATATCAATGATAG+GGG + chr6.2:13892817-13892836 MS.gene074275:intron 40.0%
GGGCCACAATATCAATGATA+GGG + chr6.2:13892816-13892835 MS.gene074275:intron 40.0%
GTTGCCGGAGATATTATTGT+TGG + chr6.2:13892159-13892178 MS.gene074275:CDS 40.0%
TAACAAGGAGTTCGTCAGAA+GGG - chr6.2:13891927-13891946 None:intergenic 40.0%
TCCTTATCTGATGTCGATGA+CGG + chr6.2:13892476-13892495 MS.gene074275:CDS 40.0%
TGACTATGTTGTCTCCTACA+TGG + chr6.2:13893366-13893385 MS.gene074275:CDS 40.0%
TGGGCCACAATATCAATGAT+AGG + chr6.2:13892815-13892834 MS.gene074275:intron 40.0%
TTCCCAAATGACATACCTGA+GGG - chr6.2:13892299-13892318 None:intergenic 40.0%
TTTCCCAAATGACATACCTG+AGG - chr6.2:13892300-13892319 None:intergenic 40.0%
! AACCCTCAGGTATGTCATTT+GGG + chr6.2:13892294-13892313 MS.gene074275:intron 40.0%
! ACTGGATTTTGGATGCAGAA+GGG + chr6.2:13892135-13892154 MS.gene074275:CDS 40.0%
! CTTTTTGTTCCCTCACACAA+GGG + chr6.2:13892062-13892081 MS.gene074275:CDS 40.0%
! GGCATTGTAAGACTGGATTT+TGG + chr6.2:13892124-13892143 MS.gene074275:CDS 40.0%
!!! AGTTTTGATTGCGTTCTGAG+GGG - chr6.2:13892241-13892260 None:intergenic 40.0%
!!! CTAGTTTTGATTGCGTTCTG+AGG - chr6.2:13892243-13892262 None:intergenic 40.0%
ACCGTCATCGACATCAGATA+AGG - chr6.2:13892480-13892499 None:intergenic 45.0%
CAACCCTCAGGTATGTCATT+TGG + chr6.2:13892293-13892312 MS.gene074275:intron 45.0%
CAGTAAAACTCCCTTGTGTG+AGG - chr6.2:13892075-13892094 None:intergenic 45.0%
CCTTAATCAGGTCAGAACCA+TGG - chr6.2:13891993-13892012 None:intergenic 45.0%
CCTTGTGTGAGGGAACAAAA+AGG - chr6.2:13892064-13892083 None:intergenic 45.0%
CTAACAAGGAGTTCGTCAGA+AGG - chr6.2:13891928-13891947 None:intergenic 45.0%
CTACATGGAAACTATGACGC+CGG + chr6.2:13893381-13893400 MS.gene074275:CDS 45.0%
GGCCCCTATCATTGATATTG+TGG - chr6.2:13892822-13892841 None:intergenic 45.0%
TCTGATGACAAGGCGAATGA+AGG + chr6.2:13892518-13892537 MS.gene074275:CDS 45.0%
TGGCAAGGTAGTAGCTAACA+AGG - chr6.2:13891942-13891961 None:intergenic 45.0%
! AGTGCATGCTTAAGTTGCTC+CGG - chr6.2:13893403-13893422 None:intergenic 45.0%
! CCTTTTTGTTCCCTCACACA+AGG + chr6.2:13892061-13892080 MS.gene074275:CDS 45.0%
! GACTGGATTTTGGATGCAGA+AGG + chr6.2:13892134-13892153 MS.gene074275:CDS 45.0%
! TGTTGGAGCTGATGATGTGT+TGG + chr6.2:13892176-13892195 MS.gene074275:CDS 45.0%
!! CCATGGTTCTGACCTGATTA+AGG + chr6.2:13891990-13892009 MS.gene074275:CDS 45.0%
!! TAAAAAATTATGTTTAATTA+CGG + chr6.2:13892967-13892986 MS.gene074275:intron 5.0%
ACAGGCTCAGCTCCTTAATC+AGG - chr6.2:13892005-13892024 None:intergenic 50.0%
AGTCCATATCCATCCCTCTC+GGG - chr6.2:13892445-13892464 None:intergenic 50.0%
CACTCAGGTTAACAACCCTC+AGG + chr6.2:13892281-13892300 MS.gene074275:CDS 50.0%
CCAGTCTTACAATGCCTCCT+CGG - chr6.2:13892120-13892139 None:intergenic 50.0%
CGGCGTCATAGTTTCCATGT+AGG - chr6.2:13893383-13893402 None:intergenic 50.0%
CTCTCGGGCAGTCAAAAACA+CGG - chr6.2:13892430-13892449 None:intergenic 50.0%
GAGTCCATATCCATCCCTCT+CGG - chr6.2:13892446-13892465 None:intergenic 50.0%
TTGTGGCCCACATATGATGG+AGG - chr6.2:13892805-13892824 None:intergenic 50.0%
! GGAGCTGATGATGTGTTGGT+GGG + chr6.2:13892180-13892199 MS.gene074275:CDS 50.0%
! TGGAGCTGATGATGTGTTGG+TGG + chr6.2:13892179-13892198 MS.gene074275:CDS 50.0%
! TGGTGACGACTCTGATGACA+AGG + chr6.2:13892508-13892527 MS.gene074275:CDS 50.0%
!! GTGTTTTTGACTGCCCGAGA+GGG + chr6.2:13892429-13892448 MS.gene074275:CDS 50.0%
CCAAAACTGATGAGCCGAGG+AGG + chr6.2:13892103-13892122 MS.gene074275:CDS 55.0%
CTGCCAAAACTGATGAGCCG+AGG + chr6.2:13892100-13892119 MS.gene074275:CDS 55.0%
GGCTACTCAATCCACTCCTC+AGG + chr6.2:13892618-13892637 MS.gene074275:intron 55.0%
TGGATGCAGAAGGGAGTTGC+CGG + chr6.2:13892144-13892163 MS.gene074275:CDS 55.0%
! CCTCCTCGGCTCATCAGTTT+TGG - chr6.2:13892106-13892125 None:intergenic 55.0%
! GATTTGCTTCCACCTGCTGC+TGG + chr6.2:13891895-13891914 MS.gene074275:CDS 55.0%
!! CCGAGGAGGCATTGTAAGAC+TGG + chr6.2:13892117-13892136 MS.gene074275:CDS 55.0%
!! CGTGTTTTTGACTGCCCGAG+AGG + chr6.2:13892428-13892447 MS.gene074275:CDS 55.0%
!! GCTAGTTCTAGTGCTGGTGC+TGG + chr6.2:13892565-13892584 MS.gene074275:CDS 55.0%
!! GTTGGGGCTAGTTCTAGTGC+TGG + chr6.2:13892559-13892578 MS.gene074275:CDS 55.0%
!! TTTTGACTGCCCGAGAGGGA+TGG + chr6.2:13892433-13892452 MS.gene074275:CDS 55.0%
CTGCCCGAGAGGGATGGATA+TGG + chr6.2:13892439-13892458 MS.gene074275:CDS 60.0%
! GTCGATGACGGTGAAGCTGC+TGG + chr6.2:13892488-13892507 MS.gene074275:CDS 60.0%
!! GCTGGTGCTGGTGCTGAGAA+AGG + chr6.2:13892577-13892596 MS.gene074275:CDS 60.0%
GAAGGGACGAAGCCAGCAGC+AGG - chr6.2:13891910-13891929 None:intergenic 65.0%
GGGACGAAGCCAGCAGCAGG+TGG - chr6.2:13891907-13891926 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 13891892 13893444 13891892 ID=MS.gene074275
chr6.2 mRNA 13891892 13893444 13891892 ID=MS.gene074275.t1;Parent=MS.gene074275
chr6.2 exon 13891892 13892302 13891892 ID=MS.gene074275.t1.exon1;Parent=MS.gene074275.t1
chr6.2 CDS 13891892 13892302 13891892 ID=cds.MS.gene074275.t1;Parent=MS.gene074275.t1
chr6.2 exon 13892410 13892598 13892410 ID=MS.gene074275.t1.exon2;Parent=MS.gene074275.t1
chr6.2 CDS 13892410 13892598 13892410 ID=cds.MS.gene074275.t1;Parent=MS.gene074275.t1
chr6.2 exon 13893346 13893444 13893346 ID=MS.gene074275.t1.exon3;Parent=MS.gene074275.t1
chr6.2 CDS 13893346 13893444 13893346 ID=cds.MS.gene074275.t1;Parent=MS.gene074275.t1
Gene Sequence

>MS.gene074275

ATGGATTTGCTTCCACCTGCTGCTGGCTTCGTCCCTTCTGACGAACTCCTTGTTAGCTACTACCTTGCCAACAAAAACAATGAAGAGGTTCAGAATTTCCATGGTTCTGACCTGATTAAGGAGCTGAGCCTGTACCAATATGATCCGTTTGAATTGCATCTTGCTCAGTCCTTTTTGTTCCCTCACACAAGGGAGTTTTACTGCTTCACTGCCAAAACTGATGAGCCGAGGAGGCATTGTAAGACTGGATTTTGGATGCAGAAGGGAGTTGCCGGAGATATTATTGTTGGAGCTGATGATGTGTTGGTGGGAAAGAAGTCTCTCTTCTTTTTCTATATAGGAAATTCCCCTCAGAACGCAATCAAAACTAGTTGGACTATGTATGAATACACTCAGGTTAACAACCCTCAGGTATGTCATTTGGGAAAACTAACTTTCCCTATGTTCGTTATTTCATCGATGATTAATTTATGTATTGGTAACGACTAACTATTTTTTTAATATAAATAATTGTGCAGGCTCCTTTTGTTGTTTGCCGTGTTTTTGACTGCCCGAGAGGGATGGATATGGACTCTGAATTTGGGTCCTTATCTGATGTCGATGACGGTGAAGCTGCTGGTGACGACTCTGATGACAAGGCGAATGAAGGAACTCAAAACTTAAAGGGGTTGGGGCTAGTTCTAGTGCTGGTGCTGGTGCTGAGAAAGGTGATGTATCTCGTTTCATGGCTACTCAATCCACTCCTCAGGTAAAATATATTTCATTTTGATATCTCAATATTTATTTTGTCATCGGCAACAATTATAAAATGCTTAAATTTGTCTGAAATCAAAATTCAAAATTGTTTTTTGTCTGTTTTTGTTTATTATATGTATTTCAGTTTCTATTGGACATAAGTTTTAATAAAATACCTCCATCATATGTGGGCCACAATATCAATGATAGGGGCCGCTATTCAAAACCTTTTTGTATTGGTAGTTTTTGTGATTGATGTTTAAATCCAAATAGCTCCATTGTGTTTGGATTATTTATGTTTTGCAGTTGCCAATTACCGAATTCTACATCCACAATTGTGTAAAAAATTATGTTTAATTACGGAAGTCAACATTGACAGTTAACTAGTTAATGTTGTTGATCCTCTTTGCAACTGAATTTTACAACTCAATTCATTCATGTGATGGTTTTTTTTTTATTTTGATCAATTTTATTGAATGTATCACTCTGCACATATTTTTTTTTCTTTTTTTCTTTTTTGTGTGTAGAAATTAAGTGATGATCCTCAAAACATGTCCTTTTTATTTTTCTTTAAGTTTTGTGTGGTATTAAATTCATTATCATTGTTATAATATCATCATCACTTTTTGACAAAGTATTTTTTCATGTAATTTTATGGTGGAGAAAAGAAAGTTTTGCTGAAATATTGAATTTCTTTGTTTGATATTGATGTTTATCAGGCGAGTTATACTGCATTTCTTGACTATGTTGTCTCCTACATGGAAACTATGACGCCGGAGCAACTTAAGCATGCACTTCTAGCTGAAGATTTTATTTAA
Protein sequence

>MS.gene074275.t1

MDLLPPAAGFVPSDELLVSYYLANKNNEEVQNFHGSDLIKELSLYQYDPFELHLAQSFLFPHTREFYCFTAKTDEPRRHCKTGFWMQKGVAGDIIVGADDVLVGKKSLFFFYIGNSPQNAIKTSWTMYEYTQVNNPQAPFVVCRVFDCPRGMDMDSEFGSLSDVDDGEAAGDDSDDKANEGTQNLKGLGLVLVLVLVLRKASYTAFLDYVVSYMETMTPEQLKHALLAEDFI