AlfalfaGEDB | MS.gene074375

M. sativa cultivar XinJiangDaYe / MS.gene074375

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074375.t1	XP_013461023.1	89.4	643	16	1	1	591	1	643	1.20E-283	985.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074375.t1	Q9M9C5	38.9	285	161	5	309	580	353	637	5.5e-51	203.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074375.t1	A0A072UZR6	89.4	643	16	1	1	591	1	643	8.7e-284	985.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074375.t1	MTR_3g078250	88.958	643	19	1	1	591	1	643	0.0	1134
MS.gene074375.t1	MTR_2g023150	57.836	268	105	2	323	590	1	260	3.02e-103	313
MS.gene074375.t1	MTR_3g093710	33.111	601	344	19	30	585	33	620	1.52e-84	276
MS.gene074375.t1	MTR_5g075630	31.833	622	373	20	8	590	31	640	2.27e-80	266
MS.gene074375.t1	MTR_1g061590	30.861	674	336	21	11	582	4	649	2.02e-77	259
MS.gene074375.t1	MTR_8g099195	31.208	596	348	17	30	583	24	599	5.98e-76	254
MS.gene074375.t1	MTR_5g078080	31.980	591	331	17	51	585	46	621	4.85e-71	241
MS.gene074375.t1	MTR_5g009660	30.682	616	333	19	14	583	9	576	1.33e-70	239
MS.gene074375.t1	MTR_1g028890	29.933	598	330	16	18	580	14	557	5.15e-70	237
MS.gene074375.t1	MTR_1g110280	41.869	289	148	7	311	580	351	638	1.97e-62	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074375.t1	AT1G64210	31.570	605	366	14	8	585	4	587	7.96e-81	265
MS.gene074375.t1	AT5G24100	29.375	640	348	15	1	572	1	604	9.23e-76	253
MS.gene074375.t1	AT2G36570	31.479	629	302	19	55	582	48	648	2.32e-73	248
MS.gene074375.t1	AT3G02880	29.853	613	363	18	12	572	11	608	8.13e-72	243
MS.gene074375.t1	AT5G05160	30.643	607	349	21	31	584	34	621	2.26e-71	242
MS.gene074375.t1	AT1G48480	30.769	598	322	20	51	572	54	635	2.91e-68	234
MS.gene074375.t1	AT5G35390	28.639	632	363	17	18	583	23	632	6.68e-68	233
MS.gene074375.t1	AT4G23740	29.421	622	337	18	22	577	22	607	7.10e-68	232
MS.gene074375.t1	AT4G23740	29.421	622	337	18	22	577	22	607	7.10e-68	232
MS.gene074375.t1	AT3G08680	28.594	647	346	23	1	572	2	607	8.34e-66	227

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Find 113 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCATGGAAGCCTATACA+AGG	0.620276	3.4:-74943066	MS.gene074375:CDS
AAAGTGGACACTCTCTTGAT+TGG	0.455074	3.4:-74942476	MS.gene074375:CDS
AAATCTCGATCATCTGTCAA+AGG	0.570198	3.4:+74941930	None:intergenic
AAATGAGTCTAAAACAAATC+TGG	0.440308	3.4:-74944204	MS.gene074375:CDS
AACATGAAGAGGCTACCATT+TGG	0.521071	3.4:+74942867	None:intergenic
AACCATATTCGGAAGGTTTC+CGG	0.222168	3.4:+74943730	None:intergenic
AACCCACAAATAAGCGAATA+TGG	0.383373	3.4:-74942327	MS.gene074375:CDS
AAGAATGGTGAACTTGTTGC+AGG	0.483012	3.4:-74942055	MS.gene074375:CDS
AAGAATTGGTTTAATGGCCT+TGG	0.330656	3.4:-74943227	MS.gene074375:CDS
AAGGCTGAGGTATTGAAGAG+AGG	0.541754	3.4:+74943913	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGGAGAAATCAAAATC+AGG	+	chr3.4:74942494-74942513	None:intergenic	30.0%
AATAAGCGAATATGGTCTAA+TGG	-	chr3.4:74943822-74943841	MS.gene074375:CDS	30.0%
ACTATGTAGCCTGAATAAAT+TGG	+	chr3.4:74942716-74942735	None:intergenic	30.0%
AGAGCTGATATATATTCCTT+TGG	-	chr3.4:74943919-74943938	MS.gene074375:CDS	30.0%
ATGACCAAAAATAGAGAAAC+AGG	-	chr3.4:74942788-74942807	MS.gene074375:intron	30.0%
ATTGGCAAATCATCAAGAAA+TGG	+	chr3.4:74942698-74942717	None:intergenic	30.0%
CTCATACTTAGCTTATCATT+TGG	+	chr3.4:74944138-74944157	None:intergenic	30.0%
CTGAGTCTAAATTTCAATTC+AGG	+	chr3.4:74943595-74943614	None:intergenic	30.0%
CTTCTTACTTTGCATTTCAA+TGG	+	chr3.4:74943354-74943373	None:intergenic	30.0%
GACGTTAAAAACTTCAAAGT+TGG	+	chr3.4:74942510-74942529	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	74941939	74944224	74941939	ID=MS.gene074375
chr3.4	mRNA	74941939	74944224	74941939	ID=MS.gene074375.t1;Parent=MS.gene074375
chr3.4	exon	74943594	74944224	74943594	ID=MS.gene074375.t1.exon1;Parent=MS.gene074375.t1
chr3.4	CDS	74943594	74944224	74943594	ID=cds.MS.gene074375.t1;Parent=MS.gene074375.t1
chr3.4	exon	74942859	74943437	74942859	ID=MS.gene074375.t1.exon2;Parent=MS.gene074375.t1
chr3.4	CDS	74942859	74943437	74942859	ID=cds.MS.gene074375.t1;Parent=MS.gene074375.t1
chr3.4	exon	74941939	74942504	74941939	ID=MS.gene074375.t1.exon3;Parent=MS.gene074375.t1
chr3.4	CDS	74941939	74942504	74941939	ID=cds.MS.gene074375.t1;Parent=MS.gene074375.t1

Gene Sequence

>MS.gene074375

ATGAGTCTAAAACAAATCTGGTTCTGGACAGTACTCACTTTTCTGTTTCCGTTTTTTCTAAAGACCAATTCAGAATCAGAAAATGTCAGAAAAGCCCTTGTCAAATTCATGCATCAACTTGAACCACCCGATCAGAATTCCATGTGGGGTTGGAACCTCACATCAGATCCATGCACTCATAACTGGCACGGCGTAACTTGCTACGCAAACAACCAATACATTAAGACTATAGTTCTTGACAACCTTTATTTCACCGGTGTTCTAGACGCTACTTCTCTTTGCATTGCTACCTCTCTTCAATACCTCAGCCTTAACAACAATTACTTACACGGTTTTATATCGGAGGATATAAAAGACTGTAAGTTCTTGACACACTTGCTTCTTAGTGGTAACAAATTCTCTGGCAATCTTCCTGCTTCCATTCCTCAACTACTTAACATGAAGCGCCTTCATGTTTCGGACAATCTCTTCACCGGAAACCTTCCGAATATGGTTAATGTTACAAGCTTGATATCTTTTTTAGCACAAAACAACAACTTCACCGGTCAGATTCCTGATTTTGATTTCTCCAACTTTGAAGTTTTTAACGTCTCTAACAACAATTTACGTGGTCCTATTCCTGATGTTGGAGGTAGATTTAATGCAGATAGCTTTTATGGTAATCCTAATTTATGTGGAAAACCAATTTCAAACTCGTCATGTCCGCCTCCACCACCACCTCCTCCTCCAATCATTATAAAAGACAAAAAGAAAAATCCATTTCTTGATGATTTGCCAATTTATTCAGGCTACATAGTTATTGGTTTAATTTTCATAATTTTCTTGATCTTCAAGTTGTCAAGAAAATGCATGACCAAAAATAGAGAAACAGGATTAGATCATGTTGAAAAGAAGGACATGTCACAAGACACTAGCGGTGGCGTTGTTATTGTTGGTGGTGAAAAGCTTAGTGAGATATTAAATTCAAATGGATCAAAGAATTGGTTTAATGGCCTTGGAGTTAGATCAGAGTATTCTATGACATCTATGGAAAGTGGAGTGACTACATCAGGTCTTGTTCTTCTTTCAAGTAGAAAGCTTAGGGGATTGCAATTTGAGGATTTGTTAAGTGCTCCTGCTGAATTGATTAGGAGAGGAAAGCATGGAAGCCTATACAAGGTTATGCTAGATAATGGTGTGCTTTTGGCTGTGAAGAGGATCAAGGATTGGGGGATTTCGAAGCATGAATTCGAGAGAAGGATGAACTTGATAGCTCAAGTGAAGCATACTCTTGTAATGTCACCTGTTGCATACTATTGCTCTCAGCAAGAGAAGCTTCTGGCGTATGAATATCTTCCAAATGGTAGCCTCTTCATGTTGCTCTATGGTAAGTTGCTAATTAATTATTAAGTTGTGTTACTGTGTTATTACATCCATTGAAATGCAAAGTAAGAAGCTAGTGTACGAAGTTTTATGCACTTATCTATAAGATATTTATATAGTCTAAGAGACAATATAGTCAAACTATTTTTATATAAGCTATAAGTTGTTTTTACAAGTTATGGACATGTAATAAGTTGTTTGCATAAGCTCTACCAAACACTTTATCAAGTGCTTATGTCAATAAATAAGTTTATAAAGTAAGCAATTAATTTGTTAGCCTATAAGCACATGCCTGAATTGAAATTTAGACTCAGAATCAACGTAGCCGAATATTTGTACTCACCTTTAATTTCTTCAGGATCTCAAAGTGGACACTCTCTTGATTGGAGGAGCAGACTAGACGTTGCTGCTAAGATCGCTGAAGCTTTGGCCTATATGCATGAAGAGCTTGGTGAGAGTGGAATAGCACATGGTAACTTAAAATCAAGCAATATTCTGTTTGACAAGAATATGAACCCACAAATAAGCGAATATGGTCTAATGGTCGTGGAAAATCAAGGCGTCATCTCTCATATCAGAAGCCGCAGAAACAAAAATATGTCTGCAGCAGCCACCTTCAGAGCTGATATATATTCCTTTGGTGTGATACTTCTCGAACTCCTGACAGGAAAAGTAGTTAAAAATGATGGATTTGATTTGGTTAAATGGGTGAATTCAGTGATCAGTGAGGAATGGACTGCAGAAGTTTTTGATAGGTCTCTAATCTCACAAGGTGCTTCTGAAGAAAGAATGGTGAACTTGTTGCAGGTGGCACTAAAATGCATCAATCCTTCTCCAAATGATAAGCTAAGTATGAGTCAAGTGGCGCTCATCACAAATGCGTTGAAAGATGAAGACGAAAAATCTGTATCCTTTGACAGATGA

Protein sequence

>MS.gene074375.t1

MSLKQIWFWTVLTFLFPFFLKTNSESENVRKALVKFMHQLEPPDQNSMWGWNLTSDPCTHNWHGVTCYANNQYIKTIVLDNLYFTGVLDATSLCIATSLQYLSLNNNYLHGFISEDIKDCKFLTHLLLSGNKFSGNLPASIPQLLNMKRLHVSDNLFTGNLPNMVNVTSLISFLAQNNNFTGQIPDFDFSNFEVFNVSNNNLRGPIPDVGGYIVIGLIFIIFLIFKLSRKCMTKNRETGLDHVEKKDMSQDTSGGVVIVGGEKLSEILNSNGSKNWFNGLGVRSEYSMTSMESGVTTSGLVLLSSRKLRGLQFEDLLSAPAELIRRGKHGSLYKVMLDNGVLLAVKRIKDWGISKHEFERRMNLIAQVKHTLVMSPVAYYCSQQEKLLAYEYLPNGSLFMLLYGSQSGHSLDWRSRLDVAAKIAEALAYMHEELGESGIAHGNLKSSNILFDKNMNPQISEYGLMVVENQGVISHIRSRRNKNMSAAATFRADIYSFGVILLELLTGKVVKNDGFDLVKWVNSVISEEWTAEVFDRSLISQGASEERMVNLLQVALKCINPSPNDKLSMSQVALITNALKDEDEKSVSFDR