AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07627

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07627.t1 MTR_2g099990 55.667 300 83 5 9 293 56 320 1.38e-106 325
MS.gene07627.t1 MTR_8g017210 54.294 326 119 7 9 321 72 380 1.95e-104 321
MS.gene07627.t1 MTR_2g090745 52.941 323 117 7 9 297 17 338 5.77e-99 304
MS.gene07627.t1 MTR_1g112270 82.353 153 27 0 9 161 54 206 3.27e-98 306
MS.gene07627.t1 MTR_2g099990 54.545 286 80 5 23 293 1 251 4.47e-98 300
MS.gene07627.t1 MTR_1g112270 82.895 152 26 0 10 161 66 217 5.49e-98 306
MS.gene07627.t1 MTR_1g094115 82.000 150 27 0 9 158 57 206 1.24e-96 301
MS.gene07627.t1 MTR_4g059870 81.935 155 27 1 9 162 48 202 1.74e-96 300
MS.gene07627.t1 MTR_1g016010 49.840 313 107 6 9 315 51 319 1.90e-94 293
MS.gene07627.t1 MTR_2g093960 77.419 155 34 1 9 162 42 196 3.19e-92 286
MS.gene07627.t1 MTR_1g094115 81.818 132 24 0 27 158 58 189 5.13e-85 271
MS.gene07627.t1 MTR_2g017720 76.316 114 22 1 9 122 323 431 9.12e-55 189
MS.gene07627.t1 MTR_3g102000 65.657 99 27 2 26 120 36 131 2.29e-38 139
MS.gene07627.t1 MTR_5g030560 74.000 50 13 0 4 53 11 60 7.17e-21 87.0
MS.gene07627.t1 MTR_1g093095 33.537 164 86 7 22 164 109 270 9.96e-20 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07627.t1 AT3G50700 54.180 323 118 6 9 310 44 357 2.54e-106 323
MS.gene07627.t1 AT1G03840 85.806 155 22 0 9 163 51 205 4.04e-100 309
MS.gene07627.t1 AT1G03840 85.161 155 23 0 9 163 49 203 2.13e-99 307
MS.gene07627.t1 AT5G44160 72.632 190 44 2 8 189 7 196 1.25e-98 303
MS.gene07627.t1 AT5G66730 84.314 153 24 0 9 161 42 194 1.53e-98 305
MS.gene07627.t1 AT5G44160 73.016 189 43 2 9 189 47 235 5.47e-98 302
MS.gene07627.t1 AT1G55110 83.871 155 24 1 9 162 73 227 2.55e-97 300
MS.gene07627.t1 AT1G55110 83.871 155 24 1 9 162 73 227 2.55e-97 300
MS.gene07627.t1 AT1G55110 83.871 155 24 1 9 162 73 227 2.55e-97 300
MS.gene07627.t1 AT1G14580 81.699 153 28 0 9 161 63 215 3.47e-97 300
MS.gene07627.t1 AT1G14580 81.699 153 28 0 9 161 63 215 3.47e-97 300
MS.gene07627.t1 AT1G14580 81.699 153 28 0 9 161 77 229 5.80e-97 300
MS.gene07627.t1 AT2G02070 81.529 157 29 0 12 168 65 221 6.58e-97 304
MS.gene07627.t1 AT2G02070 81.529 157 29 0 12 168 65 221 6.58e-97 304
MS.gene07627.t1 AT2G02080 81.046 153 29 0 9 161 64 216 1.25e-96 300
MS.gene07627.t1 AT2G02080 81.046 153 29 0 9 161 64 216 1.25e-96 300
MS.gene07627.t1 AT2G02080 81.046 153 29 0 9 161 64 216 1.25e-96 300
MS.gene07627.t1 AT2G02080 81.046 153 29 0 9 161 64 216 1.25e-96 300
MS.gene07627.t1 AT5G03150 83.871 155 24 1 9 162 63 217 1.86e-96 300
MS.gene07627.t1 AT3G45260 81.818 154 27 1 9 161 49 202 3.53e-95 295
MS.gene07627.t1 AT3G45260 81.818 154 27 1 9 161 49 202 3.53e-95 295
MS.gene07627.t1 AT3G13810 83.766 154 24 1 9 161 61 214 1.75e-94 294
MS.gene07627.t1 AT3G13810 83.766 154 24 1 9 161 75 228 2.62e-94 294
MS.gene07627.t1 AT3G13810 83.766 154 24 1 9 161 80 233 2.80e-94 294
MS.gene07627.t1 AT3G13810 83.766 154 24 1 9 161 80 233 2.80e-94 294
MS.gene07627.t1 AT3G13810 81.875 160 27 2 4 161 61 220 8.37e-94 293
MS.gene07627.t1 AT3G13810 81.875 160 27 2 4 161 75 234 1.07e-93 293
MS.gene07627.t1 AT4G02670 75.439 171 38 2 9 175 63 233 1.30e-93 289
MS.gene07627.t1 AT4G02670 75.439 171 38 2 9 175 65 235 1.47e-93 289
MS.gene07627.t1 AT5G60470 75.926 162 36 2 3 161 37 198 5.64e-92 286
MS.gene07627.t1 AT5G60470 78.571 154 32 1 9 161 54 207 1.02e-91 286
MS.gene07627.t1 AT5G60470 78.571 154 32 1 9 161 50 203 1.17e-91 286
MS.gene07627.t1 AT2G02080 81.295 139 26 0 23 161 1 139 6.03e-89 278
MS.gene07627.t1 AT2G02080 81.295 139 26 0 23 161 1 139 6.03e-89 278
MS.gene07627.t1 AT1G68130 67.123 146 46 2 9 152 51 196 4.30e-69 226
MS.gene07627.t1 AT2G01940 66.216 148 48 2 9 154 54 201 9.51e-69 226
MS.gene07627.t1 AT1G25250 65.306 147 48 2 9 152 20 166 5.78e-68 221
MS.gene07627.t1 AT1G25250 65.306 147 48 2 9 152 43 189 7.09e-68 222
MS.gene07627.t1 AT2G01940 65.101 149 49 3 9 154 54 202 8.72e-65 216
MS.gene07627.t1 AT1G68130 64.545 110 37 2 45 152 1 110 2.36e-46 164
MS.gene07627.t1 AT2G01940 64.286 112 38 2 45 154 1 112 3.63e-46 164
MS.gene07627.t1 AT1G25250 62.162 111 39 2 45 152 1 111 8.25e-45 159
MS.gene07627.t1 AT5G22890 36.000 150 82 4 13 148 202 351 1.65e-23 102
MS.gene07627.t1 AT1G34370 33.333 153 88 3 13 151 19 171 3.82e-23 99.4
MS.gene07627.t1 AT1G34370 33.333 153 88 3 13 151 229 381 1.09e-22 101
MS.gene07627.t1 AT1G34370 33.333 153 88 3 13 151 229 381 1.09e-22 101
MS.gene07627.t1 AT3G20880 37.143 140 76 6 22 151 250 387 7.62e-20 92.0
MS.gene07627.t1 AT1G51220 33.775 151 84 5 10 151 166 309 1.15e-19 90.5
MS.gene07627.t1 AT3G57670 34.437 151 83 5 10 151 205 348 3.35e-19 89.7
MS.gene07627.t1 AT1G13290 35.862 145 79 7 22 154 95 237 6.26e-19 87.8
MS.gene07627.t1 AT1G08290 33.540 161 88 7 8 151 154 312 1.26e-17 84.3
MS.gene07627.t1 AT1G34790 30.968 155 95 5 7 151 124 276 4.64e-17 82.0

Find 96 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGTCCTAATCATGTTTC+TGG 0.126378 7.1:+5507240 MS.gene07627:CDS
ATTATCTCCAACAACATTAA+TGG 0.225501 7.1:+5505988 MS.gene07627:CDS
TGCATTTGGCTTTGCAAGTT+TGG 0.264117 7.1:-5506820 None:intergenic
CAGCAATGGAGAAATCAATT+TGG 0.264385 7.1:+5507676 MS.gene07627:CDS
ATTGCTGTACCTAGAAAATA+TGG 0.277676 7.1:-5506350 None:intergenic
GTCCATGATTTCTTGGGAAT+TGG 0.293303 7.1:+5507543 MS.gene07627:CDS
GGCAACAGTCCATGATTTCT+TGG 0.325473 7.1:+5507536 MS.gene07627:CDS
TTGGAGCATGTTCTTGAGTT+GGG 0.332417 7.1:-5506933 None:intergenic
GTAATTGAAGCTGTTGGAAT+TGG 0.337918 7.1:-5507070 None:intergenic
TCTACAATGAATAATGATAT+TGG 0.357969 7.1:+5507435 MS.gene07627:CDS
AATAATGATATTGGAATGTT+TGG 0.379983 7.1:+5507444 MS.gene07627:CDS
TTTGTTGCCATTAATGTTGT+TGG 0.382808 7.1:-5505995 None:intergenic
TCTGAGGAAGTGTTGGAAAC+AGG 0.383083 7.1:-5506871 None:intergenic
GCAAACATGGCGAGAAGAAA+TGG 0.383718 7.1:+5506230 MS.gene07627:CDS
AGCAATGGAGAAATCAATTT+GGG 0.385884 7.1:+5507677 MS.gene07627:CDS
GTTCATAAGAGGGTTGGTTT+TGG 0.388862 7.1:-5507284 None:intergenic
AAGTGCAGATGTGAAGAAAA+AGG 0.388942 7.1:+5506120 MS.gene07627:CDS
CGTGCATTAGGTGACCTTAC+TGG 0.399967 7.1:+5506187 MS.gene07627:CDS
CACAATCCAGCTCGTGCATT+AGG 0.407149 7.1:+5506175 MS.gene07627:CDS
ATTTCTTCTCGCCATGTTTG+CGG 0.411811 7.1:-5506228 None:intergenic
GCATGCCACTGGTTAATCCT+TGG 0.413966 7.1:-5506795 None:intergenic
TAGAGATAGGATCATGCATT+TGG 0.417757 7.1:-5506834 None:intergenic
TGGATTAAAGTGTTCATAAG+AGG 0.422907 7.1:-5507295 None:intergenic
TTTAGCGGCATGGTAGAGAT+AGG 0.433827 7.1:-5506847 None:intergenic
ACCAGAAAACATGTGGTACT+AGG 0.442303 7.1:+5506305 MS.gene07627:CDS
TGAACCGCAGCAACAAAGAT+TGG 0.444677 7.1:+5507587 MS.gene07627:CDS
CATGATTTCTTGGGAATTGG+AGG 0.445123 7.1:+5507546 MS.gene07627:CDS
TTCGGTGTAACTGAAGATTC+TGG 0.450568 7.1:-5506060 None:intergenic
ATGGAAGATTGTGACCTCTT+CGG 0.458250 7.1:-5506078 None:intergenic
GCAACAGTCCATGATTTCTT+GGG 0.459975 7.1:+5507537 MS.gene07627:CDS
CATGCCACCACATGCATTGT+TGG 0.462483 7.1:-5506971 None:intergenic
CTCCAATTCCCAAGAAATCA+TGG 0.464360 7.1:-5507545 None:intergenic
AGTTGAAGGGTTGAAGAAGA+TGG 0.465582 7.1:-5507042 None:intergenic
ATAGAACCAGAAACATGATT+AGG 0.468762 7.1:-5507246 None:intergenic
GGTGCTACTGCAAGCAATAG+TGG 0.468938 7.1:+5507177 MS.gene07627:CDS
TCTAACATGGCTGGTGTTAG+TGG 0.470215 7.1:+5507333 MS.gene07627:CDS
GATACGCTGTTCAATCAGAT+TGG 0.476113 7.1:+5506275 MS.gene07627:CDS
TGGAATTGGAACTAAGTTGA+AGG 0.481061 7.1:-5507056 None:intergenic
GTTGGAGCATGTTCTTGAGT+TGG 0.484302 7.1:-5506934 None:intergenic
AATTGTTCAAATTTGATACA+TGG 0.491018 7.1:+5507504 MS.gene07627:CDS
AGCATTAAGTCAACAGAGGT+TGG 0.491230 7.1:+5507611 MS.gene07627:CDS
GTTTAATTCTGAGGAAGTGT+TGG 0.503695 7.1:-5506878 None:intergenic
CAAGTTTGGTGGCATGCCAC+TGG 0.504812 7.1:-5506806 None:intergenic
GATATTGGAATGTTTGGTCA+TGG 0.511947 7.1:+5507450 MS.gene07627:CDS
ACAATCTTCCATGGAAACTT+AGG 0.513491 7.1:+5506089 MS.gene07627:CDS
TAAAGTGTTCATAAGAGGGT+TGG 0.514305 7.1:-5507290 None:intergenic
GATGAAGAATGTTGCACAAG+AGG 0.514880 7.1:+5507476 MS.gene07627:CDS
TTGGTTGATCTGAATGATGT+TGG 0.518626 7.1:-5506952 None:intergenic
CGCTGTTCAATCAGATTGGA+AGG 0.519515 7.1:+5506279 MS.gene07627:CDS
GTTCTTTGCCTAAGTTTCCA+TGG 0.520812 7.1:-5506097 None:intergenic
ATTGAAGTAATTGAAGCTGT+TGG 0.522656 7.1:-5507076 None:intergenic
GAAAAGCTTTGTTAGTAGCA+TGG 0.526473 7.1:+5507218 MS.gene07627:CDS
TGGAGGACTAATTGCTGGCA+TGG 0.527954 7.1:+5507110 MS.gene07627:CDS
CCAGAAAACATGTGGTACTA+GGG 0.530598 7.1:+5506306 MS.gene07627:CDS
ATTTGGCTTTGCAAGTTTGG+TGG 0.531585 7.1:-5506817 None:intergenic
TGGTGAACACATGATGGCTC+AGG 0.534078 7.1:-5506154 None:intergenic
ATAGTCATTGTTTAATTCTG+AGG 0.543313 7.1:-5506887 None:intergenic
GGTTGAAGAAGATGGAGGCA+AGG 0.548129 7.1:-5507034 None:intergenic
ATGGCTGGTGTTAGTGGTGG+AGG 0.549455 7.1:+5507339 MS.gene07627:CDS
TGCTGGCATGGCTCAAATGT+CGG 0.549729 7.1:+5507122 MS.gene07627:CDS
AGGTCACCTAATGCACGAGC+TGG 0.556111 7.1:-5506181 None:intergenic
GGCATGTTCTCAACTAGTGC+AGG 0.558296 7.1:+5506988 MS.gene07627:CDS
TCATCATCATCTTCCACATG+AGG 0.560330 7.1:+5507650 MS.gene07627:CDS
TGGAGCATGTTCTTGAGTTG+GGG 0.560364 7.1:-5506932 None:intergenic
CATGAATTATCTAACATGGC+TGG 0.563778 7.1:+5507324 MS.gene07627:CDS
GGATTAAAGTGTTCATAAGA+GGG 0.569779 7.1:-5507294 None:intergenic
GAAGAGGTCACAATCTTCCA+TGG 0.574717 7.1:+5506080 MS.gene07627:CDS
GCTTCCAATCTTTGTTGCTG+CGG 0.575223 7.1:-5507591 None:intergenic
TCCATTGCTGAATCCTCATG+TGG 0.577321 7.1:-5507663 None:intergenic
TGCATCACAGAATGCTCTGT+GGG 0.579430 7.1:-5506746 None:intergenic
AATAGATCCTACTGCTGAAG+TGG 0.580873 7.1:+5505961 MS.gene07627:CDS
AGGGAATACAAATGTGATTG+TGG 0.590905 7.1:+5506325 MS.gene07627:CDS
GTGCTACTGCAAGCAATAGT+GGG 0.592488 7.1:+5507178 MS.gene07627:CDS
TTAGATAATTCATGCTGCAG+TGG 0.592945 7.1:-5507315 None:intergenic
GGAATTGGAACTAAGTTGAA+GGG 0.596686 7.1:-5507055 None:intergenic
AATGCAACCACTTCAGCAGT+AGG 0.598028 7.1:-5505968 None:intergenic
TGAAGGGTTGAAGAAGATGG+AGG 0.598478 7.1:-5507039 None:intergenic
TCCACATGAGGATTCAGCAA+TGG 0.616123 7.1:+5507662 MS.gene07627:CDS
CTAATGCACGAGCTGGATTG+TGG 0.622870 7.1:-5506174 None:intergenic
AATCTTCAGTTACACCGAAG+AGG 0.641075 7.1:+5506064 MS.gene07627:CDS
ATGCAACAAGGGATTTCAGA+GGG 0.641353 7.1:+5506036 MS.gene07627:CDS
AACATGGCTGGTGTTAGTGG+TGG 0.642397 7.1:+5507336 MS.gene07627:CDS
TCAACCAACAATGCATGTGG+TGG 0.656711 7.1:+5506967 MS.gene07627:CDS
TATGCAACAAGGGATTTCAG+AGG 0.657445 7.1:+5506035 MS.gene07627:CDS
GGATTGTGGTGAACACATGA+TGG 0.659836 7.1:-5506160 None:intergenic
AGATCAACCAACAATGCATG+TGG 0.667821 7.1:+5506964 MS.gene07627:CDS
GCAGCATGAATTATCTAACA+TGG 0.668171 7.1:+5507320 MS.gene07627:CDS
TGGAAGCATTAAGTCAACAG+AGG 0.675968 7.1:+5507607 MS.gene07627:CDS
TTTGATACATGGAAGTGATG+TGG 0.683521 7.1:+5507515 MS.gene07627:CDS
ATGCATCACAGAATGCTCTG+TGG 0.684328 7.1:-5506747 None:intergenic
GTGTGTGAGATATGCAACAA+GGG 0.694352 7.1:+5506025 MS.gene07627:CDS
GAAAACAACAGAGTAAACCA+AGG 0.707069 7.1:+5506778 MS.gene07627:CDS
AAGGCTCACCAGAAAACATG+TGG 0.716558 7.1:+5506298 MS.gene07627:CDS
GTAAACCAAGGATTAACCAG+TGG 0.716826 7.1:+5506790 MS.gene07627:CDS
GGTGAACACATGATGGCTCA+GGG 0.717782 7.1:-5506153 None:intergenic
TGTGTGTGAGATATGCAACA+AGG 0.725588 7.1:+5506024 MS.gene07627:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAATAATTTGCATAAT+TGG + chr7.1:5506539-5506558 MS.gene07627:intron 10.0%
!!! AAAATATGTTTTCCATTTTT+AGG - chr7.1:5506486-5506505 None:intergenic 15.0%
!! AATAATGATATTGGAATGTT+TGG + chr7.1:5507444-5507463 MS.gene07627:CDS 20.0%
!! AATTGTTCAAATTTGATACA+TGG + chr7.1:5507504-5507523 MS.gene07627:CDS 20.0%
!! TACTTCAATGACAATAAAAA+TGG + chr7.1:5507090-5507109 MS.gene07627:CDS 20.0%
!! TCTACAATGAATAATGATAT+TGG + chr7.1:5507435-5507454 MS.gene07627:CDS 20.0%
!!! TAATATTTAGAATGCATGTT+TGG - chr7.1:5506661-5506680 None:intergenic 20.0%
! AATTGGATTGAAATCGAATT+TGG + chr7.1:5506556-5506575 MS.gene07627:intron 25.0%
! ATAGTCATTGTTTAATTCTG+AGG - chr7.1:5506890-5506909 None:intergenic 25.0%
! ATTATCTCCAACAACATTAA+TGG + chr7.1:5505988-5506007 MS.gene07627:CDS 25.0%
! TGAAACAAAGTGAATACAAT+AGG + chr7.1:5506460-5506479 MS.gene07627:intron 25.0%
! TTCAATGACAATAAAAATGG+AGG + chr7.1:5507093-5507112 MS.gene07627:CDS 25.0%
! TTTGTTACAAATATTTGTGC+AGG + chr7.1:5506410-5506429 MS.gene07627:intron 25.0%
!!! GTTGTTCTTTTTGAAACAAT+TGG - chr7.1:5507377-5507396 None:intergenic 25.0%
AGCAATGGAGAAATCAATTT+GGG + chr7.1:5507677-5507696 MS.gene07627:CDS 30.0%
ATAGAACCAGAAACATGATT+AGG - chr7.1:5507249-5507268 None:intergenic 30.0%
ATTGAAGTAATTGAAGCTGT+TGG - chr7.1:5507079-5507098 None:intergenic 30.0%
ATTGCTGTACCTAGAAAATA+TGG - chr7.1:5506353-5506372 None:intergenic 30.0%
CCTGTGTTATACAGAAAAAT+AGG - chr7.1:5506710-5506729 None:intergenic 30.0%
GAATACAATAGGCCTAAAAA+TGG + chr7.1:5506471-5506490 MS.gene07627:intron 30.0%
TTTGTTGCCATTAATGTTGT+TGG - chr7.1:5505998-5506017 None:intergenic 30.0%
! ATTGTGGAACCATATTTTCT+AGG + chr7.1:5506341-5506360 MS.gene07627:CDS 30.0%
! GGATTAAAGTGTTCATAAGA+GGG - chr7.1:5507297-5507316 None:intergenic 30.0%
! TGGATTAAAGTGTTCATAAG+AGG - chr7.1:5507298-5507317 None:intergenic 30.0%
!! CCTATTTTTCTGTATAACAC+AGG + chr7.1:5506707-5506726 MS.gene07627:intron 30.0%
!!! AATGTTTTTTGATGCCAGTA+AGG - chr7.1:5506204-5506223 None:intergenic 30.0%
AAAAATGGAGGACTAATTGC+TGG + chr7.1:5507105-5507124 MS.gene07627:CDS 35.0%
AAGTGCAGATGTGAAGAAAA+AGG + chr7.1:5506120-5506139 MS.gene07627:CDS 35.0%
ACAATCTTCCATGGAAACTT+AGG + chr7.1:5506089-5506108 MS.gene07627:CDS 35.0%
ACTACAAAAAGCAGCACAAA+TGG + chr7.1:5507155-5507174 MS.gene07627:CDS 35.0%
AGGGAATACAAATGTGATTG+TGG + chr7.1:5506325-5506344 MS.gene07627:CDS 35.0%
CAGCAATGGAGAAATCAATT+TGG + chr7.1:5507676-5507695 MS.gene07627:CDS 35.0%
CATGAATTATCTAACATGGC+TGG + chr7.1:5507324-5507343 MS.gene07627:CDS 35.0%
CTACAAAAAGCAGCACAAAT+GGG + chr7.1:5507156-5507175 MS.gene07627:CDS 35.0%
GAAAACAACAGAGTAAACCA+AGG + chr7.1:5506778-5506797 MS.gene07627:CDS 35.0%
GATATTGGAATGTTTGGTCA+TGG + chr7.1:5507450-5507469 MS.gene07627:CDS 35.0%
GCAGCATGAATTATCTAACA+TGG + chr7.1:5507320-5507339 MS.gene07627:CDS 35.0%
GTAATTGAAGCTGTTGGAAT+TGG - chr7.1:5507073-5507092 None:intergenic 35.0%
GTTAGTCCTAATCATGTTTC+TGG + chr7.1:5507240-5507259 MS.gene07627:CDS 35.0%
TAGAGATAGGATCATGCATT+TGG - chr7.1:5506837-5506856 None:intergenic 35.0%
TTAGATAATTCATGCTGCAG+TGG - chr7.1:5507318-5507337 None:intergenic 35.0%
TTGGTTGATCTGAATGATGT+TGG - chr7.1:5506955-5506974 None:intergenic 35.0%
TTTGATACATGGAAGTGATG+TGG + chr7.1:5507515-5507534 MS.gene07627:CDS 35.0%
! AACAAAGCTTTTCTGCATCA+TGG - chr7.1:5507211-5507230 None:intergenic 35.0%
! AGAATGCATGTTTGGAATCA+GGG - chr7.1:5506653-5506672 None:intergenic 35.0%
! GGAATTGGAACTAAGTTGAA+GGG - chr7.1:5507058-5507077 None:intergenic 35.0%
! GGGATCTTAGTGAGTTTTTA+GGG - chr7.1:5506915-5506934 None:intergenic 35.0%
! GTTTAATTCTGAGGAAGTGT+TGG - chr7.1:5506881-5506900 None:intergenic 35.0%
! TAAAGTGTTCATAAGAGGGT+TGG - chr7.1:5507293-5507312 None:intergenic 35.0%
! TAGAATGCATGTTTGGAATC+AGG - chr7.1:5506654-5506673 None:intergenic 35.0%
! TGGAATTGGAACTAAGTTGA+AGG - chr7.1:5507059-5507078 None:intergenic 35.0%
!! AAACATTTTAGCCGCAAACA+TGG + chr7.1:5506217-5506236 MS.gene07627:CDS 35.0%
!! GAAAAGCTTTGTTAGTAGCA+TGG + chr7.1:5507218-5507237 MS.gene07627:CDS 35.0%
!!! TGCTGCTTTTTGTAGTAAAG+CGG - chr7.1:5507151-5507170 None:intergenic 35.0%
!!! TTTTCCGCCTTATTTTCACA+CGG + chr7.1:5506384-5506403 MS.gene07627:intron 35.0%
AATAGATCCTACTGCTGAAG+TGG + chr7.1:5505961-5505980 MS.gene07627:CDS 40.0%
AATCTTCAGTTACACCGAAG+AGG + chr7.1:5506064-5506083 MS.gene07627:CDS 40.0%
ACCAGAAAACATGTGGTACT+AGG + chr7.1:5506305-5506324 MS.gene07627:CDS 40.0%
AGATCAACCAACAATGCATG+TGG + chr7.1:5506964-5506983 MS.gene07627:CDS 40.0%
AGCATTAAGTCAACAGAGGT+TGG + chr7.1:5507611-5507630 MS.gene07627:CDS 40.0%
AGTTGAAGGGTTGAAGAAGA+TGG - chr7.1:5507045-5507064 None:intergenic 40.0%
ATGCAACAAGGGATTTCAGA+GGG + chr7.1:5506036-5506055 MS.gene07627:CDS 40.0%
ATGGAAGATTGTGACCTCTT+CGG - chr7.1:5506081-5506100 None:intergenic 40.0%
ATTTCTTCTCGCCATGTTTG+CGG - chr7.1:5506231-5506250 None:intergenic 40.0%
CAAATCGCCGTGTGAAAATA+AGG - chr7.1:5506394-5506413 None:intergenic 40.0%
CATGATTTCTTGGGAATTGG+AGG + chr7.1:5507546-5507565 MS.gene07627:CDS 40.0%
CCAGAAAACATGTGGTACTA+GGG + chr7.1:5506306-5506325 MS.gene07627:CDS 40.0%
CTCCAATTCCCAAGAAATCA+TGG - chr7.1:5507548-5507567 None:intergenic 40.0%
GATACGCTGTTCAATCAGAT+TGG + chr7.1:5506275-5506294 MS.gene07627:CDS 40.0%
GATGAAGAATGTTGCACAAG+AGG + chr7.1:5507476-5507495 MS.gene07627:CDS 40.0%
GCAACAGTCCATGATTTCTT+GGG + chr7.1:5507537-5507556 MS.gene07627:CDS 40.0%
GTAAACCAAGGATTAACCAG+TGG + chr7.1:5506790-5506809 MS.gene07627:CDS 40.0%
GTCCATGATTTCTTGGGAAT+TGG + chr7.1:5507543-5507562 MS.gene07627:CDS 40.0%
GTGTGTGAGATATGCAACAA+GGG + chr7.1:5506025-5506044 MS.gene07627:CDS 40.0%
GTTCTTTGCCTAAGTTTCCA+TGG - chr7.1:5506100-5506119 None:intergenic 40.0%
TATGCAACAAGGGATTTCAG+AGG + chr7.1:5506035-5506054 MS.gene07627:CDS 40.0%
TCATCATCATCTTCCACATG+AGG + chr7.1:5507650-5507669 MS.gene07627:CDS 40.0%
TGTGTGTGAGATATGCAACA+AGG + chr7.1:5506024-5506043 MS.gene07627:CDS 40.0%
TTGGAGCATGTTCTTGAGTT+GGG - chr7.1:5506936-5506955 None:intergenic 40.0%
! AAGATGGAGGCAAGGTTTTT+GGG - chr7.1:5507029-5507048 None:intergenic 40.0%
! GGGGATCTTAGTGAGTTTTT+AGG - chr7.1:5506916-5506935 None:intergenic 40.0%
! TTCGGTGTAACTGAAGATTC+TGG - chr7.1:5506063-5506082 None:intergenic 40.0%
!! ATTTGGCTTTGCAAGTTTGG+TGG - chr7.1:5506820-5506839 None:intergenic 40.0%
!! GTGTTGGAAACAGGTTTTAG+CGG - chr7.1:5506865-5506884 None:intergenic 40.0%
!! TGCATTTGGCTTTGCAAGTT+TGG - chr7.1:5506823-5506842 None:intergenic 40.0%
!! TGGAAGCATTAAGTCAACAG+AGG + chr7.1:5507607-5507626 MS.gene07627:CDS 40.0%
!!! GTTCATAAGAGGGTTGGTTT+TGG - chr7.1:5507287-5507306 None:intergenic 40.0%
AAGGCTCACCAGAAAACATG+TGG + chr7.1:5506298-5506317 MS.gene07627:CDS 45.0%
AATGCAACCACTTCAGCAGT+AGG - chr7.1:5505971-5505990 None:intergenic 45.0%
ATCGCCGTGTGAAAATAAGG+CGG - chr7.1:5506391-5506410 None:intergenic 45.0%
ATGCATCACAGAATGCTCTG+TGG - chr7.1:5506750-5506769 None:intergenic 45.0%
CGCTGTTCAATCAGATTGGA+AGG + chr7.1:5506279-5506298 MS.gene07627:CDS 45.0%
GAAGAGGTCACAATCTTCCA+TGG + chr7.1:5506080-5506099 MS.gene07627:CDS 45.0%
GCAAACATGGCGAGAAGAAA+TGG + chr7.1:5506230-5506249 MS.gene07627:CDS 45.0%
GCTTCCAATCTTTGTTGCTG+CGG - chr7.1:5507594-5507613 None:intergenic 45.0%
GGATTGTGGTGAACACATGA+TGG - chr7.1:5506163-5506182 None:intergenic 45.0%
GGCAACAGTCCATGATTTCT+TGG + chr7.1:5507536-5507555 MS.gene07627:CDS 45.0%
GTTGGAGCATGTTCTTGAGT+TGG - chr7.1:5506937-5506956 None:intergenic 45.0%
TCAACCAACAATGCATGTGG+TGG + chr7.1:5506967-5506986 MS.gene07627:CDS 45.0%
TCCACATGAGGATTCAGCAA+TGG + chr7.1:5507662-5507681 MS.gene07627:CDS 45.0%
TCCATTGCTGAATCCTCATG+TGG - chr7.1:5507666-5507685 None:intergenic 45.0%
TGAACCGCAGCAACAAAGAT+TGG + chr7.1:5507587-5507606 MS.gene07627:CDS 45.0%
TGAAGGGTTGAAGAAGATGG+AGG - chr7.1:5507042-5507061 None:intergenic 45.0%
TGCATCACAGAATGCTCTGT+GGG - chr7.1:5506749-5506768 None:intergenic 45.0%
TTTAGCGGCATGGTAGAGAT+AGG - chr7.1:5506850-5506869 None:intergenic 45.0%
! ACTAGTGCAGGTGCACTTTT+TGG + chr7.1:5507000-5507019 MS.gene07627:CDS 45.0%
! CCCTAGTACCACATGTTTTC+TGG - chr7.1:5506309-5506328 None:intergenic 45.0%
! GAAGATGGAGGCAAGGTTTT+TGG - chr7.1:5507030-5507049 None:intergenic 45.0%
! GTGCTACTGCAAGCAATAGT+GGG + chr7.1:5507178-5507197 MS.gene07627:CDS 45.0%
! TCTAACATGGCTGGTGTTAG+TGG + chr7.1:5507333-5507352 MS.gene07627:CDS 45.0%
! TGGAGCATGTTCTTGAGTTG+GGG - chr7.1:5506935-5506954 None:intergenic 45.0%
!! TCTGAGGAAGTGTTGGAAAC+AGG - chr7.1:5506874-5506893 None:intergenic 45.0%
CACAATCCAGCTCGTGCATT+AGG + chr7.1:5506175-5506194 MS.gene07627:CDS 50.0%
CATGCCACCACATGCATTGT+TGG - chr7.1:5506974-5506993 None:intergenic 50.0%
CGTGCATTAGGTGACCTTAC+TGG + chr7.1:5506187-5506206 MS.gene07627:CDS 50.0%
CTAATGCACGAGCTGGATTG+TGG - chr7.1:5506177-5506196 None:intergenic 50.0%
GGCATGTTCTCAACTAGTGC+AGG + chr7.1:5506988-5507007 MS.gene07627:CDS 50.0%
GGTGAACACATGATGGCTCA+GGG - chr7.1:5506156-5506175 None:intergenic 50.0%
GGTTGAAGAAGATGGAGGCA+AGG - chr7.1:5507037-5507056 None:intergenic 50.0%
TGCTGGCATGGCTCAAATGT+CGG + chr7.1:5507122-5507141 MS.gene07627:CDS 50.0%
TGGAGGACTAATTGCTGGCA+TGG + chr7.1:5507110-5507129 MS.gene07627:CDS 50.0%
TGGTGAACACATGATGGCTC+AGG - chr7.1:5506157-5506176 None:intergenic 50.0%
! AACATGGCTGGTGTTAGTGG+TGG + chr7.1:5507336-5507355 MS.gene07627:CDS 50.0%
! GCATGCCACTGGTTAATCCT+TGG - chr7.1:5506798-5506817 None:intergenic 50.0%
!! AGTGCAGGTGCACTTTTTGG+TGG + chr7.1:5507003-5507022 MS.gene07627:CDS 50.0%
!! GGAAACAGGTTTTAGCGGCA+TGG - chr7.1:5506860-5506879 None:intergenic 50.0%
!! GGTGCTACTGCAAGCAATAG+TGG + chr7.1:5507177-5507196 MS.gene07627:CDS 50.0%
AGGTCACCTAATGCACGAGC+TGG - chr7.1:5506184-5506203 None:intergenic 55.0%
! ATGGCTGGTGTTAGTGGTGG+AGG + chr7.1:5507339-5507358 MS.gene07627:CDS 55.0%
! CAAGTTTGGTGGCATGCCAC+TGG - chr7.1:5506809-5506828 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 5505941 5507707 5505941 ID=MS.gene07627
chr7.1 mRNA 5505941 5507707 5505941 ID=MS.gene07627.t1;Parent=MS.gene07627
chr7.1 exon 5505941 5506362 5505941 ID=MS.gene07627.t1.exon1;Parent=MS.gene07627.t1
chr7.1 CDS 5505941 5506362 5505941 ID=cds.MS.gene07627.t1;Parent=MS.gene07627.t1
chr7.1 exon 5506729 5507707 5506729 ID=MS.gene07627.t1.exon2;Parent=MS.gene07627.t1
chr7.1 CDS 5506729 5507707 5506729 ID=cds.MS.gene07627.t1;Parent=MS.gene07627.t1
Gene Sequence

>MS.gene07627

ATGGATGATGTATTTTATGAAATAGATCCTACTGCTGAAGTGGTTGCATTATCTCCAACAACATTAATGGCAACAAATAGATTTGTGTGTGAGATATGCAACAAGGGATTTCAGAGGGACCAGAATCTTCAGTTACACCGAAGAGGTCACAATCTTCCATGGAAACTTAGGCAAAGAACAAGTGCAGATGTGAAGAAAAAGGTGTATGTGTGCCCTGAGCCATCATGTGTTCACCACAATCCAGCTCGTGCATTAGGTGACCTTACTGGCATCAAAAAACATTTTAGCCGCAAACATGGCGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATACGCTGTTCAATCAGATTGGAAGGCTCACCAGAAAACATGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGTACAGCAATAACATTCAAATTTTTCCGCCTTATTTTCACACGGCGATTTGTTACAAATATTTGTGCAGGCGTTTTGCGAACAAATATTTGAAAACATGAAACAAAGTGAATACAATAGGCCTAAAAATGGAAAACATATTTTTCAAATTAAACAACTGTTATTCTTCAAATTTACTAATTAATAATTTGCATAATTGGATTGAAATCGAATTTGGCAGAATCACTCTATGTCACATTTATTTTCATAAAAACTACACTTTTTAGCTTCAACAAAATCAGAGTGTAACCCTGATTCCAAACATGCATTCTAAATATTAAAATATCTTGTTGCATATGATATAAACCTATTTTTCTGTATAACACAGGAGAGACAGTTTTATAACCCACAGAGCATTCTGTGATGCATTAACTGAAGAAAACAACAGAGTAAACCAAGGATTAACCAGTGGCATGCCACCAAACTTGCAAAGCCAAATGCATGATCCTATCTCTACCATGCCGCTAAAACCTGTTTCCAACACTTCCTCAGAATTAAACAATGACTATGACCCTAAAAACTCACTAAGATCCCCAACTCAAGAACATGCTCCAACATCATTCAGATCAACCAACAATGCATGTGGTGGCATGTTCTCAACTAGTGCAGGTGCACTTTTTGGTGGCCCAAAAACCTTGCCTCCATCTTCTTCAACCCTTCAACTTAGTTCCAATTCCAACAGCTTCAATTACTTCAATGACAATAAAAATGGAGGACTAATTGCTGGCATGGCTCAAATGTCGGCAACCGCTTTACTACAAAAAGCAGCACAAATGGGTGCTACTGCAAGCAATAGTGGGAACTCTTCCATGATGCAGAAAAGCTTTGTTAGTAGCATGGTTAGTCCTAATCATGTTTCTGGTTCTATCATGATGCATCATAACCAAAACCAACCCTCTTATGAACACTTTAATCCACTGCAGCATGAATTATCTAACATGGCTGGTGTTAGTGGTGGAGGAGCATTTACTAACCAATTGTTTCAAAAAGAACAACAAGAAATTTCATTACTGTTTGATAACAATACTAATGTGTCTACAATGAATAATGATATTGGAATGTTTGGTCATGGATTGATGAAGAATGTTGCACAAGAGGTTAGTAATTGTTCAAATTTGATACATGGAAGTGATGTGGCAACAGTCCATGATTTCTTGGGAATTGGAGGTTCAAGCTCAAGTTTGCATGAACCGCAGCAACAAAGATTGGAAGCATTAAGTCAACAGAGGTTGGAAATTATGAATAATTTTCATCATCATCTTCCACATGAGGATTCAGCAATGGAGAAATCAATTTGGGATGTTTGA
Protein sequence

>MS.gene07627.t1

MDDVFYEIDPTAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSADVKKKVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQMHDPISTMPLKPVSNTSSELNNDYDPKNSLRSPTQEHAPTSFRSTNNACGGMFSTSAGALFGGPKTLPPSSSTLQLSSNSNSFNYFNDNKNGGLIAGMAQMSATALLQKAAQMGATASNSGNSSMMQKSFVSSMVSPNHVSGSIMMHHNQNQPSYEHFNPLQHELSNMAGVSGGGAFTNQLFQKEQQEISLLFDNNTNVSTMNNDIGMFGHGLMKNVAQEVSNCSNLIHGSDVATVHDFLGIGGSSSSLHEPQQQRLEALSQQRLEIMNNFHHHLPHEDSAMEKSIWDV