AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07726

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07726.t1 MTR_2g038040 81.868 182 24 1 1 173 1 182 5.21e-106 303
MS.gene07726.t1 MTR_4g057270 54.839 62 28 0 42 103 148 209 7.95e-16 73.9
MS.gene07726.t1 MTR_2g084280 32.558 129 67 3 42 168 132 242 1.28e-15 73.2
MS.gene07726.t1 MTR_8g064700 33.835 133 80 2 42 174 243 367 1.43e-15 73.9
MS.gene07726.t1 MTR_1g112680 53.030 66 31 0 36 101 310 375 2.23e-15 73.6
MS.gene07726.t1 MTR_3g498695 62.000 50 19 0 39 88 294 343 8.56e-14 68.9
MS.gene07726.t1 MTR_3g498695 62.000 50 19 0 39 88 294 343 9.06e-14 68.6
MS.gene07726.t1 MTR_7g117670 58.182 55 23 0 44 98 403 457 1.11e-13 68.6
MS.gene07726.t1 MTR_8g027495 55.932 59 26 0 44 102 459 517 1.37e-13 68.2
MS.gene07726.t1 MTR_7g096350 49.367 79 29 3 44 122 356 423 5.34e-13 66.6
MS.gene07726.t1 MTR_8g067280 51.667 60 29 0 44 103 463 522 8.34e-13 65.9
MS.gene07726.t1 MTR_5g030430 50.000 70 32 1 44 110 494 563 2.94e-12 64.3
MS.gene07726.t1 MTR_4g092700 33.333 93 62 0 6 98 121 213 3.32e-12 63.9
MS.gene07726.t1 MTR_7g083900 57.143 49 21 0 40 88 283 331 3.42e-12 64.3
MS.gene07726.t1 MTR_7g083900 57.143 49 21 0 40 88 283 331 3.52e-12 64.3
MS.gene07726.t1 MTR_8g024770 50.000 62 24 1 44 105 280 334 7.23e-12 63.2
MS.gene07726.t1 MTR_2g081040 32.143 140 78 3 42 174 176 305 1.02e-11 62.8
MS.gene07726.t1 MTR_8g024790 44.286 70 28 1 44 102 292 361 1.55e-11 62.4
MS.gene07726.t1 MTR_3g030700 50.000 58 29 0 42 99 195 252 1.66e-11 62.0
MS.gene07726.t1 MTR_1g072320 47.368 57 30 0 32 88 459 515 1.86e-11 62.0
MS.gene07726.t1 MTR_2g010450 49.091 55 28 0 44 98 178 232 1.96e-11 61.6
MS.gene07726.t1 MTR_4g091910 35.000 140 63 5 41 155 45 181 4.94e-11 59.3
MS.gene07726.t1 MTR_3g104100 48.276 58 30 0 42 99 194 251 7.27e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07726.t1 AT5G57150 61.392 158 56 4 17 174 30 182 6.59e-53 168
MS.gene07726.t1 AT5G57150 61.392 158 56 4 17 174 30 182 7.03e-53 168
MS.gene07726.t1 AT5G57150 61.392 158 56 4 17 174 29 181 9.25e-53 168
MS.gene07726.t1 AT5G57150 61.392 158 56 4 17 174 29 181 1.31e-52 168
MS.gene07726.t1 AT5G57150 61.392 158 56 4 17 174 30 182 7.90e-52 167
MS.gene07726.t1 AT4G29930 47.423 194 79 3 1 173 1 192 1.79e-49 160
MS.gene07726.t1 AT4G29930 47.179 195 80 3 1 174 1 193 2.64e-49 160
MS.gene07726.t1 AT4G29930 47.179 195 80 3 1 174 1 193 2.64e-49 160
MS.gene07726.t1 AT4G29930 46.739 184 69 2 1 173 1 166 6.06e-47 153
MS.gene07726.t1 AT4G29930 46.739 184 66 3 1 173 1 163 2.54e-46 151
MS.gene07726.t1 AT4G29930 46.486 185 67 3 1 174 1 164 4.02e-46 151
MS.gene07726.t1 AT4G29930 47.429 175 69 3 1 154 1 173 1.29e-42 140
MS.gene07726.t1 AT2G28160 34.109 129 70 4 42 168 130 245 5.57e-16 74.3
MS.gene07726.t1 AT2G28160 34.109 129 70 4 42 168 130 245 5.59e-16 74.3
MS.gene07726.t1 AT1G01260 48.101 79 37 1 44 122 434 508 3.38e-15 73.2
MS.gene07726.t1 AT1G01260 48.101 79 37 1 44 122 434 508 3.38e-15 73.2
MS.gene07726.t1 AT1G01260 48.101 79 37 1 44 122 434 508 3.38e-15 73.2
MS.gene07726.t1 AT2G46510 58.182 55 23 0 44 98 396 450 4.16e-14 69.7
MS.gene07726.t1 AT4G16430 47.368 76 39 1 44 118 321 396 9.36e-14 68.6
MS.gene07726.t1 AT2G16910 51.667 60 29 0 42 101 313 372 9.67e-14 68.9
MS.gene07726.t1 AT1G32640 55.000 60 25 1 44 103 453 510 4.15e-13 67.0
MS.gene07726.t1 AT1G12860 50.000 60 30 0 40 99 264 323 1.22e-12 65.5
MS.gene07726.t1 AT1G12860 50.000 60 30 0 40 99 264 323 1.31e-12 65.5
MS.gene07726.t1 AT3G26744 59.184 49 20 0 40 88 304 352 1.62e-12 65.1
MS.gene07726.t1 AT3G26744 59.184 49 20 0 40 88 304 352 1.62e-12 65.1
MS.gene07726.t1 AT3G26744 59.184 49 20 0 40 88 304 352 1.62e-12 65.1
MS.gene07726.t1 AT3G26744 47.945 73 35 1 40 112 304 373 1.64e-12 65.1
MS.gene07726.t1 AT5G46760 58.182 55 21 1 44 98 416 468 2.62e-12 64.7
MS.gene07726.t1 AT4G17880 50.847 59 29 0 45 103 418 476 4.51e-12 63.9
MS.gene07726.t1 AT5G46830 47.619 63 31 1 44 104 344 406 5.45e-11 60.8
MS.gene07726.t1 AT4G00870 42.623 61 35 0 44 104 250 310 8.50e-11 60.1
MS.gene07726.t1 AT1G63650 50.000 58 22 1 46 103 408 458 9.21e-11 60.1
MS.gene07726.t1 AT1G63650 50.000 58 22 1 46 103 408 458 9.21e-11 60.1
MS.gene07726.t1 AT1G63650 50.000 58 22 1 46 103 408 458 9.21e-11 60.1

Find 41 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATAATGGAACTTGAATT+TGG 0.174122 2.4:+51409171 MS.gene07726:CDS
CTGATTTGTTCTCTTCTTCT+TGG 0.191764 2.4:-51409256 None:intergenic
GGATAAAGCTTCAATTATTA+AGG 0.255192 2.4:+51409095 MS.gene07726:CDS
TAGTTTGGATTAATATTATT+AGG 0.309618 2.4:-51409198 None:intergenic
TTAACAACCATGGAGGATAT+TGG 0.346913 2.4:+51408389 None:intergenic
ATGTTTACCTTGCTAATGTT+TGG 0.350291 2.4:-51408708 None:intergenic
TGTTTACCTTGCTAATGTTT+GGG 0.357210 2.4:-51408707 None:intergenic
TCTTGATCAAAATCATAGTT+TGG 0.369624 2.4:-51409213 None:intergenic
AACTTTCCAATTGAAGTCCT+TGG 0.371454 2.4:+51409303 MS.gene07726:CDS
GGTTATTCAAGCTGAGATAA+TGG 0.376023 2.4:+51409158 MS.gene07726:CDS
TTTACCCCAAGGACTTCAAT+TGG 0.376650 2.4:-51409309 None:intergenic
ACTTTCCAATTGAAGTCCTT+GGG 0.388783 2.4:+51409304 MS.gene07726:CDS
ACATTGTCTCTGAGAGGAAC+AGG 0.441534 2.4:+51408640 MS.gene07726:CDS
GTGATGAGTACAACCCTTAC+CGG 0.444393 2.4:+51408411 MS.gene07726:CDS
TTGTGGTTGCAGTTGGGGAT+TGG 0.449305 2.4:+51408545 MS.gene07726:intron
AGATAATGGAACTTGAATTT+GGG 0.453081 2.4:+51409172 MS.gene07726:CDS
TGAGCATGACATGTAACAAA+AGG 0.468788 2.4:+51410532 MS.gene07726:CDS
GCGGATGGTGCAGCATCATC+AGG 0.473222 2.4:+51408603 MS.gene07726:CDS
TTGCAGTTGGGGATTGGACG+AGG 0.482449 2.4:+51408551 MS.gene07726:intron
ACACATGGAAGAGAATATAA+TGG 0.483631 2.4:+51410506 MS.gene07726:CDS
TACATGTTGGTATCCCGGTA+AGG 0.499904 2.4:-51408425 None:intergenic
AAGAGCTTCCTGTGTTGCTA+AGG 0.527358 2.4:+51409232 MS.gene07726:CDS
TGATGATGCTGCACCATCCG+CGG 0.544506 2.4:-51408601 None:intergenic
TTACCTACATGTTGGTATCC+CGG 0.546461 2.4:-51408430 None:intergenic
GAGCATGACATGTAACAAAA+GGG 0.547151 2.4:+51410533 MS.gene07726:CDS
TTCTTGGACCTTAGCAACAC+AGG 0.566724 2.4:-51409240 None:intergenic
CTTTCCAATTGAAGTCCTTG+GGG 0.567494 2.4:+51409305 MS.gene07726:CDS
CTCATCACCAATATCCTCCA+TGG 0.571780 2.4:-51408396 None:intergenic
ACATGTTGGTATCCCGGTAA+GGG 0.580108 2.4:-51408424 None:intergenic
TTCGAAGACAGTCTTCATTG+AGG 0.583420 2.4:+51410644 MS.gene07726:CDS
TGATGAGTACAACCCTTACC+GGG 0.591624 2.4:+51408412 MS.gene07726:CDS
GCAGCTTAGGGTTACACACA+TGG 0.606797 2.4:+51410491 MS.gene07726:intron
TAACAAAAGGGCAGACACAA+TGG 0.615640 2.4:+51410545 MS.gene07726:CDS
TATGATTCAAGCTCCGCGGA+TGG 0.621734 2.4:+51408588 MS.gene07726:CDS
GGACCACTGCTCTAAGTGCA+AGG 0.633774 2.4:-51408686 None:intergenic
AGTCTTGCATGAGCAAGAGA+AGG 0.639595 2.4:+51409137 MS.gene07726:CDS
CTAAGAACATTGTCTCTGAG+AGG 0.650410 2.4:+51408634 MS.gene07726:CDS
ACTCCTTGCACTTAGAGCAG+TGG 0.656584 2.4:+51408683 MS.gene07726:CDS
AGTGGTCCCAAACATTAGCA+AGG 0.661525 2.4:+51408701 MS.gene07726:CDS
TTGTCTCTGAGAGGAACAGG+AGG 0.687982 2.4:+51408643 MS.gene07726:CDS
GTATTATGATTCAAGCTCCG+CGG 0.725456 2.4:+51408584 MS.gene07726:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATCAATATTTATAT+TGG - chr2.4:51409899-51409918 None:intergenic 10.0%
!! ATATTGTTAATTAAGATATA+TGG + chr2.4:51408522-51408541 MS.gene07726:intron 10.0%
!! TAGTGAAAATTATTAATTAA+TGG - chr2.4:51408750-51408769 None:intergenic 10.0%
!!! ATATATTAGCTTTATTTTTT+AGG + chr2.4:51410249-51410268 MS.gene07726:intron 10.0%
!!! TTGATTTTTTATTATTTGTT+TGG + chr2.4:51408796-51408815 MS.gene07726:intron 10.0%
!!! TTTTAAAAGTAATTATAAGA+TGG - chr2.4:51409730-51409749 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTAAGTTG+GGG - chr2.4:51409422-51409441 None:intergenic 10.0%
!! ACTCTTAAAGTATAAAAATT+AGG - chr2.4:51409612-51409631 None:intergenic 15.0%
!! AGATAAAAAAAATAGATAGT+GGG + chr2.4:51410137-51410156 MS.gene07726:intron 15.0%
!! CTCTTAAAGTATAAAAATTA+GGG - chr2.4:51409611-51409630 None:intergenic 15.0%
!! TAGTTTGGATTAATATTATT+AGG - chr2.4:51409201-51409220 None:intergenic 15.0%
!!! AAAGATCTTTTGAAATTTAA+TGG - chr2.4:51409798-51409817 None:intergenic 15.0%
!!! ATCAATTTCTTTTTAATGAT+GGG + chr2.4:51409050-51409069 MS.gene07726:intron 15.0%
!!! CTAATATATTTTCTCTATTA+GGG - chr2.4:51410238-51410257 None:intergenic 15.0%
!!! TGTGTAATTAATTTGATATA+TGG + chr2.4:51410462-51410481 MS.gene07726:intron 15.0%
!!! TTTAATCTATATTTGTTGTT+GGG - chr2.4:51410324-51410343 None:intergenic 15.0%
!! ATGCTAAAAAAATAAATGTG+GGG + chr2.4:51410383-51410402 MS.gene07726:intron 20.0%
!! CAAATAATTATACCATATGA+TGG - chr2.4:51409012-51409031 None:intergenic 20.0%
!! CATCATATGGTATAATTATT+TGG + chr2.4:51409010-51409029 MS.gene07726:intron 20.0%
!! GAGATAAAAAAAATAGATAG+TGG + chr2.4:51410136-51410155 MS.gene07726:intron 20.0%
!! GATGCTAAAAAAATAAATGT+GGG + chr2.4:51410382-51410401 MS.gene07726:intron 20.0%
!! GGTTGTTAAAAAAAAAAAAG+TGG - chr2.4:51410297-51410316 None:intergenic 20.0%
!! TAATTATAAGATGGTCATTA+CGG - chr2.4:51409721-51409740 None:intergenic 20.0%
!! TGATGCTAAAAAAATAAATG+TGG + chr2.4:51410381-51410400 MS.gene07726:intron 20.0%
!! TTAAAAAGAAATTGATGTCA+TGG - chr2.4:51409046-51409065 None:intergenic 20.0%
!! TTAATTAAGATATATGGTTG+TGG + chr2.4:51408528-51408547 MS.gene07726:intron 20.0%
!! TTATAAATTGGTTATAAGCA+TGG - chr2.4:51410172-51410191 None:intergenic 20.0%
!!! AATTTTCACTACTCAATTTT+TGG + chr2.4:51408759-51408778 MS.gene07726:intron 20.0%
!!! ATTTTCACTACTCAATTTTT+GGG + chr2.4:51408760-51408779 MS.gene07726:intron 20.0%
!!! CATCAATTTCTTTTTAATGA+TGG + chr2.4:51409049-51409068 MS.gene07726:intron 20.0%
!!! CTTTAATCTATATTTGTTGT+TGG - chr2.4:51410325-51410344 None:intergenic 20.0%
!!! GCTAATATATTTTCTCTATT+AGG - chr2.4:51410239-51410258 None:intergenic 20.0%
!!! TGAATCTAAGATTAAGTTTA+TGG - chr2.4:51409636-51409655 None:intergenic 20.0%
!!! TTAATCTATATTTGTTGTTG+GGG - chr2.4:51410323-51410342 None:intergenic 20.0%
!!! TTTTTTAAACATGTTGTTAG+AGG + chr2.4:51408948-51408967 MS.gene07726:intron 20.0%
! AGATTAAAGAAGAAATTGCA+AGG + chr2.4:51410336-51410355 MS.gene07726:intron 25.0%
! CAAAAATAAGACATTGTATG+AGG + chr2.4:51409857-51409876 MS.gene07726:intron 25.0%
! GGATAAAATATAAGTACGAA+AGG + chr2.4:51408817-51408836 MS.gene07726:intron 25.0%
! GGATAAAGCTTCAATTATTA+AGG + chr2.4:51409095-51409114 MS.gene07726:CDS 25.0%
! TAAGGTGGTGATTTATAAAT+TGG - chr2.4:51410184-51410203 None:intergenic 25.0%
! TATAAATCACCACCTTAATA+AGG + chr2.4:51410187-51410206 MS.gene07726:intron 25.0%
! TCTTGATCAAAATCATAGTT+TGG - chr2.4:51409216-51409235 None:intergenic 25.0%
!! GTAAACATCACAAATTTTAG+TGG + chr2.4:51408723-51408742 MS.gene07726:intron 25.0%
!! TATATTGGAAATTTTTGCAC+AGG - chr2.4:51409884-51409903 None:intergenic 25.0%
!!! AATTTCTTTTTAATGATGGG+TGG + chr2.4:51409053-51409072 MS.gene07726:intron 25.0%
!!! AGATAATGGAACTTGAATTT+GGG + chr2.4:51409172-51409191 MS.gene07726:CDS 25.0%
!!! TAATCTATATTTGTTGTTGG+GGG - chr2.4:51410322-51410341 None:intergenic 25.0%
AAAGTGGATAAAGTCTGATT+TGG - chr2.4:51410281-51410300 None:intergenic 30.0%
ACACATGGAAGAGAATATAA+TGG + chr2.4:51410506-51410525 MS.gene07726:CDS 30.0%
AGTACGAAAGGAAATGAATT+TGG + chr2.4:51408829-51408848 MS.gene07726:intron 30.0%
ATGTTTACCTTGCTAATGTT+TGG - chr2.4:51408711-51408730 None:intergenic 30.0%
GGAAAATTTCAACCATCATA+TGG + chr2.4:51408997-51409016 MS.gene07726:intron 30.0%
TCACTTTGATTCAAGTATGA+AGG + chr2.4:51408467-51408486 MS.gene07726:intron 30.0%
TGATATTGTTACCTACATGT+TGG - chr2.4:51408441-51408460 None:intergenic 30.0%
TGTTTACCTTGCTAATGTTT+GGG - chr2.4:51408710-51408729 None:intergenic 30.0%
TTGATGTCTTTGACATCTAT+TGG + chr2.4:51408976-51408995 MS.gene07726:intron 30.0%
! TAATTGAAGCTTTATCCATC+TGG - chr2.4:51409092-51409111 None:intergenic 30.0%
!! GAGATAATGGAACTTGAATT+TGG + chr2.4:51409171-51409190 MS.gene07726:CDS 30.0%
AAAATAAATGTGGGGTGTGA+TGG + chr2.4:51410391-51410410 MS.gene07726:intron 35.0%
AACTTTCCAATTGAAGTCCT+TGG + chr2.4:51409303-51409322 MS.gene07726:CDS 35.0%
AATGGTAGACCTTATTAAGG+TGG - chr2.4:51410199-51410218 None:intergenic 35.0%
ACTTTCCAATTGAAGTCCTT+GGG + chr2.4:51409304-51409323 MS.gene07726:CDS 35.0%
GAGCATGACATGTAACAAAA+GGG + chr2.4:51410533-51410552 MS.gene07726:CDS 35.0%
GCATCAATAATACAAGAGAG+AGG - chr2.4:51410367-51410386 None:intergenic 35.0%
GGTTATTCAAGCTGAGATAA+TGG + chr2.4:51409158-51409177 MS.gene07726:CDS 35.0%
TGAGCATGACATGTAACAAA+AGG + chr2.4:51410532-51410551 MS.gene07726:CDS 35.0%
!! CTGATTTGTTCTCTTCTTCT+TGG - chr2.4:51409259-51409278 None:intergenic 35.0%
AGAGATGATGATAGAGACAG+TGG - chr2.4:51409340-51409359 None:intergenic 40.0%
ATATATCCTCTTTCTCAGGC+AGG + chr2.4:51410619-51410638 MS.gene07726:intron 40.0%
ATATGGTTGAGTGCAGCTTA+GGG + chr2.4:51410479-51410498 MS.gene07726:intron 40.0%
ATATGGTTGTGGTTGCAGTT+GGG + chr2.4:51408539-51408558 MS.gene07726:intron 40.0%
CTAAGAACATTGTCTCTGAG+AGG + chr2.4:51408634-51408653 MS.gene07726:CDS 40.0%
CTTTCCAATTGAAGTCCTTG+GGG + chr2.4:51409305-51409324 MS.gene07726:CDS 40.0%
GAGATGATGATAGAGACAGT+GGG - chr2.4:51409339-51409358 None:intergenic 40.0%
GCCAATATATCCTCTTTCTC+AGG + chr2.4:51410615-51410634 MS.gene07726:intron 40.0%
GCCTGAGAAAGAGGATATAT+TGG - chr2.4:51410619-51410638 None:intergenic 40.0%
GGCAATGGTAGACCTTATTA+AGG - chr2.4:51410202-51410221 None:intergenic 40.0%
GTATTATGATTCAAGCTCCG+CGG + chr2.4:51408584-51408603 MS.gene07726:CDS 40.0%
TAACAAAAGGGCAGACACAA+TGG + chr2.4:51410545-51410564 MS.gene07726:CDS 40.0%
TATATGGTTGAGTGCAGCTT+AGG + chr2.4:51410478-51410497 MS.gene07726:intron 40.0%
TATATGGTTGTGGTTGCAGT+TGG + chr2.4:51408538-51408557 MS.gene07726:intron 40.0%
TTACCTACATGTTGGTATCC+CGG - chr2.4:51408433-51408452 None:intergenic 40.0%
TTGAAGTCCTTGGGGTAAAT+TGG + chr2.4:51409313-51409332 MS.gene07726:intron 40.0%
TTTACCCCAAGGACTTCAAT+TGG - chr2.4:51409312-51409331 None:intergenic 40.0%
! GGTGACTTTCTTTTTCCAGA+TGG + chr2.4:51409074-51409093 MS.gene07726:intron 40.0%
! TTCTCTATTAGGGTACCTGA+TGG - chr2.4:51410228-51410247 None:intergenic 40.0%
!! CTATATTTGTTGTTGGGGGT+TGG - chr2.4:51410318-51410337 None:intergenic 40.0%
ACATGTTGGTATCCCGGTAA+GGG - chr2.4:51408427-51408446 None:intergenic 45.0%
AGTCTTGCATGAGCAAGAGA+AGG + chr2.4:51409137-51409156 MS.gene07726:CDS 45.0%
AGTGGTCCCAAACATTAGCA+AGG + chr2.4:51408701-51408720 MS.gene07726:CDS 45.0%
ATCACTGAGCTCACAACTCA+TGG + chr2.4:51409481-51409500 MS.gene07726:intron 45.0%
GTGATGAGTACAACCCTTAC+CGG + chr2.4:51408411-51408430 MS.gene07726:CDS 45.0%
TACATGTTGGTATCCCGGTA+AGG - chr2.4:51408428-51408447 None:intergenic 45.0%
TATGGTTGTGGTTGCAGTTG+GGG + chr2.4:51408540-51408559 MS.gene07726:intron 45.0%
TGATGAGTACAACCCTTACC+GGG + chr2.4:51408412-51408431 MS.gene07726:CDS 45.0%
TTACCGGGATACCAACATGT+AGG + chr2.4:51408427-51408446 MS.gene07726:intron 45.0%
TTCTTGGACCTTAGCAACAC+AGG - chr2.4:51409243-51409262 None:intergenic 45.0%
! AAGAGCTTCCTGTGTTGCTA+AGG + chr2.4:51409232-51409251 MS.gene07726:CDS 45.0%
! ACATTGTCTCTGAGAGGAAC+AGG + chr2.4:51408640-51408659 MS.gene07726:CDS 45.0%
! GATTGGACGAGGCTTTTACA+GGG + chr2.4:51408562-51408581 MS.gene07726:CDS 45.0%
! TATTAGGGTACCTGATGGTG+TGG - chr2.4:51410223-51410242 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAAAG+AGG + chr2.4:51409428-51409447 MS.gene07726:intron 5.0%
!!! TTTTTTTTTTTTTTTAAGTT+GGG - chr2.4:51409423-51409442 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTAAGT+TGG - chr2.4:51409424-51409443 None:intergenic 5.0%
ACTCCTTGCACTTAGAGCAG+TGG + chr2.4:51408683-51408702 MS.gene07726:CDS 50.0%
GCAGCTTAGGGTTACACACA+TGG + chr2.4:51410491-51410510 MS.gene07726:intron 50.0%
TATGATTCAAGCTCCGCGGA+TGG + chr2.4:51408588-51408607 MS.gene07726:CDS 50.0%
TCTACCATTGCCACACCATC+AGG + chr2.4:51410210-51410229 MS.gene07726:intron 50.0%
TTGTGGTTGCAGTTGGGGAT+TGG + chr2.4:51408545-51408564 MS.gene07726:intron 50.0%
! GGATTGGACGAGGCTTTTAC+AGG + chr2.4:51408561-51408580 MS.gene07726:CDS 50.0%
! TTGTCTCTGAGAGGAACAGG+AGG + chr2.4:51408643-51408662 MS.gene07726:CDS 50.0%
CAGTGGGCCAATTTACCCCA+AGG - chr2.4:51409323-51409342 None:intergenic 55.0%
CGAAAGCCTGCCTGAGAAAG+AGG - chr2.4:51410628-51410647 None:intergenic 55.0%
TTGCAGTTGGGGATTGGACG+AGG + chr2.4:51408551-51408570 MS.gene07726:intron 55.0%
! GGACCACTGCTCTAAGTGCA+AGG - chr2.4:51408689-51408708 None:intergenic 55.0%
! GGTACCTGATGGTGTGGCAA+TGG - chr2.4:51410217-51410236 None:intergenic 55.0%
! TGATGATGCTGCACCATCCG+CGG - chr2.4:51408604-51408623 None:intergenic 55.0%
GCGGATGGTGCAGCATCATC+AGG + chr2.4:51408603-51408622 MS.gene07726:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 51408398 51410664 51408398 ID=MS.gene07726
chr2.4 mRNA 51408398 51410664 51408398 ID=MS.gene07726.t1;Parent=MS.gene07726
chr2.4 exon 51408398 51408444 51408398 ID=MS.gene07726.t1.exon1;Parent=MS.gene07726.t1
chr2.4 CDS 51408398 51408444 51408398 ID=cds.MS.gene07726.t1;Parent=MS.gene07726.t1
chr2.4 exon 51408557 51408722 51408557 ID=MS.gene07726.t1.exon2;Parent=MS.gene07726.t1
chr2.4 CDS 51408557 51408722 51408557 ID=cds.MS.gene07726.t1;Parent=MS.gene07726.t1
chr2.4 exon 51409093 51409326 51409093 ID=MS.gene07726.t1.exon3;Parent=MS.gene07726.t1
chr2.4 CDS 51409093 51409326 51409093 ID=cds.MS.gene07726.t1;Parent=MS.gene07726.t1
chr2.4 exon 51410495 51410566 51410495 ID=MS.gene07726.t1.exon4;Parent=MS.gene07726.t1
chr2.4 CDS 51410495 51410566 51410495 ID=cds.MS.gene07726.t1;Parent=MS.gene07726.t1
chr2.4 exon 51410641 51410664 51410641 ID=MS.gene07726.t1.exon5;Parent=MS.gene07726.t1
chr2.4 CDS 51410641 51410664 51410641 ID=cds.MS.gene07726.t1;Parent=MS.gene07726.t1
Gene Sequence

>MS.gene07726

ATGGAGGATATTGGTGATGAGTACAACCCTTACCGGGATACCAACATGTAGGTAACAATATCATTTAATTCACTTTGATTCAAGTATGAAGGTACAATTAGTGAAATTAAATTAATTATAATTAATATTGTTAATTAAGATATATGGTTGTGGTTGCAGTTGGGGATTGGACGAGGCTTTTACAGGGTATTATGATTCAAGCTCCGCGGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGTCTCTGAGAGGAACAGGAGGAATAAGCTTAATGAAAGACTCCTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGGTAAACATCACAAATTTTAGTGGTCCATTAATTAATAATTTTCACTACTCAATTTTTGGGTGCAATTTTGCTGTTGATTTTTTATTATTTGTTTGGATAAAATATAAGTACGAAAGGAAATGAATTTGGTTCATATTTAGACTATATATACATGTATTGTTTTGCTTATATTTTATTACAGATAGAGTAATTAATATTATGTGACACAGTGAATAAGTAATTTAATTTTTTAAACATGTTGTTAGAGGTTTGATTGATGTCTTTGACATCTATTGGAAAATTTCAACCATCATATGGTATAATTATTTGGAATGATTAGTCCATGACATCAATTTCTTTTTAATGATGGGTGGTGACTTTCTTTTTCCAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATACAAGTCTTGCATGAGCAAGAGAAGGTTATTCAAGCTGAGATAATGGAACTTGAATTTGGGATGCCTAATAATATTAATCCAAACTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAAATCAGTTATATGATTCTATCAGTACAAGAAACTTTCCAATTGAAGTCCTTGGGGTAAATTGGCCCACTGTCTCTATCATCATCTCTTTCTGTTTCTTGAAATTTTTTAAGAATCAAAATGAACGAATACATTAAGAAATAGTATTCCCCAACTTAAAAAAAAAAAAAAAAAAAGAGGAGATAGATAAATTATTATTATTAAATTGTTATCACTGAGCTCACAACTCATGGACAAACGACTCAAAAACAACTTAGTTCAAAAAAGAGAAAATCAAAGAGCACAAAACTATTTTTTTATAAGCAAACAATATTTAAATTAAAATAGTACAAACATACCCTAATTTTTATACTTTAAGAGTACCATAAACTTAATCTTAGATTCACACATCATTAATTTTAATAAAATAATTAAAGAAGAAGAAAATCATCACTAATTAAAGTGACACCGTAATGACCATCTTATAATTACTTTTAAAAGAATTTAAATTTTATTTGTTGTAAATTACAAAGTCGAATCTCATACCATTAAATTTCAAAAGATCTTTACATTATTTATAAAACGAACAATGATATTTAATTAAACACAAAAATAAGACATTGTATGAGGACCTGTGCAAAAATTTCCAATATAAATATTGATTTGATTAGAAGACAGAAAAAATAATTAAAAATAATGTAAATGAAATATAATTTCTCTAATAATTTATAAAACGAACAATGATATTTAATTAAACACAAAAATAAGACATTGTATGAGGACCTGTGCAAAAATTTCCAATATAAATATTGATTTGATTAGAAGACAGAAAAAATAATTAAAAATAATGTAAATGAAATATAATTTCTCTAATAAAATAGATAGTGAGATAAAAAAAATAGATAGTGGGATTTTCAAACCATGCTTATAACCAATTTATAAATCACCACCTTAATAAGGTCTACCATTGCCACACCATCAGGTACCCTAATAGAGAAAATATATTAGCTTTATTTTTTAGGTTCATACCAAATCAGACTTTATCCACTTTTTTTTTTTTAACAACCAACCCCCAACAACAAATATAGATTAAAGAAGAAATTGCAAGGCATCACCTCTCTCTTGTATTATTGATGCTAAAAAAATAAATGTGGGGTGTGATGGTTATAACTTTATAATTATCTTTGAATTTCTAAAGTAATTAATTATGAGTGTGTAATTAATTTGATATATGGTTGAGTGCAGCTTAGGGTTACACACATGGAAGAGAATATAATGGTAGTGAGCATGACATGTAACAAAAGGGCAGACACAATGGTAAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTCAAAATTATTACTGCCAATATATCCTCTTTCTCAGGCAGGCTTTCGAAGACAGTCTTCATTGA
Protein sequence

>MS.gene07726.t1

MEDIGDEYNPYRDTNIWGLDEAFTGYYDSSSADGAASSGVSSKNIVSERNRRNKLNERLLALRAVVPNISKMDKASIIKDAIEYIQVLHEQEKVIQAEIMELEFGMPNNINPNYDFDQELPVLLRSKKKRTNQLYDSISTRNFPIEVLGLRVTHMEENIMVVSMTCNKRADTMAFEDSLH