Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07868.t1 | XP_013444424.1 | 78.8 | 320 | 64 | 3 | 1 | 318 | 1 | 318 | 1.80E-129 | 472.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07868.t1 | Q9LVJ7 | 55.2 | 172 | 64 | 6 | 132 | 295 | 135 | 301 | 8.3e-38 | 159.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07868.t1 | A0A072TLS7 | 78.8 | 320 | 64 | 3 | 1 | 318 | 1 | 318 | 1.3e-129 | 472.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene07868.t1 | TF | NF-YA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07868.t1 | MTR_8g019540 | 92.500 | 320 | 20 | 3 | 1 | 318 | 1 | 318 | 0.0 | 565 |
| MS.gene07868.t1 | MTR_2g099490 | 53.049 | 328 | 119 | 10 | 7 | 318 | 23 | 331 | 6.67e-89 | 269 |
| MS.gene07868.t1 | MTR_2g099490 | 50.733 | 341 | 123 | 10 | 7 | 318 | 23 | 347 | 1.44e-87 | 266 |
| MS.gene07868.t1 | MTR_2g041090 | 48.404 | 188 | 86 | 6 | 111 | 287 | 17 | 204 | 3.92e-45 | 154 |
| MS.gene07868.t1 | MTR_2g030170 | 62.222 | 90 | 33 | 1 | 138 | 227 | 85 | 173 | 8.92e-33 | 120 |
| MS.gene07868.t1 | MTR_3g061510 | 53.774 | 106 | 45 | 2 | 118 | 222 | 124 | 226 | 9.62e-32 | 121 |
| MS.gene07868.t1 | MTR_2g030170 | 67.532 | 77 | 25 | 0 | 151 | 227 | 130 | 206 | 1.18e-31 | 119 |
| MS.gene07868.t1 | MTR_3g061510 | 53.774 | 106 | 45 | 2 | 118 | 222 | 144 | 246 | 1.25e-31 | 121 |
| MS.gene07868.t1 | MTR_8g037270 | 44.444 | 171 | 73 | 7 | 130 | 280 | 115 | 283 | 6.81e-31 | 118 |
| MS.gene07868.t1 | MTR_7g106450 | 67.123 | 73 | 22 | 1 | 157 | 227 | 154 | 226 | 5.87e-26 | 105 |
| MS.gene07868.t1 | MTR_1g056530 | 47.899 | 119 | 43 | 4 | 112 | 226 | 120 | 223 | 5.90e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07868.t1 | AT3G14020 | 45.695 | 302 | 135 | 13 | 4 | 294 | 17 | 300 | 8.73e-57 | 186 |
| MS.gene07868.t1 | AT3G14020 | 45.695 | 302 | 135 | 13 | 4 | 294 | 17 | 300 | 8.73e-57 | 186 |
| MS.gene07868.t1 | AT1G72830 | 37.273 | 330 | 176 | 9 | 4 | 316 | 23 | 338 | 6.94e-51 | 172 |
| MS.gene07868.t1 | AT1G72830 | 37.160 | 331 | 176 | 10 | 4 | 316 | 23 | 339 | 4.42e-49 | 167 |
| MS.gene07868.t1 | AT1G54160 | 48.889 | 225 | 97 | 7 | 17 | 230 | 24 | 241 | 5.28e-48 | 163 |
| MS.gene07868.t1 | AT1G17590 | 37.615 | 327 | 162 | 12 | 7 | 316 | 25 | 326 | 1.99e-46 | 160 |
| MS.gene07868.t1 | AT1G17590 | 37.615 | 327 | 162 | 12 | 7 | 316 | 25 | 326 | 1.99e-46 | 160 |
| MS.gene07868.t1 | AT1G17590 | 37.615 | 327 | 162 | 12 | 7 | 316 | 25 | 326 | 1.99e-46 | 160 |
| MS.gene07868.t1 | AT1G17590 | 37.615 | 327 | 162 | 12 | 7 | 316 | 25 | 326 | 1.99e-46 | 160 |
| MS.gene07868.t1 | AT1G72830 | 33.739 | 329 | 164 | 9 | 4 | 316 | 23 | 313 | 3.18e-37 | 135 |
| MS.gene07868.t1 | AT1G30500 | 52.632 | 114 | 53 | 1 | 118 | 231 | 52 | 164 | 1.59e-35 | 127 |
| MS.gene07868.t1 | AT1G30500 | 50.877 | 114 | 51 | 1 | 118 | 231 | 52 | 160 | 3.28e-34 | 124 |
| MS.gene07868.t1 | AT2G34720 | 47.059 | 119 | 53 | 2 | 115 | 227 | 44 | 158 | 8.02e-31 | 115 |
| MS.gene07868.t1 | AT5G12840 | 46.032 | 126 | 64 | 3 | 104 | 229 | 112 | 233 | 2.59e-30 | 116 |
| MS.gene07868.t1 | AT5G12840 | 46.032 | 126 | 64 | 3 | 104 | 229 | 112 | 233 | 2.59e-30 | 116 |
| MS.gene07868.t1 | AT5G12840 | 46.032 | 126 | 64 | 3 | 104 | 229 | 113 | 234 | 2.93e-30 | 115 |
| MS.gene07868.t1 | AT5G12840 | 46.032 | 126 | 64 | 3 | 104 | 229 | 113 | 234 | 2.93e-30 | 115 |
| MS.gene07868.t1 | AT5G12840 | 46.032 | 126 | 64 | 3 | 104 | 229 | 113 | 234 | 2.93e-30 | 115 |
| MS.gene07868.t1 | AT2G34720 | 49.123 | 114 | 48 | 2 | 120 | 227 | 14 | 123 | 7.85e-30 | 111 |
| MS.gene07868.t1 | AT2G34720 | 49.123 | 114 | 48 | 2 | 120 | 227 | 14 | 123 | 7.85e-30 | 111 |
| MS.gene07868.t1 | AT3G20910 | 45.802 | 131 | 43 | 4 | 106 | 222 | 105 | 221 | 3.51e-29 | 114 |
| MS.gene07868.t1 | AT5G06510 | 51.351 | 111 | 40 | 5 | 117 | 226 | 93 | 190 | 2.08e-24 | 100 |
| MS.gene07868.t1 | AT5G06510 | 51.351 | 111 | 40 | 5 | 117 | 226 | 93 | 190 | 2.08e-24 | 100 |
| MS.gene07868.t1 | AT5G06510 | 51.351 | 111 | 40 | 5 | 117 | 226 | 93 | 190 | 2.08e-24 | 100 |
| MS.gene07868.t1 | AT5G06510 | 51.351 | 111 | 40 | 5 | 117 | 226 | 93 | 190 | 2.08e-24 | 100 |
| MS.gene07868.t1 | AT3G05690 | 46.667 | 135 | 50 | 6 | 109 | 235 | 90 | 210 | 3.62e-24 | 100 |
| MS.gene07868.t1 | AT5G06510 | 51.351 | 111 | 40 | 5 | 117 | 226 | 44 | 141 | 4.20e-24 | 98.2 |
| MS.gene07868.t1 | AT5G06510 | 54.369 | 103 | 33 | 5 | 125 | 226 | 6 | 95 | 8.19e-24 | 96.3 |
| MS.gene07868.t1 | AT5G06510 | 54.369 | 103 | 33 | 5 | 125 | 226 | 6 | 95 | 8.19e-24 | 96.3 |
| MS.gene07868.t1 | AT3G05690 | 46.667 | 135 | 50 | 6 | 109 | 235 | 127 | 247 | 9.30e-24 | 99.8 |
Find 0 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAAGTTTTTTCCTATA+CGG | + | 57448:21065-21084 | None:intergenic | 15.0% |
| !! | AATATTTGCAAGAAAAACTA+TGG | - | 57448:21700-21719 | MS.gene07868:CDS | 20.0% |
| !! | ATCATATTTATGTCTTTATC+TGG | - | 57448:21724-21743 | MS.gene07868:CDS | 20.0% |
| !! | ATTTAATTACGAATAGTTAC+CGG | + | 57448:20463-20482 | None:intergenic | 20.0% |
| !! | TGTATGTATATTTCAGAATT+CGG | + | 57448:22123-22142 | None:intergenic | 20.0% |
| !!! | AAATTCTATCTAAAATCTGT+TGG | - | 57448:20751-20770 | MS.gene07868:CDS | 20.0% |
| !!! | AATTCTATCTAAAATCTGTT+GGG | - | 57448:20752-20771 | MS.gene07868:CDS | 20.0% |
| !!! | TACAAAGTGTTTATAAATAG+AGG | + | 57448:21436-21455 | None:intergenic | 20.0% |
| ! | AAAGTAGATTATTAGAGATG+TGG | - | 57448:20545-20564 | MS.gene07868:CDS | 25.0% |
| ! | AATACTCATCAATATGCATT+AGG | + | 57448:21150-21169 | None:intergenic | 25.0% |
| ! | AATGAAGTGATACAAATTTG+TGG | - | 57448:20991-21010 | MS.gene07868:intron | 25.0% |
| ! | AGAATTCGTTCAAATTCAAA+AGG | + | 57448:21936-21955 | None:intergenic | 25.0% |
| ! | CATATATACTTACAAGTGAT+TGG | + | 57448:21320-21339 | None:intergenic | 25.0% |
| ! | CTGAAAATGAGTTTATAAGT+GGG | - | 57448:20855-20874 | MS.gene07868:intron | 25.0% |
| ! | GAATTACATCAAGTCTAAAT+AGG | + | 57448:20608-20627 | None:intergenic | 25.0% |
| ! | TGTTTATAGATTCTATTGGT+TGG | - | 57448:22034-22053 | MS.gene07868:intron | 25.0% |
| !! | GAAGTGTTTATAGATTCTAT+TGG | - | 57448:22030-22049 | MS.gene07868:intron | 25.0% |
| !! | TTGTATGTTTCTGATATTTG+AGG | - | 57448:21755-21774 | MS.gene07868:CDS | 25.0% |
| !!! | TTAATTTGTGATACGCTATT+TGG | + | 57448:21459-21478 | None:intergenic | 25.0% |
| !!! | TTGCAAATATTTTTGACACA+AGG | + | 57448:21691-21710 | None:intergenic | 25.0% |
| AAAAAGAGAAACACCTTTGT+AGG | - | 57448:21882-21901 | MS.gene07868:intron | 30.0% | |
| AACTAGTATTAGAAAGCTGT+TGG | - | 57448:21097-21116 | MS.gene07868:intron | 30.0% | |
| AACTTAACACATACATAAGG+CGG | + | 57448:21800-21819 | None:intergenic | 30.0% | |
| AGAACAAACTCGTCAAAAAT+CGG | - | 57448:22305-22324 | MS.gene07868:intron | 30.0% | |
| ATAAATCTCCCTTAGAGAAA+AGG | + | 57448:22353-22372 | None:intergenic | 30.0% | |
| ATTGAGTAGAAGAAGAATCT+TGG | + | 57448:20398-20417 | None:intergenic | 30.0% | |
| CCAAACTTAACACATACATA+AGG | + | 57448:21803-21822 | None:intergenic | 30.0% | |
| CCTGAAAATGAGTTTATAAG+TGG | - | 57448:20854-20873 | MS.gene07868:intron | 30.0% | |
| CCTTATGTATGTGTTAAGTT+TGG | - | 57448:21800-21819 | MS.gene07868:CDS | 30.0% | |
| GTATATATGTGTTTGTGTGT+TGG | - | 57448:21331-21350 | MS.gene07868:intron | 30.0% | |
| TAATTCAACCCCTACAAAAT+AGG | + | 57448:20902-20921 | None:intergenic | 30.0% | |
| TATTGATGAGTATTTGCTCT+AGG | - | 57448:21156-21175 | MS.gene07868:intron | 30.0% | |
| TCTTGAAATTGAAAACCTAG+TGG | + | 57448:20375-20394 | None:intergenic | 30.0% | |
| TGAGTACTCTCTTTGAATTT+GGG | + | 57448:20932-20951 | None:intergenic | 30.0% | |
| TTAAGAGTCACACAATTGAT+GGG | - | 57448:20825-20844 | MS.gene07868:CDS | 30.0% | |
| TTGTTATACTGGACAGAAAT+TGG | + | 57448:21183-21202 | None:intergenic | 30.0% | |
| ! | AATAGCATGTTTTCCTACAA+AGG | + | 57448:21898-21917 | None:intergenic | 30.0% |
| ! | AGTTAGATTTTCTGACATAG+AGG | + | 57448:20310-20329 | None:intergenic | 30.0% |
| ! | CAAGTAGAAAAGTATAGAGA+TGG | - | 57448:22572-22591 | MS.gene07868:CDS | 30.0% |
| ! | CCACTTATAAACTCATTTTC+AGG | + | 57448:20857-20876 | None:intergenic | 30.0% |
| ! | CTTCTAAGAAGCTAAGTAAA+AGG | + | 57448:22014-22033 | None:intergenic | 30.0% |
| ! | GCTAAGTAAAAGGCATAAAT+AGG | + | 57448:22004-22023 | None:intergenic | 30.0% |
| ! | GTAGCGGAATTTGAATAAAT+TGG | + | 57448:21484-21503 | None:intergenic | 30.0% |
| ! | TATTTTGTAGGGGTTGAATT+AGG | - | 57448:20901-20920 | MS.gene07868:intron | 30.0% |
| ! | TTCTGTTTCCTTTTCTCTAA+GGG | - | 57448:22342-22361 | MS.gene07868:intron | 30.0% |
| ! | TTTCTGTTTCCTTTTCTCTA+AGG | - | 57448:22341-22360 | MS.gene07868:intron | 30.0% |
| ! | TTTCTTATAGTTTGCCTTTC+AGG | - | 57448:21558-21577 | MS.gene07868:intron | 30.0% |
| AAACATTAAAGCCATGGTCT+TGG | + | 57448:22499-22518 | None:intergenic | 35.0% | |
| AAGCAGAGGAATTGTTATAC+TGG | + | 57448:21194-21213 | None:intergenic | 35.0% | |
| ACAAATCCTGCATATGAGAA+GGG | + | 57448:22691-22710 | None:intergenic | 35.0% | |
| ACAAGAGTCAAATGCAGATA+TGG | + | 57448:20491-20510 | None:intergenic | 35.0% | |
| ACATTATTCCGTGATCCATA+TGG | + | 57448:21637-21656 | None:intergenic | 35.0% | |
| AGAAAACATGATATCCACGA+AGG | + | 57448:20725-20744 | None:intergenic | 35.0% | |
| CATGCTATAAAAATCTTGCC+AGG | - | 57448:22141-22160 | MS.gene07868:intron | 35.0% | |
| GGTTCTTCACAAAGATTAAG+AGG | + | 57448:22214-22233 | None:intergenic | 35.0% | |
| GTGAGTACTCTCTTTGAATT+TGG | + | 57448:20933-20952 | None:intergenic | 35.0% | |
| GTTAAGAGTCACACAATTGA+TGG | - | 57448:20824-20843 | MS.gene07868:CDS | 35.0% | |
| TCAAGTAACTCAATGGCATT+TGG | + | 57448:22074-22093 | None:intergenic | 35.0% | |
| TCACAAAGATTAAGAGGCAA+AGG | + | 57448:22208-22227 | None:intergenic | 35.0% | |
| TCTTCTTCTACTCAATCAAC+TGG | - | 57448:20402-20421 | MS.gene07868:CDS | 35.0% | |
| TGCTTTGCATTCACGTATAT+TGG | + | 57448:22235-22254 | None:intergenic | 35.0% | |
| TGGTACATCAAGTAACTCAA+TGG | + | 57448:22081-22100 | None:intergenic | 35.0% | |
| TTAATGTTTCCACCACTACT+CGG | - | 57448:22510-22529 | MS.gene07868:intron | 35.0% | |
| TTGAGTTACTTGATGTACCA+TGG | - | 57448:22081-22100 | MS.gene07868:intron | 35.0% | |
| ! | ACAGTAAGTGTTGTCAATTG+TGG | - | 57448:21364-21383 | MS.gene07868:intron | 35.0% |
| ! | ACCTTACAAGCCTATTTTGT+AGG | - | 57448:20889-20908 | MS.gene07868:intron | 35.0% |
| ! | ATCTTATCTGGAAGTTGGTT+CGG | - | 57448:20431-20450 | MS.gene07868:CDS | 35.0% |
| ! | CCTTACAAGCCTATTTTGTA+GGG | - | 57448:20890-20909 | MS.gene07868:intron | 35.0% |
| ! | CTTACAAGCCTATTTTGTAG+GGG | - | 57448:20891-20910 | MS.gene07868:intron | 35.0% |
| AACTGGTGGTCAATCTTATC+TGG | - | 57448:20419-20438 | MS.gene07868:CDS | 40.0% | |
| AGCGACACTATAACATTGGA+AGG | + | 57448:21409-21428 | None:intergenic | 40.0% | |
| CATGCTGAGACATACTCTAA+TGG | - | 57448:21598-21617 | MS.gene07868:intron | 40.0% | |
| CCCTACAAAATAGGCTTGTA+AGG | + | 57448:20893-20912 | None:intergenic | 40.0% | |
| CGATAGCGACACTATAACAT+TGG | + | 57448:21413-21432 | None:intergenic | 40.0% | |
| CTCTGCATTGAATACCGTAT+AGG | - | 57448:21048-21067 | MS.gene07868:intron | 40.0% | |
| GACAAATCCTGCATATGAGA+AGG | + | 57448:22692-22711 | None:intergenic | 40.0% | |
| GGTCAATCTTATCTGGAAGT+TGG | - | 57448:20426-20445 | MS.gene07868:CDS | 40.0% | |
| GTCTACGTCTCATAATAGCA+TGG | + | 57448:22261-22280 | None:intergenic | 40.0% | |
| GTGATAGACAGAATTCACCA+TGG | + | 57448:22101-22120 | None:intergenic | 40.0% | |
| TAGAGTATGTCTCAGCATGA+GGG | + | 57448:21597-21616 | None:intergenic | 40.0% | |
| TCTTCTACTCAATCAACTGG+TGG | - | 57448:20405-20424 | MS.gene07868:CDS | 40.0% | |
| TGAAGTCGGATTCATGTTGT+TGG | + | 57448:22655-22674 | None:intergenic | 40.0% | |
| TGCAACAAGTCTAAACCACT+AGG | - | 57448:20357-20376 | MS.gene07868:CDS | 40.0% | |
| TGGAAATGTGCTGGAATCAA+GGG | - | 57448:22544-22563 | MS.gene07868:intron | 40.0% | |
| TGGTGGAAACATTAAAGCCA+TGG | + | 57448:22505-22524 | None:intergenic | 40.0% | |
| TGTTCAACACTTAGCGAAAC+CGG | - | 57448:21213-21232 | MS.gene07868:intron | 40.0% | |
| TTAGAGTATGTCTCAGCATG+AGG | + | 57448:21598-21617 | None:intergenic | 40.0% | |
| ! | GTAACCACATGATCTGAAGT+CGG | + | 57448:22669-22688 | None:intergenic | 40.0% |
| ! | TTTTCTCTCTTCTACCTTCG+TGG | - | 57448:20708-20727 | MS.gene07868:CDS | 40.0% |
| !! | ATGTCTAGTCTTGGATGCAA+GGG | - | 57448:20795-20814 | MS.gene07868:CDS | 40.0% |
| !! | ATTAGAAGCACTTGTGACGT+CGG | + | 57448:22618-22637 | None:intergenic | 40.0% |
| AAGAGGCAAAGGAATCCGAA+CGG | + | 57448:22197-22216 | None:intergenic | 45.0% | |
| ACCAAAAAGCTCCAAGACCA+TGG | - | 57448:22485-22504 | MS.gene07868:intron | 45.0% | |
| ACTAAAACGCTGTAGCGTAG+CGG | + | 57448:21500-21519 | None:intergenic | 45.0% | |
| ATCCATATGGAGCTGCTAGT+AGG | + | 57448:21624-21643 | None:intergenic | 45.0% | |
| CATGCATTGAAGAGAGCTAG+AGG | - | 57448:22440-22459 | MS.gene07868:intron | 45.0% | |
| CTAAAATCTGTTGGGCCACT+CGG | - | 57448:20760-20779 | MS.gene07868:CDS | 45.0% | |
| CTCTCTTCAATGCATGCAGA+TGG | + | 57448:22436-22455 | None:intergenic | 45.0% | |
| GAATCCGACTTCAGATCATG+TGG | - | 57448:22662-22681 | MS.gene07868:CDS | 45.0% | |
| GAATGCAACATGAGCCTGAA+AGG | + | 57448:21575-21594 | None:intergenic | 45.0% | |
| GATTCCAGCACATTTCCACT+CGG | + | 57448:22542-22561 | None:intergenic | 45.0% | |
| GTCACACAATTGATGGGATG+TGG | - | 57448:20831-20850 | MS.gene07868:CDS | 45.0% | |
| GTGGAAATGTGCTGGAATCA+AGG | - | 57448:22543-22562 | MS.gene07868:intron | 45.0% | |
| GTTAATCATGCTGAGCCAGT+AGG | - | 57448:22163-22182 | MS.gene07868:intron | 45.0% | |
| TAAAATCTGTTGGGCCACTC+GGG | - | 57448:20761-20780 | MS.gene07868:CDS | 45.0% | |
| TACTTTGCCTCCTTCTCAAC+TGG | - | 57448:21287-21306 | MS.gene07868:intron | 45.0% | |
| TAGCAGCTCCATATGGATCA+CGG | - | 57448:21626-21645 | MS.gene07868:intron | 45.0% | |
| TGCATCCAAGACTAGACATC+TGG | + | 57448:20794-20813 | None:intergenic | 45.0% | |
| TGGTTACCCTTCTCATATGC+AGG | - | 57448:22682-22701 | MS.gene07868:CDS | 45.0% | |
| TGGTTGTGATCCAGTTGAGA+AGG | + | 57448:21300-21319 | None:intergenic | 45.0% | |
| TTGTGATCCAGTTGAGAAGG+AGG | + | 57448:21297-21316 | None:intergenic | 45.0% | |
| !! | AGAGTGTGGAAGGTATCATC+AGG | - | 57448:21241-21260 | MS.gene07868:intron | 45.0% |
| !! | GAAGTTGGTTCGGAACAATC+CGG | - | 57448:20441-20460 | MS.gene07868:CDS | 45.0% |
| !! | GATGTCTAGTCTTGGATGCA+AGG | - | 57448:20794-20813 | MS.gene07868:CDS | 45.0% |
| !! | GCTAAGTGTTGAACAAGCAG+AGG | + | 57448:21208-21227 | None:intergenic | 45.0% |
| !! | TGTCTAGTCTTGGATGCAAG+GGG | - | 57448:20796-20815 | MS.gene07868:CDS | 45.0% |
| ACGCTCCAGATGTCTAGTCT+TGG | - | 57448:20786-20805 | MS.gene07868:CDS | 50.0% | |
| ACTTGTGACGTCGGAACAAG+TGG | + | 57448:22609-22628 | None:intergenic | 50.0% | |
| AGAGGCAAAGGAATCCGAAC+GGG | + | 57448:22196-22215 | None:intergenic | 50.0% | |
| CTGGCTCAGCATGATTAACC+TGG | + | 57448:22162-22181 | None:intergenic | 50.0% | |
| GAATCCGAGTGGAAATGTGC+TGG | - | 57448:22535-22554 | MS.gene07868:intron | 50.0% | |
| GATTCAGAACAAGTCCCCCA+TGG | + | 57448:20273-20292 | None:intergenic | 50.0% | |
| GGTATCATCAGGTCATCTGC+AGG | - | 57448:21252-21271 | MS.gene07868:intron | 50.0% | |
| TCAACACTTAGCGAAACCGG+CGG | - | 57448:21216-21235 | MS.gene07868:intron | 50.0% | |
| TGGCGCGACTCATGTAGATA+TGG | + | 57448:22416-22435 | None:intergenic | 50.0% | |
| TTGAAGAGAGCTAGAGGCTC+TGG | - | 57448:22446-22465 | MS.gene07868:intron | 50.0% | |
| ! | ATGAAGCACTCATGGCCATG+GGG | - | 57448:20255-20274 | MS.gene07868:CDS | 50.0% |
| ! | TGGGGGACTTGTTCTGAATC+TGG | - | 57448:20273-20292 | MS.gene07868:CDS | 50.0% |
| !! | GCCATGGTCTTGGAGCTTTT+TGG | + | 57448:22489-22508 | None:intergenic | 50.0% |
| ACCTTCCACACTCTTTCCGC+CGG | + | 57448:21235-21254 | None:intergenic | 55.0% | |
| ACTACTCGGCTGAATCCGAG+TGG | - | 57448:22524-22543 | MS.gene07868:intron | 55.0% | |
| ACTCGGATTCAGCCGAGTAG+TGG | + | 57448:22525-22544 | None:intergenic | 55.0% | |
| CAGGATTTGTCAGCCGATGC+CGG | - | 57448:22701-22720 | MS.gene07868:CDS | 55.0% | |
| CAGGTCATCTGCAGGAAGTC+AGG | - | 57448:21260-21279 | MS.gene07868:intron | 55.0% | |
| CAGTAGGAATGCCTCCCGTT+CGG | - | 57448:22179-22198 | MS.gene07868:intron | 55.0% | |
| GACGTCGGAACAAGTGGTTG+TGG | + | 57448:22603-22622 | None:intergenic | 55.0% | |
| GGCCTACTAGCAGCTCCATA+TGG | - | 57448:21619-21638 | MS.gene07868:intron | 55.0% | |
| ! | AAGAGAGCTAGAGGCTCTGG+TGG | - | 57448:22449-22468 | MS.gene07868:intron | 55.0% |
| ! | TGAAGCACTCATGGCCATGG+GGG | - | 57448:20256-20275 | MS.gene07868:CDS | 55.0% |
| ATTCCGACCACCACCACCAC+CGG | + | 57448:22723-22742 | None:intergenic | 60.0% | |
| CGAAACCGGCGGAAAGAGTG+TGG | - | 57448:21227-21246 | MS.gene07868:intron | 60.0% | |
| CGGATTCAGCCGAGTAGTGG+TGG | + | 57448:22522-22541 | None:intergenic | 60.0% | |
| GATTTGTCAGCCGATGCCGG+TGG | - | 57448:22704-22723 | MS.gene07868:CDS | 60.0% | |
| GGCAAAGGAATCCGAACGGG+AGG | + | 57448:22193-22212 | None:intergenic | 60.0% | |
| ! | ACCGGCGGAAAGAGTGTGGA+AGG | - | 57448:21231-21250 | MS.gene07868:intron | 60.0% |
| !! | CGAACGGGAGGCATTCCTAC+TGG | + | 57448:22181-22200 | None:intergenic | 60.0% |
| ACCACCACCACCACCGGCAT+CGG | + | 57448:22717-22736 | None:intergenic | 65.0% | |
| TTGTCAGCCGATGCCGGTGG+TGG | - | 57448:22707-22726 | MS.gene07868:CDS | 65.0% | |
| ! | CATCTGGAGCGTGACCCGAG+TGG | + | 57448:20778-20797 | None:intergenic | 65.0% |
| !! | ATGCCGGTGGTGGTGGTGGT+CGG | - | 57448:22717-22736 | MS.gene07868:CDS | 65.0% |
| ! | TCAGCCGATGCCGGTGGTGG+TGG | - | 57448:22710-22729 | MS.gene07868:CDS | 70.0% |
| !! | GCCGATGCCGGTGGTGGTGG+TGG | - | 57448:22713-22732 | MS.gene07868:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57448 | gene | 20255 | 22769 | 20255 | ID=MS.gene07868 |
| 57448 | mRNA | 20255 | 22769 | 20255 | ID=MS.gene07868.t1;Parent=MS.gene07868 |
| 57448 | exon | 22562 | 22769 | 22562 | ID=MS.gene07868.t1.exon1;Parent=MS.gene07868.t1 |
| 57448 | CDS | 22562 | 22769 | 22562 | ID=cds.MS.gene07868.t1;Parent=MS.gene07868.t1 |
| 57448 | exon | 21698 | 21846 | 21698 | ID=MS.gene07868.t1.exon2;Parent=MS.gene07868.t1 |
| 57448 | CDS | 21698 | 21846 | 21698 | ID=cds.MS.gene07868.t1;Parent=MS.gene07868.t1 |
| 57448 | exon | 21370 | 21444 | 21370 | ID=MS.gene07868.t1.exon3;Parent=MS.gene07868.t1 |
| 57448 | CDS | 21370 | 21444 | 21370 | ID=cds.MS.gene07868.t1;Parent=MS.gene07868.t1 |
| 57448 | exon | 20694 | 20861 | 20694 | ID=MS.gene07868.t1.exon4;Parent=MS.gene07868.t1 |
| 57448 | CDS | 20694 | 20861 | 20694 | ID=cds.MS.gene07868.t1;Parent=MS.gene07868.t1 |
| 57448 | exon | 20255 | 20611 | 20255 | ID=MS.gene07868.t1.exon5;Parent=MS.gene07868.t1 |
| 57448 | CDS | 20255 | 20611 | 20255 | ID=cds.MS.gene07868.t1;Parent=MS.gene07868.t1 |
| Gene Sequence |
| Protein sequence |
