Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08066.t1 | XP_003600455.1 | 84.2 | 284 | 41 | 2 | 1 | 283 | 1 | 281 | 5.10E-131 | 477.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08066.t1 | Q8L3W1 | 26.9 | 335 | 177 | 10 | 12 | 283 | 6 | 335 | 1.5e-22 | 108.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08066.t1 | G8A2Z2 | 84.2 | 284 | 41 | 2 | 1 | 283 | 1 | 281 | 3.7e-131 | 477.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08066.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08066.t1 | MTR_3g061370 | 84.155 | 284 | 41 | 2 | 1 | 283 | 1 | 281 | 1.43e-175 | 486 |
| MS.gene08066.t1 | MTR_3g061350 | 80.282 | 284 | 55 | 1 | 1 | 283 | 1 | 284 | 3.23e-169 | 469 |
| MS.gene08066.t1 | MTR_3g061320 | 74.912 | 283 | 67 | 2 | 1 | 283 | 1 | 279 | 2.82e-153 | 429 |
| MS.gene08066.t1 | MTR_3g061310 | 70.526 | 285 | 82 | 1 | 1 | 283 | 1 | 285 | 1.90e-146 | 412 |
| MS.gene08066.t1 | MTR_3g061330 | 79.365 | 252 | 49 | 3 | 1 | 250 | 1 | 251 | 3.16e-142 | 400 |
| MS.gene08066.t1 | MTR_3g061340 | 69.014 | 284 | 77 | 3 | 1 | 283 | 1 | 274 | 1.60e-139 | 394 |
| MS.gene08066.t1 | MTR_3g061290 | 74.843 | 159 | 40 | 0 | 1 | 159 | 1 | 159 | 3.69e-85 | 253 |
| MS.gene08066.t1 | MTR_3g061220 | 67.939 | 131 | 28 | 2 | 1 | 131 | 1 | 117 | 3.31e-56 | 177 |
| MS.gene08066.t1 | MTR_3g061300 | 68.595 | 121 | 38 | 0 | 162 | 282 | 2 | 122 | 9.92e-54 | 171 |
| MS.gene08066.t1 | MTR_8g103940 | 34.516 | 310 | 151 | 9 | 10 | 283 | 37 | 330 | 2.13e-48 | 168 |
| MS.gene08066.t1 | MTR_8g103940 | 25.714 | 280 | 173 | 11 | 12 | 283 | 242 | 494 | 1.68e-12 | 67.8 |
| MS.gene08066.t1 | MTR_7g050710 | 35.314 | 303 | 162 | 10 | 9 | 283 | 10 | 306 | 1.14e-47 | 162 |
| MS.gene08066.t1 | MTR_7g050560 | 36.042 | 283 | 170 | 5 | 9 | 283 | 10 | 289 | 1.37e-47 | 161 |
| MS.gene08066.t1 | MTR_1g035460 | 35.495 | 293 | 146 | 9 | 26 | 283 | 2 | 286 | 3.79e-47 | 162 |
| MS.gene08066.t1 | MTR_1g108780 | 35.714 | 294 | 138 | 8 | 25 | 283 | 12 | 289 | 8.79e-46 | 160 |
| MS.gene08066.t1 | MTR_1g108780 | 26.573 | 286 | 167 | 13 | 12 | 283 | 201 | 457 | 2.47e-14 | 73.2 |
| MS.gene08066.t1 | MTR_3g098790 | 33.898 | 295 | 169 | 9 | 9 | 283 | 10 | 298 | 1.15e-43 | 151 |
| MS.gene08066.t1 | MTR_7g050720 | 32.919 | 322 | 165 | 10 | 4 | 283 | 2 | 314 | 2.10e-42 | 148 |
| MS.gene08066.t1 | MTR_5g044670 | 30.662 | 287 | 182 | 6 | 12 | 282 | 16 | 301 | 1.03e-39 | 141 |
| MS.gene08066.t1 | MTR_7g050580 | 33.684 | 285 | 174 | 8 | 9 | 283 | 10 | 289 | 1.25e-39 | 140 |
| MS.gene08066.t1 | MTR_7g050590 | 31.058 | 293 | 152 | 9 | 26 | 283 | 2 | 279 | 2.41e-35 | 129 |
| MS.gene08066.t1 | MTR_1g035640 | 31.786 | 280 | 172 | 9 | 12 | 282 | 9 | 278 | 5.65e-32 | 123 |
| MS.gene08066.t1 | MTR_4g119990 | 30.719 | 306 | 173 | 12 | 10 | 283 | 13 | 311 | 8.73e-31 | 118 |
| MS.gene08066.t1 | MTR_6g061070 | 27.950 | 322 | 184 | 9 | 2 | 283 | 8 | 321 | 1.84e-28 | 113 |
| MS.gene08066.t1 | MTR_3g005490 | 29.137 | 278 | 151 | 7 | 12 | 283 | 21 | 258 | 1.46e-27 | 107 |
| MS.gene08066.t1 | MTR_3g005480 | 29.391 | 279 | 150 | 7 | 12 | 283 | 21 | 259 | 2.17e-27 | 107 |
| MS.gene08066.t1 | MTR_5g070440 | 27.437 | 277 | 166 | 7 | 12 | 283 | 21 | 267 | 8.96e-27 | 105 |
| MS.gene08066.t1 | MTR_1g035570 | 26.950 | 282 | 190 | 7 | 12 | 282 | 9 | 285 | 1.60e-26 | 107 |
| MS.gene08066.t1 | MTR_6g043890 | 27.740 | 292 | 167 | 9 | 10 | 270 | 13 | 291 | 4.76e-26 | 105 |
| MS.gene08066.t1 | MTR_3g005420 | 27.500 | 280 | 162 | 6 | 12 | 283 | 289 | 535 | 2.20e-23 | 99.8 |
| MS.gene08066.t1 | MTR_3g005420 | 24.731 | 279 | 138 | 9 | 12 | 277 | 40 | 259 | 2.99e-14 | 72.8 |
| MS.gene08066.t1 | MTR_1g035620 | 26.102 | 295 | 174 | 9 | 9 | 282 | 6 | 277 | 1.14e-22 | 97.1 |
| MS.gene08066.t1 | MTR_1g050845 | 25.177 | 282 | 181 | 8 | 9 | 282 | 6 | 265 | 2.06e-21 | 94.4 |
| MS.gene08066.t1 | MTR_1g034240 | 35.507 | 138 | 77 | 3 | 8 | 133 | 1 | 138 | 6.92e-21 | 92.0 |
| MS.gene08066.t1 | MTR_3g005460 | 27.119 | 295 | 174 | 8 | 1 | 283 | 251 | 516 | 9.49e-21 | 92.0 |
| MS.gene08066.t1 | MTR_3g005460 | 26.374 | 273 | 139 | 6 | 12 | 277 | 25 | 242 | 4.79e-19 | 87.0 |
| MS.gene08066.t1 | MTR_4g068320 | 32.576 | 132 | 79 | 2 | 12 | 133 | 6 | 137 | 3.72e-20 | 89.7 |
| MS.gene08066.t1 | MTR_7g050640 | 42.708 | 96 | 53 | 1 | 10 | 103 | 11 | 106 | 4.86e-20 | 83.6 |
| MS.gene08066.t1 | MTR_3g005495 | 27.798 | 277 | 137 | 7 | 12 | 277 | 243 | 467 | 1.07e-19 | 89.0 |
| MS.gene08066.t1 | MTR_3g005495 | 24.903 | 257 | 136 | 5 | 21 | 277 | 24 | 223 | 2.87e-15 | 75.9 |
| MS.gene08066.t1 | MTR_1g021360 | 25.773 | 291 | 190 | 9 | 10 | 280 | 182 | 466 | 7.93e-19 | 86.3 |
| MS.gene08066.t1 | MTR_1g035650 | 37.500 | 104 | 61 | 2 | 9 | 110 | 6 | 107 | 1.02e-18 | 82.8 |
| MS.gene08066.t1 | MTR_1g035520 | 29.358 | 327 | 170 | 16 | 5 | 282 | 68 | 382 | 1.92e-18 | 84.7 |
| MS.gene08066.t1 | MTR_1g035510 | 38.938 | 113 | 62 | 3 | 26 | 134 | 2 | 111 | 4.62e-18 | 81.3 |
| MS.gene08066.t1 | MTR_1g034210 | 37.168 | 113 | 66 | 3 | 7 | 117 | 3 | 112 | 1.11e-16 | 79.0 |
| MS.gene08066.t1 | MTR_1g033740 | 31.126 | 151 | 94 | 5 | 2 | 145 | 12 | 159 | 1.35e-16 | 76.6 |
| MS.gene08066.t1 | MTR_1g034210 | 37.168 | 113 | 66 | 3 | 7 | 117 | 3 | 112 | 1.71e-16 | 79.0 |
| MS.gene08066.t1 | MTR_1g034210 | 33.929 | 112 | 65 | 5 | 177 | 283 | 250 | 357 | 3.13e-11 | 63.5 |
| MS.gene08066.t1 | MTR_1g035440 | 39.423 | 104 | 60 | 2 | 8 | 108 | 11 | 114 | 2.77e-16 | 77.0 |
| MS.gene08066.t1 | MTR_1g035470 | 40.000 | 115 | 59 | 4 | 26 | 134 | 2 | 112 | 3.84e-16 | 73.9 |
| MS.gene08066.t1 | MTR_3g005440 | 31.884 | 138 | 92 | 1 | 13 | 148 | 23 | 160 | 9.19e-16 | 77.0 |
| MS.gene08066.t1 | MTR_3g005440 | 34.259 | 108 | 69 | 1 | 16 | 121 | 246 | 353 | 1.95e-13 | 70.5 |
| MS.gene08066.t1 | MTR_1g035500 | 32.624 | 141 | 84 | 5 | 2 | 134 | 15 | 152 | 6.24e-15 | 72.0 |
| MS.gene08066.t1 | MTR_1g035480 | 31.206 | 141 | 86 | 5 | 2 | 134 | 7 | 144 | 7.43e-15 | 71.6 |
| MS.gene08066.t1 | MTR_3g005420 | 24.731 | 279 | 138 | 9 | 12 | 277 | 21 | 240 | 2.58e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08066.t1 | AT3G18990 | 28.363 | 342 | 172 | 13 | 8 | 283 | 1 | 335 | 1.92e-33 | 125 |
| MS.gene08066.t1 | AT3G18990 | 28.363 | 342 | 172 | 13 | 8 | 283 | 1 | 335 | 4.92e-33 | 124 |
| MS.gene08066.t1 | AT1G49475 | 39.496 | 119 | 68 | 3 | 11 | 127 | 33 | 149 | 2.49e-18 | 81.3 |
| MS.gene08066.t1 | AT4G01580 | 33.333 | 138 | 84 | 2 | 11 | 146 | 29 | 160 | 1.33e-17 | 79.3 |
| MS.gene08066.t1 | AT3G18960 | 40.000 | 100 | 58 | 1 | 11 | 108 | 29 | 128 | 3.14e-17 | 78.2 |
| MS.gene08066.t1 | AT3G18960 | 40.000 | 100 | 58 | 1 | 11 | 108 | 29 | 128 | 3.57e-17 | 78.6 |
| MS.gene08066.t1 | AT4G33280 | 23.667 | 300 | 199 | 10 | 10 | 283 | 23 | 318 | 7.19e-15 | 73.9 |
| MS.gene08066.t1 | AT3G18960 | 42.857 | 84 | 48 | 0 | 25 | 108 | 8 | 91 | 8.44e-15 | 71.2 |
| MS.gene08066.t1 | AT1G49480 | 31.538 | 130 | 77 | 5 | 160 | 283 | 97 | 220 | 1.08e-13 | 69.3 |
| MS.gene08066.t1 | AT1G49480 | 31.538 | 130 | 77 | 5 | 160 | 283 | 97 | 220 | 1.08e-13 | 69.3 |
| MS.gene08066.t1 | AT1G49480 | 31.538 | 130 | 77 | 5 | 160 | 283 | 97 | 220 | 1.08e-13 | 69.3 |
| MS.gene08066.t1 | AT2G16210 | 25.606 | 289 | 176 | 12 | 12 | 280 | 19 | 288 | 3.68e-11 | 62.8 |
Find 51 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAACCCCTTTAAAATT+TGG | 0.181999 | 3.3:+49227391 | None:intergenic |
| ACACTAAATGGAAAATTTAT+TGG | 0.195816 | 3.3:-49228168 | MS.gene08066:CDS |
| TGATGAATCAGTTGAGATTT+TGG | 0.206026 | 3.3:-49227939 | MS.gene08066:CDS |
| TGTCTCTTTGTAAACTTTCT+TGG | 0.219902 | 3.3:+49228235 | None:intergenic |
| AGACTCCTGATGACACTAAA+TGG | 0.267004 | 3.3:-49228180 | MS.gene08066:CDS |
| TTGATTTGCTTCCAGATGAT+TGG | 0.329110 | 3.3:+49227582 | None:intergenic |
| ACTGATAAACAAGAAAGATT+TGG | 0.358474 | 3.3:-49227209 | MS.gene08066:CDS |
| CGGACTTTCTTATGTGTTTG+AGG | 0.377509 | 3.3:+49227866 | None:intergenic |
| TTTACTGAAAATTACTCTCT+TGG | 0.379721 | 3.3:-49228100 | MS.gene08066:CDS |
| TCCTTCAAACTAATCTTCAT+AGG | 0.391228 | 3.3:-49228551 | MS.gene08066:CDS |
| TCCTGAGCTCTAACATCCTT+TGG | 0.395829 | 3.3:+49227658 | None:intergenic |
| CTCTCTTGGACATGGCTGCT+TGG | 0.402665 | 3.3:-49228086 | MS.gene08066:CDS |
| TCCTATGAAGATTAGTTTGA+AGG | 0.404224 | 3.3:+49228550 | None:intergenic |
| TGATTTGCTTCCAGATGATT+GGG | 0.406973 | 3.3:+49227583 | None:intergenic |
| TCTCATACAGCCCAATCATC+TGG | 0.413662 | 3.3:-49227593 | MS.gene08066:CDS |
| AGATTTGGTTTGAAAGGGGT+TGG | 0.435761 | 3.3:-49228129 | MS.gene08066:CDS |
| AGAGAAAGTGGACTGAAATC+AGG | 0.441039 | 3.3:-49227250 | MS.gene08066:CDS |
| TGGTGAGATTTGGTTTGAAA+GGG | 0.445670 | 3.3:-49228134 | MS.gene08066:CDS |
| AAAGAACTTCATCAATGAAT+CGG | 0.459762 | 3.3:-49227681 | MS.gene08066:CDS |
| GTCGTCGCCTTTCCGCGGGC+TGG | 0.462371 | 3.3:-49227285 | MS.gene08066:CDS |
| ATGGTGAGATTTGGTTTGAA+AGG | 0.464155 | 3.3:-49228135 | MS.gene08066:CDS |
| TCAGGAGTCTTTATCACCAC+TGG | 0.464260 | 3.3:+49228193 | None:intergenic |
| AGAATGTGATGCTGCTGATT+GGG | 0.480788 | 3.3:-49227357 | MS.gene08066:CDS |
| AAGAATGTGATGCTGCTGAT+TGG | 0.482287 | 3.3:-49227358 | MS.gene08066:CDS |
| CTTATGTGTTTGAGGAGAAA+CGG | 0.483996 | 3.3:+49227874 | None:intergenic |
| TACTTATTTGCAAGAGAAAG+TGG | 0.484810 | 3.3:-49227262 | MS.gene08066:CDS |
| TCATCTGGAAGCAAATCAAC+TGG | 0.487387 | 3.3:-49227578 | MS.gene08066:intron |
| TAAAGGGGTTATTGAGAACA+AGG | 0.498536 | 3.3:-49227383 | MS.gene08066:CDS |
| GCCAAAGGATGTTAGAGCTC+AGG | 0.500995 | 3.3:-49227659 | MS.gene08066:CDS |
| TCTTGGACATGGCTGCTTGG+TGG | 0.517847 | 3.3:-49228083 | MS.gene08066:CDS |
| TTGGTGGTGTTTGAATATAA+AGG | 0.518126 | 3.3:-49228067 | MS.gene08066:CDS |
| CATATTTGACATGAATGCTA+TGG | 0.522338 | 3.3:-49228023 | MS.gene08066:CDS |
| AAATGGTCGTCGCCTTTCCG+CGG | 0.535987 | 3.3:-49227290 | MS.gene08066:CDS |
| AATGGTCGTCGCCTTTCCGC+GGG | 0.545483 | 3.3:-49227289 | MS.gene08066:CDS |
| TGTATGAGAACTGTGAAGAA+AGG | 0.560242 | 3.3:+49227607 | None:intergenic |
| CATAGAATTTCCTCTAGCCA+TGG | 0.569082 | 3.3:+49228599 | None:intergenic |
| TGCTGATTGGGAAAAGATCA+TGG | 0.586680 | 3.3:-49227345 | MS.gene08066:CDS |
| TGAATGGCTTAATCGGAAGA+AGG | 0.588393 | 3.3:-49227915 | MS.gene08066:CDS |
| ATAAGTACCAGCCCGCGGAA+AGG | 0.595441 | 3.3:+49227278 | None:intergenic |
| TTCATCAATGAATCGGCCAA+AGG | 0.600573 | 3.3:-49227674 | MS.gene08066:CDS |
| AAATATGTGTACATCAAACT+CGG | 0.606655 | 3.3:+49228039 | None:intergenic |
| TTTACAAAGAGACATGGAGT+TGG | 0.622876 | 3.3:-49228226 | MS.gene08066:CDS |
| TGTGTTTGAGGAGAAACGGA+AGG | 0.627724 | 3.3:+49227878 | None:intergenic |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3.3:-49228094 | MS.gene08066:CDS |
| GGTGAGATTTGGTTTGAAAG+GGG | 0.635152 | 3.3:-49228133 | MS.gene08066:CDS |
| TGCAAATAAGTACCAGCCCG+CGG | 0.652502 | 3.3:+49227273 | None:intergenic |
| ACTCTTTCATCCATGGCTAG+AGG | 0.653576 | 3.3:-49228609 | None:intergenic |
| AGAAAGTTTACAAAGAGACA+TGG | 0.659306 | 3.3:-49228232 | MS.gene08066:CDS |
| CAAACACATAAGAAAGTCCG+AGG | 0.666813 | 3.3:-49227863 | MS.gene08066:intron |
| AGTTGGTCTATCAAATCCAG+TGG | 0.699067 | 3.3:-49228209 | MS.gene08066:CDS |
| TGTGAAGAAAGGATTGCATG+AGG | 0.721141 | 3.3:+49227618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTGGAAAAAAATCAA+TGG | - | chr3.3:49227629-49227648 | MS.gene08066:CDS | 15.0% |
| !! | CTAAAGTAAATAATACTAAT+AGG | + | chr3.3:49227274-49227293 | None:intergenic | 15.0% |
| !!! | GCTACAAATTTTATTATATA+TGG | - | chr3.3:49227406-49227425 | MS.gene08066:intron | 15.0% |
| !! | ACACTAAATGGAAAATTTAT+TGG | - | chr3.3:49227615-49227634 | MS.gene08066:CDS | 20.0% |
| !! | TAAAAATTAAAGAACTCCTT+TGG | + | chr3.3:49227519-49227538 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCAGTATACATAA+TGG | - | chr3.3:49227962-49227981 | MS.gene08066:CDS | 20.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | - | chr3.3:49227639-49227658 | MS.gene08066:CDS | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+CGG | - | chr3.3:49228102-49228121 | MS.gene08066:CDS | 25.0% |
| ! | AAATATGTGTACATCAAACT+CGG | + | chr3.3:49227747-49227766 | None:intergenic | 25.0% |
| ! | ACTGATAAACAAGAAAGATT+TGG | - | chr3.3:49228574-49228593 | MS.gene08066:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | - | chr3.3:49227683-49227702 | MS.gene08066:CDS | 25.0% |
| !! | AGCATGTACCAAATTTTAAA+GGG | - | chr3.3:49228384-49228403 | MS.gene08066:intron | 25.0% |
| !!! | TCAATAACCCCTTTAAAATT+TGG | + | chr3.3:49228395-49228414 | None:intergenic | 25.0% |
| AGAAAGTTTACAAAGAGACA+TGG | - | chr3.3:49227551-49227570 | MS.gene08066:intron | 30.0% | |
| CATATTTGACATGAATGCTA+TGG | - | chr3.3:49227760-49227779 | MS.gene08066:intron | 30.0% | |
| CGTTCTTATGAGATCAAAAA+TGG | - | chr3.3:49228476-49228495 | MS.gene08066:intron | 30.0% | |
| TACTTATTTGCAAGAGAAAG+TGG | - | chr3.3:49228521-49228540 | MS.gene08066:intron | 30.0% | |
| TCCTTCAAACTAATCTTCAT+AGG | - | chr3.3:49227232-49227251 | MS.gene08066:CDS | 30.0% | |
| TGTCTCTTTGTAAACTTTCT+TGG | + | chr3.3:49227551-49227570 | None:intergenic | 30.0% | |
| ! | ATTTTCCATTTAGTGTCATC+AGG | + | chr3.3:49227611-49227630 | None:intergenic | 30.0% |
| ! | CAGCATGTACCAAATTTTAA+AGG | - | chr3.3:49228383-49228402 | MS.gene08066:intron | 30.0% |
| ! | TGATGAATCAGTTGAGATTT+TGG | - | chr3.3:49227844-49227863 | MS.gene08066:intron | 30.0% |
| ! | TTTTGGATGAATGGCTTAAT+CGG | - | chr3.3:49227861-49227880 | MS.gene08066:intron | 30.0% |
| !! | ATGATTTTGAAGAAACGGAT+GGG | + | chr3.3:49227213-49227232 | None:intergenic | 30.0% |
| !! | GAAGGATGATTTTGAAGAAA+CGG | + | chr3.3:49227218-49227237 | None:intergenic | 30.0% |
| !! | GCATGTACCAAATTTTAAAG+GGG | - | chr3.3:49228385-49228404 | MS.gene08066:intron | 30.0% |
| !! | TCCTATGAAGATTAGTTTGA+AGG | + | chr3.3:49227236-49227255 | None:intergenic | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | - | chr3.3:49227716-49227735 | MS.gene08066:intron | 30.0% |
| CTTATGTGTTTGAGGAGAAA+CGG | + | chr3.3:49227912-49227931 | None:intergenic | 35.0% | |
| GAAAATTACTCTCTTGGACA+TGG | - | chr3.3:49227689-49227708 | MS.gene08066:CDS | 35.0% | |
| TAAAGGGGTTATTGAGAACA+AGG | - | chr3.3:49228400-49228419 | MS.gene08066:intron | 35.0% | |
| TACATTGCACACATATATGC+AGG | - | chr3.3:49228059-49228078 | MS.gene08066:CDS | 35.0% | |
| TCCTTTGGTCACTAAGAAAA+AGG | + | chr3.3:49227504-49227523 | None:intergenic | 35.0% | |
| TGTATGAGAACTGTGAAGAA+AGG | + | chr3.3:49228179-49228198 | None:intergenic | 35.0% | |
| TGTGTGCAATGTAAAACTCT+TGG | + | chr3.3:49228052-49228071 | None:intergenic | 35.0% | |
| TTTACAAAGAGACATGGAGT+TGG | - | chr3.3:49227557-49227576 | MS.gene08066:intron | 35.0% | |
| ! | ACCTTTTTCTTAGTGACCAA+AGG | - | chr3.3:49227500-49227519 | MS.gene08066:intron | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+TGG | - | chr3.3:49227852-49227871 | MS.gene08066:intron | 35.0% |
| !! | ATGGTGAGATTTGGTTTGAA+AGG | - | chr3.3:49227648-49227667 | MS.gene08066:CDS | 35.0% |
| !! | GATGATTTTGAAGAAACGGA+TGG | + | chr3.3:49227214-49227233 | None:intergenic | 35.0% |
| !! | TGATTTGCTTCCAGATGATT+GGG | + | chr3.3:49228203-49228222 | None:intergenic | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+GGG | - | chr3.3:49227649-49227668 | MS.gene08066:CDS | 35.0% |
| !! | TTGATTTGCTTCCAGATGAT+TGG | + | chr3.3:49228204-49228223 | None:intergenic | 35.0% |
| AAGAATGTGATGCTGCTGAT+TGG | - | chr3.3:49228425-49228444 | MS.gene08066:intron | 40.0% | |
| ACATAAGAAAGTCCGAGGTT+TGG | - | chr3.3:49227925-49227944 | MS.gene08066:CDS | 40.0% | |
| AGACTCCTGATGACACTAAA+TGG | - | chr3.3:49227603-49227622 | MS.gene08066:CDS | 40.0% | |
| CAAACACATAAGAAAGTCCG+AGG | - | chr3.3:49227920-49227939 | MS.gene08066:CDS | 40.0% | |
| CAAGAAACCAAACCAAACCT+CGG | + | chr3.3:49227940-49227959 | None:intergenic | 40.0% | |
| CGGACTTTCTTATGTGTTTG+AGG | + | chr3.3:49227920-49227939 | None:intergenic | 40.0% | |
| TCATCTGGAAGCAAATCAAC+TGG | - | chr3.3:49228205-49228224 | MS.gene08066:CDS | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | - | chr3.3:49227868-49227887 | MS.gene08066:CDS | 40.0% | |
| TGTGAAGAAAGGATTGCATG+AGG | + | chr3.3:49228168-49228187 | None:intergenic | 40.0% | |
| TTCATCAATGAATCGGCCAA+AGG | - | chr3.3:49228109-49228128 | MS.gene08066:CDS | 40.0% | |
| ! | AGAATGTGATGCTGCTGATT+GGG | - | chr3.3:49228426-49228445 | MS.gene08066:intron | 40.0% |
| ! | AGTTGGTCTATCAAATCCAG+TGG | - | chr3.3:49227574-49227593 | MS.gene08066:intron | 40.0% |
| ! | TGCTGATTGGGAAAAGATCA+TGG | - | chr3.3:49228438-49228457 | MS.gene08066:intron | 40.0% |
| !! | AGAGAAAGTGGACTGAAATC+AGG | - | chr3.3:49228533-49228552 | MS.gene08066:intron | 40.0% |
| !! | AGATTTGGTTTGAAAGGGGT+TGG | - | chr3.3:49227654-49227673 | MS.gene08066:CDS | 40.0% |
| !! | GGTGAGATTTGGTTTGAAAG+GGG | - | chr3.3:49227650-49227669 | MS.gene08066:CDS | 40.0% |
| AGCAAATCAACTGGTAGGAG+AGG | - | chr3.3:49228214-49228233 | MS.gene08066:CDS | 45.0% | |
| CTGGAAGCAAATCAACTGGT+AGG | - | chr3.3:49228209-49228228 | MS.gene08066:CDS | 45.0% | |
| TCAGGAGTCTTTATCACCAC+TGG | + | chr3.3:49227593-49227612 | None:intergenic | 45.0% | |
| TCTCATACAGCCCAATCATC+TGG | - | chr3.3:49228190-49228209 | MS.gene08066:CDS | 45.0% | |
| TGTGTTTGAGGAGAAACGGA+AGG | + | chr3.3:49227908-49227927 | None:intergenic | 45.0% | |
| ! | AGAAAGTCCGAGGTTTGGTT+TGG | - | chr3.3:49227930-49227949 | MS.gene08066:CDS | 45.0% |
| ! | TCCTGAGCTCTAACATCCTT+TGG | + | chr3.3:49228128-49228147 | None:intergenic | 45.0% |
| GCCAAAGGATGTTAGAGCTC+AGG | - | chr3.3:49228124-49228143 | MS.gene08066:CDS | 50.0% | |
| TGCAAATAAGTACCAGCCCG+CGG | + | chr3.3:49228513-49228532 | None:intergenic | 50.0% | |
| AAATGGTCGTCGCCTTTCCG+CGG | - | chr3.3:49228493-49228512 | MS.gene08066:intron | 55.0% | |
| ATAAGTACCAGCCCGCGGAA+AGG | + | chr3.3:49228508-49228527 | None:intergenic | 55.0% | |
| CTCTCTTGGACATGGCTGCT+TGG | - | chr3.3:49227697-49227716 | MS.gene08066:CDS | 55.0% | |
| TCTTGGACATGGCTGCTTGG+TGG | - | chr3.3:49227700-49227719 | MS.gene08066:CDS | 55.0% | |
| AATGGTCGTCGCCTTTCCGC+GGG | - | chr3.3:49228494-49228513 | MS.gene08066:intron | 60.0% | |
| GTCGTCGCCTTTCCGCGGGC+TGG | - | chr3.3:49228498-49228517 | MS.gene08066:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 49227186 | 49228619 | 49227186 | ID=MS.gene08066 |
| chr3.3 | mRNA | 49227186 | 49228619 | 49227186 | ID=MS.gene08066.t1;Parent=MS.gene08066 |
| chr3.3 | exon | 49228548 | 49228619 | 49228548 | ID=MS.gene08066.t1.exon1;Parent=MS.gene08066.t1 |
| chr3.3 | CDS | 49228548 | 49228619 | 49228548 | ID=cds.MS.gene08066.t1;Parent=MS.gene08066.t1 |
| chr3.3 | exon | 49227864 | 49228263 | 49227864 | ID=MS.gene08066.t1.exon2;Parent=MS.gene08066.t1 |
| chr3.3 | CDS | 49227864 | 49228263 | 49227864 | ID=cds.MS.gene08066.t1;Parent=MS.gene08066.t1 |
| chr3.3 | exon | 49227579 | 49227724 | 49227579 | ID=MS.gene08066.t1.exon3;Parent=MS.gene08066.t1 |
| chr3.3 | CDS | 49227579 | 49227724 | 49227579 | ID=cds.MS.gene08066.t1;Parent=MS.gene08066.t1 |
| chr3.3 | exon | 49227186 | 49227419 | 49227186 | ID=MS.gene08066.t1.exon4;Parent=MS.gene08066.t1 |
| chr3.3 | CDS | 49227186 | 49227419 | 49227186 | ID=cds.MS.gene08066.t1;Parent=MS.gene08066.t1 |
| Gene Sequence |
| Protein sequence |
