Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08067.t1 | XP_003600455.1 | 77.9 | 285 | 58 | 3 | 1 | 284 | 1 | 281 | 7.90E-119 | 436.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08067.t1 | Q8L3W1 | 26.9 | 335 | 180 | 9 | 12 | 285 | 6 | 336 | 8.2e-24 | 112.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08067.t1 | G8A2Z2 | 77.9 | 285 | 58 | 3 | 1 | 284 | 1 | 281 | 5.7e-119 | 436.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08067.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08067.t1 | MTR_3g061370 | 77.895 | 285 | 58 | 3 | 1 | 284 | 1 | 281 | 1.78e-157 | 440 |
| MS.gene08067.t1 | MTR_3g061350 | 76.140 | 285 | 66 | 2 | 1 | 284 | 1 | 284 | 7.36e-155 | 434 |
| MS.gene08067.t1 | MTR_3g061330 | 80.556 | 252 | 47 | 2 | 1 | 251 | 1 | 251 | 2.75e-146 | 410 |
| MS.gene08067.t1 | MTR_3g061310 | 70.877 | 285 | 82 | 1 | 1 | 284 | 1 | 285 | 5.89e-145 | 409 |
| MS.gene08067.t1 | MTR_3g061320 | 72.535 | 284 | 73 | 3 | 1 | 284 | 1 | 279 | 7.30e-145 | 408 |
| MS.gene08067.t1 | MTR_3g061340 | 71.930 | 285 | 68 | 4 | 1 | 284 | 1 | 274 | 1.62e-144 | 407 |
| MS.gene08067.t1 | MTR_3g061290 | 77.358 | 159 | 36 | 0 | 1 | 159 | 1 | 159 | 4.52e-87 | 259 |
| MS.gene08067.t1 | MTR_3g061220 | 72.519 | 131 | 22 | 2 | 1 | 131 | 1 | 117 | 5.04e-59 | 184 |
| MS.gene08067.t1 | MTR_3g061300 | 66.129 | 124 | 41 | 1 | 162 | 285 | 2 | 124 | 1.01e-50 | 164 |
| MS.gene08067.t1 | MTR_8g103940 | 33.333 | 312 | 159 | 8 | 10 | 287 | 37 | 333 | 3.40e-49 | 170 |
| MS.gene08067.t1 | MTR_8g103940 | 36.522 | 115 | 68 | 3 | 174 | 285 | 383 | 495 | 7.32e-12 | 65.9 |
| MS.gene08067.t1 | MTR_1g035460 | 36.054 | 294 | 146 | 10 | 26 | 285 | 2 | 287 | 1.01e-46 | 161 |
| MS.gene08067.t1 | MTR_1g108780 | 32.550 | 298 | 151 | 8 | 21 | 285 | 10 | 290 | 4.14e-43 | 153 |
| MS.gene08067.t1 | MTR_7g050560 | 33.673 | 294 | 167 | 8 | 9 | 286 | 10 | 291 | 3.99e-42 | 147 |
| MS.gene08067.t1 | MTR_7g050710 | 32.899 | 307 | 173 | 9 | 7 | 286 | 8 | 308 | 2.42e-40 | 143 |
| MS.gene08067.t1 | MTR_5g044670 | 29.655 | 290 | 186 | 7 | 12 | 285 | 16 | 303 | 2.57e-37 | 135 |
| MS.gene08067.t1 | MTR_3g098790 | 31.271 | 291 | 187 | 6 | 9 | 286 | 10 | 300 | 6.09e-37 | 134 |
| MS.gene08067.t1 | MTR_7g050580 | 30.796 | 289 | 186 | 7 | 7 | 286 | 8 | 291 | 1.23e-33 | 125 |
| MS.gene08067.t1 | MTR_7g050720 | 29.524 | 315 | 188 | 11 | 4 | 285 | 2 | 315 | 8.17e-33 | 123 |
| MS.gene08067.t1 | MTR_5g070440 | 30.466 | 279 | 158 | 6 | 12 | 285 | 21 | 268 | 1.08e-30 | 116 |
| MS.gene08067.t1 | MTR_7g050590 | 28.470 | 281 | 180 | 5 | 26 | 286 | 2 | 281 | 6.40e-30 | 115 |
| MS.gene08067.t1 | MTR_1g035640 | 29.433 | 282 | 181 | 7 | 12 | 285 | 9 | 280 | 8.52e-30 | 117 |
| MS.gene08067.t1 | MTR_3g005480 | 28.674 | 279 | 155 | 6 | 12 | 285 | 21 | 260 | 3.36e-29 | 112 |
| MS.gene08067.t1 | MTR_3g005490 | 28.723 | 282 | 154 | 7 | 12 | 287 | 21 | 261 | 1.15e-28 | 110 |
| MS.gene08067.t1 | MTR_3g005420 | 29.964 | 277 | 162 | 5 | 12 | 285 | 289 | 536 | 4.68e-28 | 113 |
| MS.gene08067.t1 | MTR_3g005420 | 25.455 | 275 | 142 | 8 | 12 | 278 | 40 | 259 | 6.65e-17 | 80.9 |
| MS.gene08067.t1 | MTR_4g119990 | 31.629 | 313 | 162 | 13 | 10 | 284 | 13 | 311 | 4.99e-28 | 111 |
| MS.gene08067.t1 | MTR_1g035570 | 27.333 | 300 | 175 | 11 | 12 | 287 | 9 | 289 | 2.10e-25 | 104 |
| MS.gene08067.t1 | MTR_3g005460 | 27.797 | 295 | 173 | 7 | 1 | 284 | 251 | 516 | 1.41e-24 | 103 |
| MS.gene08067.t1 | MTR_3g005460 | 25.830 | 271 | 144 | 5 | 12 | 278 | 25 | 242 | 1.85e-19 | 88.6 |
| MS.gene08067.t1 | MTR_6g061070 | 26.970 | 330 | 171 | 10 | 2 | 283 | 13 | 320 | 1.61e-24 | 102 |
| MS.gene08067.t1 | MTR_6g043890 | 28.716 | 296 | 168 | 9 | 10 | 275 | 13 | 295 | 1.65e-24 | 101 |
| MS.gene08067.t1 | MTR_3g005495 | 30.515 | 272 | 137 | 8 | 12 | 278 | 243 | 467 | 6.60e-24 | 101 |
| MS.gene08067.t1 | MTR_3g005495 | 45.238 | 84 | 46 | 0 | 25 | 108 | 28 | 111 | 1.49e-18 | 85.9 |
| MS.gene08067.t1 | MTR_1g034240 | 36.957 | 138 | 75 | 3 | 8 | 133 | 1 | 138 | 8.16e-24 | 100 |
| MS.gene08067.t1 | MTR_4g068320 | 34.848 | 132 | 76 | 2 | 12 | 133 | 6 | 137 | 4.21e-22 | 95.9 |
| MS.gene08067.t1 | MTR_1g034210 | 39.823 | 113 | 63 | 3 | 7 | 117 | 3 | 112 | 5.48e-20 | 88.6 |
| MS.gene08067.t1 | MTR_7g050640 | 42.708 | 96 | 53 | 1 | 10 | 103 | 11 | 106 | 5.91e-20 | 83.6 |
| MS.gene08067.t1 | MTR_1g034210 | 39.823 | 113 | 63 | 3 | 7 | 117 | 3 | 112 | 9.16e-20 | 88.6 |
| MS.gene08067.t1 | MTR_1g035650 | 29.787 | 188 | 128 | 2 | 9 | 194 | 6 | 191 | 1.05e-19 | 85.5 |
| MS.gene08067.t1 | MTR_1g035620 | 24.567 | 289 | 187 | 9 | 9 | 283 | 6 | 277 | 1.09e-19 | 88.6 |
| MS.gene08067.t1 | MTR_3g005440 | 36.752 | 117 | 72 | 1 | 13 | 127 | 23 | 139 | 3.33e-19 | 87.4 |
| MS.gene08067.t1 | MTR_3g005440 | 38.384 | 99 | 61 | 0 | 22 | 120 | 254 | 352 | 5.54e-16 | 78.2 |
| MS.gene08067.t1 | MTR_1g035520 | 27.974 | 311 | 175 | 11 | 15 | 283 | 79 | 382 | 2.86e-18 | 84.3 |
| MS.gene08067.t1 | MTR_1g035440 | 40.385 | 104 | 59 | 2 | 8 | 108 | 11 | 114 | 1.34e-17 | 80.5 |
| MS.gene08067.t1 | MTR_1g035510 | 38.938 | 113 | 62 | 3 | 26 | 134 | 2 | 111 | 2.65e-17 | 79.3 |
| MS.gene08067.t1 | MTR_3g005420 | 25.899 | 278 | 137 | 10 | 12 | 278 | 21 | 240 | 4.69e-17 | 81.3 |
| MS.gene08067.t1 | MTR_1g050845 | 34.167 | 120 | 69 | 3 | 9 | 120 | 6 | 123 | 1.74e-16 | 80.1 |
| MS.gene08067.t1 | MTR_1g033740 | 28.218 | 202 | 115 | 8 | 2 | 196 | 12 | 190 | 1.27e-15 | 73.9 |
| MS.gene08067.t1 | MTR_1g021270 | 20.120 | 333 | 205 | 6 | 22 | 293 | 27 | 359 | 3.34e-15 | 75.9 |
| MS.gene08067.t1 | MTR_1g021360 | 21.875 | 288 | 206 | 6 | 10 | 281 | 182 | 466 | 7.76e-15 | 74.7 |
| MS.gene08067.t1 | MTR_1g035480 | 31.206 | 141 | 86 | 4 | 2 | 134 | 7 | 144 | 3.07e-14 | 70.1 |
| MS.gene08067.t1 | MTR_1g035470 | 36.842 | 114 | 64 | 3 | 26 | 134 | 2 | 112 | 3.21e-14 | 68.9 |
| MS.gene08067.t1 | MTR_1g035500 | 31.206 | 141 | 86 | 4 | 2 | 134 | 15 | 152 | 3.80e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08067.t1 | AT3G18990 | 26.471 | 340 | 184 | 10 | 8 | 285 | 1 | 336 | 2.07e-32 | 122 |
| MS.gene08067.t1 | AT3G18990 | 26.471 | 340 | 184 | 10 | 8 | 285 | 1 | 336 | 4.03e-32 | 122 |
| MS.gene08067.t1 | AT4G01580 | 33.333 | 138 | 84 | 2 | 11 | 146 | 29 | 160 | 1.77e-19 | 84.7 |
| MS.gene08067.t1 | AT1G49475 | 38.843 | 121 | 70 | 3 | 11 | 129 | 33 | 151 | 9.21e-19 | 82.4 |
| MS.gene08067.t1 | AT3G18960 | 39.000 | 100 | 59 | 1 | 11 | 108 | 29 | 128 | 1.42e-17 | 79.3 |
| MS.gene08067.t1 | AT3G18960 | 39.000 | 100 | 59 | 1 | 11 | 108 | 29 | 128 | 1.53e-17 | 79.7 |
| MS.gene08067.t1 | AT4G33280 | 25.175 | 286 | 183 | 9 | 10 | 270 | 23 | 302 | 1.04e-15 | 76.6 |
| MS.gene08067.t1 | AT3G18960 | 41.667 | 84 | 49 | 0 | 25 | 108 | 8 | 91 | 8.32e-15 | 71.2 |
| MS.gene08067.t1 | AT1G49480 | 28.682 | 129 | 85 | 4 | 160 | 285 | 97 | 221 | 4.82e-12 | 64.7 |
| MS.gene08067.t1 | AT1G49480 | 28.682 | 129 | 85 | 4 | 160 | 285 | 97 | 221 | 4.82e-12 | 64.7 |
| MS.gene08067.t1 | AT1G49480 | 28.682 | 129 | 85 | 4 | 160 | 285 | 97 | 221 | 4.82e-12 | 64.7 |
Find 50 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACCACATAAGAAAGTTAA+AGG | 0.201598 | 3.3:-49235028 | MS.gene08067:intron |
| TGTCTCCTAGTAAACTTATT+TGG | 0.219584 | 3.3:+49235400 | None:intergenic |
| GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | 3.3:-49235333 | MS.gene08067:CDS |
| TCCTGAGCTCTAGCATCTTT+TGG | 0.280232 | 3.3:+49234341 | None:intergenic |
| CAATCCTTTGAAGATTAGTT+TGG | 0.289306 | 3.3:+49235707 | None:intergenic |
| AGACTCCTGATGGCACTAAA+TGG | 0.296213 | 3.3:-49235345 | MS.gene08067:CDS |
| CTCTCTTGGACATGGCTGTT+TGG | 0.307883 | 3.3:-49235251 | MS.gene08067:CDS |
| GGTGAGATTTGGTTTGAAAA+TGG | 0.311641 | 3.3:-49235298 | MS.gene08067:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.354240 | 3.3:-49235265 | MS.gene08067:CDS |
| AAAGAACTTCATCAATGAAT+TGG | 0.387908 | 3.3:-49234364 | MS.gene08067:CDS |
| TATGTAACTGCAGATTTAAA+AGG | 0.392361 | 3.3:-49234121 | MS.gene08067:CDS |
| TCTTAGATGAATGGCTTAAT+CGG | 0.403352 | 3.3:-49235087 | MS.gene08067:CDS |
| AATCTATTTCCACTGCATTC+CGG | 0.411258 | 3.3:+49235179 | None:intergenic |
| CACTTGAGATCTTAGATGAA+TGG | 0.431142 | 3.3:-49235096 | MS.gene08067:CDS |
| ACTTTCCATTTAGTGCCATC+AGG | 0.440549 | 3.3:+49235340 | None:intergenic |
| AGTATGTGATTCTGCAGATT+GGG | 0.463556 | 3.3:-49234078 | MS.gene08067:CDS |
| AAACCTTTAACTTTCTTATG+TGG | 0.464229 | 3.3:+49235025 | None:intergenic |
| TCCTTTGAAGATTAGTTTGG+AGG | 0.466963 | 3.3:+49235710 | None:intergenic |
| ACTTCAAACAGATACATTAA+CGG | 0.476013 | 3.3:+49233877 | None:intergenic |
| TTCACTTTCGCTTGCAAACA+AGG | 0.476076 | 3.3:+49233982 | None:intergenic |
| TCAAAGACACAAACATCTCT+TGG | 0.480177 | 3.3:+49233953 | None:intergenic |
| AGATTTGGTTTGAAAATGGT+TGG | 0.487548 | 3.3:-49235294 | MS.gene08067:CDS |
| AAATATGTGTACATCAAACT+TGG | 0.487598 | 3.3:+49235204 | None:intergenic |
| AAATACCAAATAAGTTTACT+AGG | 0.488511 | 3.3:-49235405 | MS.gene08067:CDS |
| TTGGTGGTGTTTGAATATAA+AGG | 0.491592 | 3.3:-49235232 | MS.gene08067:CDS |
| TGCAGATTGGGAAAAGATCA+TGG | 0.498577 | 3.3:-49234066 | MS.gene08067:CDS |
| GATATAATTTCCTTTAGCCA+TGG | 0.504996 | 3.3:+49235759 | None:intergenic |
| TTAACTTTCTTATGTGGTCG+AGG | 0.505436 | 3.3:+49235031 | None:intergenic |
| TCTTGGACATGGCTGTTTGG+TGG | 0.505898 | 3.3:-49235248 | MS.gene08067:CDS |
| ACTCCATCATCCATGGCTAA+AGG | 0.511990 | 3.3:-49235769 | None:intergenic |
| TGTGGTCGAGGAGAAGCTAA+TGG | 0.512745 | 3.3:+49235043 | None:intergenic |
| GCCAAAAGATGCTAGAGCTC+AGG | 0.513948 | 3.3:-49234342 | MS.gene08067:CDS |
| CCAGCTTACTATCTACTGTA+TGG | 0.515143 | 3.3:+49234261 | None:intergenic |
| AATGGTTTCTATCTATCGGC+GGG | 0.522564 | 3.3:-49234010 | MS.gene08067:CDS |
| GAGTATGTGATTCTGCAGAT+TGG | 0.526064 | 3.3:-49234079 | MS.gene08067:CDS |
| TTGATGTACACATATTTGAC+CGG | 0.536461 | 3.3:-49235198 | MS.gene08067:CDS |
| TCAGGAGTCTTTATCAACAC+TGG | 0.545485 | 3.3:+49235358 | None:intergenic |
| GTTTCTATCTATCGGCGGGT+TGG | 0.546695 | 3.3:-49234006 | MS.gene08067:CDS |
| TCCTCCAAACTAATCTTCAA+AGG | 0.552905 | 3.3:-49235711 | MS.gene08067:CDS |
| TGAATGGCTTAATCGGAAGA+AGG | 0.573439 | 3.3:-49235080 | MS.gene08067:CDS |
| AAATGGTTTCTATCTATCGG+CGG | 0.576380 | 3.3:-49234011 | MS.gene08067:CDS |
| CCATACAGTAGATAGTAAGC+TGG | 0.603183 | 3.3:-49234261 | MS.gene08067:intron |
| TTACTATCTACTGTATGGTG+AGG | 0.604910 | 3.3:+49234266 | None:intergenic |
| AGGAGTTATTGAGAACAAAG+AGG | 0.607683 | 3.3:-49234101 | MS.gene08067:CDS |
| CATATTTGACCGGAATGCAG+TGG | 0.622074 | 3.3:-49235188 | MS.gene08067:CDS |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3.3:-49235259 | MS.gene08067:CDS |
| AATAAGTTTACTAGGAGACA+TGG | 0.640204 | 3.3:-49235397 | MS.gene08067:CDS |
| GTGTTGATAAAGACTCCTGA+TGG | 0.643737 | 3.3:-49235355 | MS.gene08067:CDS |
| ATCGGAAGAAGGCTAGACAA+AGG | 0.662228 | 3.3:-49235069 | MS.gene08067:CDS |
| GAAATTGATCTGTTCTAACG+AGG | 0.726190 | 3.3:-49234038 | MS.gene08067:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGCAAATAAAAATAATT+TGG | + | chr3.3:49235032-49235051 | None:intergenic | 10.0% |
| !! | ATATATTATAGTGATTGATA+AGG | - | chr3.3:49235477-49235496 | MS.gene08067:intron | 15.0% |
| !! | CTTAAGTAAATATTATTGAT+AGG | + | chr3.3:49233964-49233983 | None:intergenic | 15.0% |
| !! | TATATATGTTAGTAGAAATT+TGG | - | chr3.3:49234885-49234904 | MS.gene08067:intron | 15.0% |
| !!! | AAAAATAATTTTTGGTTGAA+GGG | + | chr3.3:49234798-49234817 | None:intergenic | 15.0% |
| !!! | AAACTTTACATTTAAAATGA+AGG | - | chr3.3:49234732-49234751 | MS.gene08067:intron | 15.0% |
| !!! | AACTTTACATTTAAAATGAA+GGG | - | chr3.3:49234733-49234752 | MS.gene08067:intron | 15.0% |
| !!! | GAAGAATGAAAAATAATTTT+TGG | + | chr3.3:49234806-49234825 | None:intergenic | 15.0% |
| !!! | GATGCTATTTATTTAATAAA+AGG | - | chr3.3:49235139-49235158 | MS.gene08067:CDS | 15.0% |
| !!! | TATTTTCTGTTTACAATATT+AGG | - | chr3.3:49234045-49234064 | MS.gene08067:CDS | 15.0% |
| !! | AAAACATTAGAGAACATATT+TGG | + | chr3.3:49235211-49235230 | None:intergenic | 20.0% |
| !! | AAATACCAAATAAGTTTACT+AGG | - | chr3.3:49234232-49234251 | MS.gene08067:intron | 20.0% |
| !! | GTTTATTGGAAAAAAATCAA+TGG | - | chr3.3:49234318-49234337 | MS.gene08067:CDS | 20.0% |
| !! | TAAAAATGGTTTCTATCTAT+CGG | - | chr3.3:49235623-49235642 | MS.gene08067:intron | 20.0% |
| !! | TAAAAATTAAAAAACCCCTT+TGG | + | chr3.3:49234208-49234227 | None:intergenic | 20.0% |
| !! | TTTACAAGAATTGTGAAAAA+AGG | + | chr3.3:49235350-49235369 | None:intergenic | 20.0% |
| !!! | AATCTTTTAGTCCAAATTAT+TGG | + | chr3.3:49234852-49234871 | None:intergenic | 20.0% |
| !!! | GAAAAATAATTTTTGGTTGA+AGG | + | chr3.3:49234799-49234818 | None:intergenic | 20.0% |
| !!! | TAGCACAAGAAATTTTATTA+TGG | - | chr3.3:49234095-49234114 | MS.gene08067:CDS | 20.0% |
| !!! | TTAATAACACTTTTGTTATG+TGG | - | chr3.3:49234756-49234775 | MS.gene08067:intron | 20.0% |
| !!! | TTTTCTTTCATTATGCATAA+TGG | - | chr3.3:49234651-49234670 | MS.gene08067:intron | 20.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | - | chr3.3:49234328-49234347 | MS.gene08067:CDS | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+TGG | - | chr3.3:49235273-49235292 | MS.gene08067:CDS | 25.0% |
| ! | AAAGTTCATGTCTTCAAAAA+AGG | - | chr3.3:49235735-49235754 | MS.gene08067:CDS | 25.0% |
| ! | AAATATGTGTACATCAAACT+TGG | + | chr3.3:49234436-49234455 | None:intergenic | 25.0% |
| ! | AAGAATTGTGAAAAAAGGAT+TGG | + | chr3.3:49235345-49235364 | None:intergenic | 25.0% |
| ! | AAGTTCATGTCTTCAAAAAA+GGG | - | chr3.3:49235736-49235755 | MS.gene08067:CDS | 25.0% |
| ! | ACATAAGAAAGTTAAAGGTT+TGG | - | chr3.3:49234614-49234633 | MS.gene08067:intron | 25.0% |
| ! | GTATTTATACATAGAATTGC+AGG | + | chr3.3:49235435-49235454 | None:intergenic | 25.0% |
| ! | TATGTAACTGCAGATTTAAA+AGG | - | chr3.3:49235516-49235535 | MS.gene08067:intron | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | - | chr3.3:49234372-49234391 | MS.gene08067:CDS | 25.0% |
| !! | AAACCTTTAACTTTCTTATG+TGG | + | chr3.3:49234615-49234634 | None:intergenic | 25.0% |
| !! | AAATTATTGGTTGAGTCTTT+GGG | + | chr3.3:49234839-49234858 | None:intergenic | 25.0% |
| !! | ATTGCAGAATATATTTTGCA+CGG | + | chr3.3:49235080-49235099 | None:intergenic | 25.0% |
| AATAAGTTTACTAGGAGACA+TGG | - | chr3.3:49234240-49234259 | MS.gene08067:intron | 30.0% | |
| ACATCAATTACCATCAAAGT+AGG | + | chr3.3:49234972-49234991 | None:intergenic | 30.0% | |
| AGATGAAACTGCTTGTAATT+TGG | - | chr3.3:49234999-49235018 | MS.gene08067:intron | 30.0% | |
| CAAAGACTCAACCAATAATT+TGG | - | chr3.3:49234838-49234857 | MS.gene08067:intron | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | - | chr3.3:49234304-49234323 | MS.gene08067:CDS | 30.0% | |
| TATACATAGAATTGCAGGAA+TGG | + | chr3.3:49235430-49235449 | None:intergenic | 30.0% | |
| TCTTAGATGAATGGCTTAAT+CGG | - | chr3.3:49234550-49234569 | MS.gene08067:intron | 30.0% | |
| TGTCTCCTAGTAAACTTATT+TGG | + | chr3.3:49234240-49234259 | None:intergenic | 30.0% | |
| TTGATGTACACATATTTGAC+CGG | - | chr3.3:49234439-49234458 | MS.gene08067:intron | 30.0% | |
| ! | CAAATTATTGGTTGAGTCTT+TGG | + | chr3.3:49234840-49234859 | None:intergenic | 30.0% |
| ! | CAATCCTTTGAAGATTAGTT+TGG | + | chr3.3:49233933-49233952 | None:intergenic | 30.0% |
| ! | TCATGAATCTTGATGTTTTC+AGG | + | chr3.3:49235176-49235195 | None:intergenic | 30.0% |
| !! | AGATTTGGTTTGAAAATGGT+TGG | - | chr3.3:49234343-49234362 | MS.gene08067:CDS | 30.0% |
| !! | ATGATTTTGAAGAAACGGAT+GGG | + | chr3.3:49233907-49233926 | None:intergenic | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | - | chr3.3:49234405-49234424 | MS.gene08067:intron | 30.0% |
| AAATGGTTTCTATCTATCGG+CGG | - | chr3.3:49235626-49235645 | MS.gene08067:intron | 35.0% | |
| AATCTATTTCCACTGCATTC+CGG | + | chr3.3:49234461-49234480 | None:intergenic | 35.0% | |
| AGGAGTTATTGAGAACAAAG+AGG | - | chr3.3:49235536-49235555 | MS.gene08067:intron | 35.0% | |
| AGTATGTGATTCTGCAGATT+GGG | - | chr3.3:49235559-49235578 | MS.gene08067:intron | 35.0% | |
| CACTTGAGATCTTAGATGAA+TGG | - | chr3.3:49234541-49234560 | MS.gene08067:intron | 35.0% | |
| CGACCACATAAGAAAGTTAA+AGG | - | chr3.3:49234609-49234628 | MS.gene08067:intron | 35.0% | |
| GAAAATTACTCTCTTGGACA+TGG | - | chr3.3:49234378-49234397 | MS.gene08067:CDS | 35.0% | |
| GAAATTGATCTGTTCTAACG+AGG | - | chr3.3:49235599-49235618 | MS.gene08067:intron | 35.0% | |
| TATATTGCACACATATACGC+AGG | - | chr3.3:49235230-49235249 | MS.gene08067:CDS | 35.0% | |
| TCAAAGACACAAACATCTCT+TGG | + | chr3.3:49235687-49235706 | None:intergenic | 35.0% | |
| TCCTCCAAACTAATCTTCAA+AGG | - | chr3.3:49233926-49233945 | MS.gene08067:CDS | 35.0% | |
| TGTTCTAACGAGGCTAAAAA+TGG | - | chr3.3:49235609-49235628 | MS.gene08067:intron | 35.0% | |
| TTAACTTTCTTATGTGGTCG+AGG | + | chr3.3:49234609-49234628 | None:intergenic | 35.0% | |
| TTACTATCTACTGTATGGTG+AGG | + | chr3.3:49235374-49235393 | None:intergenic | 35.0% | |
| ! | ACCTTTTTCTTAGTGACCAA+AGG | - | chr3.3:49234189-49234208 | MS.gene08067:intron | 35.0% |
| ! | CCTTTTTCTTAGTGACCAAA+GGG | - | chr3.3:49234190-49234209 | MS.gene08067:intron | 35.0% |
| ! | CTTTTTCTTAGTGACCAAAG+GGG | - | chr3.3:49234191-49234210 | MS.gene08067:intron | 35.0% |
| !! | CTTTTGTTATGTGGCAACTT+TGG | - | chr3.3:49234765-49234784 | MS.gene08067:intron | 35.0% |
| !! | GATGATTTTGAAGAAACGGA+TGG | + | chr3.3:49233908-49233927 | None:intergenic | 35.0% |
| !! | GGAGGATGATTTTGAAGAAA+CGG | + | chr3.3:49233912-49233931 | None:intergenic | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+TGG | - | chr3.3:49234339-49234358 | MS.gene08067:CDS | 35.0% |
| !! | TCCTTTGAAGATTAGTTTGG+AGG | + | chr3.3:49233930-49233949 | None:intergenic | 35.0% |
| AATGGTTTCTATCTATCGGC+GGG | - | chr3.3:49235627-49235646 | MS.gene08067:intron | 40.0% | |
| ACTTTCCATTTAGTGCCATC+AGG | + | chr3.3:49234300-49234319 | None:intergenic | 40.0% | |
| CCAGCTTACTATCTACTGTA+TGG | + | chr3.3:49235379-49235398 | None:intergenic | 40.0% | |
| CCATACAGTAGATAGTAAGC+TGG | - | chr3.3:49235376-49235395 | MS.gene08067:CDS | 40.0% | |
| CCCTTTGGTCACTAAGAAAA+AGG | + | chr3.3:49234193-49234212 | None:intergenic | 40.0% | |
| GAGTATGTGATTCTGCAGAT+TGG | - | chr3.3:49235558-49235577 | MS.gene08067:intron | 40.0% | |
| TCAGGAGTCTTTATCAACAC+TGG | + | chr3.3:49234282-49234301 | None:intergenic | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | - | chr3.3:49234557-49234576 | MS.gene08067:intron | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | - | chr3.3:49235571-49235590 | MS.gene08067:intron | 40.0% | |
| TTCACTTTCGCTTGCAAACA+AGG | + | chr3.3:49235658-49235677 | None:intergenic | 40.0% | |
| TTGCATGTGTGATGTGTACA+TGG | + | chr3.3:49234003-49234022 | None:intergenic | 40.0% | |
| ! | GTGTTGATAAAGACTCCTGA+TGG | - | chr3.3:49234282-49234301 | MS.gene08067:CDS | 40.0% |
| !! | TTTTGAAGAAACGGATGGGA+AGG | + | chr3.3:49233903-49233922 | None:intergenic | 40.0% |
| AATTGCGCTGCCTACTTTGA+TGG | - | chr3.3:49234959-49234978 | MS.gene08067:intron | 45.0% | |
| AGACTCCTGATGGCACTAAA+TGG | - | chr3.3:49234292-49234311 | MS.gene08067:CDS | 45.0% | |
| ATCAAAGTAGGCAGCGCAAT+TGG | + | chr3.3:49234960-49234979 | None:intergenic | 45.0% | |
| ATCGGAAGAAGGCTAGACAA+AGG | - | chr3.3:49234568-49234587 | MS.gene08067:intron | 45.0% | |
| CATATTTGACCGGAATGCAG+TGG | - | chr3.3:49234449-49234468 | MS.gene08067:intron | 45.0% | |
| !! | TCCTGAGCTCTAGCATCTTT+TGG | + | chr3.3:49235299-49235318 | None:intergenic | 45.0% |
| CTCTCTTGGACATGGCTGTT+TGG | - | chr3.3:49234386-49234405 | MS.gene08067:CDS | 50.0% | |
| GCCAAAAGATGCTAGAGCTC+AGG | - | chr3.3:49235295-49235314 | MS.gene08067:CDS | 50.0% | |
| GGCAGCGCAATTGGTAAACT+AGG | + | chr3.3:49234951-49234970 | None:intergenic | 50.0% | |
| GTTTCTATCTATCGGCGGGT+TGG | - | chr3.3:49235631-49235650 | MS.gene08067:intron | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | - | chr3.3:49234389-49234408 | MS.gene08067:intron | 50.0% | |
| TGTGGTCGAGGAGAAGCTAA+TGG | + | chr3.3:49234597-49234616 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 49233880 | 49235779 | 49233880 | ID=MS.gene08067 |
| chr3.3 | mRNA | 49233880 | 49235779 | 49233880 | ID=MS.gene08067.t1;Parent=MS.gene08067 |
| chr3.3 | exon | 49235708 | 49235779 | 49235708 | ID=MS.gene08067.t1.exon1;Parent=MS.gene08067.t1 |
| chr3.3 | CDS | 49235708 | 49235779 | 49235708 | ID=cds.MS.gene08067.t1;Parent=MS.gene08067.t1 |
| chr3.3 | exon | 49235029 | 49235428 | 49235029 | ID=MS.gene08067.t1.exon2;Parent=MS.gene08067.t1 |
| chr3.3 | CDS | 49235029 | 49235428 | 49235029 | ID=cds.MS.gene08067.t1;Parent=MS.gene08067.t1 |
| chr3.3 | exon | 49234262 | 49234407 | 49234262 | ID=MS.gene08067.t1.exon3;Parent=MS.gene08067.t1 |
| chr3.3 | CDS | 49234262 | 49234407 | 49234262 | ID=cds.MS.gene08067.t1;Parent=MS.gene08067.t1 |
| chr3.3 | exon | 49233880 | 49234143 | 49233880 | ID=MS.gene08067.t1.exon4;Parent=MS.gene08067.t1 |
| chr3.3 | CDS | 49233880 | 49234143 | 49233880 | ID=cds.MS.gene08067.t1;Parent=MS.gene08067.t1 |
| Gene Sequence |
| Protein sequence |
