Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08068.t1 | XP_003600455.1 | 81.7 | 284 | 48 | 2 | 1 | 283 | 1 | 281 | 4.20E-125 | 457.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08068.t1 | Q8L3W1 | 26.9 | 335 | 177 | 8 | 12 | 283 | 6 | 335 | 1.1e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08068.t1 | G8A2Z2 | 81.7 | 284 | 48 | 2 | 1 | 283 | 1 | 281 | 3.0e-125 | 457.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08068.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08068.t1 | MTR_3g061350 | 80.986 | 284 | 53 | 1 | 1 | 283 | 1 | 284 | 3.20e-169 | 469 |
| MS.gene08068.t1 | MTR_3g061370 | 81.690 | 284 | 48 | 2 | 1 | 283 | 1 | 281 | 5.12e-166 | 461 |
| MS.gene08068.t1 | MTR_3g061330 | 78.486 | 251 | 53 | 1 | 1 | 250 | 1 | 251 | 1.71e-142 | 400 |
| MS.gene08068.t1 | MTR_3g061340 | 71.831 | 284 | 69 | 4 | 1 | 283 | 1 | 274 | 2.37e-141 | 399 |
| MS.gene08068.t1 | MTR_3g061310 | 71.329 | 286 | 78 | 3 | 1 | 283 | 1 | 285 | 8.66e-141 | 398 |
| MS.gene08068.t1 | MTR_3g061320 | 72.535 | 284 | 72 | 4 | 1 | 283 | 1 | 279 | 1.01e-140 | 397 |
| MS.gene08068.t1 | MTR_3g061290 | 72.515 | 171 | 45 | 2 | 1 | 170 | 1 | 170 | 7.83e-83 | 248 |
| MS.gene08068.t1 | MTR_3g061300 | 71.901 | 121 | 34 | 0 | 162 | 282 | 2 | 122 | 2.10e-58 | 183 |
| MS.gene08068.t1 | MTR_3g061220 | 69.466 | 131 | 26 | 2 | 1 | 131 | 1 | 117 | 5.82e-55 | 174 |
| MS.gene08068.t1 | MTR_1g035460 | 34.589 | 292 | 150 | 8 | 26 | 283 | 2 | 286 | 7.86e-46 | 159 |
| MS.gene08068.t1 | MTR_8g103940 | 33.871 | 310 | 153 | 10 | 10 | 283 | 37 | 330 | 3.47e-42 | 151 |
| MS.gene08068.t1 | MTR_8g103940 | 38.384 | 99 | 53 | 3 | 189 | 283 | 400 | 494 | 4.04e-12 | 66.6 |
| MS.gene08068.t1 | MTR_1g108780 | 32.765 | 293 | 148 | 8 | 25 | 283 | 12 | 289 | 6.01e-40 | 144 |
| MS.gene08068.t1 | MTR_1g108780 | 32.456 | 114 | 72 | 3 | 174 | 283 | 345 | 457 | 4.94e-11 | 63.2 |
| MS.gene08068.t1 | MTR_7g050710 | 33.546 | 313 | 171 | 11 | 1 | 283 | 1 | 306 | 9.41e-40 | 141 |
| MS.gene08068.t1 | MTR_7g050560 | 32.872 | 289 | 179 | 6 | 5 | 283 | 6 | 289 | 1.16e-37 | 135 |
| MS.gene08068.t1 | MTR_3g098790 | 31.142 | 289 | 185 | 7 | 9 | 283 | 10 | 298 | 9.21e-37 | 133 |
| MS.gene08068.t1 | MTR_7g050580 | 32.776 | 299 | 175 | 8 | 1 | 283 | 1 | 289 | 4.49e-35 | 129 |
| MS.gene08068.t1 | MTR_5g044670 | 29.431 | 299 | 170 | 11 | 12 | 282 | 16 | 301 | 2.36e-34 | 127 |
| MS.gene08068.t1 | MTR_7g050720 | 31.429 | 315 | 169 | 10 | 9 | 283 | 7 | 314 | 1.70e-33 | 124 |
| MS.gene08068.t1 | MTR_4g119990 | 28.713 | 303 | 183 | 11 | 10 | 283 | 13 | 311 | 2.07e-30 | 117 |
| MS.gene08068.t1 | MTR_7g050590 | 28.058 | 278 | 180 | 5 | 26 | 283 | 2 | 279 | 1.21e-28 | 111 |
| MS.gene08068.t1 | MTR_3g005480 | 29.682 | 283 | 144 | 8 | 12 | 283 | 21 | 259 | 2.56e-28 | 109 |
| MS.gene08068.t1 | MTR_1g035640 | 29.643 | 280 | 178 | 7 | 12 | 282 | 9 | 278 | 5.09e-28 | 112 |
| MS.gene08068.t1 | MTR_1g035570 | 28.231 | 294 | 171 | 10 | 12 | 282 | 9 | 285 | 2.66e-26 | 107 |
| MS.gene08068.t1 | MTR_6g043890 | 28.276 | 290 | 168 | 9 | 10 | 270 | 13 | 291 | 1.43e-24 | 101 |
| MS.gene08068.t1 | MTR_5g070440 | 27.719 | 285 | 155 | 8 | 12 | 283 | 21 | 267 | 1.54e-24 | 99.8 |
| MS.gene08068.t1 | MTR_3g005490 | 28.369 | 282 | 148 | 8 | 12 | 283 | 21 | 258 | 2.08e-23 | 96.7 |
| MS.gene08068.t1 | MTR_3g005420 | 28.826 | 281 | 157 | 8 | 12 | 283 | 289 | 535 | 1.43e-22 | 97.4 |
| MS.gene08068.t1 | MTR_3g005420 | 37.624 | 101 | 60 | 2 | 12 | 109 | 40 | 140 | 7.25e-13 | 68.9 |
| MS.gene08068.t1 | MTR_6g061070 | 25.545 | 321 | 191 | 7 | 2 | 282 | 8 | 320 | 3.15e-21 | 93.2 |
| MS.gene08068.t1 | MTR_1g035620 | 27.336 | 289 | 178 | 12 | 9 | 282 | 6 | 277 | 1.63e-19 | 87.8 |
| MS.gene08068.t1 | MTR_3g005495 | 27.106 | 273 | 144 | 7 | 12 | 277 | 243 | 467 | 5.11e-19 | 87.0 |
| MS.gene08068.t1 | MTR_3g005495 | 39.773 | 88 | 53 | 0 | 21 | 108 | 24 | 111 | 1.65e-15 | 76.6 |
| MS.gene08068.t1 | MTR_1g035650 | 28.500 | 200 | 127 | 4 | 9 | 200 | 6 | 197 | 4.13e-18 | 80.9 |
| MS.gene08068.t1 | MTR_1g035440 | 42.157 | 102 | 56 | 2 | 10 | 108 | 13 | 114 | 1.23e-17 | 80.5 |
| MS.gene08068.t1 | MTR_7g050640 | 40.625 | 96 | 55 | 1 | 10 | 103 | 11 | 106 | 2.00e-17 | 76.6 |
| MS.gene08068.t1 | MTR_4g068320 | 32.576 | 132 | 79 | 2 | 12 | 133 | 6 | 137 | 2.74e-17 | 81.6 |
| MS.gene08068.t1 | MTR_4g068320 | 33.846 | 130 | 75 | 5 | 160 | 283 | 263 | 387 | 3.28e-11 | 63.5 |
| MS.gene08068.t1 | MTR_1g050845 | 26.573 | 286 | 172 | 12 | 9 | 282 | 6 | 265 | 4.69e-17 | 81.6 |
| MS.gene08068.t1 | MTR_1g035510 | 38.053 | 113 | 63 | 3 | 26 | 134 | 2 | 111 | 1.26e-16 | 77.4 |
| MS.gene08068.t1 | MTR_3g005460 | 25.694 | 288 | 169 | 8 | 10 | 283 | 260 | 516 | 1.36e-16 | 79.7 |
| MS.gene08068.t1 | MTR_3g005460 | 26.740 | 273 | 138 | 6 | 12 | 277 | 25 | 242 | 1.51e-16 | 79.7 |
| MS.gene08068.t1 | MTR_1g034240 | 36.111 | 108 | 65 | 2 | 8 | 111 | 1 | 108 | 1.77e-16 | 79.3 |
| MS.gene08068.t1 | MTR_1g035520 | 26.506 | 332 | 168 | 11 | 5 | 282 | 73 | 382 | 3.37e-16 | 78.2 |
| MS.gene08068.t1 | MTR_3g005440 | 37.500 | 96 | 60 | 0 | 13 | 108 | 23 | 118 | 1.54e-15 | 76.6 |
| MS.gene08068.t1 | MTR_3g005440 | 40.000 | 95 | 55 | 1 | 16 | 108 | 246 | 340 | 8.18e-15 | 74.3 |
| MS.gene08068.t1 | MTR_1g035480 | 32.624 | 141 | 84 | 4 | 2 | 134 | 7 | 144 | 5.49e-15 | 72.0 |
| MS.gene08068.t1 | MTR_1g033740 | 31.126 | 151 | 94 | 5 | 2 | 145 | 12 | 159 | 1.08e-14 | 71.2 |
| MS.gene08068.t1 | MTR_1g035470 | 38.596 | 114 | 62 | 3 | 26 | 134 | 2 | 112 | 2.61e-14 | 68.9 |
| MS.gene08068.t1 | MTR_1g021360 | 23.973 | 292 | 194 | 9 | 10 | 280 | 182 | 466 | 2.76e-14 | 72.8 |
| MS.gene08068.t1 | MTR_3g005420 | 37.624 | 101 | 60 | 2 | 12 | 109 | 21 | 121 | 5.94e-13 | 68.9 |
| MS.gene08068.t1 | MTR_1g035500 | 31.915 | 141 | 85 | 4 | 2 | 134 | 15 | 152 | 9.73e-13 | 65.9 |
| MS.gene08068.t1 | MTR_1g034210 | 35.185 | 108 | 65 | 3 | 5 | 110 | 1 | 105 | 1.14e-12 | 67.4 |
| MS.gene08068.t1 | MTR_1g034210 | 35.185 | 108 | 65 | 3 | 5 | 110 | 1 | 105 | 1.54e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08068.t1 | AT3G18990 | 27.059 | 340 | 179 | 9 | 8 | 283 | 1 | 335 | 6.72e-31 | 118 |
| MS.gene08068.t1 | AT3G18990 | 27.059 | 340 | 179 | 9 | 8 | 283 | 1 | 335 | 1.94e-30 | 117 |
| MS.gene08068.t1 | AT1G49475 | 36.691 | 139 | 74 | 3 | 11 | 136 | 33 | 170 | 1.31e-18 | 82.0 |
| MS.gene08068.t1 | AT4G01580 | 35.088 | 114 | 70 | 2 | 11 | 120 | 29 | 142 | 8.15e-16 | 74.3 |
| MS.gene08068.t1 | AT3G18960 | 37.000 | 100 | 61 | 1 | 11 | 108 | 29 | 128 | 4.69e-15 | 72.8 |
| MS.gene08068.t1 | AT3G18960 | 37.000 | 100 | 61 | 1 | 11 | 108 | 29 | 128 | 5.57e-15 | 72.0 |
| MS.gene08068.t1 | AT1G49480 | 30.233 | 129 | 80 | 3 | 160 | 283 | 97 | 220 | 9.23e-14 | 69.3 |
| MS.gene08068.t1 | AT1G49480 | 30.233 | 129 | 80 | 3 | 160 | 283 | 97 | 220 | 9.23e-14 | 69.3 |
| MS.gene08068.t1 | AT1G49480 | 30.233 | 129 | 80 | 3 | 160 | 283 | 97 | 220 | 9.23e-14 | 69.3 |
| MS.gene08068.t1 | AT3G18960 | 39.286 | 84 | 51 | 0 | 25 | 108 | 8 | 91 | 1.04e-12 | 65.5 |
| MS.gene08068.t1 | AT4G33280 | 23.179 | 302 | 198 | 10 | 10 | 283 | 23 | 318 | 1.84e-12 | 67.0 |
Find 53 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGAATCAGTTGAGATTT+TGG | 0.191329 | 3.3:+49240879 | MS.gene08068:CDS |
| GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | 3.3:+49240650 | MS.gene08068:CDS |
| AAAGAACTTCATCAATAAAT+TGG | 0.266413 | 3.3:+49241141 | MS.gene08068:CDS |
| AGACTACTGATGGCACTAAA+TGG | 0.292817 | 3.3:+49240638 | MS.gene08068:CDS |
| AATCTATTTCTAGTGCATTC+TGG | 0.311928 | 3.3:-49240804 | None:intergenic |
| ACTGATCAACAAGAAAGATT+TGG | 0.353736 | 3.3:+49241543 | MS.gene08068:CDS |
| TTCTTCAAACTAATCTTCAT+AGG | 0.362211 | 3.3:+49240276 | MS.gene08068:CDS |
| TGGAGAGATTTGGTTTGAAA+AGG | 0.378673 | 3.3:+49240684 | MS.gene08068:CDS |
| TTTACTGAATATTACTCTCT+TGG | 0.385393 | 3.3:+49240718 | MS.gene08068:CDS |
| CTCTCTTGGACATGGCTGCT+TGG | 0.402665 | 3.3:+49240732 | MS.gene08068:CDS |
| GGAGAGATTTGGTTTGAAAA+GGG | 0.411021 | 3.3:+49240685 | MS.gene08068:CDS |
| CTACTCATCTGGTAGAAAAT+CGG | 0.421938 | 3.3:+49241240 | MS.gene08068:CDS |
| AGTGGAAGTGGACTGAAATC+AGG | 0.429019 | 3.3:+49241502 | MS.gene08068:CDS |
| GAAGAATGATCTTGAAGAAA+CGG | 0.439712 | 3.3:-49240259 | None:intergenic |
| AGAATGTGGTACTGCAGATT+GGG | 0.448452 | 3.3:+49241395 | MS.gene08068:CDS |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.448481 | 3.3:+49240689 | MS.gene08068:CDS |
| AAGTTTGATGTATACATACT+TGG | 0.450789 | 3.3:+49240781 | MS.gene08068:CDS |
| TCTCATAAAGCCTACTCATC+TGG | 0.455995 | 3.3:+49241229 | MS.gene08068:CDS |
| AAGAATGTGGTACTGCAGAT+TGG | 0.459475 | 3.3:+49241394 | MS.gene08068:CDS |
| GAAATTACTTCGTTGCTATG+AGG | 0.474974 | 3.3:+49241435 | MS.gene08068:CDS |
| TCAATAACCCCATTTAAAAG+TGG | 0.503683 | 3.3:-49241361 | None:intergenic |
| CGACGACATAAGAAAGTTCG+AGG | 0.503833 | 3.3:+49240955 | MS.gene08068:CDS |
| AAATGGGGTTATTGAGAACA+AGG | 0.504796 | 3.3:+49241369 | MS.gene08068:CDS |
| TCTTGGACATGGCTGCTTGG+TGG | 0.517847 | 3.3:+49240735 | MS.gene08068:CDS |
| TTGGTGGTGTTTGAATATAA+AGG | 0.518126 | 3.3:+49240751 | MS.gene08068:CDS |
| GCCACAGGATGCTAGAGCTC+AGG | 0.519514 | 3.3:+49241163 | MS.gene08068:CDS |
| TGGTACTGCAGATTGGGAAA+AGG | 0.536643 | 3.3:+49241401 | MS.gene08068:CDS |
| GGCTTAATCGGAAGAAGGCT+AGG | 0.536744 | 3.3:+49240908 | MS.gene08068:CDS |
| TCAGTAGTCTTTATCAACAC+TGG | 0.537149 | 3.3:-49240625 | None:intergenic |
| TGTCTACTAGTAAACTTACT+TGG | 0.541700 | 3.3:-49240583 | None:intergenic |
| TGTCGTCGAGGAGAAACAAA+AGG | 0.549605 | 3.3:-49240940 | None:intergenic |
| TGCAGATTGGGAAAAGGTCA+TGG | 0.561983 | 3.3:+49241407 | MS.gene08068:CDS |
| AAGTATGTATACATCAAACT+TGG | 0.563066 | 3.3:-49240779 | None:intergenic |
| GCCAACCCGCGGAAAAGCGA+CGG | 0.564559 | 3.3:-49241468 | None:intergenic |
| TTCATCAATAAATTGGCCAC+AGG | 0.565636 | 3.3:+49241148 | MS.gene08068:CDS |
| AAATTACTTCGTTGCTATGA+GGG | 0.569144 | 3.3:+49241436 | MS.gene08068:CDS |
| ATGATCTTGAAGAAACGGAT+GGG | 0.579896 | 3.3:-49240254 | None:intergenic |
| TGATCTTGAAGAAACGGATG+GGG | 0.586893 | 3.3:-49240253 | None:intergenic |
| TGAATGGCTTAATCGGAAGA+AGG | 0.588393 | 3.3:+49240903 | MS.gene08068:CDS |
| TTTACTAGTAGACATGGAGT+TGG | 0.590530 | 3.3:+49240592 | MS.gene08068:CDS |
| TCCTGAGCTCTAGCATCCTG+TGG | 0.590768 | 3.3:-49241164 | None:intergenic |
| GATAGAGATTCCTCTAGCCA+TGG | 0.595315 | 3.3:-49240228 | None:intergenic |
| AATGATCTTGAAGAAACGGA+TGG | 0.610158 | 3.3:-49240255 | None:intergenic |
| GATTGGGAAAAGGTCATGGA+AGG | 0.619399 | 3.3:+49241411 | MS.gene08068:CDS |
| ATCGGAAGAAGGCTAGGCAA+AGG | 0.622199 | 3.3:+49240914 | MS.gene08068:CDS |
| CAAACTCCATCCATGGCTAG+AGG | 0.626890 | 3.3:+49240218 | None:intergenic |
| GAATATTACTCTCTTGGACA+TGG | 0.627547 | 3.3:+49240724 | MS.gene08068:CDS |
| GTGTTGATAAAGACTACTGA+TGG | 0.636125 | 3.3:+49240628 | MS.gene08068:CDS |
| AGTAAGTTTACTAGTAGACA+TGG | 0.640204 | 3.3:+49240586 | MS.gene08068:CDS |
| TCTTGAAGAAACGGATGGGG+AGG | 0.644974 | 3.3:-49240250 | None:intergenic |
| CGAACTTTCTTATGTCGTCG+AGG | 0.659272 | 3.3:-49240952 | None:intergenic |
| TCATCTGGTAGAAAATCGGA+TGG | 0.661350 | 3.3:+49241244 | MS.gene08068:CDS |
| TGAGAACAAGGATAAGAATG+TGG | 0.664188 | 3.3:+49241381 | MS.gene08068:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAATAATACTAATATAAT+AGG | - | chr3.3:49240314-49240333 | None:intergenic | 10.0% |
| !! | GTTTATTGGAAAAAAATTAA+TGG | + | chr3.3:49240664-49240683 | MS.gene08068:CDS | 15.0% |
| !! | AAAAAATTAATGGAGAGATT+TGG | + | chr3.3:49240674-49240693 | MS.gene08068:CDS | 20.0% |
| !! | AAAGAACTTCATCAATAAAT+TGG | + | chr3.3:49241141-49241160 | MS.gene08068:CDS | 20.0% |
| !! | ACAGAAAAAAAATTAACTCT+TGG | - | chr3.3:49241076-49241095 | None:intergenic | 20.0% |
| !! | ATACAATTATTCTTTCTAGA+AGG | - | chr3.3:49240510-49240529 | None:intergenic | 20.0% |
| !! | TGTTGTGATTATTATAATGA+TGG | + | chr3.3:49241314-49241333 | MS.gene08068:intron | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | - | chr3.3:49241218-49241237 | None:intergenic | 20.0% |
| !!! | TAGCACTAGAAATTTTATTA+TGG | + | chr3.3:49240447-49240466 | MS.gene08068:intron | 20.0% |
| !!! | TTCTTTTCAGTATACATAAT+GGG | + | chr3.3:49240998-49241017 | MS.gene08068:intron | 20.0% |
| !!! | TTTCTTTTCAGTATACATAA+TGG | + | chr3.3:49240997-49241016 | MS.gene08068:intron | 20.0% |
| ! | AAGTATGTATACATCAAACT+TGG | - | chr3.3:49240782-49240801 | None:intergenic | 25.0% |
| ! | AAGTTTGATGTATACATACT+TGG | + | chr3.3:49240781-49240800 | MS.gene08068:CDS | 25.0% |
| ! | TAAAAATTAAAGAACCCCTT+TGG | - | chr3.3:49240554-49240573 | None:intergenic | 25.0% |
| ! | TTCTTCAAACTAATCTTCAT+AGG | + | chr3.3:49240276-49240295 | MS.gene08068:CDS | 25.0% |
| ! | TTTACTGAATATTACTCTCT+TGG | + | chr3.3:49240718-49240737 | MS.gene08068:CDS | 25.0% |
| AAATTACTTCGTTGCTATGA+GGG | + | chr3.3:49241436-49241455 | MS.gene08068:CDS | 30.0% | |
| ACTGATCAACAAGAAAGATT+TGG | + | chr3.3:49241543-49241562 | MS.gene08068:CDS | 30.0% | |
| AGTAAGTTTACTAGTAGACA+TGG | + | chr3.3:49240586-49240605 | MS.gene08068:CDS | 30.0% | |
| GAAGAATGATCTTGAAGAAA+CGG | - | chr3.3:49240262-49240281 | None:intergenic | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | + | chr3.3:49240650-49240669 | MS.gene08068:CDS | 30.0% | |
| TCAATAACCCCATTTAAAAG+TGG | - | chr3.3:49241364-49241383 | None:intergenic | 30.0% | |
| TGTCTACTAGTAAACTTACT+TGG | - | chr3.3:49240586-49240605 | None:intergenic | 30.0% | |
| ! | ATTCTTTCTAGAAGGTAAAG+TGG | - | chr3.3:49240502-49240521 | None:intergenic | 30.0% |
| ! | TGATGAATCAGTTGAGATTT+TGG | + | chr3.3:49240879-49240898 | MS.gene08068:CDS | 30.0% |
| ! | TTTTGGATGAATGGCTTAAT+CGG | + | chr3.3:49240896-49240915 | MS.gene08068:CDS | 30.0% |
| !! | AATCTATTTCTAGTGCATTC+TGG | - | chr3.3:49240807-49240826 | None:intergenic | 30.0% |
| !! | AGTGTGTACCACTTTTAAAT+GGG | + | chr3.3:49241353-49241372 | MS.gene08068:intron | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3.3:49240751-49240770 | MS.gene08068:CDS | 30.0% |
| AAATGGGGTTATTGAGAACA+AGG | + | chr3.3:49241369-49241388 | MS.gene08068:CDS | 35.0% | |
| AATGATCTTGAAGAAACGGA+TGG | - | chr3.3:49240258-49240277 | None:intergenic | 35.0% | |
| ACATAAGAAAGTTCGAGGTT+TGG | + | chr3.3:49240960-49240979 | MS.gene08068:intron | 35.0% | |
| ATGATCTTGAAGAAACGGAT+GGG | - | chr3.3:49240257-49240276 | None:intergenic | 35.0% | |
| CTACTCATCTGGTAGAAAAT+CGG | + | chr3.3:49241240-49241259 | MS.gene08068:CDS | 35.0% | |
| GAAATTACTTCGTTGCTATG+AGG | + | chr3.3:49241435-49241454 | MS.gene08068:CDS | 35.0% | |
| GAATATTACTCTCTTGGACA+TGG | + | chr3.3:49240724-49240743 | MS.gene08068:CDS | 35.0% | |
| TACATTGCACACATATATGC+AGG | + | chr3.3:49241098-49241117 | MS.gene08068:intron | 35.0% | |
| TCAGTAGTCTTTATCAACAC+TGG | - | chr3.3:49240628-49240647 | None:intergenic | 35.0% | |
| TGAGAACAAGGATAAGAATG+TGG | + | chr3.3:49241381-49241400 | MS.gene08068:CDS | 35.0% | |
| TTCATCAATAAATTGGCCAC+AGG | + | chr3.3:49241148-49241167 | MS.gene08068:CDS | 35.0% | |
| TTTACTAGTAGACATGGAGT+TGG | + | chr3.3:49240592-49240611 | MS.gene08068:CDS | 35.0% | |
| ! | ACCTTTTTCTAAGTGACCAA+AGG | + | chr3.3:49240535-49240554 | MS.gene08068:intron | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+TGG | + | chr3.3:49240887-49240906 | MS.gene08068:CDS | 35.0% |
| ! | CCTTTTTCTAAGTGACCAAA+GGG | + | chr3.3:49240536-49240555 | MS.gene08068:intron | 35.0% |
| ! | CTTTTTCTAAGTGACCAAAG+GGG | + | chr3.3:49240537-49240556 | MS.gene08068:intron | 35.0% |
| ! | GTGTTGATAAAGACTACTGA+TGG | + | chr3.3:49240628-49240647 | MS.gene08068:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3.3:49240689-49240708 | MS.gene08068:CDS | 35.0% |
| !! | CAGTGTGTACCACTTTTAAA+TGG | + | chr3.3:49241352-49241371 | MS.gene08068:intron | 35.0% |
| !! | GGAGAGATTTGGTTTGAAAA+GGG | + | chr3.3:49240685-49240704 | MS.gene08068:CDS | 35.0% |
| !! | GTGTGTACCACTTTTAAATG+GGG | + | chr3.3:49241354-49241373 | MS.gene08068:intron | 35.0% |
| !! | TGGAGAGATTTGGTTTGAAA+AGG | + | chr3.3:49240684-49240703 | MS.gene08068:CDS | 35.0% |
| !!! | CTCTTGTTTTTAAGTGGAAG+TGG | + | chr3.3:49241490-49241509 | MS.gene08068:CDS | 35.0% |
| AAGAATGTGGTACTGCAGAT+TGG | + | chr3.3:49241394-49241413 | MS.gene08068:CDS | 40.0% | |
| AGAATGTGGTACTGCAGATT+GGG | + | chr3.3:49241395-49241414 | MS.gene08068:CDS | 40.0% | |
| AGACTACTGATGGCACTAAA+TGG | + | chr3.3:49240638-49240657 | MS.gene08068:CDS | 40.0% | |
| CCCTTTGGTCACTTAGAAAA+AGG | - | chr3.3:49240539-49240558 | None:intergenic | 40.0% | |
| TCATCTGGTAGAAAATCGGA+TGG | + | chr3.3:49241244-49241263 | MS.gene08068:CDS | 40.0% | |
| TCTCATAAAGCCTACTCATC+TGG | + | chr3.3:49241229-49241248 | MS.gene08068:CDS | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | + | chr3.3:49240903-49240922 | MS.gene08068:CDS | 40.0% | |
| TGATCTTGAAGAAACGGATG+GGG | - | chr3.3:49240256-49240275 | None:intergenic | 40.0% | |
| TGGTAGAAAATCGGATGGTA+AGG | + | chr3.3:49241249-49241268 | MS.gene08068:intron | 40.0% | |
| ! | AGAAAGTTCGAGGTTTGGTT+TGG | + | chr3.3:49240965-49240984 | MS.gene08068:intron | 40.0% |
| ! | CGATTTTCTACCAGATGAGT+AGG | - | chr3.3:49241242-49241261 | None:intergenic | 40.0% |
| !!! | GGTTGGCTCTTGTTTTTAAG+TGG | + | chr3.3:49241484-49241503 | MS.gene08068:CDS | 40.0% |
| CATGTTGCAAGTATGATGCG+TGG | - | chr3.3:49240358-49240377 | None:intergenic | 45.0% | |
| CGAACTTTCTTATGTCGTCG+AGG | - | chr3.3:49240955-49240974 | None:intergenic | 45.0% | |
| CGACGACATAAGAAAGTTCG+AGG | + | chr3.3:49240955-49240974 | MS.gene08068:CDS | 45.0% | |
| GATTGGGAAAAGGTCATGGA+AGG | + | chr3.3:49241411-49241430 | MS.gene08068:CDS | 45.0% | |
| TAAAAACAAGAGCCAACCCG+CGG | - | chr3.3:49241482-49241501 | None:intergenic | 45.0% | |
| TGCAGATTGGGAAAAGGTCA+TGG | + | chr3.3:49241407-49241426 | MS.gene08068:CDS | 45.0% | |
| TGGTACTGCAGATTGGGAAA+AGG | + | chr3.3:49241401-49241420 | MS.gene08068:CDS | 45.0% | |
| TGTCGTCGAGGAGAAACAAA+AGG | - | chr3.3:49240943-49240962 | None:intergenic | 45.0% | |
| !! | AGTGGAAGTGGACTGAAATC+AGG | + | chr3.3:49241502-49241521 | MS.gene08068:CDS | 45.0% |
| ATCGGAAGAAGGCTAGGCAA+AGG | + | chr3.3:49240914-49240933 | MS.gene08068:CDS | 50.0% | |
| GGCTTAATCGGAAGAAGGCT+AGG | + | chr3.3:49240908-49240927 | MS.gene08068:CDS | 50.0% | |
| TCTTGAAGAAACGGATGGGG+AGG | - | chr3.3:49240253-49240272 | None:intergenic | 50.0% | |
| !!! | ATATGACCGTCGCTTTTCCG+CGG | + | chr3.3:49241462-49241481 | MS.gene08068:CDS | 50.0% |
| CTCTCTTGGACATGGCTGCT+TGG | + | chr3.3:49240732-49240751 | MS.gene08068:CDS | 55.0% | |
| TCTTGGACATGGCTGCTTGG+TGG | + | chr3.3:49240735-49240754 | MS.gene08068:CDS | 55.0% | |
| ! | TCCTGAGCTCTAGCATCCTG+TGG | - | chr3.3:49241167-49241186 | None:intergenic | 55.0% |
| !!! | TATGACCGTCGCTTTTCCGC+GGG | + | chr3.3:49241463-49241482 | MS.gene08068:CDS | 55.0% |
| GCCACAGGATGCTAGAGCTC+AGG | + | chr3.3:49241163-49241182 | MS.gene08068:CDS | 60.0% | |
| GCCAACCCGCGGAAAAGCGA+CGG | - | chr3.3:49241471-49241490 | None:intergenic | 65.0% | |
| !!! | ACCGTCGCTTTTCCGCGGGT+TGG | + | chr3.3:49241467-49241486 | MS.gene08068:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 49240230 | 49241588 | 49240230 | ID=MS.gene08068 |
| chr3.3 | mRNA | 49240230 | 49241588 | 49240230 | ID=MS.gene08068.t1;Parent=MS.gene08068 |
| chr3.3 | exon | 49240230 | 49240301 | 49240230 | ID=MS.gene08068.t1.exon1;Parent=MS.gene08068.t1 |
| chr3.3 | CDS | 49240230 | 49240301 | 49240230 | ID=cds.MS.gene08068.t1;Parent=MS.gene08068.t1 |
| chr3.3 | exon | 49240577 | 49240976 | 49240577 | ID=MS.gene08068.t1.exon2;Parent=MS.gene08068.t1 |
| chr3.3 | CDS | 49240577 | 49240976 | 49240577 | ID=cds.MS.gene08068.t1;Parent=MS.gene08068.t1 |
| chr3.3 | exon | 49241120 | 49241265 | 49241120 | ID=MS.gene08068.t1.exon3;Parent=MS.gene08068.t1 |
| chr3.3 | CDS | 49241120 | 49241265 | 49241120 | ID=cds.MS.gene08068.t1;Parent=MS.gene08068.t1 |
| chr3.3 | exon | 49241355 | 49241588 | 49241355 | ID=MS.gene08068.t1.exon4;Parent=MS.gene08068.t1 |
| chr3.3 | CDS | 49241355 | 49241588 | 49241355 | ID=cds.MS.gene08068.t1;Parent=MS.gene08068.t1 |
| Gene Sequence |
| Protein sequence |
