Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08069.t1 | XP_003600455.1 | 85.9 | 284 | 36 | 2 | 1 | 283 | 1 | 281 | 9.90E-135 | 489.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08069.t1 | Q8L3W1 | 24.3 | 334 | 187 | 8 | 12 | 283 | 6 | 335 | 3.1e-20 | 100.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08069.t1 | G8A2Z2 | 85.9 | 284 | 36 | 2 | 1 | 283 | 1 | 281 | 7.2e-135 | 489.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08069.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08069.t1 | MTR_3g061370 | 85.915 | 284 | 36 | 2 | 1 | 283 | 1 | 281 | 4.93e-179 | 494 |
| MS.gene08069.t1 | MTR_3g061350 | 79.577 | 284 | 57 | 1 | 1 | 283 | 1 | 284 | 1.07e-166 | 463 |
| MS.gene08069.t1 | MTR_3g061320 | 73.239 | 284 | 70 | 2 | 1 | 283 | 1 | 279 | 1.86e-149 | 419 |
| MS.gene08069.t1 | MTR_3g061340 | 71.127 | 284 | 71 | 3 | 1 | 283 | 1 | 274 | 5.97e-143 | 403 |
| MS.gene08069.t1 | MTR_3g061330 | 80.556 | 252 | 46 | 3 | 1 | 250 | 1 | 251 | 2.66e-142 | 400 |
| MS.gene08069.t1 | MTR_3g061310 | 69.474 | 285 | 85 | 1 | 1 | 283 | 1 | 285 | 2.18e-141 | 399 |
| MS.gene08069.t1 | MTR_3g061290 | 70.760 | 171 | 50 | 0 | 1 | 171 | 1 | 171 | 3.69e-85 | 253 |
| MS.gene08069.t1 | MTR_3g061220 | 67.939 | 131 | 28 | 2 | 1 | 131 | 1 | 117 | 3.20e-56 | 177 |
| MS.gene08069.t1 | MTR_3g061300 | 73.109 | 119 | 32 | 0 | 162 | 280 | 2 | 120 | 8.26e-56 | 176 |
| MS.gene08069.t1 | MTR_1g035460 | 35.154 | 293 | 147 | 9 | 26 | 283 | 2 | 286 | 6.83e-48 | 164 |
| MS.gene08069.t1 | MTR_8g103940 | 34.951 | 309 | 151 | 10 | 10 | 283 | 37 | 330 | 1.02e-47 | 166 |
| MS.gene08069.t1 | MTR_1g108780 | 35.154 | 293 | 141 | 7 | 25 | 283 | 12 | 289 | 2.47e-45 | 159 |
| MS.gene08069.t1 | MTR_7g050710 | 33.333 | 306 | 168 | 9 | 7 | 283 | 8 | 306 | 6.94e-43 | 149 |
| MS.gene08069.t1 | MTR_7g050560 | 34.859 | 284 | 172 | 6 | 9 | 283 | 10 | 289 | 1.59e-42 | 148 |
| MS.gene08069.t1 | MTR_3g098790 | 34.364 | 291 | 173 | 9 | 9 | 283 | 10 | 298 | 6.12e-41 | 144 |
| MS.gene08069.t1 | MTR_5g044670 | 30.420 | 286 | 184 | 5 | 12 | 282 | 16 | 301 | 1.72e-38 | 138 |
| MS.gene08069.t1 | MTR_7g050580 | 32.986 | 288 | 176 | 9 | 7 | 283 | 8 | 289 | 6.92e-38 | 136 |
| MS.gene08069.t1 | MTR_7g050720 | 32.268 | 313 | 179 | 9 | 4 | 283 | 2 | 314 | 4.99e-37 | 134 |
| MS.gene08069.t1 | MTR_7g050590 | 31.379 | 290 | 155 | 9 | 26 | 283 | 2 | 279 | 1.34e-33 | 124 |
| MS.gene08069.t1 | MTR_1g035640 | 30.249 | 281 | 175 | 7 | 12 | 282 | 9 | 278 | 1.96e-30 | 119 |
| MS.gene08069.t1 | MTR_4g119990 | 28.713 | 303 | 183 | 11 | 10 | 283 | 13 | 311 | 2.05e-29 | 115 |
| MS.gene08069.t1 | MTR_3g005490 | 28.881 | 277 | 153 | 7 | 12 | 283 | 21 | 258 | 2.97e-27 | 107 |
| MS.gene08069.t1 | MTR_5g070440 | 28.261 | 276 | 165 | 6 | 12 | 283 | 21 | 267 | 1.99e-26 | 105 |
| MS.gene08069.t1 | MTR_6g061070 | 28.000 | 325 | 178 | 9 | 2 | 282 | 8 | 320 | 2.76e-26 | 107 |
| MS.gene08069.t1 | MTR_1g035570 | 26.280 | 293 | 178 | 9 | 12 | 282 | 9 | 285 | 1.01e-25 | 105 |
| MS.gene08069.t1 | MTR_3g005480 | 29.749 | 279 | 149 | 8 | 12 | 283 | 21 | 259 | 1.17e-25 | 102 |
| MS.gene08069.t1 | MTR_3g005420 | 27.899 | 276 | 166 | 5 | 12 | 283 | 289 | 535 | 1.90e-24 | 102 |
| MS.gene08069.t1 | MTR_3g005420 | 25.899 | 278 | 136 | 10 | 12 | 277 | 40 | 259 | 4.14e-14 | 72.4 |
| MS.gene08069.t1 | MTR_6g043890 | 27.055 | 292 | 169 | 9 | 10 | 270 | 13 | 291 | 3.63e-24 | 100 |
| MS.gene08069.t1 | MTR_1g035620 | 25.952 | 289 | 182 | 8 | 9 | 282 | 6 | 277 | 5.83e-22 | 95.1 |
| MS.gene08069.t1 | MTR_3g005495 | 29.259 | 270 | 142 | 7 | 12 | 277 | 243 | 467 | 2.37e-21 | 93.6 |
| MS.gene08069.t1 | MTR_3g005495 | 33.333 | 108 | 72 | 0 | 21 | 128 | 24 | 131 | 4.58e-15 | 75.1 |
| MS.gene08069.t1 | MTR_1g034240 | 35.507 | 138 | 77 | 3 | 8 | 133 | 1 | 138 | 9.26e-21 | 91.7 |
| MS.gene08069.t1 | MTR_4g068320 | 28.497 | 193 | 113 | 5 | 12 | 194 | 6 | 183 | 2.81e-20 | 90.1 |
| MS.gene08069.t1 | MTR_7g050640 | 42.708 | 96 | 53 | 1 | 10 | 103 | 11 | 106 | 4.24e-20 | 84.0 |
| MS.gene08069.t1 | MTR_1g050845 | 24.113 | 282 | 184 | 7 | 9 | 282 | 6 | 265 | 4.26e-20 | 90.5 |
| MS.gene08069.t1 | MTR_3g005460 | 26.573 | 286 | 169 | 8 | 10 | 283 | 260 | 516 | 1.09e-18 | 85.9 |
| MS.gene08069.t1 | MTR_3g005460 | 25.362 | 276 | 138 | 7 | 12 | 277 | 25 | 242 | 1.41e-17 | 82.8 |
| MS.gene08069.t1 | MTR_1g035650 | 37.500 | 104 | 61 | 2 | 9 | 110 | 6 | 107 | 1.11e-18 | 82.4 |
| MS.gene08069.t1 | MTR_1g035510 | 38.938 | 113 | 62 | 3 | 26 | 134 | 2 | 111 | 7.52e-18 | 80.5 |
| MS.gene08069.t1 | MTR_1g033740 | 28.293 | 205 | 117 | 8 | 2 | 199 | 12 | 193 | 9.34e-17 | 77.0 |
| MS.gene08069.t1 | MTR_1g021360 | 25.517 | 290 | 192 | 9 | 10 | 280 | 182 | 466 | 1.61e-16 | 79.7 |
| MS.gene08069.t1 | MTR_1g034210 | 37.168 | 113 | 66 | 3 | 7 | 117 | 3 | 112 | 2.06e-16 | 78.2 |
| MS.gene08069.t1 | MTR_1g034210 | 37.168 | 113 | 66 | 3 | 7 | 117 | 3 | 112 | 2.90e-16 | 78.2 |
| MS.gene08069.t1 | MTR_1g035440 | 39.423 | 104 | 60 | 2 | 8 | 108 | 11 | 114 | 3.28e-16 | 76.6 |
| MS.gene08069.t1 | MTR_1g035520 | 28.076 | 317 | 168 | 12 | 12 | 282 | 80 | 382 | 3.57e-16 | 78.2 |
| MS.gene08069.t1 | MTR_1g035470 | 40.000 | 115 | 59 | 4 | 26 | 134 | 2 | 112 | 4.13e-16 | 73.9 |
| MS.gene08069.t1 | MTR_3g005440 | 31.884 | 138 | 92 | 1 | 13 | 148 | 23 | 160 | 9.28e-16 | 77.0 |
| MS.gene08069.t1 | MTR_3g005440 | 33.945 | 109 | 70 | 1 | 16 | 122 | 246 | 354 | 2.44e-13 | 70.1 |
| MS.gene08069.t1 | MTR_1g035500 | 32.624 | 141 | 84 | 5 | 2 | 134 | 15 | 152 | 9.05e-15 | 71.2 |
| MS.gene08069.t1 | MTR_1g035480 | 31.206 | 141 | 86 | 5 | 2 | 134 | 7 | 144 | 1.07e-14 | 71.2 |
| MS.gene08069.t1 | MTR_3g005420 | 25.899 | 278 | 136 | 10 | 12 | 277 | 21 | 240 | 4.42e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08069.t1 | AT3G18990 | 26.608 | 342 | 178 | 12 | 8 | 283 | 1 | 335 | 3.37e-30 | 116 |
| MS.gene08069.t1 | AT3G18990 | 26.608 | 342 | 178 | 12 | 8 | 283 | 1 | 335 | 8.17e-30 | 115 |
| MS.gene08069.t1 | AT1G49475 | 39.496 | 119 | 68 | 3 | 11 | 127 | 33 | 149 | 2.42e-18 | 81.3 |
| MS.gene08069.t1 | AT4G01580 | 33.333 | 138 | 84 | 2 | 11 | 146 | 29 | 160 | 1.36e-17 | 79.3 |
| MS.gene08069.t1 | AT3G18960 | 40.000 | 100 | 58 | 1 | 11 | 108 | 29 | 128 | 3.40e-17 | 78.2 |
| MS.gene08069.t1 | AT3G18960 | 40.000 | 100 | 58 | 1 | 11 | 108 | 29 | 128 | 3.72e-17 | 78.6 |
| MS.gene08069.t1 | AT4G33280 | 24.333 | 300 | 197 | 9 | 10 | 283 | 23 | 318 | 8.24e-16 | 76.6 |
| MS.gene08069.t1 | AT3G18960 | 42.857 | 84 | 48 | 0 | 25 | 108 | 8 | 91 | 8.28e-15 | 71.2 |
Find 52 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTAAATGGAAAATTTAT+TGG | 0.195816 | 3.3:+49250925 | MS.gene08069:CDS |
| TGATGAATCAGTTGAGATTT+TGG | 0.206026 | 3.3:+49251154 | MS.gene08069:CDS |
| TGTCTCTTTGTAAACTTTCT+TGG | 0.219902 | 3.3:-49250858 | None:intergenic |
| GTATGTTCTACCAGATTAAT+TGG | 0.237843 | 3.3:-49251481 | None:intergenic |
| CAGTCTGTACCAGATTTAAA+AGG | 0.258589 | 3.3:+49251596 | MS.gene08069:intron |
| AAAGAACTTCATCAATAAAT+TGG | 0.265159 | 3.3:+49251383 | MS.gene08069:CDS |
| AGACTCCTGATGACACTAAA+TGG | 0.267004 | 3.3:+49250913 | MS.gene08069:CDS |
| CAATCCTATGAAGATTAGTT+TGG | 0.289306 | 3.3:-49250550 | None:intergenic |
| ACTGATAAACAAGAAAGATT+TGG | 0.358474 | 3.3:+49251787 | MS.gene08069:CDS |
| TCCTGAGCTCTAGCATCCTT+TGG | 0.372162 | 3.3:-49251406 | None:intergenic |
| CGGACTTTCTTATGTGTTTG+AGG | 0.377509 | 3.3:-49251227 | None:intergenic |
| TTTACTGAAAATTACTCTCT+TGG | 0.379721 | 3.3:+49250993 | MS.gene08069:CDS |
| GAAATTACTTCGTTCTTATG+AGG | 0.400935 | 3.3:+49251679 | MS.gene08069:CDS |
| CTCTCTTGGACATGGCTGCT+TGG | 0.402665 | 3.3:+49251007 | MS.gene08069:CDS |
| TCTCATCAAGCCAATTAATC+TGG | 0.435253 | 3.3:+49251471 | MS.gene08069:CDS |
| AGATTTGGTTTGAAAGGGGT+TGG | 0.435761 | 3.3:+49250964 | MS.gene08069:CDS |
| TGGTGAGATTTGGTTTGAAA+GGG | 0.445670 | 3.3:+49250959 | MS.gene08069:CDS |
| AGTGAAAGTGGACTGAAATC+AGG | 0.450670 | 3.3:+49251746 | MS.gene08069:CDS |
| CGTTCTTATGAGGACAGAAA+TGG | 0.452925 | 3.3:+49251689 | MS.gene08069:CDS |
| TCCTCCAAACTAATCTTCAT+AGG | 0.457688 | 3.3:+49250546 | MS.gene08069:CDS |
| ATGGTGAGATTTGGTTTGAA+AGG | 0.464155 | 3.3:+49250958 | MS.gene08069:CDS |
| TCAGGAGTCTTTATCACCAC+TGG | 0.464260 | 3.3:-49250900 | None:intergenic |
| AGAATGTGATGCTGCTGATT+GGG | 0.480788 | 3.3:+49251639 | MS.gene08069:CDS |
| AAGAATGTGATGCTGCTGAT+TGG | 0.482287 | 3.3:+49251638 | MS.gene08069:CDS |
| CTTATGTGTTTGAGGAGAAA+CGG | 0.483996 | 3.3:-49251219 | None:intergenic |
| TCCTATGAAGATTAGTTTGG+AGG | 0.495980 | 3.3:-49250547 | None:intergenic |
| AAAAGGGATTATTGAGAACA+AGG | 0.512795 | 3.3:+49251613 | MS.gene08069:CDS |
| GCCAAAGGATGCTAGAGCTC+AGG | 0.513948 | 3.3:+49251405 | MS.gene08069:CDS |
| TCTTGGACATGGCTGCTTGG+TGG | 0.517847 | 3.3:+49251010 | MS.gene08069:CDS |
| TTGGTGGTGTTTGAATATAA+AGG | 0.518126 | 3.3:+49251026 | MS.gene08069:CDS |
| AATGGTCGTCGCCTTTCCGC+AGG | 0.521285 | 3.3:+49251707 | MS.gene08069:CDS |
| CATATTTGACATGAATGCTA+TGG | 0.522338 | 3.3:+49251070 | MS.gene08069:CDS |
| AGTCTGTACCAGATTTAAAA+GGG | 0.526687 | 3.3:+49251597 | MS.gene08069:intron |
| TCACTGTTTGCAAGTGAAAG+TGG | 0.557742 | 3.3:+49251734 | MS.gene08069:CDS |
| TAATCTGGTAGAACATACTC+TGG | 0.560062 | 3.3:+49251486 | MS.gene08069:CDS |
| GTCGTCGCCTTTCCGCAGGT+TGG | 0.568723 | 3.3:+49251711 | MS.gene08069:CDS |
| GATAGAATTTCCTCTAGCCA+TGG | 0.581834 | 3.3:-49250498 | None:intergenic |
| TGATGCTGCTGATTGGGAAA+AGG | 0.583869 | 3.3:+49251645 | MS.gene08069:CDS |
| TGAATGGCTTAATCGGAAGA+AGG | 0.588393 | 3.3:+49251178 | MS.gene08069:CDS |
| TTCATCAATAAATTGGCCAA+AGG | 0.589930 | 3.3:+49251390 | MS.gene08069:CDS |
| TGCTGATTGGGAAAAGGTCG+TGG | 0.603516 | 3.3:+49251651 | MS.gene08069:CDS |
| AAATATGTGTACATCAAACT+CGG | 0.606655 | 3.3:-49251054 | None:intergenic |
| TTTACAAAGAGACATGGAGT+TGG | 0.622876 | 3.3:+49250867 | MS.gene08069:CDS |
| ACTCTTTCATCCATGGCTAG+AGG | 0.624006 | 3.3:+49250488 | None:intergenic |
| TGTGTTTGAGGAGAAACGGA+AGG | 0.627724 | 3.3:-49251215 | None:intergenic |
| ACAGTGACCAACCTGCGGAA+AGG | 0.630949 | 3.3:-49251718 | None:intergenic |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3.3:+49250999 | MS.gene08069:CDS |
| GGTGAGATTTGGTTTGAAAG+GGG | 0.635152 | 3.3:+49250960 | MS.gene08069:CDS |
| AGAAAGTTTACAAAGAGACA+TGG | 0.659306 | 3.3:+49250861 | MS.gene08069:CDS |
| TGCAAACAGTGACCAACCTG+CGG | 0.663761 | 3.3:-49251723 | None:intergenic |
| CAAACACATAAGAAAGTCCG+AGG | 0.666813 | 3.3:+49251230 | MS.gene08069:CDS |
| AGTTGGTCTATCAAATCCAG+TGG | 0.699067 | 3.3:+49250884 | MS.gene08069:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTGGAAAAAAATCAA+TGG | + | chr3.3:49250939-49250958 | MS.gene08069:CDS | 15.0% |
| !! | CTAAAGTAAATAATACTAAT+AGG | - | chr3.3:49250588-49250607 | None:intergenic | 15.0% |
| !! | AAAGAACTTCATCAATAAAT+TGG | + | chr3.3:49251383-49251402 | MS.gene08069:CDS | 20.0% |
| !! | ACACTAAATGGAAAATTTAT+TGG | + | chr3.3:49250925-49250944 | MS.gene08069:CDS | 20.0% |
| !! | TAAAAATTAAAGAACTCCTT+TGG | - | chr3.3:49250829-49250848 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCAGTATACATAA+TGG | + | chr3.3:49251272-49251291 | MS.gene08069:intron | 20.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3.3:49250949-49250968 | MS.gene08069:CDS | 25.0% |
| ! | AAATATGTGTACATCAAACT+CGG | - | chr3.3:49251057-49251076 | None:intergenic | 25.0% |
| ! | ACTGATAAACAAGAAAGATT+TGG | + | chr3.3:49251787-49251806 | MS.gene08069:CDS | 25.0% |
| ! | GCTGTGATTATAAATTATGA+TGG | + | chr3.3:49251551-49251570 | MS.gene08069:intron | 25.0% |
| ! | TTGATGAGAATTGTGAAAAA+AGG | - | chr3.3:49251460-49251479 | None:intergenic | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3.3:49250993-49251012 | MS.gene08069:CDS | 25.0% |
| !! | TAGCGCTAGAAATTTTATTA+TGG | + | chr3.3:49250716-49250735 | MS.gene08069:intron | 25.0% |
| !! | TCAATAATCCCTTTTAAATC+TGG | - | chr3.3:49251608-49251627 | None:intergenic | 25.0% |
| AAAAGGGATTATTGAGAACA+AGG | + | chr3.3:49251613-49251632 | MS.gene08069:CDS | 30.0% | |
| AGAAAGTTTACAAAGAGACA+TGG | + | chr3.3:49250861-49250880 | MS.gene08069:CDS | 30.0% | |
| AGTCTGTACCAGATTTAAAA+GGG | + | chr3.3:49251597-49251616 | MS.gene08069:intron | 30.0% | |
| CATATTTGACATGAATGCTA+TGG | + | chr3.3:49251070-49251089 | MS.gene08069:CDS | 30.0% | |
| GAAATTACTTCGTTCTTATG+AGG | + | chr3.3:49251679-49251698 | MS.gene08069:CDS | 30.0% | |
| GTATGTTCTACCAGATTAAT+TGG | - | chr3.3:49251484-49251503 | None:intergenic | 30.0% | |
| TACATTACACACATATATGC+AGG | + | chr3.3:49251340-49251359 | MS.gene08069:intron | 30.0% | |
| TGTCTCTTTGTAAACTTTCT+TGG | - | chr3.3:49250861-49250880 | None:intergenic | 30.0% | |
| TGTGTGTAATGTAAAACTCT+TGG | - | chr3.3:49251333-49251352 | None:intergenic | 30.0% | |
| TTCATCAATAAATTGGCCAA+AGG | + | chr3.3:49251390-49251409 | MS.gene08069:CDS | 30.0% | |
| ! | ATTTTCCATTTAGTGTCATC+AGG | - | chr3.3:49250921-49250940 | None:intergenic | 30.0% |
| ! | CAATCCTATGAAGATTAGTT+TGG | - | chr3.3:49250553-49250572 | None:intergenic | 30.0% |
| ! | TGATGAATCAGTTGAGATTT+TGG | + | chr3.3:49251154-49251173 | MS.gene08069:CDS | 30.0% |
| ! | TTTTGGATGAATGGCTTAAT+CGG | + | chr3.3:49251171-49251190 | MS.gene08069:CDS | 30.0% |
| !! | ATGATTTTGAAGAAACGGAT+GGG | - | chr3.3:49250527-49250546 | None:intergenic | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3.3:49251026-49251045 | MS.gene08069:CDS | 30.0% |
| CAGTCTGTACCAGATTTAAA+AGG | + | chr3.3:49251596-49251615 | MS.gene08069:intron | 35.0% | |
| CTTATGTGTTTGAGGAGAAA+CGG | - | chr3.3:49251222-49251241 | None:intergenic | 35.0% | |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3.3:49250999-49251018 | MS.gene08069:CDS | 35.0% | |
| TAATCTGGTAGAACATACTC+TGG | + | chr3.3:49251486-49251505 | MS.gene08069:CDS | 35.0% | |
| TCCTCCAAACTAATCTTCAT+AGG | + | chr3.3:49250546-49250565 | MS.gene08069:CDS | 35.0% | |
| TCCTTTGGTCACTAAGAAAA+AGG | - | chr3.3:49250814-49250833 | None:intergenic | 35.0% | |
| TCTCATCAAGCCAATTAATC+TGG | + | chr3.3:49251471-49251490 | MS.gene08069:CDS | 35.0% | |
| TTTACAAAGAGACATGGAGT+TGG | + | chr3.3:49250867-49250886 | MS.gene08069:CDS | 35.0% | |
| ! | AACTCTTGGAGAGCATATTT+AGG | - | chr3.3:49251319-49251338 | None:intergenic | 35.0% |
| ! | ACCTTTTTCTTAGTGACCAA+AGG | + | chr3.3:49250810-49250829 | MS.gene08069:intron | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+TGG | + | chr3.3:49251162-49251181 | MS.gene08069:CDS | 35.0% |
| !! | ATGGTGAGATTTGGTTTGAA+AGG | + | chr3.3:49250958-49250977 | MS.gene08069:CDS | 35.0% |
| !! | GATGATTTTGAAGAAACGGA+TGG | - | chr3.3:49250528-49250547 | None:intergenic | 35.0% |
| !! | GGAGAGCATATTTAGGATTT+TGG | - | chr3.3:49251312-49251331 | None:intergenic | 35.0% |
| !! | GGAGGATGATTTTGAAGAAA+CGG | - | chr3.3:49250532-49250551 | None:intergenic | 35.0% |
| !! | TCCTATGAAGATTAGTTTGG+AGG | - | chr3.3:49250550-49250569 | None:intergenic | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+GGG | + | chr3.3:49250959-49250978 | MS.gene08069:CDS | 35.0% |
| AAGAATGTGATGCTGCTGAT+TGG | + | chr3.3:49251638-49251657 | MS.gene08069:CDS | 40.0% | |
| ACATAAGAAAGTCCGAGGTT+TGG | + | chr3.3:49251235-49251254 | MS.gene08069:intron | 40.0% | |
| AGACTCCTGATGACACTAAA+TGG | + | chr3.3:49250913-49250932 | MS.gene08069:CDS | 40.0% | |
| CAAACACATAAGAAAGTCCG+AGG | + | chr3.3:49251230-49251249 | MS.gene08069:CDS | 40.0% | |
| CAAGAAACCAAACCAAACCT+CGG | - | chr3.3:49251250-49251269 | None:intergenic | 40.0% | |
| CGGACTTTCTTATGTGTTTG+AGG | - | chr3.3:49251230-49251249 | None:intergenic | 40.0% | |
| CGTTCTTATGAGGACAGAAA+TGG | + | chr3.3:49251689-49251708 | MS.gene08069:CDS | 40.0% | |
| TCACTGTTTGCAAGTGAAAG+TGG | + | chr3.3:49251734-49251753 | MS.gene08069:CDS | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | + | chr3.3:49251178-49251197 | MS.gene08069:CDS | 40.0% | |
| ! | AGAATGTGATGCTGCTGATT+GGG | + | chr3.3:49251639-49251658 | MS.gene08069:CDS | 40.0% |
| ! | AGTTGGTCTATCAAATCCAG+TGG | + | chr3.3:49250884-49250903 | MS.gene08069:CDS | 40.0% |
| !! | AGATTTGGTTTGAAAGGGGT+TGG | + | chr3.3:49250964-49250983 | MS.gene08069:CDS | 40.0% |
| !! | AGTGAAAGTGGACTGAAATC+AGG | + | chr3.3:49251746-49251765 | MS.gene08069:CDS | 40.0% |
| !! | GGTGAGATTTGGTTTGAAAG+GGG | + | chr3.3:49250960-49250979 | MS.gene08069:CDS | 40.0% |
| !! | TTTTGAAGAAACGGATGGGA+AGG | - | chr3.3:49250523-49250542 | None:intergenic | 40.0% |
| CTGGTAGAACATACTCTGGT+AGG | + | chr3.3:49251490-49251509 | MS.gene08069:intron | 45.0% | |
| TCAGGAGTCTTTATCACCAC+TGG | - | chr3.3:49250903-49250922 | None:intergenic | 45.0% | |
| TGTGTTTGAGGAGAAACGGA+AGG | - | chr3.3:49251218-49251237 | None:intergenic | 45.0% | |
| ! | AGAAAGTCCGAGGTTTGGTT+TGG | + | chr3.3:49251240-49251259 | MS.gene08069:intron | 45.0% |
| ! | TGATGCTGCTGATTGGGAAA+AGG | + | chr3.3:49251645-49251664 | MS.gene08069:CDS | 45.0% |
| TGCAAACAGTGACCAACCTG+CGG | - | chr3.3:49251726-49251745 | None:intergenic | 50.0% | |
| ! | TCCTGAGCTCTAGCATCCTT+TGG | - | chr3.3:49251409-49251428 | None:intergenic | 50.0% |
| ! | TGCTGATTGGGAAAAGGTCG+TGG | + | chr3.3:49251651-49251670 | MS.gene08069:CDS | 50.0% |
| ACAGTGACCAACCTGCGGAA+AGG | - | chr3.3:49251721-49251740 | None:intergenic | 55.0% | |
| CTCTCTTGGACATGGCTGCT+TGG | + | chr3.3:49251007-49251026 | MS.gene08069:CDS | 55.0% | |
| GCCAAAGGATGCTAGAGCTC+AGG | + | chr3.3:49251405-49251424 | MS.gene08069:CDS | 55.0% | |
| TCTTGGACATGGCTGCTTGG+TGG | + | chr3.3:49251010-49251029 | MS.gene08069:CDS | 55.0% | |
| AATGGTCGTCGCCTTTCCGC+AGG | + | chr3.3:49251707-49251726 | MS.gene08069:CDS | 60.0% | |
| GTCGTCGCCTTTCCGCAGGT+TGG | + | chr3.3:49251711-49251730 | MS.gene08069:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 49250500 | 49251832 | 49250500 | ID=MS.gene08069 |
| chr3.3 | mRNA | 49250500 | 49251832 | 49250500 | ID=MS.gene08069.t1;Parent=MS.gene08069 |
| chr3.3 | exon | 49250500 | 49250571 | 49250500 | ID=MS.gene08069.t1.exon1;Parent=MS.gene08069.t1 |
| chr3.3 | CDS | 49250500 | 49250571 | 49250500 | ID=cds.MS.gene08069.t1;Parent=MS.gene08069.t1 |
| chr3.3 | exon | 49250852 | 49251251 | 49250852 | ID=MS.gene08069.t1.exon2;Parent=MS.gene08069.t1 |
| chr3.3 | CDS | 49250852 | 49251251 | 49250852 | ID=cds.MS.gene08069.t1;Parent=MS.gene08069.t1 |
| chr3.3 | exon | 49251362 | 49251507 | 49251362 | ID=MS.gene08069.t1.exon3;Parent=MS.gene08069.t1 |
| chr3.3 | CDS | 49251362 | 49251507 | 49251362 | ID=cds.MS.gene08069.t1;Parent=MS.gene08069.t1 |
| chr3.3 | exon | 49251599 | 49251832 | 49251599 | ID=MS.gene08069.t1.exon4;Parent=MS.gene08069.t1 |
| chr3.3 | CDS | 49251599 | 49251832 | 49251599 | ID=cds.MS.gene08069.t1;Parent=MS.gene08069.t1 |
| Gene Sequence |
| Protein sequence |
