Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08224.t1 | XP_003624611.1 | 95.5 | 269 | 4 | 2 | 1 | 269 | 1 | 261 | 1.40E-138 | 502.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08224.t1 | O82632 | 42.8 | 222 | 81 | 6 | 45 | 260 | 80 | 261 | 9.9e-32 | 138.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08224.t1 | A2Q5Q2 | 95.5 | 269 | 4 | 2 | 1 | 269 | 1 | 261 | 1.0e-138 | 502.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene08224.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08224.t1 | MTR_7g085410 | 95.539 | 269 | 4 | 2 | 1 | 269 | 1 | 261 | 0.0 | 513 |
MS.gene08224.t1 | MTR_6g032830 | 61.733 | 277 | 76 | 10 | 1 | 264 | 1 | 260 | 2.82e-104 | 304 |
MS.gene08224.t1 | MTR_3g109760 | 39.200 | 250 | 95 | 9 | 15 | 260 | 75 | 271 | 1.60e-35 | 129 |
MS.gene08224.t1 | MTR_1g094930 | 76.471 | 68 | 16 | 0 | 193 | 260 | 144 | 211 | 2.13e-34 | 124 |
MS.gene08224.t1 | MTR_1g094930 | 76.471 | 68 | 16 | 0 | 193 | 260 | 239 | 306 | 6.81e-34 | 125 |
MS.gene08224.t1 | MTR_4g071590 | 80.000 | 65 | 13 | 0 | 196 | 260 | 211 | 275 | 3.99e-33 | 122 |
MS.gene08224.t1 | MTR_4g471590 | 80.000 | 65 | 13 | 0 | 196 | 260 | 211 | 275 | 3.99e-33 | 122 |
MS.gene08224.t1 | MTR_2g094600 | 61.702 | 94 | 35 | 1 | 172 | 264 | 191 | 284 | 4.07e-33 | 123 |
MS.gene08224.t1 | MTR_1g006650 | 35.985 | 264 | 114 | 9 | 11 | 260 | 76 | 298 | 1.07e-32 | 122 |
MS.gene08224.t1 | MTR_8g076340 | 81.538 | 65 | 12 | 0 | 196 | 260 | 218 | 282 | 2.14e-32 | 120 |
MS.gene08224.t1 | MTR_5g021340 | 41.921 | 229 | 93 | 9 | 45 | 260 | 163 | 364 | 2.71e-32 | 122 |
MS.gene08224.t1 | MTR_8g013950 | 37.118 | 229 | 78 | 7 | 45 | 260 | 115 | 290 | 3.78e-32 | 121 |
MS.gene08224.t1 | MTR_1g046680 | 74.648 | 71 | 18 | 0 | 190 | 260 | 166 | 236 | 7.38e-32 | 118 |
MS.gene08224.t1 | MTR_1g116010 | 75.758 | 66 | 16 | 0 | 196 | 261 | 164 | 229 | 1.26e-31 | 117 |
MS.gene08224.t1 | MTR_3g117380 | 76.923 | 65 | 15 | 0 | 196 | 260 | 229 | 293 | 4.58e-31 | 117 |
MS.gene08224.t1 | MTR_4g058910 | 71.831 | 71 | 20 | 0 | 193 | 263 | 311 | 381 | 2.76e-30 | 117 |
MS.gene08224.t1 | MTR_5g007600 | 73.846 | 65 | 17 | 0 | 196 | 260 | 259 | 323 | 2.19e-29 | 113 |
MS.gene08224.t1 | MTR_5g007600 | 71.875 | 64 | 18 | 0 | 196 | 259 | 157 | 220 | 1.04e-27 | 109 |
MS.gene08224.t1 | MTR_7g446110 | 58.065 | 62 | 26 | 0 | 196 | 257 | 187 | 248 | 7.24e-20 | 86.7 |
MS.gene08224.t1 | MTR_7g445950 | 56.923 | 65 | 28 | 0 | 193 | 257 | 117 | 181 | 1.40e-19 | 84.3 |
MS.gene08224.t1 | MTR_7g446070 | 40.000 | 105 | 63 | 0 | 153 | 257 | 89 | 193 | 3.95e-19 | 83.2 |
MS.gene08224.t1 | MTR_7g445980 | 57.143 | 63 | 26 | 1 | 196 | 257 | 33 | 95 | 1.07e-17 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08224.t1 | AT4G32890 | 42.793 | 222 | 81 | 6 | 45 | 260 | 80 | 261 | 8.09e-44 | 151 |
MS.gene08224.t1 | AT2G45050 | 39.167 | 240 | 93 | 8 | 21 | 260 | 57 | 243 | 1.09e-39 | 139 |
MS.gene08224.t1 | AT5G66320 | 40.816 | 245 | 112 | 8 | 28 | 260 | 90 | 313 | 4.25e-36 | 131 |
MS.gene08224.t1 | AT5G66320 | 40.816 | 245 | 112 | 8 | 28 | 260 | 90 | 313 | 4.25e-36 | 131 |
MS.gene08224.t1 | AT3G60530 | 39.631 | 217 | 59 | 8 | 45 | 260 | 77 | 222 | 9.35e-36 | 128 |
MS.gene08224.t1 | AT5G25830 | 38.235 | 238 | 89 | 8 | 45 | 260 | 82 | 283 | 2.68e-35 | 129 |
MS.gene08224.t1 | AT3G24050 | 75.000 | 68 | 17 | 0 | 193 | 260 | 191 | 258 | 4.56e-33 | 122 |
MS.gene08224.t1 | AT4G36240 | 38.288 | 222 | 74 | 6 | 45 | 265 | 74 | 233 | 4.69e-33 | 121 |
MS.gene08224.t1 | AT3G54810 | 77.612 | 67 | 15 | 0 | 194 | 260 | 227 | 293 | 1.65e-32 | 122 |
MS.gene08224.t1 | AT3G54810 | 77.612 | 67 | 15 | 0 | 194 | 260 | 227 | 293 | 1.65e-32 | 122 |
MS.gene08224.t1 | AT3G51080 | 81.538 | 65 | 12 | 0 | 196 | 260 | 221 | 285 | 5.26e-32 | 120 |
MS.gene08224.t1 | AT1G08010 | 72.308 | 65 | 18 | 0 | 196 | 260 | 220 | 284 | 3.56e-31 | 117 |
MS.gene08224.t1 | AT1G08010 | 72.308 | 65 | 18 | 0 | 196 | 260 | 220 | 284 | 3.56e-31 | 117 |
MS.gene08224.t1 | AT1G08010 | 72.308 | 65 | 18 | 0 | 196 | 260 | 220 | 284 | 3.56e-31 | 117 |
MS.gene08224.t1 | AT1G08000 | 73.846 | 65 | 17 | 0 | 196 | 260 | 218 | 282 | 7.83e-30 | 114 |
MS.gene08224.t1 | AT1G08000 | 73.846 | 65 | 17 | 0 | 196 | 260 | 218 | 282 | 7.83e-30 | 114 |
MS.gene08224.t1 | AT4G34680 | 72.308 | 65 | 18 | 0 | 196 | 260 | 180 | 244 | 9.00e-30 | 113 |
MS.gene08224.t1 | AT4G34680 | 72.308 | 65 | 18 | 0 | 196 | 260 | 180 | 244 | 9.00e-30 | 113 |
MS.gene08224.t1 | AT2G28340 | 67.188 | 64 | 21 | 0 | 198 | 261 | 193 | 256 | 2.72e-26 | 104 |
MS.gene08224.t1 | AT3G45170 | 54.878 | 82 | 37 | 0 | 185 | 266 | 104 | 185 | 2.99e-26 | 102 |
Find 51 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTCTTAAAACAAGCTTAT+TGG | 0.124697 | 7.3:+23140626 | MS.gene08224:CDS |
CACTAGAAACTTGTACATTT+TGG | 0.144962 | 7.3:-23139904 | None:intergenic |
CATGCATTGCATAGTGTCTT+TGG | 0.243410 | 7.3:-23140859 | None:intergenic |
TGAAAAGGAAATTGTGAAAA+AGG | 0.260278 | 7.3:+23140714 | MS.gene08224:CDS |
CATAGTGTCTTTGGGCCTAA+TGG | 0.278012 | 7.3:-23140850 | None:intergenic |
ACACTACTCACTAGGATTAA+TGG | 0.294145 | 7.3:-23141010 | None:intergenic |
ATGGGCCTGCCCTCCATTGT+GGG | 0.318681 | 7.3:-23140831 | None:intergenic |
CAATGGAGGGCAGGCCCATT+AGG | 0.322478 | 7.3:+23140835 | MS.gene08224:CDS |
AAGATGCTTAAAGGGTCTTT+TGG | 0.328925 | 7.3:-23140556 | None:intergenic |
GTATTGGATAAGATGCTTAA+AGG | 0.338824 | 7.3:-23140565 | None:intergenic |
ATAGTGTCTTTGGGCCTAAT+GGG | 0.339035 | 7.3:-23140849 | None:intergenic |
GGTTTCTTCACTGTGTTTGA+AGG | 0.343748 | 7.3:-23140451 | None:intergenic |
GTACACCTCCTTGTTGGAAT+TGG | 0.356244 | 7.3:-23140787 | None:intergenic |
ATGCATTGCATAGTGTCTTT+GGG | 0.368727 | 7.3:-23140858 | None:intergenic |
AATGGGCCTGCCCTCCATTG+TGG | 0.406749 | 7.3:-23140832 | None:intergenic |
TATTGGATAAGATGCTTAAA+GGG | 0.429212 | 7.3:-23140564 | None:intergenic |
CAATGTGTACACCTCCTTGT+TGG | 0.437336 | 7.3:-23140793 | None:intergenic |
AAATTCACACAAGAAAGTTA+TGG | 0.446713 | 7.3:+23140963 | MS.gene08224:CDS |
AGATTATGAAGTGGTTGAAA+AGG | 0.475929 | 7.3:+23140699 | MS.gene08224:CDS |
GTAAAAGTACACAACTTTGT+GGG | 0.484296 | 7.3:-23140387 | None:intergenic |
TAGTGAACTCATGGTACCTA+AGG | 0.486078 | 7.3:+23140657 | MS.gene08224:CDS |
GGTAAAAGTACACAACTTTG+TGG | 0.499157 | 7.3:-23140388 | None:intergenic |
CAGGCAAAGCAAGAAGCAAA+AGG | 0.500793 | 7.3:+23140509 | MS.gene08224:CDS |
AGGACCCCACAATGGAGGGC+AGG | 0.512119 | 7.3:+23140826 | MS.gene08224:CDS |
ATTATGTAGGAAGTGGATGT+TGG | 0.517271 | 7.3:+23140322 | MS.gene08224:intron |
TTGAAAGGTTAGAGCAAGAA+GGG | 0.531774 | 7.3:-23139952 | None:intergenic |
CTTGAAAGGTTAGAGCAAGA+AGG | 0.532182 | 7.3:-23139953 | None:intergenic |
ACAAAAGTTGGACTCTTAGC+AGG | 0.532481 | 7.3:-23140925 | None:intergenic |
TAGTGAGTGCAAACAAGAGA+AGG | 0.541293 | 7.3:+23139922 | MS.gene08224:CDS |
GTTAGCTGATAGTGAACTCA+TGG | 0.566356 | 7.3:+23140648 | MS.gene08224:CDS |
TGGGCCTGCCCTCCATTGTG+GGG | 0.567754 | 7.3:-23140830 | None:intergenic |
GGTCATCAAGGCTACTTGAA+AGG | 0.569542 | 7.3:-23139967 | None:intergenic |
GAGCAGAAAAGAGGTCATCA+AGG | 0.570986 | 7.3:-23139979 | None:intergenic |
TGTGGTGTGAGGTACAAATC+TGG | 0.576464 | 7.3:+23140880 | MS.gene08224:CDS |
GTAGGAAGTGGATGTTGGAA+TGG | 0.583317 | 7.3:+23140327 | MS.gene08224:intron |
TTTGAGGTTGATGTTAACAA+TGG | 0.593552 | 7.3:+23140757 | MS.gene08224:CDS |
ACAAAGGACCCCACAATGGA+GGG | 0.595325 | 7.3:+23140822 | MS.gene08224:CDS |
CTCTTAGCAGGTCTATACTC+AGG | 0.605156 | 7.3:-23140913 | None:intergenic |
CACAAAGGACCCCACAATGG+AGG | 0.605327 | 7.3:+23140821 | MS.gene08224:CDS |
ACAAGAAAGTTATGGAGATG+AGG | 0.611218 | 7.3:+23140971 | MS.gene08224:CDS |
GGTAACAAAAGATTATGAAG+TGG | 0.619135 | 7.3:+23140690 | MS.gene08224:CDS |
AGTGAACTCATGGTACCTAA+GGG | 0.625585 | 7.3:+23140658 | MS.gene08224:CDS |
AACCACTAACACTACTCACT+AGG | 0.631055 | 7.3:-23141018 | None:intergenic |
AAGTGGATGTTGGAATGGAA+TGG | 0.634243 | 7.3:+23140332 | MS.gene08224:CDS |
GTCAAAATCCAATTCCAACA+AGG | 0.638845 | 7.3:+23140779 | MS.gene08224:CDS |
GTACACATTGTTTGTCACAA+AGG | 0.655851 | 7.3:+23140806 | MS.gene08224:CDS |
GTGTGAGGTACAAATCTGGT+AGG | 0.664094 | 7.3:+23140884 | MS.gene08224:CDS |
TGTCACAAAGGACCCCACAA+TGG | 0.681006 | 7.3:+23140818 | MS.gene08224:CDS |
AAAATCCAATTCCAACAAGG+AGG | 0.704851 | 7.3:+23140782 | MS.gene08224:CDS |
TATGCAATGCATGTGGTGTG+AGG | 0.734829 | 7.3:+23140869 | MS.gene08224:CDS |
AAGACACTATGCAATGCATG+TGG | 0.751831 | 7.3:+23140862 | MS.gene08224:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAGAAACATAATATTAA+AGG | - | chr7.3:23140219-23140238 | None:intergenic | 10.0% |
!!! | TATTATGTTTCTAATTTTCT+TGG | + | chr7.3:23140223-23140242 | MS.gene08224:intron | 15.0% |
!!! | TGTAGTTTTTGCTAAAATTA+TGG | + | chr7.3:23140267-23140286 | MS.gene08224:intron | 20.0% |
! | AAATTCACACAAGAAAGTTA+TGG | + | chr7.3:23140963-23140982 | MS.gene08224:CDS | 25.0% |
! | GAAAAACATATGTTAGAACA+AGG | - | chr7.3:23140134-23140153 | None:intergenic | 25.0% |
! | TATTGGATAAGATGCTTAAA+GGG | - | chr7.3:23140567-23140586 | None:intergenic | 25.0% |
! | TGAAAAGGAAATTGTGAAAA+AGG | + | chr7.3:23140714-23140733 | MS.gene08224:CDS | 25.0% |
! | TTTGACCAAACAAATTATGT+AGG | + | chr7.3:23140309-23140328 | MS.gene08224:intron | 25.0% |
AGATTATGAAGTGGTTGAAA+AGG | + | chr7.3:23140699-23140718 | MS.gene08224:CDS | 30.0% | |
AGGAAATTGTGAAAAAGGAA+AGG | + | chr7.3:23140719-23140738 | MS.gene08224:CDS | 30.0% | |
CAAACAAATTATGTAGGAAG+TGG | + | chr7.3:23140315-23140334 | MS.gene08224:intron | 30.0% | |
CTCTCTTAAAACAAGCTTAT+TGG | + | chr7.3:23140626-23140645 | MS.gene08224:CDS | 30.0% | |
GGTAACAAAAGATTATGAAG+TGG | + | chr7.3:23140690-23140709 | MS.gene08224:CDS | 30.0% | |
GTATTGGATAAGATGCTTAA+AGG | - | chr7.3:23140568-23140587 | None:intergenic | 30.0% | |
TGCAAAAAACTCACAAAAGT+TGG | - | chr7.3:23140940-23140959 | None:intergenic | 30.0% | |
! | AACATAGTGACTCATTTTGA+GGG | - | chr7.3:23140597-23140616 | None:intergenic | 30.0% |
! | CACTAGAAACTTGTACATTT+TGG | - | chr7.3:23139907-23139926 | None:intergenic | 30.0% |
! | GTAAAAGTACACAACTTTGT+GGG | - | chr7.3:23140390-23140409 | None:intergenic | 30.0% |
!! | AAAGGAAAGGTTTGATTTTG+AGG | + | chr7.3:23140732-23140751 | MS.gene08224:CDS | 30.0% |
!! | AAGGAAAGGTTTGATTTTGA+GGG | + | chr7.3:23140733-23140752 | MS.gene08224:CDS | 30.0% |
!! | ATTTTGAGGGTTTAAGGTAT+TGG | - | chr7.3:23140584-23140603 | None:intergenic | 30.0% |
!! | CACTTCCTACATAATTTGTT+TGG | - | chr7.3:23140317-23140336 | None:intergenic | 30.0% |
!! | GACTCATTTTGTTCTTGTTT+TGG | - | chr7.3:23140475-23140494 | None:intergenic | 30.0% |
!! | GTTGTGTTTTGAACATTAGA+GGG | - | chr7.3:23140412-23140431 | None:intergenic | 30.0% |
!! | TGTTGTGTTTTGAACATTAG+AGG | - | chr7.3:23140413-23140432 | None:intergenic | 30.0% |
!! | TTTGAGGTTGATGTTAACAA+TGG | + | chr7.3:23140757-23140776 | MS.gene08224:CDS | 30.0% |
!!! | CAATAAGCTTGTTTTAAGAG+AGG | - | chr7.3:23140628-23140647 | None:intergenic | 30.0% |
AAAATCCAATTCCAACAAGG+AGG | + | chr7.3:23140782-23140801 | MS.gene08224:CDS | 35.0% | |
ACAAGAAAGTTATGGAGATG+AGG | + | chr7.3:23140971-23140990 | MS.gene08224:CDS | 35.0% | |
ATGCATTGCATAGTGTCTTT+GGG | - | chr7.3:23140861-23140880 | None:intergenic | 35.0% | |
ATTATGTAGGAAGTGGATGT+TGG | + | chr7.3:23140322-23140341 | MS.gene08224:intron | 35.0% | |
CATAACTAGGAAGGACTTAT+AGG | - | chr7.3:23140110-23140129 | None:intergenic | 35.0% | |
GTACACATTGTTTGTCACAA+AGG | + | chr7.3:23140806-23140825 | MS.gene08224:CDS | 35.0% | |
GTCAAAATCCAATTCCAACA+AGG | + | chr7.3:23140779-23140798 | MS.gene08224:CDS | 35.0% | |
GTTAGAACAAGGACATAACT+AGG | - | chr7.3:23140123-23140142 | None:intergenic | 35.0% | |
TTGAAAGGTTAGAGCAAGAA+GGG | - | chr7.3:23139955-23139974 | None:intergenic | 35.0% | |
! | AAGATGCTTAAAGGGTCTTT+TGG | - | chr7.3:23140559-23140578 | None:intergenic | 35.0% |
! | GAACATAGTGACTCATTTTG+AGG | - | chr7.3:23140598-23140617 | None:intergenic | 35.0% |
! | GGTAAAAGTACACAACTTTG+TGG | - | chr7.3:23140391-23140410 | None:intergenic | 35.0% |
!! | AGGAAAGGTTTGATTTTGAG+GGG | + | chr7.3:23140734-23140753 | MS.gene08224:CDS | 35.0% |
!! | TGACTCATTTTGAGGGTTTA+AGG | - | chr7.3:23140590-23140609 | None:intergenic | 35.0% |
!!! | AAGCTTGTTTTAAGAGAGGT+GGG | - | chr7.3:23140624-23140643 | None:intergenic | 35.0% |
!!! | TAAGCTTGTTTTAAGAGAGG+TGG | - | chr7.3:23140625-23140644 | None:intergenic | 35.0% |
AAGACACTATGCAATGCATG+TGG | + | chr7.3:23140862-23140881 | MS.gene08224:CDS | 40.0% | |
AAGTGGATGTTGGAATGGAA+TGG | + | chr7.3:23140332-23140351 | MS.gene08224:CDS | 40.0% | |
ACAAAAGTTGGACTCTTAGC+AGG | - | chr7.3:23140928-23140947 | None:intergenic | 40.0% | |
AGTGAACTCATGGTACCTAA+GGG | + | chr7.3:23140658-23140677 | MS.gene08224:CDS | 40.0% | |
ATAGTGTCTTTGGGCCTAAT+GGG | - | chr7.3:23140852-23140871 | None:intergenic | 40.0% | |
CATGCATTGCATAGTGTCTT+TGG | - | chr7.3:23140862-23140881 | None:intergenic | 40.0% | |
CTTGAAAGGTTAGAGCAAGA+AGG | - | chr7.3:23139956-23139975 | None:intergenic | 40.0% | |
GAACAAGGACATAACTAGGA+AGG | - | chr7.3:23140119-23140138 | None:intergenic | 40.0% | |
GGTTTCTTCACTGTGTTTGA+AGG | - | chr7.3:23140454-23140473 | None:intergenic | 40.0% | |
TAGTGAACTCATGGTACCTA+AGG | + | chr7.3:23140657-23140676 | MS.gene08224:CDS | 40.0% | |
TAGTGAGTGCAAACAAGAGA+AGG | + | chr7.3:23139922-23139941 | MS.gene08224:CDS | 40.0% | |
! | CCTCTTTTCTGCTCAAAACA+CGG | + | chr7.3:23139988-23140007 | MS.gene08224:CDS | 40.0% |
! | GTTAGCTGATAGTGAACTCA+TGG | + | chr7.3:23140648-23140667 | MS.gene08224:CDS | 40.0% |
!! | AAAGGGTCTTTTGGTCTTCT+TGG | - | chr7.3:23140550-23140569 | None:intergenic | 40.0% |
!! | GTTACCTCTTTTTCACCCTT+AGG | - | chr7.3:23140676-23140695 | None:intergenic | 40.0% |
!! | GTTTGATTTTGAGGGGTTTG+AGG | + | chr7.3:23140741-23140760 | MS.gene08224:CDS | 40.0% |
CAATGTGTACACCTCCTTGT+TGG | - | chr7.3:23140796-23140815 | None:intergenic | 45.0% | |
CAGGCAAAGCAAGAAGCAAA+AGG | + | chr7.3:23140509-23140528 | MS.gene08224:CDS | 45.0% | |
CATAGTGTCTTTGGGCCTAA+TGG | - | chr7.3:23140853-23140872 | None:intergenic | 45.0% | |
CTCTTAGCAGGTCTATACTC+AGG | - | chr7.3:23140916-23140935 | None:intergenic | 45.0% | |
GAGCAGAAAAGAGGTCATCA+AGG | - | chr7.3:23139982-23140001 | None:intergenic | 45.0% | |
GGTACCTAAGGGTGAAAAAG+AGG | + | chr7.3:23140669-23140688 | MS.gene08224:CDS | 45.0% | |
GGTCATCAAGGCTACTTGAA+AGG | - | chr7.3:23139970-23139989 | None:intergenic | 45.0% | |
GTACACCTCCTTGTTGGAAT+TGG | - | chr7.3:23140790-23140809 | None:intergenic | 45.0% | |
GTAGGAAGTGGATGTTGGAA+TGG | + | chr7.3:23140327-23140346 | MS.gene08224:intron | 45.0% | |
GTGTGAGGTACAAATCTGGT+AGG | + | chr7.3:23140884-23140903 | MS.gene08224:CDS | 45.0% | |
TATGCAATGCATGTGGTGTG+AGG | + | chr7.3:23140869-23140888 | MS.gene08224:CDS | 45.0% | |
TGTGGTGTGAGGTACAAATC+TGG | + | chr7.3:23140880-23140899 | MS.gene08224:CDS | 45.0% | |
! | CTTTTGCTTCTTGCTTTGCC+TGG | - | chr7.3:23140511-23140530 | None:intergenic | 45.0% |
! | GAGTCAACTTTTGCAGTTCC+AGG | + | chr7.3:23140490-23140509 | MS.gene08224:CDS | 45.0% |
!! | CCGTGTTTTGAGCAGAAAAG+AGG | - | chr7.3:23139991-23140010 | None:intergenic | 45.0% |
ACAAAGGACCCCACAATGGA+GGG | + | chr7.3:23140822-23140841 | MS.gene08224:CDS | 50.0% | |
TGTCACAAAGGACCCCACAA+TGG | + | chr7.3:23140818-23140837 | MS.gene08224:CDS | 50.0% | |
CACAAAGGACCCCACAATGG+AGG | + | chr7.3:23140821-23140840 | MS.gene08224:CDS | 55.0% | |
AATGGGCCTGCCCTCCATTG+TGG | - | chr7.3:23140835-23140854 | None:intergenic | 60.0% | |
ATGGGCCTGCCCTCCATTGT+GGG | - | chr7.3:23140834-23140853 | None:intergenic | 60.0% | |
CAATGGAGGGCAGGCCCATT+AGG | + | chr7.3:23140835-23140854 | MS.gene08224:CDS | 60.0% | |
AGGACCCCACAATGGAGGGC+AGG | + | chr7.3:23140826-23140845 | MS.gene08224:CDS | 65.0% | |
TGGGCCTGCCCTCCATTGTG+GGG | - | chr7.3:23140833-23140852 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 23139893 | 23141029 | 23139893 | ID=MS.gene08224 |
chr7.3 | mRNA | 23139893 | 23141029 | 23139893 | ID=MS.gene08224.t1;Parent=MS.gene08224 |
chr7.3 | exon | 23139893 | 23140009 | 23139893 | ID=MS.gene08224.t1.exon1;Parent=MS.gene08224.t1 |
chr7.3 | CDS | 23139893 | 23140009 | 23139893 | ID=cds.MS.gene08224.t1;Parent=MS.gene08224.t1 |
chr7.3 | exon | 23140331 | 23141029 | 23140331 | ID=MS.gene08224.t1.exon2;Parent=MS.gene08224.t1 |
chr7.3 | CDS | 23140331 | 23141029 | 23140331 | ID=cds.MS.gene08224.t1;Parent=MS.gene08224.t1 |
Gene Sequence |
Protein sequence |