Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08299.t1 | RHN42409.1 | 92.9 | 495 | 22 | 6 | 1 | 485 | 1 | 492 | 8.50E-126 | 460.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08299.t1 | Q93V43 | 78.2 | 101 | 21 | 1 | 31 | 131 | 12 | 111 | 3.1e-36 | 154.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08299.t1 | A0A396GMP2 | 92.9 | 495 | 22 | 6 | 1 | 485 | 1 | 492 | 6.1e-126 | 460.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08299.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08299.t1 | MTR_7g015010 | 71.622 | 74 | 21 | 0 | 52 | 125 | 47 | 120 | 1.67e-29 | 119 |
| MS.gene08299.t1 | MTR_4g109660 | 69.863 | 73 | 22 | 0 | 52 | 124 | 46 | 118 | 2.56e-28 | 114 |
| MS.gene08299.t1 | MTR_6g015350 | 72.222 | 72 | 20 | 0 | 52 | 123 | 39 | 110 | 7.13e-28 | 114 |
| MS.gene08299.t1 | MTR_3g026050 | 65.278 | 72 | 25 | 0 | 52 | 123 | 47 | 118 | 5.59e-26 | 109 |
| MS.gene08299.t1 | MTR_4g079580 | 70.588 | 68 | 20 | 0 | 56 | 123 | 16 | 83 | 2.30e-25 | 107 |
| MS.gene08299.t1 | MTR_2g090960 | 72.059 | 68 | 19 | 0 | 56 | 123 | 18 | 85 | 2.56e-25 | 106 |
| MS.gene08299.t1 | MTR_2g078200 | 52.174 | 92 | 41 | 1 | 56 | 144 | 14 | 105 | 1.09e-22 | 98.6 |
| MS.gene08299.t1 | MTR_6g017055 | 37.572 | 173 | 72 | 5 | 56 | 214 | 120 | 270 | 9.77e-21 | 94.7 |
| MS.gene08299.t1 | MTR_4g111935 | 37.654 | 162 | 81 | 6 | 58 | 219 | 128 | 269 | 6.36e-18 | 85.9 |
| MS.gene08299.t1 | MTR_1g103380 | 56.061 | 66 | 29 | 0 | 61 | 126 | 200 | 265 | 3.08e-16 | 81.6 |
| MS.gene08299.t1 | MTR_7g018500 | 59.649 | 57 | 23 | 0 | 64 | 120 | 122 | 178 | 7.64e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08299.t1 | AT4G18390 | 40.512 | 469 | 131 | 19 | 41 | 485 | 21 | 365 | 1.90e-72 | 234 |
| MS.gene08299.t1 | AT4G18390 | 40.512 | 469 | 131 | 19 | 41 | 485 | 21 | 365 | 1.90e-72 | 234 |
| MS.gene08299.t1 | AT1G30210 | 45.211 | 261 | 76 | 8 | 35 | 295 | 25 | 218 | 1.21e-47 | 167 |
| MS.gene08299.t1 | AT1G30210 | 45.211 | 261 | 76 | 8 | 35 | 295 | 25 | 218 | 1.21e-47 | 167 |
| MS.gene08299.t1 | AT3G02150 | 75.000 | 72 | 18 | 0 | 52 | 123 | 64 | 135 | 3.01e-30 | 119 |
| MS.gene08299.t1 | AT3G02150 | 75.000 | 72 | 18 | 0 | 52 | 123 | 64 | 135 | 1.07e-29 | 119 |
| MS.gene08299.t1 | AT5G60970 | 68.056 | 72 | 23 | 0 | 52 | 123 | 53 | 124 | 3.86e-28 | 115 |
| MS.gene08299.t1 | AT5G08070 | 66.667 | 72 | 24 | 0 | 52 | 123 | 23 | 94 | 5.46e-27 | 109 |
| MS.gene08299.t1 | AT5G08070 | 66.667 | 72 | 24 | 0 | 52 | 123 | 23 | 94 | 5.46e-27 | 109 |
| MS.gene08299.t1 | AT2G31070 | 75.385 | 65 | 16 | 0 | 56 | 120 | 23 | 87 | 1.96e-25 | 107 |
| MS.gene08299.t1 | AT1G53230 | 54.639 | 97 | 30 | 2 | 31 | 124 | 29 | 114 | 8.24e-25 | 106 |
| MS.gene08299.t1 | AT1G53230 | 54.639 | 97 | 30 | 2 | 31 | 124 | 29 | 114 | 8.24e-25 | 106 |
| MS.gene08299.t1 | AT3G15030 | 66.667 | 72 | 21 | 1 | 56 | 124 | 39 | 110 | 5.99e-24 | 104 |
| MS.gene08299.t1 | AT3G15030 | 66.667 | 72 | 21 | 1 | 56 | 124 | 39 | 110 | 5.99e-24 | 104 |
| MS.gene08299.t1 | AT3G15030 | 66.667 | 72 | 21 | 1 | 56 | 124 | 39 | 110 | 5.99e-24 | 104 |
| MS.gene08299.t1 | AT3G15030 | 66.667 | 72 | 21 | 1 | 56 | 124 | 39 | 110 | 5.99e-24 | 104 |
| MS.gene08299.t1 | AT1G67260 | 35.256 | 156 | 83 | 5 | 63 | 213 | 88 | 230 | 1.13e-17 | 84.7 |
| MS.gene08299.t1 | AT1G67260 | 35.256 | 156 | 83 | 5 | 63 | 213 | 88 | 230 | 1.13e-17 | 84.7 |
| MS.gene08299.t1 | AT1G67260 | 35.256 | 156 | 83 | 5 | 63 | 213 | 88 | 230 | 1.62e-17 | 84.3 |
| MS.gene08299.t1 | AT1G68800 | 45.070 | 71 | 39 | 0 | 50 | 120 | 100 | 170 | 1.16e-14 | 75.9 |
| MS.gene08299.t1 | AT1G68800 | 45.070 | 71 | 39 | 0 | 50 | 120 | 100 | 170 | 1.45e-14 | 75.5 |
| MS.gene08299.t1 | AT3G18550 | 44.776 | 67 | 37 | 0 | 54 | 120 | 140 | 206 | 3.30e-13 | 72.0 |
| MS.gene08299.t1 | AT3G18550 | 44.776 | 67 | 37 | 0 | 54 | 120 | 140 | 206 | 3.50e-13 | 71.6 |
| MS.gene08299.t1 | AT3G18550 | 44.776 | 67 | 37 | 0 | 54 | 120 | 140 | 206 | 3.50e-13 | 71.6 |
| MS.gene08299.t1 | AT3G18550 | 44.776 | 67 | 37 | 0 | 54 | 120 | 140 | 206 | 4.47e-13 | 71.6 |
Find 77 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGGCCTTGCTGGTTATAAT+AGG | 0.198318 | 4.3:+17037398 | MS.gene08299:CDS |
| ATCATTCTTCAAGAATTATA+AGG | 0.232662 | 4.3:+17036378 | MS.gene08299:CDS |
| AATCTTTCTTTGTCTAAATC+TGG | 0.297789 | 4.3:+17036746 | MS.gene08299:CDS |
| CAAAGGGTTTAAGAGATAGA+AGG | 0.305323 | 4.3:+17036450 | MS.gene08299:CDS |
| ATAAGGGTTTCAAGAGCTTC+TGG | 0.308884 | 4.3:+17036395 | MS.gene08299:CDS |
| TGATCTGGTATGAATGAAAA+TGG | 0.312077 | 4.3:-17037292 | None:intergenic |
| ACAATCTCTTCGGGCCTTGC+TGG | 0.321697 | 4.3:+17037388 | MS.gene08299:CDS |
| CTGAATTTCACAATCTCTTC+GGG | 0.336767 | 4.3:+17037379 | MS.gene08299:CDS |
| AACTCTTGGGAATTTATGTT+GGG | 0.338800 | 4.3:-17036258 | None:intergenic |
| CAACTCTTGGGAATTTATGT+TGG | 0.340066 | 4.3:-17036259 | None:intergenic |
| TACTTTAGTCCAATGTTTCC+AGG | 0.350694 | 4.3:+17037112 | MS.gene08299:CDS |
| ATCATTAGAAGAGGTGGAGG+AGG | 0.362000 | 4.3:+17036311 | MS.gene08299:CDS |
| ATGAAAGCACAAATCTTAAC+AGG | 0.378339 | 4.3:+17036339 | MS.gene08299:CDS |
| GGTTCTTCAGCTGACCCTCT+TGG | 0.378386 | 4.3:-17037022 | None:intergenic |
| GGGCCTTGCTGGTTATAATA+GGG | 0.382791 | 4.3:+17037399 | MS.gene08299:CDS |
| AACCATTCAACAGCTTTACT+TGG | 0.387306 | 4.3:-17036539 | None:intergenic |
| AGACAAAAGAGACGGTGAAT+TGG | 0.387420 | 4.3:-17037434 | None:intergenic |
| TCATTCTTCAAGAATTATAA+GGG | 0.401881 | 4.3:+17036379 | MS.gene08299:CDS |
| ATCTTAACAGGTTCAATAGT+TGG | 0.402776 | 4.3:+17036351 | MS.gene08299:CDS |
| TCTGAATTTCACAATCTCTT+CGG | 0.406508 | 4.3:+17037378 | MS.gene08299:CDS |
| CTCAACAACTCATTATTCTC+TGG | 0.418248 | 4.3:+17036602 | MS.gene08299:CDS |
| TGACCCTCTTGGACTATTTG+TGG | 0.423757 | 4.3:-17037011 | None:intergenic |
| TCTGAGACAAGTAAAGGTTC+TGG | 0.423833 | 4.3:+17036782 | MS.gene08299:CDS |
| AAAACTGATGGTGTTGAATC+TGG | 0.424465 | 4.3:-17037606 | None:intergenic |
| GAGATCATTAGAAGAGGTGG+AGG | 0.430301 | 4.3:+17036308 | MS.gene08299:CDS |
| GAGCTTCTGGTGGAAAAGAT+AGG | 0.444208 | 4.3:+17036408 | MS.gene08299:CDS |
| AGAGAGATCATTAGAAGAGG+TGG | 0.446541 | 4.3:+17036305 | MS.gene08299:CDS |
| GCTCTTGATGAAGAAGATCC+TGG | 0.452930 | 4.3:-17037130 | None:intergenic |
| CTCTTTCTCTAGCTTTGACA+CGG | 0.453585 | 4.3:-17036838 | None:intergenic |
| TTCGGTTCATGATGCTGAAA+TGG | 0.457200 | 4.3:+17036688 | MS.gene08299:CDS |
| TGATGATTATTCTCCATTGT+AGG | 0.461933 | 4.3:-17037571 | None:intergenic |
| GAATGAAGCTGTTTGAGAAA+TGG | 0.464042 | 4.3:-17036948 | None:intergenic |
| GTTTAAGAGATAGAAGGGTT+AGG | 0.467094 | 4.3:+17036456 | MS.gene08299:CDS |
| AGTAAAGTAATGACTTCAAA+GGG | 0.486371 | 4.3:+17036434 | MS.gene08299:CDS |
| TTCACTGAACTACTTACTTG+TGG | 0.489069 | 4.3:+17036968 | MS.gene08299:CDS |
| AAGTGAACAAGGTGTTGATT+CGG | 0.495908 | 4.3:+17036670 | MS.gene08299:CDS |
| GAAGAAGATCCTGGAAACAT+TGG | 0.496215 | 4.3:-17037121 | None:intergenic |
| ATTCAACAGCTTTACTTGGT+TGG | 0.503152 | 4.3:-17036535 | None:intergenic |
| ATGGAATTCTTCAGCACCAA+TGG | 0.510387 | 4.3:+17037084 | MS.gene08299:CDS |
| GCTGAAGGTGAAGCTGAAGC+AGG | 0.512953 | 4.3:-17037544 | None:intergenic |
| GAATCAACACCTTGTTCACT+TGG | 0.514307 | 4.3:-17036668 | None:intergenic |
| ACCTTCAGCTGCTCCTACAA+TGG | 0.515548 | 4.3:+17037558 | MS.gene08299:CDS |
| CAGCTCTATTCAGATCAGAA+AGG | 0.516369 | 4.3:+17037655 | MS.gene08299:CDS |
| TAATCATTGTTGTTCCCGCT+TGG | 0.517589 | 4.3:-17037352 | None:intergenic |
| AGCTCTATTCAGATCAGAAA+GGG | 0.521442 | 4.3:+17037656 | MS.gene08299:CDS |
| AAAGGGTTTAAGAGATAGAA+GGG | 0.523321 | 4.3:+17036451 | MS.gene08299:CDS |
| GGACTAAAGTAATGATCCAT+TGG | 0.525062 | 4.3:-17037100 | None:intergenic |
| AATAATGAGTTGTTGAGTGA+AGG | 0.525467 | 4.3:-17036596 | None:intergenic |
| GCTGAAATGGTTGTTGAGAA+TGG | 0.538563 | 4.3:+17036701 | MS.gene08299:CDS |
| TAGTAAAGTAATGACTTCAA+AGG | 0.544163 | 4.3:+17036433 | MS.gene08299:CDS |
| GAAAATGAAGAAGACAATCA+TGG | 0.546258 | 4.3:+17036281 | MS.gene08299:CDS |
| TTCTCACCACTAGTACTGAA+TGG | 0.555766 | 4.3:-17037226 | None:intergenic |
| AACCAAGTAAAGCTGTTGAA+TGG | 0.558567 | 4.3:+17036537 | MS.gene08299:CDS |
| TCAAAGCTAGAGAAAGAGCA+AGG | 0.568563 | 4.3:+17036843 | MS.gene08299:CDS |
| GGCCTTGCTGGTTATAATAG+GGG | 0.569734 | 4.3:+17037400 | MS.gene08299:CDS |
| AATAATCAGCCAAGTGAACA+AGG | 0.578757 | 4.3:+17036659 | MS.gene08299:CDS |
| GTTTCACCATTCAGTACTAG+TGG | 0.581208 | 4.3:+17037220 | MS.gene08299:CDS |
| AGATTGTTGGATCCATCTAA+AGG | 0.583522 | 4.3:-17037481 | None:intergenic |
| AGCACTTCTGAGACAAGTAA+AGG | 0.584944 | 4.3:+17036776 | MS.gene08299:CDS |
| CTTCTTCTACTCAACCAAGC+GGG | 0.586398 | 4.3:+17037338 | MS.gene08299:CDS |
| TATGATCTTCAAGATAGACT+TGG | 0.589871 | 4.3:+17036506 | MS.gene08299:CDS |
| GGAAAGAACTGCTAAAGAGA+AGG | 0.598537 | 4.3:+17036865 | MS.gene08299:CDS |
| GAGACGGTGAATTGGACTGA+AGG | 0.599533 | 4.3:-17037426 | None:intergenic |
| GACAACAGCAGCAGCAACAA+TGG | 0.601712 | 4.3:+17037065 | MS.gene08299:CDS |
| GCATGATTGTGGTATGGAGG+AGG | 0.610814 | 4.3:+17036223 | None:intergenic |
| AGATCATATGATGCAAAATG+TGG | 0.615631 | 4.3:+17037309 | MS.gene08299:CDS |
| CAAAGCTAGAGAAAGAGCAA+GGG | 0.619608 | 4.3:+17036844 | MS.gene08299:CDS |
| GGAAGAGAGATCATTAGAAG+AGG | 0.619686 | 4.3:+17036302 | MS.gene08299:CDS |
| AGGGTTTCAAGAGCTTCTGG+TGG | 0.620264 | 4.3:+17036398 | MS.gene08299:CDS |
| AGACGGTGAATTGGACTGAA+GGG | 0.624249 | 4.3:-17037425 | None:intergenic |
| GCCTTGCTGGTTATAATAGG+GGG | 0.632630 | 4.3:+17037401 | MS.gene08299:CDS |
| TCCATTGTAGGAGCAGCTGA+AGG | 0.640995 | 4.3:-17037559 | None:intergenic |
| TGAAGATGAGACAAAAGAGA+CGG | 0.658703 | 4.3:-17037442 | None:intergenic |
| GATGGTGTTGAATCTGGTGA+TGG | 0.659814 | 4.3:-17037600 | None:intergenic |
| ACTACCACAAATAGTCCAAG+AGG | 0.670044 | 4.3:+17037007 | MS.gene08299:CDS |
| TCTTCTTCTACTCAACCAAG+CGG | 0.675315 | 4.3:+17037337 | MS.gene08299:CDS |
| CTACCACAAATAGTCCAAGA+GGG | 0.751118 | 4.3:+17037008 | MS.gene08299:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATTCTTCAAGAATTATA+AGG | + | chr4.3:17036378-17036397 | MS.gene08299:CDS | 20.0% |
| !! | TCATTCTTCAAGAATTATAA+GGG | + | chr4.3:17036379-17036398 | MS.gene08299:CDS | 20.0% |
| ! | AATCTTTCTTTGTCTAAATC+TGG | + | chr4.3:17036746-17036765 | MS.gene08299:CDS | 25.0% |
| ! | AGTAAAGTAATGACTTCAAA+GGG | + | chr4.3:17036434-17036453 | MS.gene08299:CDS | 25.0% |
| ! | TAGTAAAGTAATGACTTCAA+AGG | + | chr4.3:17036433-17036452 | MS.gene08299:CDS | 25.0% |
| !!! | AACAATCTACCTTTTTTCAT+GGG | + | chr4.3:17037496-17037515 | MS.gene08299:CDS | 25.0% |
| AAAGGGTTTAAGAGATAGAA+GGG | + | chr4.3:17036451-17036470 | MS.gene08299:CDS | 30.0% | |
| AACTCTTGGGAATTTATGTT+GGG | - | chr4.3:17036261-17036280 | None:intergenic | 30.0% | |
| AATAATGAGTTGTTGAGTGA+AGG | - | chr4.3:17036599-17036618 | None:intergenic | 30.0% | |
| AGATCATATGATGCAAAATG+TGG | + | chr4.3:17037309-17037328 | MS.gene08299:CDS | 30.0% | |
| ATCTTAACAGGTTCAATAGT+TGG | + | chr4.3:17036351-17036370 | MS.gene08299:CDS | 30.0% | |
| CAAAAACAGATGAAAACTGA+TGG | - | chr4.3:17037621-17037640 | None:intergenic | 30.0% | |
| CATCATCATCATCATCTATT+AGG | + | chr4.3:17037154-17037173 | MS.gene08299:CDS | 30.0% | |
| CATGAAAAAAGGTAGATTGT+TGG | - | chr4.3:17037497-17037516 | None:intergenic | 30.0% | |
| GAAAATGAAGAAGACAATCA+TGG | + | chr4.3:17036281-17036300 | MS.gene08299:CDS | 30.0% | |
| TATGATCTTCAAGATAGACT+TGG | + | chr4.3:17036506-17036525 | MS.gene08299:CDS | 30.0% | |
| TCTGAATTTCACAATCTCTT+CGG | + | chr4.3:17037378-17037397 | MS.gene08299:CDS | 30.0% | |
| TGATCTGGTATGAATGAAAA+TGG | - | chr4.3:17037295-17037314 | None:intergenic | 30.0% | |
| TGATGATTATTCTCCATTGT+AGG | - | chr4.3:17037574-17037593 | None:intergenic | 30.0% | |
| ! | ACATTTTGCATCATATGATC+TGG | - | chr4.3:17037310-17037329 | None:intergenic | 30.0% |
| ! | ATGAAAGCACAAATCTTAAC+AGG | + | chr4.3:17036339-17036358 | MS.gene08299:CDS | 30.0% |
| ! | CTTCTTCATTTTCAACTCTT+GGG | - | chr4.3:17036274-17036293 | None:intergenic | 30.0% |
| ! | TCTTCTTCATTTTCAACTCT+TGG | - | chr4.3:17036275-17036294 | None:intergenic | 30.0% |
| ! | TTTTCAGTTTCACCTTTAGA+TGG | + | chr4.3:17037469-17037488 | MS.gene08299:CDS | 30.0% |
| !! | CTAGCTTTGTTAAAAAAGCT+AGG | - | chr4.3:17037046-17037065 | None:intergenic | 30.0% |
| !!! | CAACAATCTACCTTTTTTCA+TGG | + | chr4.3:17037495-17037514 | MS.gene08299:CDS | 30.0% |
| !!! | CAGTTTTCATCTGTTTTTGA+TGG | + | chr4.3:17037622-17037641 | MS.gene08299:CDS | 30.0% |
| AACCAAGTAAAGCTGTTGAA+TGG | + | chr4.3:17036537-17036556 | MS.gene08299:CDS | 35.0% | |
| AACCATTCAACAGCTTTACT+TGG | - | chr4.3:17036542-17036561 | None:intergenic | 35.0% | |
| AATAATCAGCCAAGTGAACA+AGG | + | chr4.3:17036659-17036678 | MS.gene08299:CDS | 35.0% | |
| AGATTGTTGGATCCATCTAA+AGG | - | chr4.3:17037484-17037503 | None:intergenic | 35.0% | |
| AGCTCTATTCAGATCAGAAA+GGG | + | chr4.3:17037656-17037675 | MS.gene08299:CDS | 35.0% | |
| ATTCAACAGCTTTACTTGGT+TGG | - | chr4.3:17036538-17036557 | None:intergenic | 35.0% | |
| CAAAGGGTTTAAGAGATAGA+AGG | + | chr4.3:17036450-17036469 | MS.gene08299:CDS | 35.0% | |
| CAACTCTTGGGAATTTATGT+TGG | - | chr4.3:17036262-17036281 | None:intergenic | 35.0% | |
| CTCAACAACTCATTATTCTC+TGG | + | chr4.3:17036602-17036621 | MS.gene08299:CDS | 35.0% | |
| CTGAATTTCACAATCTCTTC+GGG | + | chr4.3:17037379-17037398 | MS.gene08299:CDS | 35.0% | |
| GAATGAAGCTGTTTGAGAAA+TGG | - | chr4.3:17036951-17036970 | None:intergenic | 35.0% | |
| GGACTAAAGTAATGATCCAT+TGG | - | chr4.3:17037103-17037122 | None:intergenic | 35.0% | |
| GTTTAAGAGATAGAAGGGTT+AGG | + | chr4.3:17036456-17036475 | MS.gene08299:CDS | 35.0% | |
| TACTTTAGTCCAATGTTTCC+AGG | + | chr4.3:17037112-17037131 | MS.gene08299:CDS | 35.0% | |
| TGAAGATGAGACAAAAGAGA+CGG | - | chr4.3:17037445-17037464 | None:intergenic | 35.0% | |
| TTCACTGAACTACTTACTTG+TGG | + | chr4.3:17036968-17036987 | MS.gene08299:CDS | 35.0% | |
| ! | AAAACTGATGGTGTTGAATC+TGG | - | chr4.3:17037609-17037628 | None:intergenic | 35.0% |
| ! | CTCTTTTGTCTCATCTTCAA+AGG | + | chr4.3:17037446-17037465 | MS.gene08299:CDS | 35.0% |
| !! | AAGTGAACAAGGTGTTGATT+CGG | + | chr4.3:17036670-17036689 | MS.gene08299:CDS | 35.0% |
| !!! | AATCTACCTTTTTTCATGGG+AGG | + | chr4.3:17037499-17037518 | MS.gene08299:CDS | 35.0% |
| ACTACCACAAATAGTCCAAG+AGG | + | chr4.3:17037007-17037026 | MS.gene08299:CDS | 40.0% | |
| AGACAAAAGAGACGGTGAAT+TGG | - | chr4.3:17037437-17037456 | None:intergenic | 40.0% | |
| AGAGAGATCATTAGAAGAGG+TGG | + | chr4.3:17036305-17036324 | MS.gene08299:CDS | 40.0% | |
| ATAAGGGTTTCAAGAGCTTC+TGG | + | chr4.3:17036395-17036414 | MS.gene08299:CDS | 40.0% | |
| ATGGAATTCTTCAGCACCAA+TGG | + | chr4.3:17037084-17037103 | MS.gene08299:CDS | 40.0% | |
| CAAAGCTAGAGAAAGAGCAA+GGG | + | chr4.3:17036844-17036863 | MS.gene08299:CDS | 40.0% | |
| CAGCTCTATTCAGATCAGAA+AGG | + | chr4.3:17037655-17037674 | MS.gene08299:CDS | 40.0% | |
| CTACCACAAATAGTCCAAGA+GGG | + | chr4.3:17037008-17037027 | MS.gene08299:CDS | 40.0% | |
| GAAGAAGATCCTGGAAACAT+TGG | - | chr4.3:17037124-17037143 | None:intergenic | 40.0% | |
| GAATCAACACCTTGTTCACT+TGG | - | chr4.3:17036671-17036690 | None:intergenic | 40.0% | |
| GCTGAAATGGTTGTTGAGAA+TGG | + | chr4.3:17036701-17036720 | MS.gene08299:CDS | 40.0% | |
| GGAAAGAACTGCTAAAGAGA+AGG | + | chr4.3:17036865-17036884 | MS.gene08299:CDS | 40.0% | |
| GGAAGAGAGATCATTAGAAG+AGG | + | chr4.3:17036302-17036321 | MS.gene08299:CDS | 40.0% | |
| GTTTCACCATTCAGTACTAG+TGG | + | chr4.3:17037220-17037239 | MS.gene08299:CDS | 40.0% | |
| TCAAAGCTAGAGAAAGAGCA+AGG | + | chr4.3:17036843-17036862 | MS.gene08299:CDS | 40.0% | |
| TCTTCTTCTACTCAACCAAG+CGG | + | chr4.3:17037337-17037356 | MS.gene08299:CDS | 40.0% | |
| TTCGGTTCATGATGCTGAAA+TGG | + | chr4.3:17036688-17036707 | MS.gene08299:CDS | 40.0% | |
| ! | TAATCATTGTTGTTCCCGCT+TGG | - | chr4.3:17037355-17037374 | None:intergenic | 40.0% |
| ! | TCTGAGACAAGTAAAGGTTC+TGG | + | chr4.3:17036782-17036801 | MS.gene08299:CDS | 40.0% |
| ! | TTCTCACCACTAGTACTGAA+TGG | - | chr4.3:17037229-17037248 | None:intergenic | 40.0% |
| !! | AGCACTTCTGAGACAAGTAA+AGG | + | chr4.3:17036776-17036795 | MS.gene08299:CDS | 40.0% |
| !! | CTCTTTCTCTAGCTTTGACA+CGG | - | chr4.3:17036841-17036860 | None:intergenic | 40.0% |
| AGACGGTGAATTGGACTGAA+GGG | - | chr4.3:17037428-17037447 | None:intergenic | 45.0% | |
| ATCATTAGAAGAGGTGGAGG+AGG | + | chr4.3:17036311-17036330 | MS.gene08299:CDS | 45.0% | |
| CTTCTTCTACTCAACCAAGC+GGG | + | chr4.3:17037338-17037357 | MS.gene08299:CDS | 45.0% | |
| GAGATCATTAGAAGAGGTGG+AGG | + | chr4.3:17036308-17036327 | MS.gene08299:CDS | 45.0% | |
| GAGCTTCTGGTGGAAAAGAT+AGG | + | chr4.3:17036408-17036427 | MS.gene08299:CDS | 45.0% | |
| GCTCTTGATGAAGAAGATCC+TGG | - | chr4.3:17037133-17037152 | None:intergenic | 45.0% | |
| TCCCCCTATTATAACCAGCA+AGG | - | chr4.3:17037405-17037424 | None:intergenic | 45.0% | |
| TGACCCTCTTGGACTATTTG+TGG | - | chr4.3:17037014-17037033 | None:intergenic | 45.0% | |
| ! | GATGGTGTTGAATCTGGTGA+TGG | - | chr4.3:17037603-17037622 | None:intergenic | 45.0% |
| ! | GCCTTGCTGGTTATAATAGG+GGG | + | chr4.3:17037401-17037420 | MS.gene08299:CDS | 45.0% |
| ! | GGCCTTGCTGGTTATAATAG+GGG | + | chr4.3:17037400-17037419 | MS.gene08299:CDS | 45.0% |
| ! | GGGCCTTGCTGGTTATAATA+GGG | + | chr4.3:17037399-17037418 | MS.gene08299:CDS | 45.0% |
| !!! | CTACCTTTTTTCATGGGAGG+AGG | + | chr4.3:17037502-17037521 | MS.gene08299:CDS | 45.0% |
| !! | TTATTATTATTATTATTACT+AGG | - | chr4.3:17036635-17036654 | None:intergenic | 5.0% |
| ACCTTCAGCTGCTCCTACAA+TGG | + | chr4.3:17037558-17037577 | MS.gene08299:CDS | 50.0% | |
| AGGGTTTCAAGAGCTTCTGG+TGG | + | chr4.3:17036398-17036417 | MS.gene08299:CDS | 50.0% | |
| GACAACAGCAGCAGCAACAA+TGG | + | chr4.3:17037065-17037084 | MS.gene08299:CDS | 50.0% | |
| GAGACGGTGAATTGGACTGA+AGG | - | chr4.3:17037429-17037448 | None:intergenic | 50.0% | |
| GCACCTCCTCCCATGAAAAA+AGG | - | chr4.3:17037508-17037527 | None:intergenic | 50.0% | |
| TCCATTGTAGGAGCAGCTGA+AGG | - | chr4.3:17037562-17037581 | None:intergenic | 50.0% | |
| ! | CGGGCCTTGCTGGTTATAAT+AGG | + | chr4.3:17037398-17037417 | MS.gene08299:CDS | 50.0% |
| ACAATCTCTTCGGGCCTTGC+TGG | + | chr4.3:17037388-17037407 | MS.gene08299:CDS | 55.0% | |
| GCTGAAGGTGAAGCTGAAGC+AGG | - | chr4.3:17037547-17037566 | None:intergenic | 55.0% | |
| GGTTCTTCAGCTGACCCTCT+TGG | - | chr4.3:17037025-17037044 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 17036236 | 17037693 | 17036236 | ID=MS.gene08299 |
| chr4.3 | mRNA | 17036236 | 17037693 | 17036236 | ID=MS.gene08299.t1;Parent=MS.gene08299 |
| chr4.3 | exon | 17036236 | 17037693 | 17036236 | ID=MS.gene08299.t1.exon1;Parent=MS.gene08299.t1 |
| chr4.3 | CDS | 17036236 | 17037693 | 17036236 | ID=cds.MS.gene08299.t1;Parent=MS.gene08299.t1 |
| Gene Sequence |
| Protein sequence |
