Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08364.t1 | AFK41866.1 | 96.8 | 280 | 9 | 0 | 1 | 280 | 1 | 280 | 1.20E-156 | 562.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08364.t1 | Q9SKD0 | 54.2 | 297 | 105 | 10 | 1 | 280 | 1 | 283 | 7.8e-72 | 271.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08364.t1 | I3TAB3 | 96.8 | 280 | 9 | 0 | 1 | 280 | 1 | 280 | 8.6e-157 | 562.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08364.t1 | TF | BBR-BPC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08364.t1 | MTR_2g035730 | 69.919 | 123 | 8 | 2 | 27 | 149 | 1 | 94 | 2.58e-48 | 156 |
| MS.gene08364.t1 | MTR_1g023660 | 56.604 | 106 | 46 | 0 | 175 | 280 | 235 | 340 | 1.48e-42 | 149 |
| MS.gene08364.t1 | MTR_8g099780 | 53.846 | 104 | 48 | 0 | 177 | 280 | 209 | 312 | 1.97e-40 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08364.t1 | AT2G01930 | 54.882 | 297 | 103 | 10 | 1 | 280 | 1 | 283 | 4.27e-97 | 287 |
| MS.gene08364.t1 | AT2G01930 | 54.882 | 297 | 103 | 10 | 1 | 280 | 1 | 283 | 4.27e-97 | 287 |
| MS.gene08364.t1 | AT1G14685 | 51.678 | 298 | 107 | 11 | 1 | 280 | 1 | 279 | 7.41e-90 | 268 |
| MS.gene08364.t1 | AT1G14685 | 51.678 | 298 | 107 | 11 | 1 | 280 | 1 | 279 | 7.41e-90 | 268 |
| MS.gene08364.t1 | AT1G14685 | 51.678 | 298 | 107 | 11 | 1 | 280 | 1 | 279 | 7.41e-90 | 268 |
| MS.gene08364.t1 | AT1G14685 | 51.678 | 298 | 107 | 11 | 1 | 280 | 1 | 279 | 7.41e-90 | 268 |
| MS.gene08364.t1 | AT1G68120 | 47.079 | 291 | 121 | 9 | 1 | 280 | 1 | 269 | 1.31e-74 | 229 |
| MS.gene08364.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 60 | 226 | 6.87e-50 | 164 |
| MS.gene08364.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 60 | 226 | 6.87e-50 | 164 |
| MS.gene08364.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 60 | 226 | 6.87e-50 | 164 |
| MS.gene08364.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 105 | 271 | 1.15e-49 | 165 |
| MS.gene08364.t1 | AT5G42520 | 56.190 | 105 | 45 | 1 | 177 | 280 | 178 | 282 | 6.73e-40 | 140 |
| MS.gene08364.t1 | AT2G21240 | 53.846 | 104 | 48 | 0 | 177 | 280 | 193 | 296 | 9.34e-40 | 140 |
| MS.gene08364.t1 | AT2G21240 | 53.846 | 104 | 48 | 0 | 177 | 280 | 193 | 296 | 9.34e-40 | 140 |
| MS.gene08364.t1 | AT5G42520 | 56.190 | 105 | 45 | 1 | 177 | 280 | 234 | 338 | 1.54e-39 | 141 |
| MS.gene08364.t1 | AT5G42520 | 56.190 | 105 | 45 | 1 | 177 | 280 | 238 | 342 | 1.90e-39 | 140 |
| MS.gene08364.t1 | AT4G38910 | 51.485 | 101 | 49 | 0 | 180 | 280 | 158 | 258 | 2.75e-38 | 135 |
| MS.gene08364.t1 | AT4G38910 | 51.485 | 101 | 49 | 0 | 180 | 280 | 183 | 283 | 4.29e-38 | 135 |
Find 84 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGGCTTCCTGGGCTTCT+TGG | 0.176884 | 4.1:+17134153 | None:intergenic |
| GCTATCATCCTTCGGCTTCC+TGG | 0.179821 | 4.1:+17134144 | None:intergenic |
| TCTGGAAGAACAGCATAATT+TGG | 0.201472 | 4.1:+17134325 | None:intergenic |
| GGAATTGAAATGGACATTTC+TGG | 0.204966 | 4.1:-17134064 | MS.gene08364:CDS |
| TTCCTGGGCTTCTTGGCTTT+TGG | 0.290426 | 4.1:+17134160 | None:intergenic |
| GCCACGAGATTGTGCTGTTT+CGG | 0.312141 | 4.1:-17134428 | MS.gene08364:CDS |
| CTTTGCCGATGAGCATAAAA+AGG | 0.358237 | 4.1:-17133934 | MS.gene08364:CDS |
| AGCGAAGAAAAGGAAGTCTA+AGG | 0.361093 | 4.1:-17134197 | MS.gene08364:CDS |
| TTAACTATGTGAGGGATAAC+TGG | 0.365336 | 4.1:-17134390 | MS.gene08364:CDS |
| TTCTCATTTCTTGATGCATC+AGG | 0.374898 | 4.1:+17134265 | None:intergenic |
| TCCTCAGCAGTGTTATCGCT+GGG | 0.377723 | 4.1:-17134008 | MS.gene08364:CDS |
| GAGAGTGATTGTGATGCTTC+TGG | 0.377872 | 4.1:+17134307 | None:intergenic |
| GTTCCAGTTTGTTCTTGCAC+TGG | 0.379329 | 4.1:-17134034 | MS.gene08364:CDS |
| ATCACAATCACTCTCCTTGC+CGG | 0.381788 | 4.1:-17134299 | MS.gene08364:CDS |
| ATCGCTGGGGCGTTGGAGGC+TGG | 0.384018 | 4.1:-17133994 | MS.gene08364:CDS |
| TGAAATCAATGGAATTGAAA+TGG | 0.399496 | 4.1:-17134074 | MS.gene08364:CDS |
| AGGCGTGGTGCAAGGATAGC+TGG | 0.400781 | 4.1:-17133914 | MS.gene08364:CDS |
| TGTTATCGCTGGGGCGTTGG+AGG | 0.403737 | 4.1:-17133998 | MS.gene08364:CDS |
| GCATCAGGATGCGGTATAAC+CGG | 0.404299 | 4.1:+17134280 | None:intergenic |
| GCTATGATTGGAAGTGCAAA+TGG | 0.413501 | 4.1:-17134466 | MS.gene08364:CDS |
| CTATTGATCTGAAGACTCAT+TGG | 0.414033 | 4.1:-17133817 | MS.gene08364:CDS |
| CTATCATCCTTCGGCTTCCT+GGG | 0.424580 | 4.1:+17134145 | None:intergenic |
| CTCCCAGTGCAAGAACAAAC+TGG | 0.432478 | 4.1:+17134031 | None:intergenic |
| TCAAGTGCCAAAGTCTTCTT+CGG | 0.439736 | 4.1:+17134094 | None:intergenic |
| TTCCAGTTTGTTCTTGCACT+GGG | 0.441873 | 4.1:-17134033 | MS.gene08364:CDS |
| GTCCTCAGCAGTGTTATCGC+TGG | 0.449024 | 4.1:-17134009 | MS.gene08364:CDS |
| TATTGATAAACCTATGTCTC+GGG | 0.452192 | 4.1:+17134362 | None:intergenic |
| ATCTCGTGGCTGAAAGGGTA+GGG | 0.458243 | 4.1:+17134441 | None:intergenic |
| CAGTGTTATCGCTGGGGCGT+TGG | 0.461534 | 4.1:-17134001 | MS.gene08364:CDS |
| TCTGATAGTGACAAACTTGT+TGG | 0.463051 | 4.1:+17133781 | None:intergenic |
| GGGTTCATAGTAACCCCAAT+TGG | 0.466238 | 4.1:+17134573 | None:intergenic |
| TGAAGAATTGAGTGTTAAGA+AGG | 0.467743 | 4.1:-17134230 | MS.gene08364:CDS |
| ATGTGCTGAATATGCCCAAT+TGG | 0.468228 | 4.1:-17134588 | MS.gene08364:CDS |
| CTCCAAAAGCCAAGAAGCCC+AGG | 0.474778 | 4.1:-17134162 | MS.gene08364:CDS |
| GTTACTATGAACCCTTCAAA+GGG | 0.480237 | 4.1:-17134564 | MS.gene08364:CDS |
| AAGGTGGCAAAGCGAAGAAA+AGG | 0.482686 | 4.1:-17134207 | MS.gene08364:CDS |
| GGTCGTGATCCAGCTATGAT+TGG | 0.485066 | 4.1:-17134478 | MS.gene08364:CDS |
| AGGATAAATTGACACATTTG+TGG | 0.492724 | 4.1:+17133955 | None:intergenic |
| TTTGCACTTCCAATCATAGC+TGG | 0.492950 | 4.1:+17134469 | None:intergenic |
| GTGCAAGAACAAACTGGAAC+TGG | 0.493288 | 4.1:+17134037 | None:intergenic |
| AGCACAATCTCGTGGCTGAA+AGG | 0.495049 | 4.1:+17134435 | None:intergenic |
| TTATCCCTCACATAGTTAAA+CGG | 0.497017 | 4.1:+17134394 | None:intergenic |
| GGTTACTATGAACCCTTCAA+AGG | 0.497230 | 4.1:-17134565 | MS.gene08364:CDS |
| ACTTTGGCACTTGAAATCAA+TGG | 0.500357 | 4.1:-17134085 | MS.gene08364:CDS |
| CTGGGAGGAAAATGAGCAAA+GGG | 0.510464 | 4.1:-17133895 | MS.gene08364:CDS |
| GTTTCACGATCATTCATGGC+AGG | 0.511266 | 4.1:+17134517 | None:intergenic |
| GGTTCATAGTAACCCCAATT+GGG | 0.512276 | 4.1:+17134574 | None:intergenic |
| GAAACACTGCTATCATCCTT+CGG | 0.515134 | 4.1:+17134136 | None:intergenic |
| TGTGCTGAATATGCCCAATT+GGG | 0.516384 | 4.1:-17134587 | MS.gene08364:CDS |
| TATTGATCTGAAGACTCATT+GGG | 0.517362 | 4.1:-17133816 | MS.gene08364:CDS |
| TTTCTTGATGCATCAGGATG+CGG | 0.521747 | 4.1:+17134271 | None:intergenic |
| ATATTGATAAACCTATGTCT+CGG | 0.524517 | 4.1:+17134361 | None:intergenic |
| GAATTGAGTGTTAAGAAGGA+AGG | 0.526010 | 4.1:-17134226 | MS.gene08364:CDS |
| GGCGTGGTGCAAGGATAGCT+GGG | 0.537643 | 4.1:-17133913 | MS.gene08364:CDS |
| GCACAATCTCGTGGCTGAAA+GGG | 0.539826 | 4.1:+17134436 | None:intergenic |
| GAAACCACCGAAGAAGACTT+TGG | 0.547799 | 4.1:-17134101 | MS.gene08364:CDS |
| ACTGGATGACCCCGAGACAT+AGG | 0.551501 | 4.1:-17134372 | MS.gene08364:CDS |
| CAAGAAGCCCAGGAAGCCGA+AGG | 0.555978 | 4.1:-17134152 | MS.gene08364:CDS |
| AATCTCGTGGCTGAAAGGGT+AGG | 0.561235 | 4.1:+17134440 | None:intergenic |
| TTGAGTGTTAAGAAGGAAGG+TGG | 0.573084 | 4.1:-17134223 | MS.gene08364:CDS |
| TACTATGAACCCTTCAAAGG+GGG | 0.578585 | 4.1:-17134562 | MS.gene08364:CDS |
| CTATGATTGGAAGTGCAAAT+GGG | 0.579589 | 4.1:-17134465 | MS.gene08364:CDS |
| CTACTCCGTTTAACTATGTG+AGG | 0.583386 | 4.1:-17134399 | MS.gene08364:CDS |
| GCGAAGAAAAGGAAGTCTAA+GGG | 0.589646 | 4.1:-17134196 | MS.gene08364:CDS |
| AGTGCCAAAGTCTTCTTCGG+TGG | 0.589946 | 4.1:+17134097 | None:intergenic |
| ATCATAGCTGGATCACGACC+AGG | 0.593440 | 4.1:+17134481 | None:intergenic |
| GATAGCAGTGTTTCAGCTCA+AGG | 0.596315 | 4.1:-17134127 | MS.gene08364:CDS |
| ATTCAGCACATCATCATCCA+TGG | 0.603078 | 4.1:+17134600 | None:intergenic |
| AAGACTCATTGGGCTAGACA+TGG | 0.622877 | 4.1:-17133806 | MS.gene08364:CDS |
| TCTCGTGGCTGAAAGGGTAG+GGG | 0.624941 | 4.1:+17134442 | None:intergenic |
| TGCATCAAGAAATGAGAATG+TGG | 0.643643 | 4.1:-17134260 | MS.gene08364:CDS |
| TCCGAAACAGCACAATCTCG+TGG | 0.644189 | 4.1:+17134427 | None:intergenic |
| TACTCCGTTTAACTATGTGA+GGG | 0.653092 | 4.1:-17134398 | MS.gene08364:CDS |
| GCTGGGAGGAAAATGAGCAA+AGG | 0.653288 | 4.1:-17133896 | MS.gene08364:CDS |
| AGGATGCGGTATAACCGGCA+AGG | 0.654546 | 4.1:+17134285 | None:intergenic |
| GATCATTCATGGCAGGCATG+AGG | 0.655695 | 4.1:+17134524 | None:intergenic |
| CCCCAGCGATAACACTGCTG+AGG | 0.659707 | 4.1:+17134007 | None:intergenic |
| ATTGATAAACCTATGTCTCG+GGG | 0.666123 | 4.1:+17134363 | None:intergenic |
| ACTATGAACCCTTCAAAGGG+GGG | 0.673810 | 4.1:-17134561 | MS.gene08364:CDS |
| CCTCAGCAGTGTTATCGCTG+GGG | 0.675510 | 4.1:-17134007 | MS.gene08364:CDS |
| GTGCTGAATATGCCCAATTG+GGG | 0.693408 | 4.1:-17134586 | MS.gene08364:CDS |
| TTACTATGAACCCTTCAAAG+GGG | 0.698365 | 4.1:-17134563 | MS.gene08364:CDS |
| TGGGAGGAAAATGAGCAAAG+GGG | 0.723468 | 4.1:-17133894 | MS.gene08364:CDS |
| GTGGTGCAAGGATAGCTGGG+AGG | 0.770772 | 4.1:-17133910 | MS.gene08364:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATATTGATAAACCTATGTCT+CGG | + | chr4.1:17134018-17134037 | None:intergenic | 25.0% |
| ! | TGAAATCAATGGAATTGAAA+TGG | - | chr4.1:17134302-17134321 | MS.gene08364:CDS | 25.0% |
| AGGATAAATTGACACATTTG+TGG | + | chr4.1:17134424-17134443 | None:intergenic | 30.0% | |
| TATTGATAAACCTATGTCTC+GGG | + | chr4.1:17134017-17134036 | None:intergenic | 30.0% | |
| TATTGATCTGAAGACTCATT+GGG | - | chr4.1:17134560-17134579 | MS.gene08364:CDS | 30.0% | |
| TGAAGAATTGAGTGTTAAGA+AGG | - | chr4.1:17134146-17134165 | MS.gene08364:CDS | 30.0% | |
| TTATCCCTCACATAGTTAAA+CGG | + | chr4.1:17133985-17134004 | None:intergenic | 30.0% | |
| !! | TTTTGTTTCACGATCATTCA+TGG | + | chr4.1:17133866-17133885 | None:intergenic | 30.0% |
| !!! | GAAACAAAACCATTTTTTCC+TGG | - | chr4.1:17133877-17133896 | MS.gene08364:CDS | 30.0% |
| ACTTTGGCACTTGAAATCAA+TGG | - | chr4.1:17134291-17134310 | MS.gene08364:CDS | 35.0% | |
| ATTGATAAACCTATGTCTCG+GGG | + | chr4.1:17134016-17134035 | None:intergenic | 35.0% | |
| CTATTGATCTGAAGACTCAT+TGG | - | chr4.1:17134559-17134578 | MS.gene08364:CDS | 35.0% | |
| GAATTGAGTGTTAAGAAGGA+AGG | - | chr4.1:17134150-17134169 | MS.gene08364:CDS | 35.0% | |
| GGAATTGAAATGGACATTTC+TGG | - | chr4.1:17134312-17134331 | MS.gene08364:CDS | 35.0% | |
| GTTACTATGAACCCTTCAAA+GGG | - | chr4.1:17133812-17133831 | MS.gene08364:CDS | 35.0% | |
| TACTCCGTTTAACTATGTGA+GGG | - | chr4.1:17133978-17133997 | MS.gene08364:CDS | 35.0% | |
| TCTGGAAGAACAGCATAATT+TGG | + | chr4.1:17134054-17134073 | None:intergenic | 35.0% | |
| TGCATCAAGAAATGAGAATG+TGG | - | chr4.1:17134116-17134135 | MS.gene08364:CDS | 35.0% | |
| TTAACTATGTGAGGGATAAC+TGG | - | chr4.1:17133986-17134005 | MS.gene08364:CDS | 35.0% | |
| TTACTATGAACCCTTCAAAG+GGG | - | chr4.1:17133813-17133832 | MS.gene08364:CDS | 35.0% | |
| TTCTCATTTCTTGATGCATC+AGG | + | chr4.1:17134114-17134133 | None:intergenic | 35.0% | |
| ! | CTATGATTGGAAGTGCAAAT+GGG | - | chr4.1:17133911-17133930 | MS.gene08364:CDS | 35.0% |
| ! | TCTGATAGTGACAAACTTGT+TGG | + | chr4.1:17134598-17134617 | None:intergenic | 35.0% |
| AGCGAAGAAAAGGAAGTCTA+AGG | - | chr4.1:17134179-17134198 | MS.gene08364:CDS | 40.0% | |
| ATGTGCTGAATATGCCCAAT+TGG | - | chr4.1:17133788-17133807 | MS.gene08364:CDS | 40.0% | |
| CTACTCCGTTTAACTATGTG+AGG | - | chr4.1:17133977-17133996 | MS.gene08364:CDS | 40.0% | |
| CTTTGCCGATGAGCATAAAA+AGG | - | chr4.1:17134442-17134461 | MS.gene08364:CDS | 40.0% | |
| GAAACACTGCTATCATCCTT+CGG | + | chr4.1:17134243-17134262 | None:intergenic | 40.0% | |
| GCGAAGAAAAGGAAGTCTAA+GGG | - | chr4.1:17134180-17134199 | MS.gene08364:CDS | 40.0% | |
| GGTTACTATGAACCCTTCAA+AGG | - | chr4.1:17133811-17133830 | MS.gene08364:CDS | 40.0% | |
| GGTTCATAGTAACCCCAATT+GGG | + | chr4.1:17133805-17133824 | None:intergenic | 40.0% | |
| TACTATGAACCCTTCAAAGG+GGG | - | chr4.1:17133814-17133833 | MS.gene08364:CDS | 40.0% | |
| TCAAGTGCCAAAGTCTTCTT+CGG | + | chr4.1:17134285-17134304 | None:intergenic | 40.0% | |
| TGTGCTGAATATGCCCAATT+GGG | - | chr4.1:17133789-17133808 | MS.gene08364:CDS | 40.0% | |
| TTGAGTGTTAAGAAGGAAGG+TGG | - | chr4.1:17134153-17134172 | MS.gene08364:CDS | 40.0% | |
| TTTCTTGATGCATCAGGATG+CGG | + | chr4.1:17134108-17134127 | None:intergenic | 40.0% | |
| TTTGCACTTCCAATCATAGC+TGG | + | chr4.1:17133910-17133929 | None:intergenic | 40.0% | |
| ! | CTTTTTATGCTCATCGGCAA+AGG | + | chr4.1:17134444-17134463 | None:intergenic | 40.0% |
| ! | GCTATGATTGGAAGTGCAAA+TGG | - | chr4.1:17133910-17133929 | MS.gene08364:CDS | 40.0% |
| ! | TTCCAGTTTGTTCTTGCACT+GGG | - | chr4.1:17134343-17134362 | MS.gene08364:CDS | 40.0% |
| AAGGTGGCAAAGCGAAGAAA+AGG | - | chr4.1:17134169-17134188 | MS.gene08364:CDS | 45.0% | |
| ACTATGAACCCTTCAAAGGG+GGG | - | chr4.1:17133815-17133834 | MS.gene08364:CDS | 45.0% | |
| ATCACAATCACTCTCCTTGC+CGG | - | chr4.1:17134077-17134096 | MS.gene08364:CDS | 45.0% | |
| CTGGGAGGAAAATGAGCAAA+GGG | - | chr4.1:17134481-17134500 | MS.gene08364:CDS | 45.0% | |
| GAAACCACCGAAGAAGACTT+TGG | - | chr4.1:17134275-17134294 | MS.gene08364:CDS | 45.0% | |
| GAGAGTGATTGTGATGCTTC+TGG | + | chr4.1:17134072-17134091 | None:intergenic | 45.0% | |
| GATAGCAGTGTTTCAGCTCA+AGG | - | chr4.1:17134249-17134268 | MS.gene08364:CDS | 45.0% | |
| GGATCACGACCAGGAAAAAA+TGG | + | chr4.1:17133889-17133908 | None:intergenic | 45.0% | |
| GGGTTCATAGTAACCCCAAT+TGG | + | chr4.1:17133806-17133825 | None:intergenic | 45.0% | |
| GTGCAAGAACAAACTGGAAC+TGG | + | chr4.1:17134342-17134361 | None:intergenic | 45.0% | |
| GTGCTGAATATGCCCAATTG+GGG | - | chr4.1:17133790-17133809 | MS.gene08364:CDS | 45.0% | |
| GTTTCACGATCATTCATGGC+AGG | + | chr4.1:17133862-17133881 | None:intergenic | 45.0% | |
| TGGGAGGAAAATGAGCAAAG+GGG | - | chr4.1:17134482-17134501 | MS.gene08364:CDS | 45.0% | |
| ! | AAGACTCATTGGGCTAGACA+TGG | - | chr4.1:17134570-17134589 | MS.gene08364:CDS | 45.0% |
| ! | CCACGCCTTTTTATGCTCAT+CGG | + | chr4.1:17134450-17134469 | None:intergenic | 45.0% |
| ! | CTTCAGCAGCAAGTTTTTCC+AGG | + | chr4.1:17134521-17134540 | None:intergenic | 45.0% |
| ! | GTTCCAGTTTGTTCTTGCAC+TGG | - | chr4.1:17134342-17134361 | MS.gene08364:CDS | 45.0% |
| !! | CTGGAAAAACTTGCTGCTGA+AGG | - | chr4.1:17134519-17134538 | MS.gene08364:CDS | 45.0% |
| !! | GAGCAAAGGGGCTTTTAAGA+AGG | - | chr4.1:17134494-17134513 | MS.gene08364:CDS | 45.0% |
| AATCTCGTGGCTGAAAGGGT+AGG | + | chr4.1:17133939-17133958 | None:intergenic | 50.0% | |
| AGCACAATCTCGTGGCTGAA+AGG | + | chr4.1:17133944-17133963 | None:intergenic | 50.0% | |
| AGTGCCAAAGTCTTCTTCGG+TGG | + | chr4.1:17134282-17134301 | None:intergenic | 50.0% | |
| ATCATAGCTGGATCACGACC+AGG | + | chr4.1:17133898-17133917 | None:intergenic | 50.0% | |
| ATCTCGTGGCTGAAAGGGTA+GGG | + | chr4.1:17133938-17133957 | None:intergenic | 50.0% | |
| CCGATGAGCATAAAAAGGCG+TGG | - | chr4.1:17134447-17134466 | MS.gene08364:CDS | 50.0% | |
| CTATCATCCTTCGGCTTCCT+GGG | + | chr4.1:17134234-17134253 | None:intergenic | 50.0% | |
| CTCCCAGTGCAAGAACAAAC+TGG | + | chr4.1:17134348-17134367 | None:intergenic | 50.0% | |
| GATCATTCATGGCAGGCATG+AGG | + | chr4.1:17133855-17133874 | None:intergenic | 50.0% | |
| GCACAATCTCGTGGCTGAAA+GGG | + | chr4.1:17133943-17133962 | None:intergenic | 50.0% | |
| GCATCAGGATGCGGTATAAC+CGG | + | chr4.1:17134099-17134118 | None:intergenic | 50.0% | |
| GCTGGGAGGAAAATGAGCAA+AGG | - | chr4.1:17134480-17134499 | MS.gene08364:CDS | 50.0% | |
| GGTCGTGATCCAGCTATGAT+TGG | - | chr4.1:17133898-17133917 | MS.gene08364:CDS | 50.0% | |
| TCCGAAACAGCACAATCTCG+TGG | + | chr4.1:17133952-17133971 | None:intergenic | 50.0% | |
| TCCTCAGCAGTGTTATCGCT+GGG | - | chr4.1:17134368-17134387 | MS.gene08364:CDS | 50.0% | |
| ! | GCATAAAAAGGCGTGGTGCA+AGG | - | chr4.1:17134454-17134473 | MS.gene08364:CDS | 50.0% |
| !! | AGGGGCTTTTAAGAAGGTCC+TGG | - | chr4.1:17134500-17134519 | MS.gene08364:CDS | 50.0% |
| !! | GCCACGAGATTGTGCTGTTT+CGG | - | chr4.1:17133948-17133967 | MS.gene08364:CDS | 50.0% |
| !! | TTCCTGGGCTTCTTGGCTTT+TGG | + | chr4.1:17134219-17134238 | None:intergenic | 50.0% |
| ACCGAGATTCCCCCCTTTGA+AGG | + | chr4.1:17133827-17133846 | None:intergenic | 55.0% | |
| ACTGGATGACCCCGAGACAT+AGG | - | chr4.1:17134004-17134023 | MS.gene08364:CDS | 55.0% | |
| AGGATGCGGTATAACCGGCA+AGG | + | chr4.1:17134094-17134113 | None:intergenic | 55.0% | |
| CCCTTCAAAGGGGGGAATCT+CGG | - | chr4.1:17133823-17133842 | MS.gene08364:CDS | 55.0% | |
| CCGAGATTCCCCCCTTTGAA+GGG | + | chr4.1:17133826-17133845 | None:intergenic | 55.0% | |
| CCTCAGCAGTGTTATCGCTG+GGG | - | chr4.1:17134369-17134388 | MS.gene08364:CDS | 55.0% | |
| CTCCAAAAGCCAAGAAGCCC+AGG | - | chr4.1:17134214-17134233 | MS.gene08364:CDS | 55.0% | |
| GCTATCATCCTTCGGCTTCC+TGG | + | chr4.1:17134235-17134254 | None:intergenic | 55.0% | |
| GTCCTCAGCAGTGTTATCGC+TGG | - | chr4.1:17134367-17134386 | MS.gene08364:CDS | 55.0% | |
| TCTCGTGGCTGAAAGGGTAG+GGG | + | chr4.1:17133937-17133956 | None:intergenic | 55.0% | |
| !! | GGGCTTCTTGGCTTTTGGAG+TGG | + | chr4.1:17134214-17134233 | None:intergenic | 55.0% |
| AGGCGTGGTGCAAGGATAGC+TGG | - | chr4.1:17134462-17134481 | MS.gene08364:CDS | 60.0% | |
| CAAGAAGCCCAGGAAGCCGA+AGG | - | chr4.1:17134224-17134243 | MS.gene08364:CDS | 60.0% | |
| CAGTGTTATCGCTGGGGCGT+TGG | - | chr4.1:17134375-17134394 | MS.gene08364:CDS | 60.0% | |
| CCCCAGCGATAACACTGCTG+AGG | + | chr4.1:17134372-17134391 | None:intergenic | 60.0% | |
| CTTCGGCTTCCTGGGCTTCT+TGG | + | chr4.1:17134226-17134245 | None:intergenic | 60.0% | |
| GGCGTGGTGCAAGGATAGCT+GGG | - | chr4.1:17134463-17134482 | MS.gene08364:CDS | 60.0% | |
| GTGGTGCAAGGATAGCTGGG+AGG | - | chr4.1:17134466-17134485 | MS.gene08364:CDS | 60.0% | |
| !! | TGTTATCGCTGGGGCGTTGG+AGG | - | chr4.1:17134378-17134397 | MS.gene08364:CDS | 60.0% |
| !! | ATCGCTGGGGCGTTGGAGGC+TGG | - | chr4.1:17134382-17134401 | MS.gene08364:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 17133778 | 17134620 | 17133778 | ID=MS.gene08364 |
| chr4.1 | mRNA | 17133778 | 17134620 | 17133778 | ID=MS.gene08364.t1;Parent=MS.gene08364 |
| chr4.1 | exon | 17133778 | 17134620 | 17133778 | ID=MS.gene08364.t1.exon1;Parent=MS.gene08364.t1 |
| chr4.1 | CDS | 17133778 | 17134620 | 17133778 | ID=cds.MS.gene08364.t1;Parent=MS.gene08364.t1 |
| Gene Sequence |
| Protein sequence |
