AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08375

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08375.t1 MTR_5g027020 48.705 386 152 9 365 742 7 354 6.13e-119 362
MS.gene08375.t1 MTR_7g067010 53.614 332 151 3 18 349 1 329 8.65e-115 359
MS.gene08375.t1 MTR_3g462710 53.517 327 150 2 20 346 3 327 1.93e-111 350
MS.gene08375.t1 MTR_4g015080 52.424 330 154 3 17 346 10 336 3.35e-108 342
MS.gene08375.t1 MTR_7g098200 44.699 349 178 3 24 368 12 349 4.17e-98 316
MS.gene08375.t1 MTR_7g098150 42.980 349 184 3 24 368 16 353 2.20e-97 311
MS.gene08375.t1 MTR_7g098090 45.820 323 164 2 24 342 16 331 9.07e-97 313
MS.gene08375.t1 MTR_7g098180 43.056 360 186 4 13 367 6 351 9.82e-97 313
MS.gene08375.t1 MTR_7g098040 43.266 349 183 3 24 368 17 354 3.15e-95 309
MS.gene08375.t1 MTR_7g098160 43.266 349 183 3 24 368 16 353 3.38e-95 308
MS.gene08375.t1 MTR_7g098220 46.201 329 166 2 18 342 7 328 1.75e-94 306
MS.gene08375.t1 MTR_7g098200 43.840 349 171 5 24 368 12 339 3.62e-93 303
MS.gene08375.t1 MTR_7g098230 45.312 320 160 3 53 368 38 346 5.00e-87 286
MS.gene08375.t1 MTR_1g075440 43.155 336 177 4 12 342 1 327 4.95e-86 284
MS.gene08375.t1 MTR_1g041815 42.814 334 179 3 12 342 1 325 1.25e-83 278
MS.gene08375.t1 MTR_7g098220 47.751 289 140 2 58 342 3 284 1.04e-82 274
MS.gene08375.t1 MTR_1g042310 39.266 354 199 5 20 368 5 347 1.96e-82 274
MS.gene08375.t1 MTR_1g041835 42.216 334 181 3 12 342 1 325 1.98e-82 274
MS.gene08375.t1 MTR_3g112460 42.901 324 180 2 20 342 2 321 4.06e-82 273
MS.gene08375.t1 MTR_3g112470 42.593 324 181 2 20 342 2 321 9.54e-81 269
MS.gene08375.t1 MTR_3g072300 41.358 324 182 4 20 342 5 321 2.43e-78 263
MS.gene08375.t1 MTR_1g041875 37.017 362 213 4 10 368 1 350 6.03e-78 262
MS.gene08375.t1 MTR_1g042310 39.498 319 179 4 53 368 3 310 4.87e-73 248
MS.gene08375.t1 MTR_3g069500 41.231 325 185 3 18 342 12 330 5.94e-73 248
MS.gene08375.t1 MTR_3g112450 43.354 316 172 3 30 342 12 323 7.29e-73 248
MS.gene08375.t1 MTR_3g069420 41.772 316 178 3 27 342 20 329 1.27e-71 245
MS.gene08375.t1 MTR_1g042310 38.782 312 179 3 60 368 1 303 7.13e-71 242
MS.gene08375.t1 MTR_5g055000 40.308 325 190 3 23 346 1 322 9.09e-71 243
MS.gene08375.t1 MTR_7g065080 42.138 318 176 4 27 342 17 328 1.05e-68 237
MS.gene08375.t1 MTR_1g041885 39.103 312 178 3 60 368 1 303 1.05e-68 236
MS.gene08375.t1 MTR_7g088820 36.127 346 211 4 39 376 23 366 4.21e-67 233
MS.gene08375.t1 MTR_7g006540 36.873 339 202 4 13 342 34 369 2.98e-66 232
MS.gene08375.t1 MTR_4g019580 40.491 326 184 5 20 342 15 333 5.40e-66 230
MS.gene08375.t1 MTR_5g012270 40.895 313 182 2 33 342 21 333 1.07e-65 229
MS.gene08375.t1 MTR_3g069440 41.772 316 178 3 27 342 19 328 2.09e-64 226
MS.gene08375.t1 MTR_7g088825 37.662 308 190 2 37 342 18 325 1.12e-63 224
MS.gene08375.t1 MTR_7g005930 37.580 314 191 3 31 342 25 335 3.81e-63 222
MS.gene08375.t1 MTR_5g014150 38.323 334 202 2 13 342 16 349 1.18e-62 221
MS.gene08375.t1 MTR_3g462710 51.818 220 104 2 127 346 1 218 3.84e-62 216
MS.gene08375.t1 MTR_7g010820 37.462 331 201 3 16 342 1 329 9.61e-62 218
MS.gene08375.t1 MTR_7g088790 38.487 304 185 2 43 344 31 334 3.17e-61 217
MS.gene08375.t1 MTR_4g101380 41.325 317 178 5 33 342 19 334 2.99e-59 211
MS.gene08375.t1 MTR_5g012290 40.127 314 184 2 33 342 19 332 3.02e-59 211
MS.gene08375.t1 MTR_7g013270 36.709 316 193 4 31 342 80 392 1.96e-57 207
MS.gene08375.t1 MTR_4g098800 34.731 334 214 2 13 342 8 341 6.06e-57 205
MS.gene08375.t1 MTR_1g116930 37.676 284 174 3 60 342 42 323 1.34e-56 204
MS.gene08375.t1 MTR_7g088820 36.304 303 183 4 82 376 4 304 1.45e-56 202
MS.gene08375.t1 MTR_4g033395 38.079 302 169 5 27 326 18 303 1.60e-56 201
MS.gene08375.t1 MTR_4g098800 34.835 333 213 2 14 342 74 406 2.23e-56 204
MS.gene08375.t1 MTR_4g033375 36.025 322 180 5 27 338 18 323 1.50e-55 199
MS.gene08375.t1 MTR_8g469470 37.539 317 181 6 38 342 29 340 3.07e-55 200
MS.gene08375.t1 MTR_7g098200 41.463 246 129 3 127 368 1 235 5.17e-55 197
MS.gene08375.t1 MTR_3g005010 36.522 345 173 6 1 342 1 302 8.37e-55 198
MS.gene08375.t1 MTR_4g033325 36.474 329 173 7 20 342 10 308 9.92e-55 198
MS.gene08375.t1 MTR_4g033330 36.076 316 167 5 20 325 10 300 2.00e-54 196
MS.gene08375.t1 MTR_0294s0020 35.669 314 169 5 20 325 10 298 8.02e-53 192
MS.gene08375.t1 MTR_4g107530 33.731 335 204 5 13 342 16 337 9.49e-53 193
MS.gene08375.t1 MTR_4g033315 37.377 305 164 6 27 325 17 300 1.01e-52 192
MS.gene08375.t1 MTR_4g033310 37.377 305 164 6 27 325 17 300 1.01e-52 192
MS.gene08375.t1 MTR_8g087780 35.077 325 200 4 27 342 7 329 2.16e-52 192
MS.gene08375.t1 MTR_4g107510 35.314 303 189 4 45 342 40 340 6.24e-52 191
MS.gene08375.t1 MTR_5g085850 38.318 321 185 3 27 342 16 328 3.98e-51 188
MS.gene08375.t1 MTR_8g469480 34.528 307 190 4 45 342 42 346 4.79e-51 188
MS.gene08375.t1 MTR_3g014790 36.061 330 178 7 20 342 2 305 6.33e-51 187
MS.gene08375.t1 MTR_4g114340 38.788 330 191 4 17 342 1 323 6.51e-51 187
MS.gene08375.t1 MTR_4g107580 34.768 302 193 2 45 342 28 329 1.46e-50 187
MS.gene08375.t1 MTR_4g107610 35.897 312 188 6 40 344 30 336 5.08e-50 186
MS.gene08375.t1 MTR_5g038060 32.588 313 200 4 39 342 29 339 5.51e-50 186
MS.gene08375.t1 MTR_1g085090 30.890 382 240 10 26 402 2 364 9.03e-50 185
MS.gene08375.t1 MTR_3g100980 34.713 314 185 5 38 342 13 315 1.36e-49 184
MS.gene08375.t1 MTR_8g038880 38.835 309 164 5 41 342 20 310 3.09e-49 182
MS.gene08375.t1 MTR_2g017750 33.531 337 212 6 17 342 9 344 3.42e-49 183
MS.gene08375.t1 MTR_5g038190 32.070 343 205 6 9 342 7 330 2.44e-47 177
MS.gene08375.t1 MTR_7g065080 41.057 246 137 4 99 342 2 241 4.92e-46 172
MS.gene08375.t1 MTR_8g087810 33.642 324 207 3 27 342 7 330 7.00e-46 173
MS.gene08375.t1 MTR_7g111260 30.495 364 237 6 39 402 17 364 2.43e-45 172
MS.gene08375.t1 MTR_3g100980 31.361 338 192 5 38 342 13 343 3.17e-45 172
MS.gene08375.t1 MTR_7g064780 33.013 312 203 3 37 342 22 333 3.37e-45 171
MS.gene08375.t1 MTR_4g107670 36.293 259 157 2 20 274 3 257 3.64e-44 168
MS.gene08375.t1 MTR_7g088820 35.294 255 155 4 130 376 4 256 3.25e-43 164
MS.gene08375.t1 MTR_1g038390 63.636 132 38 3 573 703 4 126 9.49e-43 151
MS.gene08375.t1 MTR_1g009200 31.833 311 199 4 43 346 29 333 2.11e-42 163
MS.gene08375.t1 MTR_1g026740 32.248 307 192 4 43 342 19 316 2.15e-42 163
MS.gene08375.t1 MTR_7g064800 32.390 318 207 4 37 346 22 339 2.91e-42 163
MS.gene08375.t1 MTR_2g101590 33.121 314 194 7 39 344 24 329 2.95e-42 164
MS.gene08375.t1 MTR_2g101640 32.372 312 201 5 39 344 21 328 1.42e-41 161
MS.gene08375.t1 MTR_2g005130 31.464 321 197 5 27 342 26 328 2.19e-41 160
MS.gene08375.t1 MTR_2g101610 33.758 314 192 7 39 344 25 330 6.73e-41 159
MS.gene08375.t1 MTR_8g469310 33.007 306 192 4 28 332 13 306 2.37e-40 157
MS.gene08375.t1 MTR_5g038380 37.500 248 154 1 27 273 14 261 6.37e-40 156
MS.gene08375.t1 MTR_7g098210 33.754 317 124 9 60 368 1 239 1.13e-39 152
MS.gene08375.t1 MTR_4g123537 32.895 304 196 4 39 342 39 334 6.43e-39 153
MS.gene08375.t1 MTR_8g103233 33.544 316 187 7 38 342 14 317 1.37e-38 152
MS.gene08375.t1 MTR_4g033310 43.646 181 93 3 27 207 17 188 3.56e-38 149
MS.gene08375.t1 MTR_1g026750 30.794 315 200 6 36 342 13 317 1.50e-37 149
MS.gene08375.t1 MTR_2g101650 29.942 344 214 8 12 344 1 328 1.12e-36 146
MS.gene08375.t1 MTR_2g093640 31.875 320 195 6 35 342 15 323 2.50e-36 145
MS.gene08375.t1 MTR_1g026770 30.097 309 209 4 36 342 10 313 2.52e-36 145
MS.gene08375.t1 MTR_2g093160 29.032 341 225 5 35 367 15 346 1.35e-35 142
MS.gene08375.t1 MTR_4g011280 31.068 309 199 6 43 344 34 335 3.73e-35 142
MS.gene08375.t1 MTR_1g057460 29.904 311 195 9 39 342 42 336 7.08e-33 134
MS.gene08375.t1 MTR_2g093180 31.429 315 204 4 35 342 15 324 3.60e-32 132
MS.gene08375.t1 MTR_2g101560 30.032 313 205 6 39 344 25 330 1.27e-30 128
MS.gene08375.t1 MTR_4g033325 35.514 214 106 6 135 342 23 210 5.58e-29 121
MS.gene08375.t1 MTR_1g057460 31.727 249 151 7 99 342 31 265 1.11e-28 121
MS.gene08375.t1 MTR_0236s0050 29.032 279 179 7 69 342 1 265 1.16e-28 121
MS.gene08375.t1 MTR_4g024930 30.769 312 198 7 18 324 11 309 1.58e-28 121
MS.gene08375.t1 MTR_4g033325 35.149 202 104 5 147 342 4 184 7.67e-28 117
MS.gene08375.t1 MTR_7g052600 30.333 300 181 10 66 352 50 334 9.12e-27 115
MS.gene08375.t1 MTR_7g051830 32.692 208 132 3 66 273 50 249 1.02e-26 115
MS.gene08375.t1 MTR_4g033385 36.082 194 110 4 135 326 21 202 1.85e-26 114
MS.gene08375.t1 MTR_7g051880 33.493 209 129 4 66 272 50 250 1.17e-25 112
MS.gene08375.t1 MTR_1g009170 30.263 228 135 5 166 379 9 226 1.33e-22 101
MS.gene08375.t1 MTR_6g008690 29.508 244 149 3 47 276 13 247 1.83e-20 96.3
MS.gene08375.t1 MTR_3g073000 25.072 347 205 12 357 685 2 311 1.02e-17 87.4
MS.gene08375.t1 MTR_3g073000 24.773 331 199 10 357 673 2 296 1.52e-17 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08375.t1 AT2G02040 59.064 342 140 0 1 342 1 342 8.00e-143 432
MS.gene08375.t1 AT2G19640 52.696 408 154 10 362 747 7 397 1.75e-132 399
MS.gene08375.t1 AT1G62200 53.295 349 152 2 5 342 8 356 6.07e-123 381
MS.gene08375.t1 AT3G54140 53.963 328 148 2 20 346 3 328 3.07e-118 368
MS.gene08375.t1 AT3G54140 53.963 328 148 2 20 346 3 328 3.07e-118 368
MS.gene08375.t1 AT1G62200 49.471 378 151 3 5 342 22 399 5.81e-117 367
MS.gene08375.t1 AT1G62200 49.471 378 151 3 5 342 8 385 6.18e-117 366
MS.gene08375.t1 AT5G01180 50.920 326 158 2 17 342 1 324 7.48e-111 348
MS.gene08375.t1 AT5G01180 50.920 326 158 2 17 342 1 324 7.48e-111 348
MS.gene08375.t1 AT5G01180 50.920 326 158 2 17 342 1 324 7.48e-111 348
MS.gene08375.t1 AT2G19640 56.090 312 108 8 362 658 7 304 3.45e-107 331
MS.gene08375.t1 AT2G02020 48.980 343 137 2 1 342 1 306 2.31e-106 336
MS.gene08375.t1 AT2G02020 55.245 286 127 1 1 285 1 286 3.12e-105 332
MS.gene08375.t1 AT5G46040 41.304 322 179 2 24 342 10 324 2.46e-81 271
MS.gene08375.t1 AT2G37900 43.038 316 176 2 27 342 24 335 7.19e-77 259
MS.gene08375.t1 AT5G46050 40.994 322 180 2 24 342 10 324 3.91e-74 252
MS.gene08375.t1 AT3G53960 42.902 317 176 3 27 342 23 335 6.80e-74 252
MS.gene08375.t1 AT2G40460 37.283 346 201 5 23 367 6 336 6.58e-71 243
MS.gene08375.t1 AT3G54450 38.835 309 168 3 39 342 10 302 5.72e-65 226
MS.gene08375.t1 AT5G13400 37.117 326 193 4 26 342 48 370 1.03e-63 224
MS.gene08375.t1 AT1G68570 40.129 309 183 2 40 346 22 330 1.31e-63 223
MS.gene08375.t1 AT1G68570 40.753 292 171 2 57 346 9 300 1.01e-60 215
MS.gene08375.t1 AT1G12110 39.937 318 185 2 31 342 17 334 2.46e-60 214
MS.gene08375.t1 AT1G32450 36.202 337 208 3 13 342 9 345 1.72e-59 213
MS.gene08375.t1 AT2G26690 40.483 331 185 5 17 342 1 324 1.98e-59 211
MS.gene08375.t1 AT2G37900 43.629 259 142 2 84 342 2 256 5.38e-59 208
MS.gene08375.t1 AT4G21680 36.810 326 197 4 23 342 10 332 1.82e-57 206
MS.gene08375.t1 AT2G26690 41.356 295 162 4 53 342 3 291 1.39e-53 194
MS.gene08375.t1 AT5G19640 35.366 328 203 4 18 342 36 357 4.75e-53 194
MS.gene08375.t1 AT2G26690 41.549 284 155 4 64 342 2 279 1.21e-51 189
MS.gene08375.t1 AT1G59740 34.069 317 203 2 29 342 29 342 2.01e-51 189
MS.gene08375.t1 AT1G69870 35.783 313 189 5 38 342 48 356 2.09e-51 190
MS.gene08375.t1 AT1G22570 39.597 298 165 4 29 318 18 308 5.25e-51 187
MS.gene08375.t1 AT5G62680 34.653 303 191 3 45 342 47 347 6.24e-51 188
MS.gene08375.t1 AT1G18880 34.653 303 189 3 45 342 23 321 1.77e-49 184
MS.gene08375.t1 AT1G72125 36.393 305 177 5 29 329 17 308 1.41e-48 181
MS.gene08375.t1 AT3G47960 35.430 302 188 4 45 342 65 363 4.34e-48 181
MS.gene08375.t1 AT3G16180 33.123 317 193 6 39 344 21 329 5.05e-48 179
MS.gene08375.t1 AT1G69860 32.680 306 196 4 39 340 16 315 2.92e-47 177
MS.gene08375.t1 AT1G52190 33.861 316 189 6 39 342 19 326 6.10e-47 177
MS.gene08375.t1 AT3G21670 37.179 312 180 4 39 342 27 330 2.38e-46 175
MS.gene08375.t1 AT1G72140 32.540 378 211 9 13 369 9 363 4.07e-46 173
MS.gene08375.t1 AT1G22550 37.413 286 147 4 20 287 12 283 4.55e-46 174
MS.gene08375.t1 AT1G22570 39.636 275 151 4 52 318 4 271 1.24e-45 171
MS.gene08375.t1 AT5G28470 32.268 313 201 4 38 344 14 321 1.53e-45 172
MS.gene08375.t1 AT5G28470 32.268 313 201 4 38 344 14 321 1.70e-45 172
MS.gene08375.t1 AT1G72120 38.400 250 145 3 29 274 17 261 5.11e-45 170
MS.gene08375.t1 AT1G22540 38.672 256 149 3 29 280 18 269 8.66e-45 170
MS.gene08375.t1 AT3G45650 31.153 321 203 5 25 342 6 311 2.43e-43 166
MS.gene08375.t1 AT3G45650 31.153 321 203 5 25 342 6 311 2.96e-43 165
MS.gene08375.t1 AT1G27080 32.476 311 199 5 39 342 12 318 8.04e-42 161
MS.gene08375.t1 AT1G69850 35.769 260 167 0 17 276 1 260 1.29e-41 161
MS.gene08375.t1 AT1G72130 33.520 358 195 11 33 369 16 351 2.35e-41 159
MS.gene08375.t1 AT3G45660 32.484 314 194 5 32 342 33 331 2.46e-41 160
MS.gene08375.t1 AT3G45660 32.484 314 194 5 32 342 12 310 2.69e-41 159
MS.gene08375.t1 AT3G45660 32.484 314 194 5 32 342 12 310 2.69e-41 159
MS.gene08375.t1 AT5G62730 31.529 314 198 4 27 340 42 338 3.08e-41 160
MS.gene08375.t1 AT5G46050 39.269 219 123 2 127 342 1 212 1.34e-40 156
MS.gene08375.t1 AT3G25260 34.545 275 160 6 58 328 38 296 5.18e-40 155
MS.gene08375.t1 AT5G62730 36.481 233 134 2 47 278 3 222 7.16e-40 155
MS.gene08375.t1 AT3G45720 32.441 299 188 6 49 342 27 316 3.29e-39 153
MS.gene08375.t1 AT3G45690 30.164 305 197 6 41 342 18 309 4.63e-39 152
MS.gene08375.t1 AT1G33440 31.804 327 204 5 23 340 15 331 7.11e-38 150
MS.gene08375.t1 AT1G27040 33.462 260 170 1 17 273 3 262 1.27e-36 146
MS.gene08375.t1 AT1G27040 34.252 254 164 1 23 273 5 258 1.71e-36 145
MS.gene08375.t1 AT3G45680 28.267 329 215 7 22 342 3 318 2.83e-36 145
MS.gene08375.t1 AT3G45710 27.451 306 211 4 41 342 21 319 6.86e-35 140
MS.gene08375.t1 AT3G45700 28.197 305 200 5 43 342 18 308 8.32e-35 140
MS.gene08375.t1 AT1G27080 32.734 278 176 5 72 342 3 276 1.14e-34 139
MS.gene08375.t1 AT1G27040 37.443 219 134 1 58 273 12 230 1.37e-34 139
MS.gene08375.t1 AT3G25280 32.333 300 182 7 33 328 13 295 1.91e-34 139
MS.gene08375.t1 AT5G11570 32.911 237 147 6 27 258 2 231 1.10e-29 124
MS.gene08375.t1 AT5G14940 30.924 249 143 5 39 270 5 241 1.65e-27 118
MS.gene08375.t1 AT3G01350 29.344 259 150 5 39 276 5 251 8.41e-25 110
MS.gene08375.t1 AT1G72130 32.599 227 133 8 156 369 14 233 3.33e-20 94.4
MS.gene08375.t1 AT1G72130 32.599 227 133 8 156 369 14 233 3.33e-20 94.4
MS.gene08375.t1 AT2G38100 26.909 275 178 5 69 342 2 254 3.90e-20 95.1
MS.gene08375.t1 AT2G38100 26.909 275 178 5 69 342 18 270 1.00e-19 94.0
MS.gene08375.t1 AT2G38100 26.909 275 178 5 69 342 24 276 1.31e-19 93.6
MS.gene08375.t1 AT2G17900 26.557 305 182 13 368 663 18 289 4.51e-15 79.0

Find 155 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGATAAGCTTAATGCTTT+TGG 0.201202 4.1:-17335272 MS.gene08375:CDS
AGCCATGTATTTGGCCCTTT+GGG 0.248475 4.1:-17338352 MS.gene08375:CDS
GGAATTTGTGCATTGTTTAT+TGG 0.250960 4.1:-17338179 MS.gene08375:CDS
GTTGGGTGGGGCATTGGATA+TGG 0.267694 4.1:-17338200 MS.gene08375:CDS
CTTCTTTGCTGATGCTTACT+TGG 0.268524 4.1:-17338657 MS.gene08375:CDS
TGCTTTATTCAAGTGGAAAT+TGG 0.273427 4.1:-17338060 MS.gene08375:CDS
GGAGAATGAAGAAGAGGATA+TGG 0.278011 4.1:-17334892 MS.gene08375:CDS
AAATCATGCCCCTTTATTCT+AGG 0.280176 4.1:-17338917 MS.gene08375:intron
CTTTCTGTCAAAAGGGAAAC+TGG 0.280521 4.1:-17338947 MS.gene08375:CDS
GTGGAATAAAGCCATGTATT+TGG 0.281929 4.1:-17338361 MS.gene08375:CDS
CATATAATCACCTAGAATAA+AGG 0.295915 4.1:+17338907 None:intergenic
TGTGAACGTTTGGCGTACTA+TGG 0.297995 4.1:-17338797 MS.gene08375:CDS
AATAGGTCTGTTAGAGCTTA+TGG 0.303956 4.1:-17335218 MS.gene08375:CDS
TTTGCTGCTTCATCATTATC+AGG 0.305057 4.1:+17335380 None:intergenic
GTTTGATGATACAGATAATA+AGG 0.324766 4.1:-17338321 MS.gene08375:CDS
CTACACCATTTACTCTGTTC+TGG 0.336345 4.1:+17335990 None:intergenic
CAAAGAGGAGACAACTCTCT+TGG 0.341333 4.1:+17338030 None:intergenic
AAGCCATGTATTTGGCCCTT+TGG 0.344561 4.1:-17338353 MS.gene08375:CDS
GGAGGAGCAATGTGAAAATA+TGG 0.349748 4.1:-17334853 MS.gene08375:CDS
AAGAGATTGTTGGAAGACTA+TGG 0.351805 4.1:-17334990 MS.gene08375:CDS
TCAACCTACCAGATTACTTC+TGG 0.353923 4.1:-17339159 MS.gene08375:CDS
AACGAAAACAATTCATTATG+AGG 0.359381 4.1:+17335320 None:intergenic
TCTCTGAAACAGATGAAAAT+AGG 0.367730 4.1:-17335235 MS.gene08375:CDS
AGCCACCAGAACAGAGTAAA+TGG 0.369012 4.1:-17335995 MS.gene08375:CDS
TTGAATTGCAAAATCGATAT+CGG 0.369503 4.1:+17335597 None:intergenic
GAAGAAGAGTGATGAGAAAA+GGG 0.372337 4.1:+17335680 None:intergenic
CAAAGTGCCGTGTTCTTCCT+TGG 0.374151 4.1:-17338410 MS.gene08375:CDS
GAAAATGTTGGGTGGGGCAT+TGG 0.378461 4.1:-17338206 MS.gene08375:CDS
CATTGGCTTCAATGCAGAAA+TGG 0.379888 4.1:+17338472 None:intergenic
ATATAATCACCTAGAATAAA+GGG 0.393835 4.1:+17338908 None:intergenic
AGATGGATCGGTGAACATAA+AGG 0.403396 4.1:-17338975 MS.gene08375:CDS
GGAAGAAGAGTGATGAGAAA+AGG 0.403423 4.1:+17335679 None:intergenic
AGGGAGAGCTTTCTGTCAAA+AGG 0.405486 4.1:-17338955 MS.gene08375:CDS
TGCTATCTTACACCTCTCAT+TGG 0.406993 4.1:-17338683 MS.gene08375:CDS
GAAGCAAAAGAGGATTGCTT+TGG 0.410291 4.1:+17335510 None:intergenic
CGCTTGAAGTTGTCTTTCGA+GGG 0.412623 4.1:+17335481 None:intergenic
TAATCAAATCTACACGCATT+AGG 0.423534 4.1:+17335155 None:intergenic
ACCATCTTCCAGAAGTAATC+TGG 0.424218 4.1:+17339151 None:intergenic
GGCCTTTGAACTCTATAGAT+TGG 0.424233 4.1:+17338125 None:intergenic
GATGTAATGTTGAATCGAAT+TGG 0.426944 4.1:-17334947 MS.gene08375:CDS
GAAATTCAAGGTAGAGGAAG+AGG 0.427064 4.1:-17335779 MS.gene08375:CDS
TCTACCTTCAAAACAGAACT+TGG 0.428323 4.1:+17335803 None:intergenic
TAACAAAACTTGAAAATTTG+AGG 0.434129 4.1:+17335418 None:intergenic
AAAGAGGAGACAACTCTCTT+GGG 0.440258 4.1:+17338031 None:intergenic
ACTTGAATGTTGATGATAAA+GGG 0.440641 4.1:-17334659 MS.gene08375:CDS
ACCTGGAAAATTCTTGTAAG+AGG 0.444114 4.1:+17338092 None:intergenic
TTCTTTGCTGATGCTTACTT+GGG 0.456317 4.1:-17338656 MS.gene08375:CDS
GACTTGAATGTTGATGATAA+AGG 0.457168 4.1:-17334660 MS.gene08375:CDS
ATGCTTACTTGGGAAGATAC+TGG 0.462100 4.1:-17338646 MS.gene08375:CDS
TTAATGAAAACTATTCTAGT+AGG 0.465091 4.1:-17335016 MS.gene08375:CDS
TAGTCTAGAACTTCCTTCAA+TGG 0.467844 4.1:+17337986 None:intergenic
CAAGTAAGCATCAGCAAAGA+AGG 0.468338 4.1:+17338658 None:intergenic
GGGAGAGCTTTCTGTCAAAA+GGG 0.473627 4.1:-17338954 MS.gene08375:CDS
GATGGATCGGTGAACATAAA+GGG 0.475485 4.1:-17338974 MS.gene08375:CDS
GTATCACCTTGTGGCGGTAG+AGG 0.481772 4.1:+17334738 None:intergenic
TTTATTCAAGTGGAAATTGG+AGG 0.484701 4.1:-17338057 MS.gene08375:CDS
AACAAAACTTGAAAATTTGA+GGG 0.484733 4.1:+17335419 None:intergenic
AGACCAGCTGCGACATCATA+AGG 0.485177 4.1:+17335116 None:intergenic
TCTGGAAGATGGTCTTCTAC+AGG 0.486106 4.1:-17339141 MS.gene08375:intron
GCGCTTGAAGTTGTCTTTCG+AGG 0.489492 4.1:+17335480 None:intergenic
AAGAAGAGTGATGAGAAAAG+GGG 0.490229 4.1:+17335681 None:intergenic
AACAGAGTAAATGGTGTAGT+TGG 0.493172 4.1:-17335986 MS.gene08375:intron
GAGGCTTTGTACAGTTTCAC+AGG 0.495715 4.1:-17337532 MS.gene08375:intron
AGGGGTTGTTGAAGCAAAAG+AGG 0.497882 4.1:+17335500 None:intergenic
GCCCCAAAGGGCCAAATACA+TGG 0.498268 4.1:+17338350 None:intergenic
TAGAGCATAGTGATGATTTG+AGG 0.499010 4.1:-17337965 MS.gene08375:intron
TAGTAGGCAGAAGAGATTGT+TGG 0.499496 4.1:-17335000 MS.gene08375:CDS
TATCAGTCACAATATTGGTA+TGG 0.502249 4.1:-17338235 MS.gene08375:CDS
CCACCTTATGATGTCGCAGC+TGG 0.505662 4.1:-17335119 MS.gene08375:CDS
GTAGAGGAAATTCAAGGTAG+AGG 0.507246 4.1:-17335785 MS.gene08375:CDS
TTGAAGGTAGAGGAAATTCA+AGG 0.513971 4.1:-17335791 MS.gene08375:CDS
GTGAACGTTTGGCGTACTAT+GGG 0.515987 4.1:-17338796 MS.gene08375:CDS
TTTCTGCTGCTTTATTCAAG+TGG 0.517555 4.1:-17338067 MS.gene08375:CDS
GACAGTGTTCACACAGGAGA+TGG 0.518726 4.1:-17338992 MS.gene08375:CDS
GTGGTAGGGTAGAGAAGGAT+TGG 0.519774 4.1:+17335704 None:intergenic
GACTGAAGAAAATGTTGGGT+GGG 0.521178 4.1:-17338213 MS.gene08375:CDS
ATATCACTGCTGCTTTATCA+AGG 0.522330 4.1:+17337595 None:intergenic
GGCTATGGATGATGAGGAGG+AGG 0.523900 4.1:-17334871 MS.gene08375:CDS
AATTATTTCACTAGTAACAT+TGG 0.525384 4.1:-17338266 MS.gene08375:CDS
TCTGATAATGAGAGTGTTGA+AGG 0.527867 4.1:-17334924 MS.gene08375:CDS
CATTTCTGCATTGAAGCCAA+TGG 0.528020 4.1:-17338471 MS.gene08375:CDS
ATCTATAGAGTTCAAAGGCC+AGG 0.530439 4.1:-17338122 MS.gene08375:CDS
CCTCCATGGACTAGTCGCTT+CGG 0.530469 4.1:+17337551 None:intergenic
GCATCTCAACCTCTCAAAGC+TGG 0.531187 4.1:-17335749 MS.gene08375:CDS
ACAAAACTTGAAAATTTGAG+GGG 0.531312 4.1:+17335420 None:intergenic
TGAAGAAGAGGATATGGCTA+TGG 0.532611 4.1:-17334886 MS.gene08375:CDS
CACCATTTACTCTGTTCTGG+TGG 0.536799 4.1:+17335993 None:intergenic
TGTGTGATAGAACAAATTGC+TGG 0.536848 4.1:-17334773 MS.gene08375:CDS
GTATGGACTGAAGAAAATGT+TGG 0.539170 4.1:-17338218 MS.gene08375:CDS
ACCAGATTACTTCTGGAAGA+TGG 0.539804 4.1:-17339152 MS.gene08375:CDS
TGTGGAGGAGAATGAAGAAG+AGG 0.542011 4.1:-17334898 MS.gene08375:CDS
TCGTTATTGTCAGTTTCTGA+TGG 0.542245 4.1:+17334828 None:intergenic
AGAAGAGTGATGAGAAAAGG+GGG 0.544454 4.1:+17335682 None:intergenic
AATAAGGAAAGAGCAAGTAA+AGG 0.547198 4.1:-17338305 MS.gene08375:CDS
ATTAGGAATTCCTCCATTGA+AGG 0.547344 4.1:-17337999 MS.gene08375:CDS
ATCAAACTGATCTGCCCCAA+AGG 0.548905 4.1:+17338337 None:intergenic
TGGACAATTGCAGTGTTCTA+CGG 0.551075 4.1:-17338626 MS.gene08375:CDS
GGGACGAAATAATGTGGTGT+AGG 0.551782 4.1:+17335354 None:intergenic
CTTTGAGCTAAAGTTGCTGA+TGG 0.554378 4.1:+17338428 None:intergenic
GGATATGGCTATGGATGATG+AGG 0.556063 4.1:-17334877 MS.gene08375:CDS
TCAAACTGATCTGCCCCAAA+GGG 0.558866 4.1:+17338338 None:intergenic
ATAGCAAGTTCCTTGAAAAG+TGG 0.563384 4.1:+17338700 None:intergenic
TGATACATTATCTAATGTCA+TGG 0.566313 4.1:-17334721 MS.gene08375:CDS
ACAGAACACACACATTCCAT+TGG 0.567030 4.1:+17338455 None:intergenic
ACGCATTAGGAAGACAATCA+TGG 0.569579 4.1:+17335168 None:intergenic
GAAACTGTACAAAGCCTCCA+TGG 0.570140 4.1:+17337537 None:intergenic
TTAATTGCAGTAGGGACTGG+TGG 0.576604 4.1:-17338380 MS.gene08375:CDS
GTACCGAAGCGACTAGTCCA+TGG 0.578282 4.1:-17337554 MS.gene08375:CDS
ATAAAGCAGCAGAAATCACC+TGG 0.579238 4.1:+17338075 None:intergenic
TATGGCTATGGATGATGAGG+AGG 0.579991 4.1:-17334874 MS.gene08375:CDS
ACGAAAACAATTCATTATGA+GGG 0.582255 4.1:+17335321 None:intergenic
TGAGAGTGTTGAAGGAAATG+TGG 0.582356 4.1:-17334916 MS.gene08375:CDS
TTTCTGTCAAAAGGGAAACT+GGG 0.583377 4.1:-17338946 MS.gene08375:CDS
TCAAAAGGGAAACTGGGACA+TGG 0.584974 4.1:-17338940 MS.gene08375:CDS
CTTGTAAGAGGACTTCCACC+TGG 0.585711 4.1:+17338104 None:intergenic
TCATGATGTTCCTCAAGGTA+GGG 0.586762 4.1:-17335063 MS.gene08375:CDS
GTTGATGATAAAGGGCAAAG+TGG 0.587949 4.1:-17334651 MS.gene08375:CDS
ATGATTTGACCAGCTTTGAG+AGG 0.589051 4.1:+17335740 None:intergenic
TTTGAAGCAATGATCACAGA+AGG 0.589648 4.1:+17335658 None:intergenic
GCCATGTATTTGGCCCTTTG+GGG 0.596708 4.1:-17338351 MS.gene08375:CDS
ACTGAAGAAAATGTTGGGTG+GGG 0.597344 4.1:-17338212 MS.gene08375:CDS
CACCAATCTATAGAGTTCAA+AGG 0.597924 4.1:-17338127 MS.gene08375:CDS
GTGTGATAGAACAAATTGCT+GGG 0.601867 4.1:-17334772 MS.gene08375:CDS
CTCACCACGAAAATACATGA+AGG 0.610027 4.1:-17338749 MS.gene08375:CDS
TATGGACTGAAGAAAATGTT+GGG 0.612550 4.1:-17338217 MS.gene08375:CDS
ATGATTCATGATGTTCCTCA+AGG 0.621350 4.1:-17335068 MS.gene08375:CDS
TGGTGGCTGACGAGAAACTC+CGG 0.623085 4.1:+17336010 None:intergenic
TTCATGATGTTCCTCAAGGT+AGG 0.626469 4.1:-17335064 MS.gene08375:CDS
TCAACTCATCACATTCCACA+TGG 0.627136 4.1:-17335556 MS.gene08375:CDS
TCATGGAATGTAATGTCTGT+GGG 0.630100 4.1:-17334704 MS.gene08375:CDS
GGACTGAAGAAAATGTTGGG+TGG 0.631757 4.1:-17338214 MS.gene08375:CDS
TGTTCACACAGGAGATGGAT+CGG 0.633474 4.1:-17338987 MS.gene08375:CDS
TTAGATAATGTATCACCTTG+TGG 0.636379 4.1:+17334729 None:intergenic
GTCATGGAATGTAATGTCTG+TGG 0.637762 4.1:-17334705 MS.gene08375:CDS
AAACAAATCTCCCTACCTTG+AGG 0.638231 4.1:+17335053 None:intergenic
TCTTCCAGAAGTAATCTGGT+AGG 0.638301 4.1:+17339155 None:intergenic
TATAATCACCTAGAATAAAG+GGG 0.642276 4.1:+17338909 None:intergenic
TCTAGAACTTCCTTCAATGG+AGG 0.643161 4.1:+17337989 None:intergenic
GCAAAGTGGAGAAGTTCACA+TGG 0.648528 4.1:-17334637 MS.gene08375:CDS
GCTTGAAGTTGTCTTTCGAG+GGG 0.652672 4.1:+17335482 None:intergenic
TATAGAGTTCAAAGGCCAGG+TGG 0.663829 4.1:-17338119 MS.gene08375:CDS
GCAAAGAAGGATCCAATGAG+AGG 0.666530 4.1:+17338671 None:intergenic
GAGTGTTGAAGGAAATGTGG+AGG 0.667098 4.1:-17334913 MS.gene08375:CDS
CAACTCATCACATTCCACAT+GGG 0.668131 4.1:-17335555 MS.gene08375:CDS
CAAAACTTGAAAATTTGAGG+GGG 0.669304 4.1:+17335421 None:intergenic
AAATAGTCCAAGGAAGAACA+CGG 0.669921 4.1:+17338403 None:intergenic
TTAGCTCCTCTACCGCCACA+AGG 0.675162 4.1:-17334744 MS.gene08375:CDS
CCAGCTGCGACATCATAAGG+TGG 0.690744 4.1:+17335119 None:intergenic
TAATGCTTGACAAACCCATG+TGG 0.692539 4.1:+17335541 None:intergenic
GATAATGTATCACCTTGTGG+CGG 0.706475 4.1:+17334732 None:intergenic
TCTGAAGACAGTGTTCACAC+AGG 0.707974 4.1:-17338998 MS.gene08375:CDS
GAAGGATTGGTGAATCTGTG+AGG 0.720295 4.1:+17335717 None:intergenic
CCGAAGCGACTAGTCCATGG+AGG 0.742038 4.1:-17337551 MS.gene08375:CDS
TGTGATAGAACAAATTGCTG+GGG 0.747351 4.1:-17334771 MS.gene08375:CDS
AAGTGGAGAAGTTCACATGG+AGG 0.760776 4.1:-17334634 MS.gene08375:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGAAAAATCAATATCAA+TGG - chr4.1:17337971-17337990 MS.gene08375:CDS 15.0%
!!! AGTTTATTTCTAGTTTTTAT+TGG - chr4.1:17337352-17337371 MS.gene08375:intron 15.0%
!!! TTAATTTTGTATGATACATT+AGG + chr4.1:17337118-17337137 None:intergenic 15.0%
!! AACAAAACTTGAAAATTTGA+GGG + chr4.1:17338386-17338405 None:intergenic 20.0%
!! AATTATTTCACTAGTAACAT+TGG - chr4.1:17335536-17335555 MS.gene08375:CDS 20.0%
!! AATTTGAATAACAACAGTAA+TGG + chr4.1:17337907-17337926 None:intergenic 20.0%
!! ATATAATCACCTAGAATAAA+GGG + chr4.1:17334897-17334916 None:intergenic 20.0%
!! ATTAAGCAAACAATACTAAT+TGG + chr4.1:17335893-17335912 None:intergenic 20.0%
!! ATTTGAATAACAACAGTAAT+GGG + chr4.1:17337906-17337925 None:intergenic 20.0%
!! TAACAAAACTTGAAAATTTG+AGG + chr4.1:17338387-17338406 None:intergenic 20.0%
!! TAGAAATGAAAACTTTCTTA+AGG - chr4.1:17337146-17337165 MS.gene08375:intron 20.0%
!! TCACATATCTATTATAATAC+AGG - chr4.1:17334972-17334991 MS.gene08375:CDS 20.0%
!! TTAATGAAAACTATTCTAGT+AGG - chr4.1:17338786-17338805 MS.gene08375:CDS 20.0%
!!! AAGTTATATGTTCCTTTTTT+TGG - chr4.1:17337268-17337287 MS.gene08375:intron 20.0%
!!! ACAAAAATCTCCAAATATTT+TGG + chr4.1:17335928-17335947 None:intergenic 20.0%
!!! ACTTAGTTTTGTTAATATGT+TGG - chr4.1:17336957-17336976 MS.gene08375:intron 20.0%
!!! CAAAAATCTCCAAATATTTT+GGG + chr4.1:17335927-17335946 None:intergenic 20.0%
!!! CACTTTTAACAAATTCTTTA+GGG - chr4.1:17336809-17336828 MS.gene08375:intron 20.0%
!!! GAAAATTAAAAGTACCATTA+TGG + chr4.1:17335278-17335297 None:intergenic 20.0%
!!! GTAAAGGATCATTTTTTAAT+TGG - chr4.1:17335513-17335532 MS.gene08375:CDS 20.0%
!!! GTAATACTGATTTTGTTATT+AGG - chr4.1:17338711-17338730 MS.gene08375:CDS 20.0%
!!! TTTCTAGTTTTTATTGGTAT+TGG - chr4.1:17337358-17337377 MS.gene08375:intron 20.0%
!!! TTTTACATTATTGTTGACAA+AGG + chr4.1:17337674-17337693 None:intergenic 20.0%
! AACGAAAACAATTCATTATG+AGG + chr4.1:17338485-17338504 None:intergenic 25.0%
! AATACACATTCAGATACTAT+AGG + chr4.1:17335974-17335993 None:intergenic 25.0%
! ACAAAACTTGAAAATTTGAG+GGG + chr4.1:17338385-17338404 None:intergenic 25.0%
! ACAATCCCTTTATCATAAAT+TGG + chr4.1:17336487-17336506 None:intergenic 25.0%
! ACGAAAACAATTCATTATGA+GGG + chr4.1:17338484-17338503 None:intergenic 25.0%
! ATAAGAGATAATCTGAATGA+GGG - chr4.1:17336901-17336920 MS.gene08375:intron 25.0%
! ATAATATACTAAGTGGTACA+GGG + chr4.1:17336672-17336691 None:intergenic 25.0%
! ATACACATTCAGATACTATA+GGG + chr4.1:17335973-17335992 None:intergenic 25.0%
! CATATAATCACCTAGAATAA+AGG + chr4.1:17334898-17334917 None:intergenic 25.0%
! GCATTCTATTAGAAACAAAT+CGG - chr4.1:17337730-17337749 MS.gene08375:intron 25.0%
! GTATTGTATCCCAAAATATT+TGG - chr4.1:17335915-17335934 MS.gene08375:intron 25.0%
! GTCAATACACTAAAGATAAA+TGG + chr4.1:17337213-17337232 None:intergenic 25.0%
! TATAATCACCTAGAATAAAG+GGG + chr4.1:17334896-17334915 None:intergenic 25.0%
! TCAAAAAGAAATAAGCATGT+GGG + chr4.1:17339003-17339022 None:intergenic 25.0%
! TCTTAAAGATATATGTGTAG+AGG - chr4.1:17337476-17337495 MS.gene08375:intron 25.0%
! TGATACATTATCTAATGTCA+TGG - chr4.1:17339081-17339100 MS.gene08375:intron 25.0%
! TTCAAAAAGAAATAAGCATG+TGG + chr4.1:17339004-17339023 None:intergenic 25.0%
! TTGAATTGCAAAATCGATAT+CGG + chr4.1:17338208-17338227 None:intergenic 25.0%
! TTTCTAATAGAATGCAACAA+TGG + chr4.1:17337725-17337744 None:intergenic 25.0%
! TTTGAATAAACTAGGATTTC+AGG + chr4.1:17337870-17337889 None:intergenic 25.0%
!! AAAGATAAGCTTAATGCTTT+TGG - chr4.1:17338530-17338549 MS.gene08375:intron 25.0%
!! ACTTTTATCAGTCACAATAT+TGG - chr4.1:17335562-17335581 MS.gene08375:CDS 25.0%
!! CTAGAATAGTTTTCATTAAC+AGG + chr4.1:17338785-17338804 None:intergenic 25.0%
!! GCAATCATAATTTTCTTTCT+AGG - chr4.1:17335650-17335669 MS.gene08375:CDS 25.0%
!! GCACTTTTAACAAATTCTTT+AGG - chr4.1:17336808-17336827 MS.gene08375:intron 25.0%
!! GTTTGATGATACAGATAATA+AGG - chr4.1:17335481-17335500 MS.gene08375:CDS 25.0%
!! TATTGTTGACAAAGGTTTTA+GGG + chr4.1:17337666-17337685 None:intergenic 25.0%
!! TTATTGTTGACAAAGGTTTT+AGG + chr4.1:17337667-17337686 None:intergenic 25.0%
!!! ACTTGAATGTTGATGATAAA+GGG - chr4.1:17339143-17339162 MS.gene08375:CDS 25.0%
!!! ATGGTACTTTTAATTTTCAC+AGG - chr4.1:17335280-17335299 MS.gene08375:CDS 25.0%
!!! ATGTGTTTGATTTTGTCTTT+AGG + chr4.1:17337619-17337638 None:intergenic 25.0%
!!! CTTTGAAGTAGAATTCTTAT+AGG - chr4.1:17337065-17337084 MS.gene08375:intron 25.0%
!!! GACTATTTTTAATTGCAGTA+GGG - chr4.1:17335414-17335433 MS.gene08375:CDS 25.0%
!!! GGTTTCATTTTTATTCGTAT+TGG - chr4.1:17337313-17337332 MS.gene08375:intron 25.0%
!!! GTCATCTTGATTACTTTTTT+TGG - chr4.1:17336923-17336942 MS.gene08375:intron 25.0%
!!! TATGTTCCTTTTTTTGGTAT+CGG - chr4.1:17337274-17337293 MS.gene08375:intron 25.0%
!!! TGGTACTTTTAATTTTCACA+GGG - chr4.1:17335281-17335300 MS.gene08375:CDS 25.0%
!!! TGTGTTTGATTTTGTCTTTA+GGG + chr4.1:17337618-17337637 None:intergenic 25.0%
!!! TTGTTTTGAATTTGCTGTTT+AGG + chr4.1:17337542-17337561 None:intergenic 25.0%
AAAAAAGGGACGAAATAATG+TGG + chr4.1:17338457-17338476 None:intergenic 30.0%
AAATTCACTAACAAGGTAAG+AGG - chr4.1:17336520-17336539 MS.gene08375:intron 30.0%
AATAAGGAAAGAGCAAGTAA+AGG - chr4.1:17335497-17335516 MS.gene08375:CDS 30.0%
ACAACAAAAGATGGAAATTC+TGG - chr4.1:17336874-17336893 MS.gene08375:intron 30.0%
ACACTAAAGATAAATGGTAC+AGG + chr4.1:17337207-17337226 None:intergenic 30.0%
ACATCATAGCTGTCATTATT+TGG - chr4.1:17336458-17336477 MS.gene08375:intron 30.0%
ATACCTCAATATTTCTTGCT+TGG - chr4.1:17336697-17336716 MS.gene08375:intron 30.0%
ATAGAATGCAACAATGGTAA+AGG + chr4.1:17337719-17337738 None:intergenic 30.0%
ATCGGTACATAACATTTGAT+AGG - chr4.1:17337292-17337311 MS.gene08375:intron 30.0%
ATCTGCCATAATATACTAAG+TGG + chr4.1:17336679-17336698 None:intergenic 30.0%
CAAAACTTGAAAATTTGAGG+GGG + chr4.1:17338384-17338403 None:intergenic 30.0%
CATAATATACTAAGTGGTAC+AGG + chr4.1:17336673-17336692 None:intergenic 30.0%
CATCATAGCTGTCATTATTT+GGG - chr4.1:17336459-17336478 MS.gene08375:intron 30.0%
CATTATGATGTAGAGATGAT+AGG + chr4.1:17334698-17334717 None:intergenic 30.0%
CTATCATCTCTACATCATAA+TGG - chr4.1:17334696-17334715 MS.gene08375:CDS 30.0%
CTGCAATTAAAAATAGTCCA+AGG + chr4.1:17335412-17335431 None:intergenic 30.0%
CTGTACCACTTAGTATATTA+TGG - chr4.1:17336671-17336690 MS.gene08375:intron 30.0%
GAAATTACAAAAACATTCCC+AGG + chr4.1:17336108-17336127 None:intergenic 30.0%
GAATCTGATAGTATCCATAA+TGG - chr4.1:17335261-17335280 MS.gene08375:CDS 30.0%
GACTATGTTACAACAAAAGA+TGG - chr4.1:17336865-17336884 MS.gene08375:intron 30.0%
GATAAGAGATAATCTGAATG+AGG - chr4.1:17336900-17336919 MS.gene08375:intron 30.0%
GATGTAATGTTGAATCGAAT+TGG - chr4.1:17338855-17338874 MS.gene08375:intron 30.0%
GGAATTTGTGCATTGTTTAT+TGG - chr4.1:17335623-17335642 MS.gene08375:CDS 30.0%
GGGTTCCAATTTATGATAAA+GGG - chr4.1:17336479-17336498 MS.gene08375:intron 30.0%
GTATGCTGTTAGTAATTTCA+TGG + chr4.1:17336082-17336101 None:intergenic 30.0%
TAATCAAATCTACACGCATT+AGG + chr4.1:17338650-17338669 None:intergenic 30.0%
TAGACAGTACAAACAAAAGA+AGG - chr4.1:17336996-17337015 MS.gene08375:intron 30.0%
TATCAGTCACAATATTGGTA+TGG - chr4.1:17335567-17335586 MS.gene08375:CDS 30.0%
TATGGATACTATCAGATTCA+TGG + chr4.1:17335260-17335279 None:intergenic 30.0%
TGATGACATTTGTGCATAAA+CGG + chr4.1:17336359-17336378 None:intergenic 30.0%
TGGGTTCCAATTTATGATAA+AGG - chr4.1:17336478-17336497 MS.gene08375:intron 30.0%
TGTTGAACAAGGAAAAATGA+TGG - chr4.1:17336384-17336403 MS.gene08375:intron 30.0%
TTAGAACAACAAACAGATGA+TGG + chr4.1:17334923-17334942 None:intergenic 30.0%
TTAGATAATGTATCACCTTG+TGG + chr4.1:17339076-17339095 None:intergenic 30.0%
TTAGTGAATTTCCTTGCAAT+TGG + chr4.1:17336511-17336530 None:intergenic 30.0%
TTCTTAAGGCTATAACCAAA+TGG - chr4.1:17337160-17337179 MS.gene08375:intron 30.0%
TTTATTCAAGTGGAAATTGG+AGG - chr4.1:17335745-17335764 MS.gene08375:CDS 30.0%
! GTGTATTTTGTTAGTCAGTT+TGG - chr4.1:17335987-17336006 MS.gene08375:CDS 30.0%
! TACTTTCTTTTGTGAACGTT+TGG - chr4.1:17334995-17335014 MS.gene08375:CDS 30.0%
! TATGGACTGAAGAAAATGTT+GGG - chr4.1:17335585-17335604 MS.gene08375:CDS 30.0%
! TATGTACCGATACCAAAAAA+AGG + chr4.1:17337283-17337302 None:intergenic 30.0%
! TCATCACTATTTGTTGAACA+AGG - chr4.1:17336373-17336392 MS.gene08375:intron 30.0%
! TCCTCTTTGAAAAAGCAATT+AGG - chr4.1:17335786-17335805 MS.gene08375:CDS 30.0%
! TGCAAATAATGGAGAGAAAA+AGG + chr4.1:17336576-17336595 None:intergenic 30.0%
! TGCTTTATTCAAGTGGAAAT+TGG - chr4.1:17335742-17335761 MS.gene08375:CDS 30.0%
! TTTTCAGAATTGCAAAGGAT+GGG - chr4.1:17336544-17336563 MS.gene08375:intron 30.0%
! TTTTCATCTGTTTCAGAGAA+AGG + chr4.1:17338566-17338585 None:intergenic 30.0%
!! AAAAATGTCACCACTTTTCA+AGG - chr4.1:17335092-17335111 MS.gene08375:CDS 30.0%
!! ATTTTGTCTTTAGGGAATGA+TGG + chr4.1:17337610-17337629 None:intergenic 30.0%
!! CACTTTGAAATTGGGAAATA+AGG + chr4.1:17337401-17337420 None:intergenic 30.0%
!! GACTTGAATGTTGATGATAA+AGG - chr4.1:17339142-17339161 MS.gene08375:CDS 30.0%
!! GTGATGGATTTGTTGAATTA+GGG + chr4.1:17337697-17337716 None:intergenic 30.0%
!! TCTCTGAAACAGATGAAAAT+AGG - chr4.1:17338567-17338586 MS.gene08375:intron 30.0%
!! TTTTGTCTTTAGGGAATGAT+GGG + chr4.1:17337609-17337628 None:intergenic 30.0%
!!! AAAAGTGGTGACATTTTTTG+CGG + chr4.1:17335090-17335109 None:intergenic 30.0%
!!! CAAGTTTTGTTATCTCTACA+AGG - chr4.1:17338395-17338414 MS.gene08375:CDS 30.0%
!!! GGACTATTTTTAATTGCAGT+AGG - chr4.1:17335413-17335432 MS.gene08375:CDS 30.0%
!!! TAGAGGCATTTTCGATATTT+TGG - chr4.1:17337493-17337512 MS.gene08375:intron 30.0%
!!! TCCTAATTGCTTTTTCAAAG+AGG + chr4.1:17335790-17335809 None:intergenic 30.0%
AAATAGTCCAAGGAAGAACA+CGG + chr4.1:17335402-17335421 None:intergenic 35.0%
AAATCATGCCCCTTTATTCT+AGG - chr4.1:17334885-17334904 MS.gene08375:CDS 35.0%
AACAGAGTAAATGGTGTAGT+TGG - chr4.1:17337816-17337835 MS.gene08375:intron 35.0%
AACAGCGAAAGAATTTGGTT+TGG - chr4.1:17336633-17336652 MS.gene08375:intron 35.0%
AAGAAGAGTGATGAGAAAAG+GGG + chr4.1:17338124-17338143 None:intergenic 35.0%
AAGAGATTGTTGGAAGACTA+TGG - chr4.1:17338812-17338831 MS.gene08375:intron 35.0%
AATAGGTCTGTTAGAGCTTA+TGG - chr4.1:17338584-17338603 MS.gene08375:intron 35.0%
ACCTGGAAAATTCTTGTAAG+AGG + chr4.1:17335713-17335732 None:intergenic 35.0%
ACGAAAGAAACAGATATACC+AGG + chr4.1:17336014-17336033 None:intergenic 35.0%
ATAGCAAGTTCCTTGAAAAG+TGG + chr4.1:17335105-17335124 None:intergenic 35.0%
ATCACTTCAAAAAGTGGAAG+TGG + chr4.1:17337585-17337604 None:intergenic 35.0%
ATGATTCATGATGTTCCTCA+AGG - chr4.1:17338734-17338753 MS.gene08375:CDS 35.0%
ATTAGGAACTCTACACTTGA+GGG + chr4.1:17337101-17337120 None:intergenic 35.0%
ATTAGGAATTCCTCCATTGA+AGG - chr4.1:17335803-17335822 MS.gene08375:CDS 35.0%
CAAAAGATGGAAATTCTGGA+TGG - chr4.1:17336878-17336897 MS.gene08375:intron 35.0%
CACCAATCTATAGAGTTCAA+AGG - chr4.1:17335675-17335694 MS.gene08375:CDS 35.0%
CTTATTACTCTACTTTGTGC+AGG - chr4.1:17336182-17336201 MS.gene08375:intron 35.0%
GAAGAAGAGTGATGAGAAAA+GGG + chr4.1:17338125-17338144 None:intergenic 35.0%
GTAGAGATGATAGGTTAAGT+AGG + chr4.1:17334689-17334708 None:intergenic 35.0%
GTGGAATAAAGCCATGTATT+TGG - chr4.1:17335441-17335460 MS.gene08375:CDS 35.0%
GTGTGATAGAACAAATTGCT+GGG - chr4.1:17339030-17339049 MS.gene08375:intron 35.0%
TAGAGCATAGTGATGATTTG+AGG - chr4.1:17335837-17335856 MS.gene08375:intron 35.0%
TCATGGAATGTAATGTCTGT+GGG - chr4.1:17339098-17339117 MS.gene08375:intron 35.0%
TCGTTATTGTCAGTTTCTGA+TGG + chr4.1:17338977-17338996 None:intergenic 35.0%
TCTACCTTCAAAACAGAACT+TGG + chr4.1:17338002-17338021 None:intergenic 35.0%
TGCAAGGAAATTCACTAACA+AGG - chr4.1:17336513-17336532 MS.gene08375:intron 35.0%
TGTGATAGAACAAATTGCTG+GGG - chr4.1:17339031-17339050 MS.gene08375:intron 35.0%
TGTGTGATAGAACAAATTGC+TGG - chr4.1:17339029-17339048 MS.gene08375:intron 35.0%
TTCAAAAAGTGGAAGTGGAT+TGG + chr4.1:17337580-17337599 None:intergenic 35.0%
TTCTTTGCTGATGCTTACTT+GGG - chr4.1:17335146-17335165 MS.gene08375:CDS 35.0%
TTGAAGGTAGAGGAAATTCA+AGG - chr4.1:17338011-17338030 MS.gene08375:CDS 35.0%
TTGCAAACAGCGAAAGAATT+TGG - chr4.1:17336628-17336647 MS.gene08375:intron 35.0%
TTGTAATTTCGATGCACTCA+GGG - chr4.1:17336118-17336137 MS.gene08375:intron 35.0%
TTTCTGTCAAAAGGGAAACT+GGG - chr4.1:17334856-17334875 MS.gene08375:CDS 35.0%
TTTGTAATTTCGATGCACTC+AGG - chr4.1:17336117-17336136 MS.gene08375:intron 35.0%
! AACAGTAATGGGATGAAAAG+GGG + chr4.1:17337895-17337914 None:intergenic 35.0%
! ACAACAGTAATGGGATGAAA+AGG + chr4.1:17337897-17337916 None:intergenic 35.0%
! AGTTCCTTCATGTATTTTCG+TGG + chr4.1:17335060-17335079 None:intergenic 35.0%
! ATCTTTTCATAGTTAGCGAC+TGG - chr4.1:17337444-17337463 MS.gene08375:intron 35.0%
! ATTATGAGGGTGCGAAAAAA+GGG + chr4.1:17338471-17338490 None:intergenic 35.0%
! CAACAGTAATGGGATGAAAA+GGG + chr4.1:17337896-17337915 None:intergenic 35.0%
! CTTTTCAGAATTGCAAAGGA+TGG - chr4.1:17336543-17336562 MS.gene08375:intron 35.0%
! GGTATATCTGTTTCTTTCGT+TGG - chr4.1:17336014-17336033 MS.gene08375:intron 35.0%
! GTATGGACTGAAGAAAATGT+TGG - chr4.1:17335584-17335603 MS.gene08375:CDS 35.0%
! TAGTCTAGAACTTCCTTCAA+TGG + chr4.1:17335819-17335838 None:intergenic 35.0%
! TCAAAAAGTGGAAGTGGATT+GGG + chr4.1:17337579-17337598 None:intergenic 35.0%
! TCCTCTTACAAGAATTTTCC+AGG - chr4.1:17335709-17335728 MS.gene08375:CDS 35.0%
! TTTGAAGCAATGATCACAGA+AGG + chr4.1:17338147-17338166 None:intergenic 35.0%
! TTTGCTGCTTCATCATTATC+AGG + chr4.1:17338425-17338444 None:intergenic 35.0%
! TTTTAGTCCCTAAATGTGTG+AGG + chr4.1:17336159-17336178 None:intergenic 35.0%
!! AAGGGGTGTTTGAATAAACT+AGG + chr4.1:17337878-17337897 None:intergenic 35.0%
!! AGGCATTTTCGATATTTTGG+AGG - chr4.1:17337496-17337515 MS.gene08375:intron 35.0%
!! ATATCACTGCTGCTTTATCA+AGG + chr4.1:17336210-17336229 None:intergenic 35.0%
!! GGCATTTTCGATATTTTGGA+GGG - chr4.1:17337497-17337516 MS.gene08375:intron 35.0%
!! GGTGATGGATTTGTTGAATT+AGG + chr4.1:17337698-17337717 None:intergenic 35.0%
!! TCTGATAATGAGAGTGTTGA+AGG - chr4.1:17338878-17338897 MS.gene08375:intron 35.0%
!! TGGAGACTCACTTTGAAATT+GGG + chr4.1:17337409-17337428 None:intergenic 35.0%
!! TGTTCCAAGTTCTGTTTTGA+AGG - chr4.1:17337995-17338014 MS.gene08375:CDS 35.0%
!! TTGGAGACTCACTTTGAAAT+TGG + chr4.1:17337410-17337429 None:intergenic 35.0%
!! TTTCTGCTGCTTTATTCAAG+TGG - chr4.1:17335735-17335754 MS.gene08375:CDS 35.0%
!! TTTTTAATTGCAGTAGGGAC+TGG - chr4.1:17335419-17335438 MS.gene08375:CDS 35.0%
!!! AAGTTCTGTTTTGAAGGTAG+AGG - chr4.1:17338001-17338020 MS.gene08375:CDS 35.0%
!!! TACTTTTTTTGGCTTCTAGC+TGG - chr4.1:17336934-17336953 MS.gene08375:intron 35.0%
AAACAAATCTCCCTACCTTG+AGG + chr4.1:17338752-17338771 None:intergenic 40.0%
AAAGAGGAGACAACTCTCTT+GGG + chr4.1:17335774-17335793 None:intergenic 40.0%
AACTTGAAAATTTGAGGGGG+CGG + chr4.1:17338381-17338400 None:intergenic 40.0%
AAGATATGTTCCGATCAGCT+TGG + chr4.1:17337429-17337448 None:intergenic 40.0%
AAGGGATTGTTCCAATTGCA+AGG - chr4.1:17336497-17336516 MS.gene08375:intron 40.0%
ACAGAACACACACATTCCAT+TGG + chr4.1:17335350-17335369 None:intergenic 40.0%
ACCATCTTCCAGAAGTAATC+TGG + chr4.1:17334654-17334673 None:intergenic 40.0%
ACGCATTAGGAAGACAATCA+TGG + chr4.1:17338637-17338656 None:intergenic 40.0%
ACTGAAGAAAATGTTGGGTG+GGG - chr4.1:17335590-17335609 MS.gene08375:CDS 40.0%
AGAAGAGTGATGAGAAAAGG+GGG + chr4.1:17338123-17338142 None:intergenic 40.0%
AGATGGATCGGTGAACATAA+AGG - chr4.1:17334827-17334846 MS.gene08375:CDS 40.0%
AGCAGCTGACATGCAAATAA+TGG + chr4.1:17336587-17336606 None:intergenic 40.0%
AGGGTCTATGAGCAATGTAA+GGG - chr4.1:17337516-17337535 MS.gene08375:intron 40.0%
AGTTACAAACACTGCGCTTA+AGG + chr4.1:17337047-17337066 None:intergenic 40.0%
ATAAAGCAGCAGAAATCACC+TGG + chr4.1:17335730-17335749 None:intergenic 40.0%
ATCTATAGAGTTCAAAGGCC+AGG - chr4.1:17335680-17335699 MS.gene08375:CDS 40.0%
ATGCCCAGATTGGAAAAATG+CGG + chr4.1:17336318-17336337 None:intergenic 40.0%
ATGCTTACTTGGGAAGATAC+TGG - chr4.1:17335156-17335175 MS.gene08375:CDS 40.0%
ATGGGCATCACTTCAAAAAG+TGG + chr4.1:17337591-17337610 None:intergenic 40.0%
ATTATTCCTGATGCCCAGAT+TGG + chr4.1:17336328-17336347 None:intergenic 40.0%
CAACTCATCACATTCCACAT+GGG - chr4.1:17338247-17338266 MS.gene08375:CDS 40.0%
CAAGTAAGCATCAGCAAAGA+AGG + chr4.1:17335147-17335166 None:intergenic 40.0%
CATTAGGAACTCTACACTTG+AGG + chr4.1:17337102-17337121 None:intergenic 40.0%
CATTTCTGCATTGAAGCCAA+TGG - chr4.1:17335331-17335350 MS.gene08375:CDS 40.0%
CGAGTTAGTTGAGTTCAGTT+GGG + chr4.1:17337759-17337778 None:intergenic 40.0%
CTACACCATTTACTCTGTTC+TGG + chr4.1:17337815-17337834 None:intergenic 40.0%
CTCACCACGAAAATACATGA+AGG - chr4.1:17335053-17335072 MS.gene08375:CDS 40.0%
CTTCTTTGCTGATGCTTACT+TGG - chr4.1:17335145-17335164 MS.gene08375:CDS 40.0%
CTTTCTGTCAAAAGGGAAAC+TGG - chr4.1:17334855-17334874 MS.gene08375:CDS 40.0%
CTTTGAGCTAAAGTTGCTGA+TGG + chr4.1:17335377-17335396 None:intergenic 40.0%
GAAATTCAAGGTAGAGGAAG+AGG - chr4.1:17338023-17338042 MS.gene08375:CDS 40.0%
GAAGCAAAAGAGGATTGCTT+TGG + chr4.1:17338295-17338314 None:intergenic 40.0%
GAATTGCAAAGGATGGGAAT+TGG - chr4.1:17336550-17336569 MS.gene08375:intron 40.0%
GACTGAAGAAAATGTTGGGT+GGG - chr4.1:17335589-17335608 MS.gene08375:CDS 40.0%
GATAATGTATCACCTTGTGG+CGG + chr4.1:17339073-17339092 None:intergenic 40.0%
GATGGATCGGTGAACATAAA+GGG - chr4.1:17334828-17334847 MS.gene08375:CDS 40.0%
GCACCAAGCAAGAAATATTG+AGG + chr4.1:17336703-17336722 None:intergenic 40.0%
GGAAGAAGAGTGATGAGAAA+AGG + chr4.1:17338126-17338145 None:intergenic 40.0%
GGAGAATGAAGAAGAGGATA+TGG - chr4.1:17338910-17338929 MS.gene08375:intron 40.0%
GGAGGAGCAATGTGAAAATA+TGG - chr4.1:17338949-17338968 MS.gene08375:CDS 40.0%
GGCCTTTGAACTCTATAGAT+TGG + chr4.1:17335680-17335699 None:intergenic 40.0%
GTAGAGGAAATTCAAGGTAG+AGG - chr4.1:17338017-17338036 MS.gene08375:CDS 40.0%
GTCATGGAATGTAATGTCTG+TGG - chr4.1:17339097-17339116 MS.gene08375:intron 40.0%
TAATGCTTGACAAACCCATG+TGG + chr4.1:17338264-17338283 None:intergenic 40.0%
TACTAACAGCATACACACCT+GGG - chr4.1:17336088-17336107 MS.gene08375:intron 40.0%
TAGTAGGCAGAAGAGATTGT+TGG - chr4.1:17338802-17338821 MS.gene08375:CDS 40.0%
TCAACCTACCAGATTACTTC+TGG - chr4.1:17334643-17334662 MS.gene08375:CDS 40.0%
TCAACTCATCACATTCCACA+TGG - chr4.1:17338246-17338265 MS.gene08375:CDS 40.0%
TCATGATGTTCCTCAAGGTA+GGG - chr4.1:17338739-17338758 MS.gene08375:CDS 40.0%
TCTTCCAGAAGTAATCTGGT+AGG + chr4.1:17334650-17334669 None:intergenic 40.0%
TGAAGAAGAGGATATGGCTA+TGG - chr4.1:17338916-17338935 MS.gene08375:intron 40.0%
TGCAACAATGGTAAAGGTGA+TGG + chr4.1:17337713-17337732 None:intergenic 40.0%
TGCTATCTTACACCTCTCAT+TGG - chr4.1:17335119-17335138 MS.gene08375:CDS 40.0%
TGGACAATTGCAGTGTTCTA+CGG - chr4.1:17335176-17335195 MS.gene08375:CDS 40.0%
TGTAATTTCGATGCACTCAG+GGG - chr4.1:17336119-17336138 MS.gene08375:intron 40.0%
TGTTCACTGCAATCTCCATT+TGG + chr4.1:17337178-17337197 None:intergenic 40.0%
TTACTAACAGCATACACACC+TGG - chr4.1:17336087-17336106 MS.gene08375:intron 40.0%
TTCATGATGTTCCTCAAGGT+AGG - chr4.1:17338738-17338757 MS.gene08375:CDS 40.0%
TTTGTTAGTCAGTTTGGTCC+TGG - chr4.1:17335993-17336012 MS.gene08375:CDS 40.0%
! ACCAGATTACTTCTGGAAGA+TGG - chr4.1:17334650-17334669 MS.gene08375:CDS 40.0%
! ATCTGTTTCTTTCGTTGGTC+AGG - chr4.1:17336019-17336038 MS.gene08375:intron 40.0%
! ATTTTTCCAATCTGGGCATC+AGG - chr4.1:17336319-17336338 MS.gene08375:intron 40.0%
! CATTATGAGGGTGCGAAAAA+AGG + chr4.1:17338472-17338491 None:intergenic 40.0%
! GAGGCTTTTCAGAATTGCAA+AGG - chr4.1:17336539-17336558 MS.gene08375:intron 40.0%
! GATCCGCATTTTTCCAATCT+GGG - chr4.1:17336312-17336331 MS.gene08375:intron 40.0%
! GTTTTTCTATGAGCAATCGC+CGG - chr4.1:17336756-17336775 MS.gene08375:intron 40.0%
! TCTAGAACTTCCTTCAATGG+AGG + chr4.1:17335816-17335835 None:intergenic 40.0%
! TGATCCGCATTTTTCCAATC+TGG - chr4.1:17336311-17336330 MS.gene08375:intron 40.0%
!! ATGATTTGACCAGCTTTGAG+AGG + chr4.1:17338065-17338084 None:intergenic 40.0%
!! CATTGGCTTCAATGCAGAAA+TGG + chr4.1:17335333-17335352 None:intergenic 40.0%
!! GCTGAGGTATTCACTTTTGT+TGG - chr4.1:17336724-17336743 MS.gene08375:intron 40.0%
!! GTTGATGATAAAGGGCAAAG+TGG - chr4.1:17339151-17339170 MS.gene08375:CDS 40.0%
!! TGAGAGTGTTGAAGGAAATG+TGG - chr4.1:17338886-17338905 MS.gene08375:intron 40.0%
AAGCCATGTATTTGGCCCTT+TGG - chr4.1:17335449-17335468 MS.gene08375:CDS 45.0%
AAGTGAGTCTCCAAGCTGAT+CGG - chr4.1:17337416-17337435 MS.gene08375:intron 45.0%
AAGTGGAGAAGTTCACATGG+AGG - chr4.1:17339168-17339187 MS.gene08375:CDS 45.0%
AATGTTGAAAGAGACGCTGC+AGG + chr4.1:17336436-17336455 None:intergenic 45.0%
ACTGAACTCAACTAACTCGC+CGG - chr4.1:17337760-17337779 MS.gene08375:intron 45.0%
AGCCACCAGAACAGAGTAAA+TGG - chr4.1:17337807-17337826 MS.gene08375:intron 45.0%
AGCCATGTATTTGGCCCTTT+GGG - chr4.1:17335450-17335469 MS.gene08375:CDS 45.0%
AGGGAGAGCTTTCTGTCAAA+AGG - chr4.1:17334847-17334866 MS.gene08375:CDS 45.0%
AGGGGTTGTTGAAGCAAAAG+AGG + chr4.1:17338305-17338324 None:intergenic 45.0%
ATCAAACTGATCTGCCCCAA+AGG + chr4.1:17335468-17335487 None:intergenic 45.0%
CAAAGAGGAGACAACTCTCT+TGG + chr4.1:17335775-17335794 None:intergenic 45.0%
CACCATTTACTCTGTTCTGG+TGG + chr4.1:17337812-17337831 None:intergenic 45.0%
CGCTTGAAGTTGTCTTTCGA+GGG + chr4.1:17338324-17338343 None:intergenic 45.0%
CTGCAGTAGTAGAAACCAAG+AGG - chr4.1:17336605-17336624 MS.gene08375:intron 45.0%
GAAACTGTACAAAGCCTCCA+TGG + chr4.1:17336268-17336287 None:intergenic 45.0%
GAGGGTCTATGAGCAATGTA+AGG - chr4.1:17337515-17337534 MS.gene08375:intron 45.0%
GCAAAGAAGGATCCAATGAG+AGG + chr4.1:17335134-17335153 None:intergenic 45.0%
GCAAAGTGGAGAAGTTCACA+TGG - chr4.1:17339165-17339184 MS.gene08375:CDS 45.0%
GCGAGTTAGTTGAGTTCAGT+TGG + chr4.1:17337760-17337779 None:intergenic 45.0%
GCTTGAAGTTGTCTTTCGAG+GGG + chr4.1:17338323-17338342 None:intergenic 45.0%
GGACTGAAGAAAATGTTGGG+TGG - chr4.1:17335588-17335607 MS.gene08375:CDS 45.0%
GGATATGGCTATGGATGATG+AGG - chr4.1:17338925-17338944 MS.gene08375:CDS 45.0%
GGGACGAAATAATGTGGTGT+AGG + chr4.1:17338451-17338470 None:intergenic 45.0%
GGGAGAGCTTTCTGTCAAAA+GGG - chr4.1:17334848-17334867 MS.gene08375:CDS 45.0%
GTGAACGTTTGGCGTACTAT+GGG - chr4.1:17335006-17335025 MS.gene08375:CDS 45.0%
GTTTCTTTCGTTGGTCAGGT+TGG - chr4.1:17336023-17336042 MS.gene08375:intron 45.0%
TATAGAGTTCAAAGGCCAGG+TGG - chr4.1:17335683-17335702 MS.gene08375:CDS 45.0%
TATGGCTATGGATGATGAGG+AGG - chr4.1:17338928-17338947 MS.gene08375:CDS 45.0%
TCAAAAGGGAAACTGGGACA+TGG - chr4.1:17334862-17334881 MS.gene08375:CDS 45.0%
TCAAACTGATCTGCCCCAAA+GGG + chr4.1:17335467-17335486 None:intergenic 45.0%
TCTGAAGACAGTGTTCACAC+AGG - chr4.1:17334804-17334823 MS.gene08375:CDS 45.0%
TCTGGAAGATGGTCTTCTAC+AGG - chr4.1:17334661-17334680 MS.gene08375:CDS 45.0%
TGTGAACGTTTGGCGTACTA+TGG - chr4.1:17335005-17335024 MS.gene08375:CDS 45.0%
TGTGGAGGAGAATGAAGAAG+AGG - chr4.1:17338904-17338923 MS.gene08375:intron 45.0%
TGTTCACACAGGAGATGGAT+CGG - chr4.1:17334815-17334834 MS.gene08375:CDS 45.0%
TTAATTGCAGTAGGGACTGG+TGG - chr4.1:17335422-17335441 MS.gene08375:CDS 45.0%
TTTCGCTGTTTGCAACCTCT+TGG + chr4.1:17336623-17336642 None:intergenic 45.0%
! GAAGGATTGGTGAATCTGTG+AGG + chr4.1:17338088-17338107 None:intergenic 45.0%
! GAGGCTTTGTACAGTTTCAC+AGG - chr4.1:17336270-17336289 MS.gene08375:intron 45.0%
!! GAGTGTTGAAGGAAATGTGG+AGG - chr4.1:17338889-17338908 MS.gene08375:intron 45.0%
!!! AAAAATTGTATTTTTATTTT+TGG - chr4.1:17337946-17337965 MS.gene08375:intron 5.0%
!!! AAAATTGTATTTTTATTTTT+GGG - chr4.1:17337947-17337966 MS.gene08375:intron 5.0%
AGACCAGCTGCGACATCATA+AGG + chr4.1:17338689-17338708 None:intergenic 50.0%
AGAGTGATGAGAAAAGGGGG+TGG + chr4.1:17338120-17338139 None:intergenic 50.0%
CTGAACTCAACTAACTCGCC+GGG - chr4.1:17337761-17337780 MS.gene08375:intron 50.0%
CTTGTAAGAGGACTTCCACC+TGG + chr4.1:17335701-17335720 None:intergenic 50.0%
GAAAATGTTGGGTGGGGCAT+TGG - chr4.1:17335596-17335615 MS.gene08375:CDS 50.0%
GACAGTGTTCACACAGGAGA+TGG - chr4.1:17334810-17334829 MS.gene08375:CDS 50.0%
GACGCTGCCTCACACATTTA+GGG - chr4.1:17336149-17336168 MS.gene08375:intron 50.0%
GATGAGAAAAGGGGGTGGTA+GGG + chr4.1:17338115-17338134 None:intergenic 50.0%
GCATCTCAACCTCTCAAAGC+TGG - chr4.1:17338053-17338072 MS.gene08375:CDS 50.0%
GCCATGTATTTGGCCCTTTG+GGG - chr4.1:17335451-17335470 MS.gene08375:CDS 50.0%
GCGCTTGAAGTTGTCTTTCG+AGG + chr4.1:17338325-17338344 None:intergenic 50.0%
GTGGTAGGGTAGAGAAGGAT+TGG + chr4.1:17338101-17338120 None:intergenic 50.0%
TGACGCTGCCTCACACATTT+AGG - chr4.1:17336148-17336167 MS.gene08375:intron 50.0%
TGATGAGAAAAGGGGGTGGT+AGG + chr4.1:17338116-17338135 None:intergenic 50.0%
TTCTATGAGCAATCGCCGGA+TGG - chr4.1:17336760-17336779 MS.gene08375:intron 50.0%
!! CAAAGTGCCGTGTTCTTCCT+TGG - chr4.1:17335392-17335411 MS.gene08375:CDS 50.0%
!! TCGTTGGTCAGGTTGGTCTT+TGG - chr4.1:17336030-17336049 MS.gene08375:intron 50.0%
!! TTTCTTGCTTGGTGCTGCTG+AGG - chr4.1:17336708-17336727 MS.gene08375:intron 50.0%
CAGAAACTGCGCATGCCATC+CGG + chr4.1:17336778-17336797 None:intergenic 55.0%
CCACCTTATGATGTCGCAGC+TGG - chr4.1:17338683-17338702 MS.gene08375:CDS 55.0%
CCAGCTGCGACATCATAAGG+TGG + chr4.1:17338686-17338705 None:intergenic 55.0%
GCCCCAAAGGGCCAAATACA+TGG + chr4.1:17335455-17335474 None:intergenic 55.0%
GCGCAGTTTCTGCAGTGCAT+TGG - chr4.1:17336786-17336805 MS.gene08375:intron 55.0%
GGCTATGGATGATGAGGAGG+AGG - chr4.1:17338931-17338950 MS.gene08375:CDS 55.0%
GTATCACCTTGTGGCGGTAG+AGG + chr4.1:17339067-17339086 None:intergenic 55.0%
TGGTGGCTGACGAGAAACTC+CGG + chr4.1:17337795-17337814 None:intergenic 55.0%
TTAGCTCCTCTACCGCCACA+AGG - chr4.1:17339058-17339077 MS.gene08375:intron 55.0%
! GTACCGAAGCGACTAGTCCA+TGG - chr4.1:17336248-17336267 MS.gene08375:intron 55.0%
!! CCTCCATGGACTAGTCGCTT+CGG + chr4.1:17336254-17336273 None:intergenic 55.0%
!! GTTGGGTGGGGCATTGGATA+TGG - chr4.1:17335602-17335621 MS.gene08375:CDS 55.0%
AGGGGGTGGTAGGGTAGAGA+AGG + chr4.1:17338106-17338125 None:intergenic 60.0%
GAAACTCCGGCTGCGATTCC+CGG + chr4.1:17337782-17337801 None:intergenic 60.0%
! CCGAAGCGACTAGTCCATGG+AGG - chr4.1:17336251-17336270 MS.gene08375:intron 60.0%
AACTCGCCGGGAATCGCAGC+CGG - chr4.1:17337773-17337792 MS.gene08375:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 17334629 17339195 17334629 ID=MS.gene08375
chr4.1 mRNA 17334629 17339195 17334629 ID=MS.gene08375.t1;Parent=MS.gene08375
chr4.1 exon 17339142 17339195 17339142 ID=MS.gene08375.t1.exon1;Parent=MS.gene08375.t1
chr4.1 CDS 17339142 17339195 17339142 ID=cds.MS.gene08375.t1;Parent=MS.gene08375.t1
chr4.1 exon 17338918 17339020 17338918 ID=MS.gene08375.t1.exon2;Parent=MS.gene08375.t1
chr4.1 CDS 17338918 17339020 17338918 ID=cds.MS.gene08375.t1;Parent=MS.gene08375.t1
chr4.1 exon 17338613 17338830 17338613 ID=MS.gene08375.t1.exon3;Parent=MS.gene08375.t1
chr4.1 CDS 17338613 17338830 17338613 ID=cds.MS.gene08375.t1;Parent=MS.gene08375.t1
chr4.1 exon 17337966 17338522 17337966 ID=MS.gene08375.t1.exon4;Parent=MS.gene08375.t1
chr4.1 CDS 17337966 17338522 17337966 ID=cds.MS.gene08375.t1;Parent=MS.gene08375.t1
chr4.1 exon 17337533 17337620 17337533 ID=MS.gene08375.t1.exon5;Parent=MS.gene08375.t1
chr4.1 CDS 17337533 17337620 17337533 ID=cds.MS.gene08375.t1;Parent=MS.gene08375.t1
chr4.1 exon 17335987 17336032 17335987 ID=MS.gene08375.t1.exon6;Parent=MS.gene08375.t1
chr4.1 CDS 17335987 17336032 17335987 ID=cds.MS.gene08375.t1;Parent=MS.gene08375.t1
chr4.1 exon 17334629 17335848 17334629 ID=MS.gene08375.t1.exon7;Parent=MS.gene08375.t1
chr4.1 CDS 17334629 17335848 17334629 ID=cds.MS.gene08375.t1;Parent=MS.gene08375.t1
Gene Sequence

>MS.gene08375

ATGGAACATTTAGATCAACCTACCAGATTACTTCTGGAAGATGGTCTTCTACAGGTTCCTACTTAACCTATCATCTCTACATCATAATGGCATGCAACTTATTATAGTCTTCACACAAGTAGTAGCTAACTTGTAGTATTATCGTTATGCTGTTATTTATTTTTATTTTTTGCAGTCTGAAGACAGTGTTCACACAGGAGATGGATCGGTGAACATAAAGGGAGAGCTTTCTGTCAAAAGGGAAACTGGGACATGGAAATCATGCCCCTTTATTCTAGGTGATTATATGTTCCATCATCTGTTTGTTGTTCTAACAAACAATATTTTTCTTGTGTTTGACGCGTCACATATCTATTATAATACAGGTACTTTCTTTTGTGAACGTTTGGCGTACTATGGGATTGCTACAAATCTTGTCACTTATCTCACCACGAAAATACATGAAGGAACTGTTTCTGCCGCAAAAAATGTCACCACTTTTCAAGGAACTTGCTATCTTACACCTCTCATTGGATCCTTCTTTGCTGATGCTTACTTGGGAAGATACTGGACAATTGCAGTGTTCTACGGAATCTATCTCATTGTAAAATTTAAAATTATGATTTATGAGTTTCTCATCATGAAGTTACCATGAATCTGATAGTATCCATAATGGTACTTTTAATTTTCACAGGGTATCTGCATATTGATTCTTTCATCAACCATTTCTGCATTGAAGCCAATGGAATGTGTGTGTTCTGTCTGTCCATCAGCAACTTTAGCTCAAAGTGCCGTGTTCTTCCTTGGACTATTTTTAATTGCAGTAGGGACTGGTGGAATAAAGCCATGTATTTGGCCCTTTGGGGCAGATCAGTTTGATGATACAGATAATAAGGAAAGAGCAAGTAAAGGATCATTTTTTAATTGGAATTATTTCACTAGTAACATTGGTGCACTTTTATCAGTCACAATATTGGTATGGACTGAAGAAAATGTTGGGTGGGGCATTGGATATGGAATTTGTGCATTGTTTATTGGTATTGCAATCATAATTTTCTTTCTAGGTTCACCAATCTATAGAGTTCAAAGGCCAGGTGGAAGTCCTCTTACAAGAATTTTCCAGGTGATTTCTGCTGCTTTATTCAAGTGGAAATTGGAGGTTTCCCAAGAGAGTTGTCTCCTCTTTGAAAAAGCAATTAGGAATTCCTCCATTGAAGGAAGTTCTAGACTAGAGCATAGTGATGATTTGAGGTTATCTCATAGCTTCAAACATCTTTCATATCCAATTAGTATTGTTTGCTTAATATGTATTGTATCCCAAAATATTTGGAGATTTTTGTCATTGAATATGTAAGTCACTATCCCTATAGTATCTGAATGTGTATTTTGTTAGTCAGTTTGGTCCTGGTATATCTGTTTCTTTCGTTGGTCAGGTTGGTCTTTGGAAGTGTCTTTTGCTAGTCAGTTTGATCCATGAAATTACTAACAGCATACACACCTGGGAATGTTTTTGTAATTTCGATGCACTCAGGGGCTATAGTGACGCTGCCTCACACATTTAGGGACTAAAACAACTTATTACTCTACTTTGTGCAGGTTCCTTGATAAAGCAGCAGTGATATCAGATGCAGAAAAAGAGAGTACCGAAGCGACTAGTCCATGGAGGCTTTGTACAGTTTCACAGGTTGAAGAGTTAAAGATTTTGATCCGCATTTTTCCAATCTGGGCATCAGGAATAATCTTTTGTGCCGTTTATGCACAAATGTCATCACTATTTGTTGAACAAGGAAAAATGATGGACACAACTATTTCTTATTTGAAAATTCCTGCAGCGTCTCTTTCAACATTTAACATCATAGCTGTCATTATTTGGGTTCCAATTTATGATAAAGGGATTGTTCCAATTGCAAGGAAATTCACTAACAAGGTAAGAGGCTTTTCAGAATTGCAAAGGATGGGAATTGGCCTTTTTCTCTCCATTATTTGCATGTCAGCTGCTGCAGTAGTAGAAACCAAGAGGTTGCAAACAGCGAAAGAATTTGGTTTGGTCGACGAAAATGTCCCTGTACCACTTAGTATATTATGGCAGATACCTCAATATTTCTTGCTTGGTGCTGCTGAGGTATTCACTTTTGTTGGACAGCATGAGTTTTTCTATGAGCAATCGCCGGATGGCATGCGCAGTTTCTGCAGTGCATTGGCACTTTTAACAAATTCTTTAGGGAATTATTTAAGCTCTTTGATTGTCACTATTGTTGACTATGTTACAACAAAAGATGGAAATTCTGGATGGATAAGAGATAATCTGAATGAGGGTCATCTTGATTACTTTTTTTGGCTTCTAGCTGGACTTAGTTTTGTTAATATGTTGGTATACATTGTTTATGCTAGACAGTACAAACAAAAGAAGGCATGTCACATCACATGAGTCTTCTTCCTTAAGCGCAGTGTTTGTAACTTTGAAGTAGAATTCTTATAGGCATTATTTTTCCCTCAAGTGTAGAGTTCCTAATGTATCATACAAAATTAATACGTTAATAGAAATGAAAACTTTCTTAAGGCTATAACCAAATGGAGATTGCAGTGAACATTTCTTCCTGTACCATTTATCTTTAGTGTATTGACTTTTAAGTATGTAAATAGACTTCAGTGAAGCTATAAAGTTATATGTTCCTTTTTTTGGTATCGGTACATAACATTTGATAGGTTTCATTTTTATTCGTATTGGACGATATCTTCTTGTAAGTTTATTTCTAGTTTTTATTGGTATTGGACGATAGTTTCTGATAGCCTTATTTCCCAATTTCAAAGTGAGTCTCCAAGCTGATCGGAACATATCTTTTCATAGTTAGCGACTGGAAGATAACTTCTTAAAGATATATGTGTAGAGGCATTTTCGATATTTTGGAGGGTCTATGAGCAATGTAAGGGCCTAAACAGCAAATTCAAAACAAAAAACTAAGACAAACCCAATCCACTTCCACTTTTTGAAGTGATGCCCATCATTCCCTAAAGACAAAATCAAACACATTTTCATTTCAACAATTAAGCAAAACCCTAAAACCTTTGTCAACAATAATGTAAAACCCTAATTCAACAAATCCATCACCTTTACCATTGTTGCATTCTATTAGAAACAAATCGGAGTCCCAACTGAACTCAACTAACTCGCCGGGAATCGCAGCCGGAGTTTCTCGTCAGCCACCAGAACAGAGTAAATGGTGTAGTTGGTATGTTGTTGTATACTGTTTGTGTTCATCCTGAAATCCTAGTTTATTCAAACACCCCTTTTCATCCCATTACTGTTGTTATTCAAATTGATTCTATAGAAACTTCTTAAAAATTGTATTTTTATTTTTGGGTATTAGAAAAATCAATATCAATGGCTGTTCCAAGTTCTGTTTTGAAGGTAGAGGAAATTCAAGGTAGAGGAAGAGGAATTGTTGCATCTCAACCTCTCAAAGCTGGTCAAATCATCCTCACAGATTCACCAATCCTTCTCTACCCTACCACCCCCTTTTCTCATCACTCTTCTTCCTTCTGTGATCATTGCTTCAAATCTTTACATTCATCATTTGTTTCATGTTCTTCTTGCAACCGATATCGATTTTGCAATTCAACTTGTCTCTCAAAATCACTCAACTCATCACATTCCACATGGGTTTGTCAAGCATTATCTCAGCTCCAAAGCAATCCTCTTTTGCTTCAACAACCCCTCGAAAGACAACTTCAAGCGCGTTTTCTCATTGCTGCTTACAATCTTGCTAATACCGCCCCCTCAAATTTTCAAGTTTTGTTATCTCTACAAGGCTCTCCTGATAATGATGAAGCAGCAAACTTCCTACACCACATTATTTCGTCCCTTTTTTCGCACCCTCATAATGAATTGTTTTCGTTACAACTTACTTCTTCGCTGCTTGCTAAAGATAAGCTTAATGCTTTTGGATTAATGCATCCTTTCTCTGAAACAGATGAAAATAGGTCTGTTAGAGCTTATGGCATTTACCCTTATGCTTCGTTTTTCAACCATGATTGTCTTCCTAATGCGTGTAGATTTGATTATGTCGATGTTAATCCACCTTATGATGTCGCAGCTGGTCTTAGTAATACTGATTTTGTTATTAGGATGATTCATGATGTTCCTCAAGGTAGGGAGATTTGTTTGAGTTATTTTCCTGTTAATGAAAACTATTCTAGTAGGCAGAAGAGATTGTTGGAAGACTATGGTTTTGCGTGTAATTGTGATCGATGTAATGTTGAATCGAATTGGTCTGATAATGAGAGTGTTGAAGGAAATGTGGAGGAGAATGAAGAAGAGGATATGGCTATGGATGATGAGGAGGAGGAGCAATGTGAAAATATGGAACCATCAGAAACTGACAATAACGATTTCCCACATGCTTATTTCTTTTTGAAATACATGTGTGATAGAACAAATTGCTGGGGAACTTTAGCTCCTCTACCGCCACAAGGTGATACATTATCTAATGTCATGGAATGTAATGTCTGTGGGAAATTGAAGAGAGACGATGACGACTTGAATGTTGATGATAAAGGGCAAAGTGGAGAAGTTCACATGGAGGACTGA
Protein sequence

>MS.gene08375.t1

MEHLDQPTRLLLEDGLLQSEDSVHTGDGSVNIKGELSVKRETGTWKSCPFILGTFFCERLAYYGIATNLVTYLTTKIHEGTVSAAKNVTTFQGTCYLTPLIGSFFADAYLGRYWTIAVFYGIYLIGICILILSSTISALKPMECVCSVCPSATLAQSAVFFLGLFLIAVGTGGIKPCIWPFGADQFDDTDNKERASKGSFFNWNYFTSNIGALLSVTILVWTEENVGWGIGYGICALFIGIAIIIFFLGSPIYRVQRPGGSPLTRIFQVISAALFKWKLEVSQESCLLFEKAIRNSSIEGSSRLEHSDDLRFLDKAAVISDAEKESTEATSPWRLCTVSQPEFLVSHQNRVNGVVEKSISMAVPSSVLKVEEIQGRGRGIVASQPLKAGQIILTDSPILLYPTTPFSHHSSSFCDHCFKSLHSSFVSCSSCNRYRFCNSTCLSKSLNSSHSTWVCQALSQLQSNPLLLQQPLERQLQARFLIAAYNLANTAPSNFQVLLSLQGSPDNDEAANFLHHIISSLFSHPHNELFSLQLTSSLLAKDKLNAFGLMHPFSETDENRSVRAYGIYPYASFFNHDCLPNACRFDYVDVNPPYDVAAGLSNTDFVIRMIHDVPQGREICLSYFPVNENYSSRQKRLLEDYGFACNCDRCNVESNWSDNESVEGNVEENEEEDMAMDDEEEEQCENMEPSETDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGDTLSNVMECNVCGKLKRDDDDLNVDDKGQSGEVHMED