Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08389.t1 | RHN42288.1 | 94.6 | 680 | 36 | 1 | 1 | 680 | 93 | 771 | 0.00E+00 | 1112.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08389.t1 | Q9ZUM0 | 39.4 | 589 | 262 | 24 | 4 | 560 | 9 | 534 | 3.5e-78 | 294.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08389.t1 | A0A396GPF7 | 94.6 | 680 | 36 | 1 | 1 | 680 | 93 | 771 | 0.0e+00 | 1112.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08389.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08389.t1 | MTR_4g114040 | 59.836 | 122 | 31 | 2 | 25 | 146 | 7 | 110 | 1.92e-42 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08389.t1 | AT2G02160 | 39.968 | 628 | 283 | 28 | 3 | 597 | 5 | 571 | 8.51e-105 | 333 |
Find 190 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAGTCCTTCTTTCTATT+TGG | 0.122370 | 4.1:+17443703 | None:intergenic |
| ATTTGGGCTGATCCCTTTCT+AGG | 0.173898 | 4.1:+17443720 | None:intergenic |
| AGAATTTCACTAAGTGGTTT+TGG | 0.245906 | 4.1:+17443129 | None:intergenic |
| TATCATGGGGAAGATGAATT+TGG | 0.267482 | 4.1:-17443906 | MS.gene08389:CDS |
| GCTTGTTTACTACCATTATA+AGG | 0.280011 | 4.1:+17444440 | None:intergenic |
| TTTCTCAGAGAGTCGTCTCC+TGG | 0.281678 | 4.1:-17443972 | MS.gene08389:CDS |
| AGTCTTGCTGAACTTAAGTA+TGG | 0.284200 | 4.1:-17443246 | MS.gene08389:CDS |
| ATGAGTCCTTCTTTCTATTT+GGG | 0.297001 | 4.1:+17443704 | None:intergenic |
| TTCTCCCTTGACATGCAAAA+AGG | 0.299512 | 4.1:-17445808 | MS.gene08389:intron |
| TCCTCTTTCCAAATGATTGT+TGG | 0.310747 | 4.1:+17443202 | None:intergenic |
| TTGGAAAGAGGAAAAGCTTC+AGG | 0.319306 | 4.1:-17443191 | MS.gene08389:CDS |
| CAGCCTCTTGACGGGTTGTT+AGG | 0.337201 | 4.1:-17444548 | MS.gene08389:CDS |
| CAACACCTGCAACATTTGCT+TGG | 0.342566 | 4.1:+17444219 | None:intergenic |
| CCAAAAGGTTTCTTAAAACT+TGG | 0.344005 | 4.1:+17444278 | None:intergenic |
| AAGAACAACACCAATCTTCT+TGG | 0.345542 | 4.1:+17442768 | None:intergenic |
| ACCCATGCACCGCCTTATAA+TGG | 0.352929 | 4.1:-17444452 | MS.gene08389:CDS |
| GGAAGAAGAGTCCAAGATTC+AGG | 0.353435 | 4.1:-17442998 | MS.gene08389:CDS |
| GCCGTTTCCCTTCCTGCGCT+TGG | 0.358186 | 4.1:+17443626 | None:intergenic |
| TCGTATTCATTCAAAGAGTC+TGG | 0.359110 | 4.1:+17443855 | None:intergenic |
| AGAAATTCTGATTACTATCA+TGG | 0.361394 | 4.1:-17443921 | MS.gene08389:CDS |
| ATCTCTCATTTGAAGGTAAC+TGG | 0.376957 | 4.1:+17443541 | None:intergenic |
| ATCAGCGGCCGGTTGTCATC+TGG | 0.383165 | 4.1:-17443393 | MS.gene08389:CDS |
| TTACTGCCATTGGTAGGGTT+TGG | 0.386685 | 4.1:+17444350 | None:intergenic |
| AATAATGACCAACAATCATT+TGG | 0.389220 | 4.1:-17443210 | MS.gene08389:CDS |
| CGTCATTGTCCTTACCACTA+TGG | 0.395917 | 4.1:+17443997 | None:intergenic |
| ATCCTAGAGATTGTTGGTAT+TGG | 0.401206 | 4.1:-17444746 | MS.gene08389:CDS |
| TTTCTAGGTTCCCAGCCATA+TGG | 0.401770 | 4.1:+17443735 | None:intergenic |
| ATCATATGAGTCATAACCTT+GGG | 0.402504 | 4.1:+17443770 | None:intergenic |
| TCCATCAGCAGCCTGAATCT+TGG | 0.402576 | 4.1:+17442987 | None:intergenic |
| CTATGGAAATTGTGATCATC+TGG | 0.404436 | 4.1:+17444014 | None:intergenic |
| AAGTTTCTCCTCTCGTCATC+TGG | 0.405913 | 4.1:+17443315 | None:intergenic |
| CGATGAAGCTGCCGAAGATC+AGG | 0.408429 | 4.1:-17442911 | MS.gene08389:CDS |
| AAATCAAGAGCAAGAATATA+TGG | 0.412298 | 4.1:-17442815 | MS.gene08389:CDS |
| GTACATCATCTTCATATTGT+TGG | 0.423888 | 4.1:+17443163 | None:intergenic |
| GCAGCAGCAGCAGTTGCCGG+TGG | 0.424898 | 4.1:+17444521 | None:intergenic |
| TTGACGGATCTCTCATTTGA+AGG | 0.432104 | 4.1:+17443534 | None:intergenic |
| AGGATCCAGGATAGATTAAG+AGG | 0.436261 | 4.1:-17443345 | MS.gene08389:CDS |
| ACTTCCCAAGCAAATGTTGC+AGG | 0.436467 | 4.1:-17444224 | MS.gene08389:CDS |
| ACCTTCATACTCCTGATCTT+CGG | 0.437886 | 4.1:+17442900 | None:intergenic |
| GAAGATGATGTACCATTTGA+AGG | 0.438650 | 4.1:-17443153 | MS.gene08389:CDS |
| GAATCTGAAGTTGTGGCTGT+TGG | 0.444668 | 4.1:+17445904 | None:intergenic |
| ACCTTCCTCTTAATCTATCC+TGG | 0.445108 | 4.1:+17443340 | None:intergenic |
| AACACCTGCAACATTTGCTT+GGG | 0.445165 | 4.1:+17444220 | None:intergenic |
| TCCTTCAGAATTTCACTAAG+TGG | 0.448374 | 4.1:+17443123 | None:intergenic |
| AGGTGACTGTCACCACCATT+TGG | 0.450256 | 4.1:+17443480 | None:intergenic |
| GAAATTCTGATTACTATCAT+GGG | 0.451701 | 4.1:-17443920 | MS.gene08389:CDS |
| GTCCCTCTCTAGGTGACTGC+TGG | 0.452700 | 4.1:+17443431 | None:intergenic |
| ACACGATTAGACCGGGCATT+AGG | 0.453044 | 4.1:+17444053 | None:intergenic |
| GATTGTTGGTATTGGTTGAA+TGG | 0.456384 | 4.1:-17444738 | MS.gene08389:CDS |
| ATCTGTGGCGTGGGGACAGA+TGG | 0.457178 | 4.1:+17444491 | None:intergenic |
| ATATGGCTGGGAACCTAGAA+AGG | 0.461958 | 4.1:-17443733 | MS.gene08389:CDS |
| CGGATGACGGAATGAACACT+TGG | 0.466296 | 4.1:+17444701 | None:intergenic |
| CTCAAGATGAAGCCTTGAAA+AGG | 0.468804 | 4.1:-17445857 | MS.gene08389:CDS |
| AATATATGGAAGATGAAGAT+GGG | 0.468862 | 4.1:-17442801 | MS.gene08389:CDS |
| AACTTGGATTCTCAGCTCCT+TGG | 0.469416 | 4.1:+17444294 | None:intergenic |
| AATCTGAAGTTGTGGCTGTT+GGG | 0.469633 | 4.1:+17445905 | None:intergenic |
| TGACTCTAGCATACTCACTA+TGG | 0.470886 | 4.1:+17444769 | None:intergenic |
| TCTGAGACCTCAACACTGTC+AGG | 0.480290 | 4.1:+17443666 | None:intergenic |
| GCATTAGGCCCATTGGTTGG+CGG | 0.480720 | 4.1:+17444068 | None:intergenic |
| AGAATAAATCTTCCACCAAA+TGG | 0.481461 | 4.1:-17443495 | MS.gene08389:CDS |
| AATGAAGGAATTACCGAAAA+CGG | 0.483376 | 4.1:-17443039 | MS.gene08389:CDS |
| CATGTACCGCCACCACCTGC+AGG | 0.483658 | 4.1:-17444134 | MS.gene08389:CDS |
| GATGACTTTGCCAAGAAGAT+TGG | 0.484215 | 4.1:-17442778 | MS.gene08389:CDS |
| GCCTCATGAGGGAAGGATCC+AGG | 0.484648 | 4.1:-17443358 | MS.gene08389:CDS |
| TACCATTATAAGGCGGTGCA+TGG | 0.485504 | 4.1:+17444450 | None:intergenic |
| CAACCAATGGGCCTAATGCC+CGG | 0.485721 | 4.1:-17444064 | MS.gene08389:CDS |
| TTAGGCCCATTGGTTGGCGG+TGG | 0.486496 | 4.1:+17444071 | None:intergenic |
| TTCTCAGAGAGTCGTCTCCT+GGG | 0.488365 | 4.1:-17443971 | MS.gene08389:CDS |
| GAAATTCTGAAGGAGAAGAA+AGG | 0.491627 | 4.1:-17443114 | MS.gene08389:CDS |
| TCCAAGCGCAGGAAGGGAAA+CGG | 0.492405 | 4.1:-17443627 | MS.gene08389:CDS |
| GAATATATGGAAGATGAAGA+TGG | 0.492589 | 4.1:-17442802 | MS.gene08389:CDS |
| GCCTCGGAAACGATTATTGA+CGG | 0.493252 | 4.1:+17443518 | None:intergenic |
| CAAGTGTTCATTCCGTCATC+CGG | 0.493411 | 4.1:-17444700 | MS.gene08389:intron |
| TTTACATGCAGCCTCTTGAC+GGG | 0.494749 | 4.1:-17444556 | MS.gene08389:intron |
| GTCATCATGTTTGCTACTGT+GGG | 0.496484 | 4.1:+17443068 | None:intergenic |
| TGGATTCTCAGCTCCTTGGT+TGG | 0.496891 | 4.1:+17444298 | None:intergenic |
| TGGTAGGGTTTGGTCCATGC+AGG | 0.497954 | 4.1:+17444360 | None:intergenic |
| TCCAAGATTCAGGCTGCTGA+TGG | 0.498699 | 4.1:-17442988 | MS.gene08389:CDS |
| GAAGCCTTCCAGATGACAAC+CGG | 0.499100 | 4.1:+17443385 | None:intergenic |
| AAGGCTTCATCTTGAGGAGA+AGG | 0.502963 | 4.1:+17445864 | None:intergenic |
| TTATCTAACCCTGCAGGTGG+TGG | 0.503622 | 4.1:+17444125 | None:intergenic |
| TCATCTTGAGGAGAAGGTGT+TGG | 0.504643 | 4.1:+17445870 | None:intergenic |
| TGGAAAGAGGAAAAGCTTCA+GGG | 0.504669 | 4.1:-17443190 | MS.gene08389:CDS |
| CTGAAGGAGAAGAAAGGAGT+TGG | 0.505461 | 4.1:-17443108 | MS.gene08389:CDS |
| GTATGAGTATGAACAAGTTG+AGG | 0.507239 | 4.1:-17442842 | MS.gene08389:CDS |
| AGTTCTCCACCGCCAACCAA+TGG | 0.509937 | 4.1:-17444077 | MS.gene08389:CDS |
| TCTTTGAATGAATACGATGT+AGG | 0.510886 | 4.1:-17443849 | MS.gene08389:CDS |
| AAAGGAGTTGGAGCTGGTGC+AGG | 0.510993 | 4.1:-17443096 | MS.gene08389:CDS |
| GTTCTCCACCGCCAACCAAT+GGG | 0.511996 | 4.1:-17444076 | MS.gene08389:CDS |
| CATGATGACAATAAGAATGA+AGG | 0.513449 | 4.1:-17443054 | MS.gene08389:CDS |
| AGACCGGGCATTAGGCCCAT+TGG | 0.518925 | 4.1:+17444061 | None:intergenic |
| ACCAACAATCATTTGGAAAG+AGG | 0.519008 | 4.1:-17443203 | MS.gene08389:CDS |
| TGTCATCATGTTTGCTACTG+TGG | 0.520700 | 4.1:+17443067 | None:intergenic |
| TCTAACCCTGCAGGTGGTGG+CGG | 0.521071 | 4.1:+17444128 | None:intergenic |
| CTTTGAATGAATACGATGTA+GGG | 0.521877 | 4.1:-17443848 | MS.gene08389:CDS |
| CGGAACATTGTCAGAGAGCA+AGG | 0.523049 | 4.1:-17443019 | MS.gene08389:CDS |
| GATCACATGCAAGAGCCATA+TGG | 0.523697 | 4.1:-17443750 | MS.gene08389:CDS |
| GAGTCAATCCTAGAGATTGT+TGG | 0.524919 | 4.1:-17444752 | MS.gene08389:CDS |
| TATGAGTATGAACAAGTTGA+GGG | 0.525313 | 4.1:-17442841 | MS.gene08389:CDS |
| GTTGCCGCAATCTGTGGCGT+GGG | 0.527866 | 4.1:+17444482 | None:intergenic |
| ACATGCAAGAGCCATATGGC+TGG | 0.534478 | 4.1:-17443746 | MS.gene08389:CDS |
| GCCTCATTATCTAACCCTGC+AGG | 0.535034 | 4.1:+17444119 | None:intergenic |
| GTGGAAGATTTATTCTGCCT+CGG | 0.535587 | 4.1:+17443502 | None:intergenic |
| ACCTGCAGGGTTAGATAATG+AGG | 0.535845 | 4.1:-17444120 | MS.gene08389:CDS |
| GAGAAGAAAGGAGTTGGAGC+TGG | 0.544404 | 4.1:-17443102 | MS.gene08389:CDS |
| CTCTGTCCAAGTCCCTCTCT+AGG | 0.544981 | 4.1:+17443421 | None:intergenic |
| CGTTTATCCAAGCGCAGGAA+GGG | 0.547030 | 4.1:-17443633 | MS.gene08389:CDS |
| ACCATTATAAGGCGGTGCAT+GGG | 0.548023 | 4.1:+17444451 | None:intergenic |
| GATGATCACAATTTCCATAG+TGG | 0.554285 | 4.1:-17444011 | MS.gene08389:CDS |
| TGGCAGTAAAATAGCTACAC+AGG | 0.556312 | 4.1:-17444336 | MS.gene08389:CDS |
| AGCAAGAAAGTAGACACAAT+CGG | 0.559051 | 4.1:+17445830 | None:intergenic |
| GATCGAATGAGGACCGAAGT+GGG | 0.559665 | 4.1:-17443284 | MS.gene08389:CDS |
| TCCAGGATAGATTAAGAGGA+AGG | 0.562641 | 4.1:-17443341 | MS.gene08389:CDS |
| CGGGCATTAGGCCCATTGGT+TGG | 0.564557 | 4.1:+17444065 | None:intergenic |
| CTCTGTCTAAGTCCCTCTCT+AGG | 0.564616 | 4.1:+17443460 | None:intergenic |
| TCCTGGATCCTTCCCTCATG+AGG | 0.568928 | 4.1:+17443357 | None:intergenic |
| GAACCAGCAGTCACCTAGAG+AGG | 0.569215 | 4.1:-17443434 | MS.gene08389:CDS |
| TGTCCCCACGCCACAGATTG+CGG | 0.569632 | 4.1:-17444486 | MS.gene08389:CDS |
| TGACTGTCACCACCATTTGG+TGG | 0.569677 | 4.1:+17443483 | None:intergenic |
| CGTATTCATTCAAAGAGTCT+GGG | 0.569875 | 4.1:+17443856 | None:intergenic |
| GACAGATGTGCCTTCCTGCA+TGG | 0.570126 | 4.1:-17444374 | MS.gene08389:CDS |
| TTGAAAGAAAATGCAAGGCA+CGG | 0.577753 | 4.1:+17444418 | None:intergenic |
| CTTCAGCAGTCGATCGAATG+AGG | 0.577765 | 4.1:-17443295 | MS.gene08389:CDS |
| TGTTGCCGCAATCTGTGGCG+TGG | 0.581148 | 4.1:+17444481 | None:intergenic |
| GCAGATGTTGCCGCAATCTG+TGG | 0.582954 | 4.1:+17444476 | None:intergenic |
| TCGTTTATCCAAGCGCAGGA+AGG | 0.583309 | 4.1:-17443634 | MS.gene08389:CDS |
| GATCAGCCCAAATAGAAAGA+AGG | 0.583430 | 4.1:-17443710 | MS.gene08389:CDS |
| GATGAATTTGGTAAAACAAG+AGG | 0.583764 | 4.1:-17443894 | MS.gene08389:CDS |
| TCACAATTTCCATAGTGGTA+AGG | 0.586818 | 4.1:-17444006 | MS.gene08389:CDS |
| TTGTGGCTGTTGGGCAACCA+TGG | 0.587839 | 4.1:+17445914 | None:intergenic |
| TCGTAGTCCTGACAGTGTTG+AGG | 0.587874 | 4.1:-17443673 | MS.gene08389:CDS |
| GTTGATGCACACGATTAGAC+CGG | 0.589529 | 4.1:+17444045 | None:intergenic |
| TTCAATCGCCTCATGAGGGA+AGG | 0.590666 | 4.1:-17443365 | MS.gene08389:CDS |
| GATCATATGAGTCATAACCT+TGG | 0.590754 | 4.1:+17443769 | None:intergenic |
| CAGTCACCTAGAGAGGGACT+TGG | 0.591478 | 4.1:-17443427 | MS.gene08389:CDS |
| AAGGCTTCAATCGCCTCATG+AGG | 0.592807 | 4.1:-17443370 | MS.gene08389:CDS |
| ATCTGTCGTCGCTCATGATG+AGG | 0.592954 | 4.1:-17443598 | MS.gene08389:CDS |
| ACCACTTAGTGAAATTCTGA+AGG | 0.593072 | 4.1:-17443124 | MS.gene08389:CDS |
| AACCAATACCAACAATCTCT+AGG | 0.593370 | 4.1:+17444744 | None:intergenic |
| CGATCGAATGAGGACCGAAG+TGG | 0.593485 | 4.1:-17443285 | MS.gene08389:CDS |
| GACATCGTTTATCCAAGCGC+AGG | 0.594290 | 4.1:-17443638 | MS.gene08389:CDS |
| GTCTTGCTGAACTTAAGTAT+GGG | 0.596178 | 4.1:-17443245 | MS.gene08389:CDS |
| GATCAGGAGTATGAAGGTGA+AGG | 0.597456 | 4.1:-17442895 | MS.gene08389:CDS |
| GCCGAAGATCAGGAGTATGA+AGG | 0.599647 | 4.1:-17442901 | MS.gene08389:CDS |
| CATGCAAGAGCCATATGGCT+GGG | 0.599944 | 4.1:-17443745 | MS.gene08389:CDS |
| CACGGTCAATCATCTGAGGA+AGG | 0.602447 | 4.1:-17442943 | MS.gene08389:CDS |
| TAAAGAAACTCACCGGATGA+CGG | 0.603837 | 4.1:+17444688 | None:intergenic |
| TTGGCGCAGAAAACCCACTT+CGG | 0.603869 | 4.1:+17443271 | None:intergenic |
| CTAGAGAGGGACTTGGACAG+AGG | 0.604960 | 4.1:-17443420 | MS.gene08389:CDS |
| CGGGTTGTTAGGAACACCAC+CGG | 0.605352 | 4.1:-17444537 | MS.gene08389:CDS |
| TGAATATGAGCAAGGTGATG+AGG | 0.606447 | 4.1:-17442866 | MS.gene08389:CDS |
| GTTCCTAACAACCCGTCAAG+AGG | 0.607813 | 4.1:+17444545 | None:intergenic |
| TATGGCTGGGAACCTAGAAA+GGG | 0.609578 | 4.1:-17443732 | MS.gene08389:CDS |
| ATCATGTTTGCTACTGTGGG+AGG | 0.610033 | 4.1:+17443071 | None:intergenic |
| GATAGATTTCGTGTGCCCCA+AGG | 0.610131 | 4.1:-17443786 | MS.gene08389:CDS |
| ACAAGAGGTCAAGATGAAAG+AGG | 0.612476 | 4.1:-17443879 | MS.gene08389:CDS |
| ATATATGGAAGATGAAGATG+GGG | 0.612975 | 4.1:-17442800 | MS.gene08389:CDS |
| TTGCTGAACTTAAGTATGGG+AGG | 0.621411 | 4.1:-17443242 | MS.gene08389:CDS |
| GACAATACTGATGCAACTCA+CGG | 0.622935 | 4.1:-17442961 | MS.gene08389:CDS |
| GTGGTGACAGTCACCTAGAG+AGG | 0.623462 | 4.1:-17443473 | MS.gene08389:CDS |
| TTGTGATCATCTGGCAAACG+AGG | 0.626895 | 4.1:+17444023 | None:intergenic |
| TCCGTCAATAATCGTTTCCG+AGG | 0.626973 | 4.1:-17443519 | MS.gene08389:CDS |
| ACAGAGGAAGAATCAGCGGC+CGG | 0.629268 | 4.1:-17443404 | MS.gene08389:CDS |
| GGCAGTAAAATAGCTACACA+GGG | 0.630874 | 4.1:-17444335 | MS.gene08389:CDS |
| AGGGTTTGGTCCATGCAGGA+AGG | 0.631683 | 4.1:+17444364 | None:intergenic |
| AACCAGCAGTCACCTAGAGA+GGG | 0.636906 | 4.1:-17443433 | MS.gene08389:CDS |
| GAAGGTTGCCAGATGACGAG+AGG | 0.639411 | 4.1:-17443323 | MS.gene08389:CDS |
| CTAGAGAGGGACTTAGACAG+AGG | 0.639929 | 4.1:-17443459 | MS.gene08389:CDS |
| GGATGACGGAATGAACACTT+GGG | 0.640470 | 4.1:+17444702 | None:intergenic |
| AGGCTTCAATCGCCTCATGA+GGG | 0.642774 | 4.1:-17443369 | MS.gene08389:CDS |
| ATGTACCGCCACCACCTGCA+GGG | 0.643731 | 4.1:-17444133 | MS.gene08389:CDS |
| AAATTCTGATTACTATCATG+GGG | 0.645440 | 4.1:-17443919 | MS.gene08389:CDS |
| TTGCCGCAATCTGTGGCGTG+GGG | 0.646254 | 4.1:+17444483 | None:intergenic |
| CATGGACCAAACCCTACCAA+TGG | 0.648418 | 4.1:-17444356 | MS.gene08389:CDS |
| ATAAATCTTCCACCAAATGG+TGG | 0.648459 | 4.1:-17443492 | MS.gene08389:CDS |
| GCGGCCGGTTGTCATCTGGA+AGG | 0.649106 | 4.1:-17443389 | MS.gene08389:CDS |
| GGAGACTATGAATATGAGCA+AGG | 0.650461 | 4.1:-17442874 | MS.gene08389:CDS |
| TTGATGCACACGATTAGACC+GGG | 0.654044 | 4.1:+17444046 | None:intergenic |
| TGCGCTTGGATAAACGATGT+CGG | 0.656360 | 4.1:+17443640 | None:intergenic |
| AACTCACGGTCAATCATCTG+AGG | 0.660605 | 4.1:-17442947 | MS.gene08389:CDS |
| TTGGACAGAGGAAGAATCAG+CGG | 0.671127 | 4.1:-17443408 | MS.gene08389:CDS |
| TCAATGACAATGACCAACCA+AGG | 0.673022 | 4.1:-17444311 | MS.gene08389:CDS |
| TGAGTCTGAATCTGAAGTTG+TGG | 0.677604 | 4.1:+17445897 | None:intergenic |
| TGGTGACAGTCACCTAGAGA+GGG | 0.684816 | 4.1:-17443472 | MS.gene08389:CDS |
| TCATTATCTAACCCTGCAGG+TGG | 0.685323 | 4.1:+17444122 | None:intergenic |
| TGTTTACTACCATTATAAGG+CGG | 0.686484 | 4.1:+17444443 | None:intergenic |
| TCATATGAGTCATAACCTTG+GGG | 0.704228 | 4.1:+17443771 | None:intergenic |
| CTCTAGCATACTCACTATGG+CGG | 0.707134 | 4.1:+17444772 | None:intergenic |
| GCTACAAGAACATCAAACCC+AGG | 0.714968 | 4.1:+17443954 | None:intergenic |
| GCAGTAAAATAGCTACACAG+GGG | 0.802739 | 4.1:-17444334 | MS.gene08389:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTAATAATAATA+GGG | + | chr4.1:17443520-17443539 | None:intergenic | 0.0% |
| !!! | TTTTTTATTTTAATAATAAT+AGG | + | chr4.1:17443521-17443540 | None:intergenic | 0.0% |
| !! | ATAATTGATAAAGAAAAAAA+AGG | + | chr4.1:17442924-17442943 | None:intergenic | 10.0% |
| !! | TAATTGATAAAGAAAAAAAA+GGG | + | chr4.1:17442923-17442942 | None:intergenic | 10.0% |
| !!! | AAATTTAATTTTGATTAATG+GGG | - | chr4.1:17443014-17443033 | MS.gene08389:CDS | 10.0% |
| !!! | TTTATCAATTATATCTTTTA+GGG | - | chr4.1:17442932-17442951 | MS.gene08389:CDS | 10.0% |
| !! | CATAACTCAATTAAAATAAA+AGG | + | chr4.1:17444030-17444049 | None:intergenic | 15.0% |
| !!! | CTTTATCAATTATATCTTTT+AGG | - | chr4.1:17442931-17442950 | MS.gene08389:CDS | 15.0% |
| !! | AATACTCTAAACTTAATGAA+AGG | + | chr4.1:17443429-17443448 | None:intergenic | 20.0% |
| !! | ACAGAAAAATATGTTTAAGT+TGG | - | chr4.1:17444512-17444531 | MS.gene08389:CDS | 20.0% |
| !! | CATCTGTTATTAAGAATATA+AGG | - | chr4.1:17443780-17443799 | MS.gene08389:CDS | 20.0% |
| !!! | AACTTAAACATATTTTTCTG+TGG | + | chr4.1:17444513-17444532 | None:intergenic | 20.0% |
| !!! | ATCTACAATTCAACAATTTT+AGG | + | chr4.1:17443077-17443096 | None:intergenic | 20.0% |
| !!! | TCTACAATTCAACAATTTTA+GGG | + | chr4.1:17443076-17443095 | None:intergenic | 20.0% |
| ! | AAATCAAGAGCAAGAATATA+TGG | - | chr4.1:17445859-17445878 | MS.gene08389:CDS | 25.0% |
| ! | AAATTCTGATTACTATCATG+GGG | - | chr4.1:17444755-17444774 | MS.gene08389:CDS | 25.0% |
| ! | AACAAAAAAATCTTCATGGA+TGG | + | chr4.1:17443103-17443122 | None:intergenic | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | chr4.1:17443493-17443512 | MS.gene08389:CDS | 25.0% |
| ! | AATAATGACCAACAATCATT+TGG | - | chr4.1:17445464-17445483 | MS.gene08389:intron | 25.0% |
| ! | AATATATGGAAGATGAAGAT+GGG | - | chr4.1:17445873-17445892 | MS.gene08389:CDS | 25.0% |
| ! | ACAAAAAAATCTTCATGGAT+GGG | + | chr4.1:17443102-17443121 | None:intergenic | 25.0% |
| ! | AGAAATTCTGATTACTATCA+TGG | - | chr4.1:17444753-17444772 | MS.gene08389:CDS | 25.0% |
| ! | AGTATTTGAGTCTTGATTAT+AGG | - | chr4.1:17443553-17443572 | MS.gene08389:CDS | 25.0% |
| ! | GAAATTCTGATTACTATCAT+GGG | - | chr4.1:17444754-17444773 | MS.gene08389:CDS | 25.0% |
| ! | GTCTAACAAAAAAATCTTCA+TGG | + | chr4.1:17443107-17443126 | None:intergenic | 25.0% |
| ! | TTCTCTTCTTTATTGAAACA+GGG | - | chr4.1:17443864-17443883 | MS.gene08389:CDS | 25.0% |
| !! | CCTTTTGTATTTAACATAGT+GGG | - | chr4.1:17443231-17443250 | MS.gene08389:CDS | 25.0% |
| !! | TCCTTTTGTATTTAACATAG+TGG | - | chr4.1:17443230-17443249 | MS.gene08389:CDS | 25.0% |
| !!! | AAAAAGGGCTTTTTAGAAAA+AGG | + | chr4.1:17442908-17442927 | None:intergenic | 25.0% |
| !!! | GTTAGACTGTGAATTTTTTA+TGG | - | chr4.1:17443120-17443139 | MS.gene08389:CDS | 25.0% |
| !!! | TAATTTTGATTAATGGGGTT+TGG | - | chr4.1:17443019-17443038 | MS.gene08389:CDS | 25.0% |
| !!! | TGATCATCTTGTTATTTGAT+TGG | - | chr4.1:17443170-17443189 | MS.gene08389:CDS | 25.0% |
| !!! | TTTCAGATTCGAATTAGTTT+TGG | - | chr4.1:17442955-17442974 | MS.gene08389:CDS | 25.0% |
| AAAGGAATGATCAAAAAGAG+AGG | + | chr4.1:17443216-17443235 | None:intergenic | 30.0% | |
| AATAATAATAGGGACCTGTT+TGG | + | chr4.1:17443510-17443529 | None:intergenic | 30.0% | |
| AATGAAGGAATTACCGAAAA+CGG | - | chr4.1:17445635-17445654 | MS.gene08389:intron | 30.0% | |
| AGAATAAATCTTCCACCAAA+TGG | - | chr4.1:17445179-17445198 | MS.gene08389:intron | 30.0% | |
| AGTCAAAAGATAGGACAAAA+TGG | + | chr4.1:17444065-17444084 | None:intergenic | 30.0% | |
| AGTTAACAAAAACAACTTCC+AGG | + | chr4.1:17443624-17443643 | None:intergenic | 30.0% | |
| ATACAGACAAGTCAAAAGAT+AGG | + | chr4.1:17444074-17444093 | None:intergenic | 30.0% | |
| ATATATGGAAGATGAAGATG+GGG | - | chr4.1:17445874-17445893 | MS.gene08389:CDS | 30.0% | |
| ATCATATGAGTCATAACCTT+GGG | + | chr4.1:17444907-17444926 | None:intergenic | 30.0% | |
| ATGAGTCCTTCTTTCTATTT+GGG | + | chr4.1:17444973-17444992 | None:intergenic | 30.0% | |
| CATGATGACAATAAGAATGA+AGG | - | chr4.1:17445620-17445639 | MS.gene08389:intron | 30.0% | |
| CCAAAAGGTTTCTTAAAACT+TGG | + | chr4.1:17444399-17444418 | None:intergenic | 30.0% | |
| CCCACTATGTTAAATACAAA+AGG | + | chr4.1:17443234-17443253 | None:intergenic | 30.0% | |
| CTTTGAATGAATACGATGTA+GGG | - | chr4.1:17444826-17444845 | MS.gene08389:intron | 30.0% | |
| GAATATATGGAAGATGAAGA+TGG | - | chr4.1:17445872-17445891 | MS.gene08389:CDS | 30.0% | |
| GATGAATTTGGTAAAACAAG+AGG | - | chr4.1:17444780-17444799 | MS.gene08389:CDS | 30.0% | |
| GCTTGTTTACTACCATTATA+AGG | + | chr4.1:17444237-17444256 | None:intergenic | 30.0% | |
| GTACATCATCTTCATATTGT+TGG | + | chr4.1:17445514-17445533 | None:intergenic | 30.0% | |
| GTTCTCTTCTTTATTGAAAC+AGG | - | chr4.1:17443863-17443882 | MS.gene08389:CDS | 30.0% | |
| TCTTTGAATGAATACGATGT+AGG | - | chr4.1:17444825-17444844 | MS.gene08389:intron | 30.0% | |
| TGTTTACTACCATTATAAGG+CGG | + | chr4.1:17444234-17444253 | None:intergenic | 30.0% | |
| ! | AGAATTTCACTAAGTGGTTT+TGG | + | chr4.1:17445548-17445567 | None:intergenic | 30.0% |
| ! | CCTTGCATTTTCTTTCAAAA+GGG | - | chr4.1:17444261-17444280 | MS.gene08389:CDS | 30.0% |
| ! | CTTGCATTTTCTTTCAAAAG+GGG | - | chr4.1:17444262-17444281 | MS.gene08389:CDS | 30.0% |
| ! | TATGAGTATGAACAAGTTGA+GGG | - | chr4.1:17445833-17445852 | MS.gene08389:CDS | 30.0% |
| ! | TTAAGTTCAGCAAGACTTTT+TGG | + | chr4.1:17445425-17445444 | None:intergenic | 30.0% |
| !! | TTTTTATGGATTGCGTTTCT+TGG | - | chr4.1:17443134-17443153 | MS.gene08389:CDS | 30.0% |
| !!! | ACATGCTGCTTTTATTTTTG+TGG | - | chr4.1:17443709-17443728 | MS.gene08389:CDS | 30.0% |
| !!! | AGTTTTAAGAAACCTTTTGG+CGG | - | chr4.1:17444399-17444418 | MS.gene08389:CDS | 30.0% |
| !!! | CCAAGTTTTAAGAAACCTTT+TGG | - | chr4.1:17444396-17444415 | MS.gene08389:CDS | 30.0% |
| !!! | TATCTTTTGACTTGTCTGTA+TGG | - | chr4.1:17444073-17444092 | MS.gene08389:CDS | 30.0% |
| !!! | TGTGTTTTTTTGAGTAATCC+TGG | - | chr4.1:17443603-17443622 | MS.gene08389:CDS | 30.0% |
| AACCAATACCAACAATCTCT+AGG | + | chr4.1:17443933-17443952 | None:intergenic | 35.0% | |
| AAGAACAACACCAATCTTCT+TGG | + | chr4.1:17445909-17445928 | None:intergenic | 35.0% | |
| ACCAACAATCATTTGGAAAG+AGG | - | chr4.1:17445471-17445490 | MS.gene08389:intron | 35.0% | |
| ACCACTTAGTGAAATTCTGA+AGG | - | chr4.1:17445550-17445569 | MS.gene08389:intron | 35.0% | |
| ACTGCTAACAAACACTATAC+AGG | + | chr4.1:17443583-17443602 | None:intergenic | 35.0% | |
| AGCAAGAAAGTAGACACAAT+CGG | + | chr4.1:17442847-17442866 | None:intergenic | 35.0% | |
| AGTCTTGCTGAACTTAAGTA+TGG | - | chr4.1:17445428-17445447 | MS.gene08389:intron | 35.0% | |
| ATAAATCTTCCACCAAATGG+TGG | - | chr4.1:17445182-17445201 | MS.gene08389:intron | 35.0% | |
| ATCCTAGAGATTGTTGGTAT+TGG | - | chr4.1:17443928-17443947 | MS.gene08389:CDS | 35.0% | |
| ATCTCTCATTTGAAGGTAAC+TGG | + | chr4.1:17445136-17445155 | None:intergenic | 35.0% | |
| CATGTGTATAGTGTAGTGAA+TGG | - | chr4.1:17443403-17443422 | MS.gene08389:CDS | 35.0% | |
| CGTATTCATTCAAAGAGTCT+GGG | + | chr4.1:17444821-17444840 | None:intergenic | 35.0% | |
| CTATGGAAATTGTGATCATC+TGG | + | chr4.1:17444663-17444682 | None:intergenic | 35.0% | |
| GAACCCTAATTGTGATTGTT+AGG | - | chr4.1:17443283-17443302 | MS.gene08389:CDS | 35.0% | |
| GAAGATGATGTACCATTTGA+AGG | - | chr4.1:17445521-17445540 | MS.gene08389:intron | 35.0% | |
| GATCATATGAGTCATAACCT+TGG | + | chr4.1:17444908-17444927 | None:intergenic | 35.0% | |
| GATGAGTCCTTCTTTCTATT+TGG | + | chr4.1:17444974-17444993 | None:intergenic | 35.0% | |
| GATGATCACAATTTCCATAG+TGG | - | chr4.1:17444663-17444682 | MS.gene08389:intron | 35.0% | |
| GGTCCTAACAATCACAATTA+GGG | + | chr4.1:17443289-17443308 | None:intergenic | 35.0% | |
| GTATGAGTATGAACAAGTTG+AGG | - | chr4.1:17445832-17445851 | MS.gene08389:CDS | 35.0% | |
| GTCTTGCTGAACTTAAGTAT+GGG | - | chr4.1:17445429-17445448 | MS.gene08389:intron | 35.0% | |
| GTGAAGGAAATTAGGATGAA+CGG | - | chr4.1:17443253-17443272 | MS.gene08389:CDS | 35.0% | |
| TATCATGGGGAAGATGAATT+TGG | - | chr4.1:17444768-17444787 | MS.gene08389:CDS | 35.0% | |
| TCACAATTTCCATAGTGGTA+AGG | - | chr4.1:17444668-17444687 | MS.gene08389:intron | 35.0% | |
| TCATATGAGTCATAACCTTG+GGG | + | chr4.1:17444906-17444925 | None:intergenic | 35.0% | |
| TCCTCTTTCCAAATGATTGT+TGG | + | chr4.1:17445475-17445494 | None:intergenic | 35.0% | |
| TCCTTCAGAATTTCACTAAG+TGG | + | chr4.1:17445554-17445573 | None:intergenic | 35.0% | |
| TCGTATTCATTCAAAGAGTC+TGG | + | chr4.1:17444822-17444841 | None:intergenic | 35.0% | |
| TGAAGGAAATTAGGATGAAC+GGG | - | chr4.1:17443254-17443273 | MS.gene08389:CDS | 35.0% | |
| TGGTCCTAACAATCACAATT+AGG | + | chr4.1:17443290-17443309 | None:intergenic | 35.0% | |
| TTGAAAAACATGCACCAGAA+AGG | - | chr4.1:17444424-17444443 | MS.gene08389:CDS | 35.0% | |
| TTGAAAGAAAATGCAAGGCA+CGG | + | chr4.1:17444259-17444278 | None:intergenic | 35.0% | |
| ! | AAGAACCTTTTTGCATGTCA+AGG | + | chr4.1:17442874-17442893 | None:intergenic | 35.0% |
| ! | AGAACCTTTTTGCATGTCAA+GGG | + | chr4.1:17442873-17442892 | None:intergenic | 35.0% |
| ! | CAAAAGGGGTTTTGCTTAAA+AGG | - | chr4.1:17444276-17444295 | MS.gene08389:CDS | 35.0% |
| ! | CTATTTTACTGCCATTGGTA+GGG | + | chr4.1:17444332-17444351 | None:intergenic | 35.0% |
| ! | GAAATTCTGAAGGAGAAGAA+AGG | - | chr4.1:17445560-17445579 | MS.gene08389:intron | 35.0% |
| ! | GCCTTGCATTTTCTTTCAAA+AGG | - | chr4.1:17444260-17444279 | MS.gene08389:CDS | 35.0% |
| !! | CCCTTTTGAAAGAAAATGCA+AGG | + | chr4.1:17444264-17444283 | None:intergenic | 35.0% |
| !! | GATTGTTGGTATTGGTTGAA+TGG | - | chr4.1:17443936-17443955 | MS.gene08389:CDS | 35.0% |
| !! | GTATTTAACATAGTGGGTGA+AGG | - | chr4.1:17443237-17443256 | MS.gene08389:CDS | 35.0% |
| !! | TGTAGCTATTTTACTGCCAT+TGG | + | chr4.1:17444337-17444356 | None:intergenic | 35.0% |
| !!! | AGCAAAGTCATCGATTTTCT+CGG | - | chr4.1:17445099-17445118 | MS.gene08389:intron | 35.0% |
| AAAGGAAAGAAAACTCGTGC+TGG | + | chr4.1:17444012-17444031 | None:intergenic | 40.0% | |
| AACACCTGCAACATTTGCTT+GGG | + | chr4.1:17444457-17444476 | None:intergenic | 40.0% | |
| ACAAGAGGTCAAGATGAAAG+AGG | - | chr4.1:17444795-17444814 | MS.gene08389:intron | 40.0% | |
| ACCTTCATACTCCTGATCTT+CGG | + | chr4.1:17445777-17445796 | None:intergenic | 40.0% | |
| ACCTTCCTCTTAATCTATCC+TGG | + | chr4.1:17445337-17445356 | None:intergenic | 40.0% | |
| AGGATCCAGGATAGATTAAG+AGG | - | chr4.1:17445329-17445348 | MS.gene08389:intron | 40.0% | |
| CTCAAGATGAAGCCTTGAAA+AGG | - | chr4.1:17442817-17442836 | MS.gene08389:CDS | 40.0% | |
| GAAGGAAATTAGGATGAACG+GGG | - | chr4.1:17443255-17443274 | MS.gene08389:CDS | 40.0% | |
| GACAATACTGATGCAACTCA+CGG | - | chr4.1:17445713-17445732 | MS.gene08389:intron | 40.0% | |
| GAGTCAATCCTAGAGATTGT+TGG | - | chr4.1:17443922-17443941 | MS.gene08389:CDS | 40.0% | |
| GATCAGCCCAAATAGAAAGA+AGG | - | chr4.1:17444964-17444983 | MS.gene08389:intron | 40.0% | |
| GATGACTTTGCCAAGAAGAT+TGG | - | chr4.1:17445896-17445915 | MS.gene08389:CDS | 40.0% | |
| GCAGTAAAATAGCTACACAG+GGG | - | chr4.1:17444340-17444359 | MS.gene08389:CDS | 40.0% | |
| GCTGATGTCAATTGAGCATT+TGG | - | chr4.1:17443369-17443388 | MS.gene08389:CDS | 40.0% | |
| GGAGACTATGAATATGAGCA+AGG | - | chr4.1:17445800-17445819 | MS.gene08389:intron | 40.0% | |
| GGCAGTAAAATAGCTACACA+GGG | - | chr4.1:17444339-17444358 | MS.gene08389:CDS | 40.0% | |
| GTGGAAGATTTATTCTGCCT+CGG | + | chr4.1:17445175-17445194 | None:intergenic | 40.0% | |
| TAAAGAAACTCACCGGATGA+CGG | + | chr4.1:17443989-17444008 | None:intergenic | 40.0% | |
| TCAATGACAATGACCAACCA+AGG | - | chr4.1:17444363-17444382 | MS.gene08389:CDS | 40.0% | |
| TCCAGGATAGATTAAGAGGA+AGG | - | chr4.1:17445333-17445352 | MS.gene08389:intron | 40.0% | |
| TGAATATGAGCAAGGTGATG+AGG | - | chr4.1:17445808-17445827 | MS.gene08389:intron | 40.0% | |
| TGACTCTAGCATACTCACTA+TGG | + | chr4.1:17443908-17443927 | None:intergenic | 40.0% | |
| TGGAAAGAGGAAAAGCTTCA+GGG | - | chr4.1:17445484-17445503 | MS.gene08389:intron | 40.0% | |
| TGGCAGTAAAATAGCTACAC+AGG | - | chr4.1:17444338-17444357 | MS.gene08389:CDS | 40.0% | |
| TTCTCCCTTGACATGCAAAA+AGG | - | chr4.1:17442866-17442885 | MS.gene08389:CDS | 40.0% | |
| TTGCTGAACTTAAGTATGGG+AGG | - | chr4.1:17445432-17445451 | MS.gene08389:intron | 40.0% | |
| TTGGAAAGAGGAAAAGCTTC+AGG | - | chr4.1:17445483-17445502 | MS.gene08389:intron | 40.0% | |
| ! | AATCTGAAGTTGTGGCTGTT+GGG | + | chr4.1:17442772-17442791 | None:intergenic | 40.0% |
| ! | CTCTGACAATGTTCCGTTTT+CGG | + | chr4.1:17445651-17445670 | None:intergenic | 40.0% |
| ! | GACATCAGCTTACACTTTTG+TGG | + | chr4.1:17443358-17443377 | None:intergenic | 40.0% |
| ! | GTCATCATGTTTGCTACTGT+GGG | + | chr4.1:17445609-17445628 | None:intergenic | 40.0% |
| ! | GTGGAGCAGTCTCAAATTTT+TGG | + | chr4.1:17444494-17444513 | None:intergenic | 40.0% |
| ! | TGAGTCTGAATCTGAAGTTG+TGG | + | chr4.1:17442780-17442799 | None:intergenic | 40.0% |
| ! | TGTCATCATGTTTGCTACTG+TGG | + | chr4.1:17445610-17445629 | None:intergenic | 40.0% |
| ! | TTGACGGATCTCTCATTTGA+AGG | + | chr4.1:17445143-17445162 | None:intergenic | 40.0% |
| ! | TTTTACATGCAGCCTCTTGA+CGG | - | chr4.1:17444117-17444136 | MS.gene08389:CDS | 40.0% |
| !! | ACAATCGGTGTTCCTTTTCA+AGG | + | chr4.1:17442832-17442851 | None:intergenic | 40.0% |
| !! | CATAGTGGGTGAAGGAAATT+AGG | - | chr4.1:17443245-17443264 | MS.gene08389:CDS | 40.0% |
| !! | CTTTTCAAGGCTTCATCTTG+AGG | + | chr4.1:17442819-17442838 | None:intergenic | 40.0% |
| !! | GCAGTCTCAAATTTTTGGAC+AGG | + | chr4.1:17444489-17444508 | None:intergenic | 40.0% |
| !! | GCTATTTTACTGCCATTGGT+AGG | + | chr4.1:17444333-17444352 | None:intergenic | 40.0% |
| !! | TGTTTTTCAATGCCGCCAAA+AGG | + | chr4.1:17444414-17444433 | None:intergenic | 40.0% |
| !!! | AAGTCATCGATTTTCTCGGA+AGG | - | chr4.1:17445103-17445122 | MS.gene08389:intron | 40.0% |
| !!! | AGTGGTTTTGGACCTTCAAA+TGG | + | chr4.1:17445536-17445555 | None:intergenic | 40.0% |
| AACTCACGGTCAATCATCTG+AGG | - | chr4.1:17445727-17445746 | MS.gene08389:intron | 45.0% | |
| AACTTGGATTCTCAGCTCCT+TGG | + | chr4.1:17444383-17444402 | None:intergenic | 45.0% | |
| AAGGCTTCATCTTGAGGAGA+AGG | + | chr4.1:17442813-17442832 | None:intergenic | 45.0% | |
| AAGTTTCTCCTCTCGTCATC+TGG | + | chr4.1:17445362-17445381 | None:intergenic | 45.0% | |
| ACCATTATAAGGCGGTGCAT+GGG | + | chr4.1:17444226-17444245 | None:intergenic | 45.0% | |
| ACCTGCAGGGTTAGATAATG+AGG | - | chr4.1:17444554-17444573 | MS.gene08389:intron | 45.0% | |
| ACTTCCCAAGCAAATGTTGC+AGG | - | chr4.1:17444450-17444469 | MS.gene08389:CDS | 45.0% | |
| ATATGGCTGGGAACCTAGAA+AGG | - | chr4.1:17444941-17444960 | MS.gene08389:intron | 45.0% | |
| ATTTGGGCTGATCCCTTTCT+AGG | + | chr4.1:17444957-17444976 | None:intergenic | 45.0% | |
| CAACACCTGCAACATTTGCT+TGG | + | chr4.1:17444458-17444477 | None:intergenic | 45.0% | |
| CAAGTGTTCATTCCGTCATC+CGG | - | chr4.1:17443974-17443993 | MS.gene08389:CDS | 45.0% | |
| CGTCATTGTCCTTACCACTA+TGG | + | chr4.1:17444680-17444699 | None:intergenic | 45.0% | |
| CTCTAGCATACTCACTATGG+CGG | + | chr4.1:17443905-17443924 | None:intergenic | 45.0% | |
| CTGAAGGAGAAGAAAGGAGT+TGG | - | chr4.1:17445566-17445585 | MS.gene08389:intron | 45.0% | |
| GATCACATGCAAGAGCCATA+TGG | - | chr4.1:17444924-17444943 | MS.gene08389:intron | 45.0% | |
| GCCTCGGAAACGATTATTGA+CGG | + | chr4.1:17445159-17445178 | None:intergenic | 45.0% | |
| GCTACAAGAACATCAAACCC+AGG | + | chr4.1:17444723-17444742 | None:intergenic | 45.0% | |
| GGAAGAAGAGTCCAAGATTC+AGG | - | chr4.1:17445676-17445695 | MS.gene08389:intron | 45.0% | |
| GTTGATGCACACGATTAGAC+CGG | + | chr4.1:17444632-17444651 | None:intergenic | 45.0% | |
| TACCATTATAAGGCGGTGCA+TGG | + | chr4.1:17444227-17444246 | None:intergenic | 45.0% | |
| TATGGCTGGGAACCTAGAAA+GGG | - | chr4.1:17444942-17444961 | MS.gene08389:intron | 45.0% | |
| TCATTATCTAACCCTGCAGG+TGG | + | chr4.1:17444555-17444574 | None:intergenic | 45.0% | |
| TCCGTCAATAATCGTTTCCG+AGG | - | chr4.1:17445155-17445174 | MS.gene08389:intron | 45.0% | |
| TGCGCTTGGATAAACGATGT+CGG | + | chr4.1:17445037-17445056 | None:intergenic | 45.0% | |
| TTACTGCCATTGGTAGGGTT+TGG | + | chr4.1:17444327-17444346 | None:intergenic | 45.0% | |
| TTGATGCACACGATTAGACC+GGG | + | chr4.1:17444631-17444650 | None:intergenic | 45.0% | |
| TTGGACAGAGGAAGAATCAG+CGG | - | chr4.1:17445266-17445285 | MS.gene08389:intron | 45.0% | |
| TTGTGATCATCTGGCAAACG+AGG | + | chr4.1:17444654-17444673 | None:intergenic | 45.0% | |
| TTTACATGCAGCCTCTTGAC+GGG | - | chr4.1:17444118-17444137 | MS.gene08389:CDS | 45.0% | |
| TTTCTAGGTTCCCAGCCATA+TGG | + | chr4.1:17444942-17444961 | None:intergenic | 45.0% | |
| ! | ATCATGTTTGCTACTGTGGG+AGG | + | chr4.1:17445606-17445625 | None:intergenic | 45.0% |
| ! | GAATCTGAAGTTGTGGCTGT+TGG | + | chr4.1:17442773-17442792 | None:intergenic | 45.0% |
| ! | GATCAGGAGTATGAAGGTGA+AGG | - | chr4.1:17445779-17445798 | MS.gene08389:intron | 45.0% |
| ! | GCTTGGGAAGTTTTCCTTTC+TGG | + | chr4.1:17444441-17444460 | None:intergenic | 45.0% |
| ! | GTGCTGGTAAAGAAACTCAC+CGG | + | chr4.1:17443996-17444015 | None:intergenic | 45.0% |
| ! | TCATCTTGAGGAGAAGGTGT+TGG | + | chr4.1:17442807-17442826 | None:intergenic | 45.0% |
| !! | GGATGACGGAATGAACACTT+GGG | + | chr4.1:17443975-17443994 | None:intergenic | 45.0% |
| !! | TAATAAAATAACAAAAATTA+TGG | + | chr4.1:17443310-17443329 | None:intergenic | 5.0% |
| !!! | AAAAATTTAATTTTGATTAA+TGG | - | chr4.1:17443012-17443031 | MS.gene08389:CDS | 5.0% |
| !!! | AAAATTTAATTTTGATTAAT+GGG | - | chr4.1:17443013-17443032 | MS.gene08389:CDS | 5.0% |
| AACCAGCAGTCACCTAGAGA+GGG | - | chr4.1:17445241-17445260 | MS.gene08389:intron | 50.0% | |
| AAGGCTTCAATCGCCTCATG+AGG | - | chr4.1:17445304-17445323 | MS.gene08389:intron | 50.0% | |
| ACACGATTAGACCGGGCATT+AGG | + | chr4.1:17444624-17444643 | None:intergenic | 50.0% | |
| ACATGCAAGAGCCATATGGC+TGG | - | chr4.1:17444928-17444947 | MS.gene08389:intron | 50.0% | |
| ACCCATGCACCGCCTTATAA+TGG | - | chr4.1:17444222-17444241 | MS.gene08389:CDS | 50.0% | |
| AGGCTTCAATCGCCTCATGA+GGG | - | chr4.1:17445305-17445324 | MS.gene08389:intron | 50.0% | |
| AGGTGACTGTCACCACCATT+TGG | + | chr4.1:17445197-17445216 | None:intergenic | 50.0% | |
| ATCTGTCGTCGCTCATGATG+AGG | - | chr4.1:17445076-17445095 | MS.gene08389:intron | 50.0% | |
| CACGGTCAATCATCTGAGGA+AGG | - | chr4.1:17445731-17445750 | MS.gene08389:intron | 50.0% | |
| CATGCAAGAGCCATATGGCT+GGG | - | chr4.1:17444929-17444948 | MS.gene08389:intron | 50.0% | |
| CATGGACCAAACCCTACCAA+TGG | - | chr4.1:17444318-17444337 | MS.gene08389:CDS | 50.0% | |
| CGGAACATTGTCAGAGAGCA+AGG | - | chr4.1:17445655-17445674 | MS.gene08389:intron | 50.0% | |
| CGTTTATCCAAGCGCAGGAA+GGG | - | chr4.1:17445041-17445060 | MS.gene08389:intron | 50.0% | |
| CTAGAGAGGGACTTAGACAG+AGG | - | chr4.1:17445215-17445234 | MS.gene08389:intron | 50.0% | |
| CTCTGTCTAAGTCCCTCTCT+AGG | + | chr4.1:17445217-17445236 | None:intergenic | 50.0% | |
| CTTCAGCAGTCGATCGAATG+AGG | - | chr4.1:17445379-17445398 | MS.gene08389:intron | 50.0% | |
| GAAGCCTTCCAGATGACAAC+CGG | + | chr4.1:17445292-17445311 | None:intergenic | 50.0% | |
| GACATCGTTTATCCAAGCGC+AGG | - | chr4.1:17445036-17445055 | MS.gene08389:intron | 50.0% | |
| GAGAAGAAAGGAGTTGGAGC+TGG | - | chr4.1:17445572-17445591 | MS.gene08389:intron | 50.0% | |
| GATAGATTTCGTGTGCCCCA+AGG | - | chr4.1:17444888-17444907 | MS.gene08389:intron | 50.0% | |
| GATCGAATGAGGACCGAAGT+GGG | - | chr4.1:17445390-17445409 | MS.gene08389:intron | 50.0% | |
| GCCTCATTATCTAACCCTGC+AGG | + | chr4.1:17444558-17444577 | None:intergenic | 50.0% | |
| GTTCCTAACAACCCGTCAAG+AGG | + | chr4.1:17444132-17444151 | None:intergenic | 50.0% | |
| TCCAAGATTCAGGCTGCTGA+TGG | - | chr4.1:17445686-17445705 | MS.gene08389:intron | 50.0% | |
| TCCATCAGCAGCCTGAATCT+TGG | + | chr4.1:17445690-17445709 | None:intergenic | 50.0% | |
| TCGTAGTCCTGACAGTGTTG+AGG | - | chr4.1:17445001-17445020 | MS.gene08389:intron | 50.0% | |
| TCGTTTATCCAAGCGCAGGA+AGG | - | chr4.1:17445040-17445059 | MS.gene08389:intron | 50.0% | |
| TGACTGTCACCACCATTTGG+TGG | + | chr4.1:17445194-17445213 | None:intergenic | 50.0% | |
| TGGATTCTCAGCTCCTTGGT+TGG | + | chr4.1:17444379-17444398 | None:intergenic | 50.0% | |
| TGGTGACAGTCACCTAGAGA+GGG | - | chr4.1:17445202-17445221 | MS.gene08389:intron | 50.0% | |
| TTATCTAACCCTGCAGGTGG+TGG | + | chr4.1:17444552-17444571 | None:intergenic | 50.0% | |
| TTCAATCGCCTCATGAGGGA+AGG | - | chr4.1:17445309-17445328 | MS.gene08389:intron | 50.0% | |
| TTCTCAGAGAGTCGTCTCCT+GGG | - | chr4.1:17444703-17444722 | MS.gene08389:CDS | 50.0% | |
| TTGGCGCAGAAAACCCACTT+CGG | + | chr4.1:17445406-17445425 | None:intergenic | 50.0% | |
| TTGTGGCTGTGCGAATCATG+TGG | - | chr4.1:17443726-17443745 | MS.gene08389:CDS | 50.0% | |
| TTTCTCAGAGAGTCGTCTCC+TGG | - | chr4.1:17444702-17444721 | MS.gene08389:CDS | 50.0% | |
| ! | GCCGAAGATCAGGAGTATGA+AGG | - | chr4.1:17445773-17445792 | MS.gene08389:intron | 50.0% |
| ! | TCTGAGACCTCAACACTGTC+AGG | + | chr4.1:17445011-17445030 | None:intergenic | 50.0% |
| !! | CGGATGACGGAATGAACACT+TGG | + | chr4.1:17443976-17443995 | None:intergenic | 50.0% |
| AAAGGAGTTGGAGCTGGTGC+AGG | - | chr4.1:17445578-17445597 | MS.gene08389:intron | 55.0% | |
| ACAGAGGAAGAATCAGCGGC+CGG | - | chr4.1:17445270-17445289 | MS.gene08389:intron | 55.0% | |
| AGTTCTCCACCGCCAACCAA+TGG | - | chr4.1:17444597-17444616 | MS.gene08389:intron | 55.0% | |
| CAACCAATGGGCCTAATGCC+CGG | - | chr4.1:17444610-17444629 | MS.gene08389:intron | 55.0% | |
| CAGTCACCTAGAGAGGGACT+TGG | - | chr4.1:17445208-17445227 | MS.gene08389:intron | 55.0% | |
| CGATCGAATGAGGACCGAAG+TGG | - | chr4.1:17445389-17445408 | MS.gene08389:intron | 55.0% | |
| CGATGAAGCTGCCGAAGATC+AGG | - | chr4.1:17445763-17445782 | MS.gene08389:intron | 55.0% | |
| CGGGTTGTTAGGAACACCAC+CGG | - | chr4.1:17444137-17444156 | MS.gene08389:CDS | 55.0% | |
| CTAGAGAGGGACTTGGACAG+AGG | - | chr4.1:17445254-17445273 | MS.gene08389:intron | 55.0% | |
| CTCTGTCCAAGTCCCTCTCT+AGG | + | chr4.1:17445256-17445275 | None:intergenic | 55.0% | |
| GAACCAGCAGTCACCTAGAG+AGG | - | chr4.1:17445240-17445259 | MS.gene08389:intron | 55.0% | |
| GAAGGTTGCCAGATGACGAG+AGG | - | chr4.1:17445351-17445370 | MS.gene08389:intron | 55.0% | |
| GACAGATGTGCCTTCCTGCA+TGG | - | chr4.1:17444300-17444319 | MS.gene08389:CDS | 55.0% | |
| GCAGATGTTGCCGCAATCTG+TGG | + | chr4.1:17444201-17444220 | None:intergenic | 55.0% | |
| GTGGTGACAGTCACCTAGAG+AGG | - | chr4.1:17445201-17445220 | MS.gene08389:intron | 55.0% | |
| GTTCTCCACCGCCAACCAAT+GGG | - | chr4.1:17444598-17444617 | MS.gene08389:intron | 55.0% | |
| TCCAAGCGCAGGAAGGGAAA+CGG | - | chr4.1:17445047-17445066 | MS.gene08389:intron | 55.0% | |
| TCCTGGATCCTTCCCTCATG+AGG | + | chr4.1:17445320-17445339 | None:intergenic | 55.0% | |
| ! | AGGGTTTGGTCCATGCAGGA+AGG | + | chr4.1:17444313-17444332 | None:intergenic | 55.0% |
| ! | GCATTAGGCCCATTGGTTGG+CGG | + | chr4.1:17444609-17444628 | None:intergenic | 55.0% |
| ! | TGGTAGGGTTTGGTCCATGC+AGG | + | chr4.1:17444317-17444336 | None:intergenic | 55.0% |
| !! | CAGCCTCTTGACGGGTTGTT+AGG | - | chr4.1:17444126-17444145 | MS.gene08389:CDS | 55.0% |
| AGACCGGGCATTAGGCCCAT+TGG | + | chr4.1:17444616-17444635 | None:intergenic | 60.0% | |
| ATCAGCGGCCGGTTGTCATC+TGG | - | chr4.1:17445281-17445300 | MS.gene08389:intron | 60.0% | |
| ATCTGTGGCGTGGGGACAGA+TGG | + | chr4.1:17444186-17444205 | None:intergenic | 60.0% | |
| ATGTACCGCCACCACCTGCA+GGG | - | chr4.1:17444541-17444560 | MS.gene08389:CDS | 60.0% | |
| CGGGCATTAGGCCCATTGGT+TGG | + | chr4.1:17444612-17444631 | None:intergenic | 60.0% | |
| GCCTCATGAGGGAAGGATCC+AGG | - | chr4.1:17445316-17445335 | MS.gene08389:intron | 60.0% | |
| GTCCCTCTCTAGGTGACTGC+TGG | + | chr4.1:17445246-17445265 | None:intergenic | 60.0% | |
| GTTGCCGCAATCTGTGGCGT+GGG | + | chr4.1:17444195-17444214 | None:intergenic | 60.0% | |
| TGTCCCCACGCCACAGATTG+CGG | - | chr4.1:17444188-17444207 | MS.gene08389:CDS | 60.0% | |
| TGTTGCCGCAATCTGTGGCG+TGG | + | chr4.1:17444196-17444215 | None:intergenic | 60.0% | |
| TTGCCGCAATCTGTGGCGTG+GGG | + | chr4.1:17444194-17444213 | None:intergenic | 60.0% | |
| ! | TCTAACCCTGCAGGTGGTGG+CGG | + | chr4.1:17444549-17444568 | None:intergenic | 60.0% |
| ! | TTAGGCCCATTGGTTGGCGG+TGG | + | chr4.1:17444606-17444625 | None:intergenic | 60.0% |
| CATGTACCGCCACCACCTGC+AGG | - | chr4.1:17444540-17444559 | MS.gene08389:CDS | 65.0% | |
| GCAACTGCTGCTGCTGCTGC+TGG | - | chr4.1:17444159-17444178 | MS.gene08389:CDS | 65.0% | |
| GCAGCAGCAGCAGCAGTTGC+CGG | + | chr4.1:17444159-17444178 | None:intergenic | 65.0% | |
| GCCGTTTCCCTTCCTGCGCT+TGG | + | chr4.1:17445051-17445070 | None:intergenic | 65.0% | |
| GCGGCCGGTTGTCATCTGGA+AGG | - | chr4.1:17445285-17445304 | MS.gene08389:intron | 65.0% | |
| GCAGCAGCAGCAGTTGCCGG+TGG | + | chr4.1:17444156-17444175 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 17442762 | 17445934 | 17442762 | ID=MS.gene08389 |
| chr4.1 | mRNA | 17442762 | 17445934 | 17442762 | ID=MS.gene08389.t1;Parent=MS.gene08389 |
| chr4.1 | exon | 17445809 | 17445934 | 17445809 | ID=MS.gene08389.t1.exon1;Parent=MS.gene08389.t1 |
| chr4.1 | CDS | 17445809 | 17445934 | 17445809 | ID=cds.MS.gene08389.t1;Parent=MS.gene08389.t1 |
| chr4.1 | exon | 17444701 | 17444811 | 17444701 | ID=MS.gene08389.t1.exon2;Parent=MS.gene08389.t1 |
| chr4.1 | CDS | 17444701 | 17444811 | 17444701 | ID=cds.MS.gene08389.t1;Parent=MS.gene08389.t1 |
| chr4.1 | exon | 17442762 | 17444567 | 17442762 | ID=MS.gene08389.t1.exon3;Parent=MS.gene08389.t1 |
| chr4.1 | CDS | 17442762 | 17444567 | 17442762 | ID=cds.MS.gene08389.t1;Parent=MS.gene08389.t1 |
| Gene Sequence |
| Protein sequence |
