Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08411.t1 | XP_013457399.1 | 98.6 | 486 | 7 | 0 | 1 | 486 | 1 | 486 | 4.50E-268 | 933.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08411.t1 | Q8GX46 | 36.1 | 502 | 214 | 11 | 11 | 482 | 1 | 425 | 1.8e-68 | 261.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08411.t1 | G8A1V6 | 98.6 | 486 | 7 | 0 | 1 | 486 | 1 | 486 | 3.2e-268 | 933.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08411.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08411.t1 | MTR_4g094762 | 98.765 | 486 | 6 | 0 | 1 | 486 | 1 | 486 | 0.0 | 997 |
| MS.gene08411.t1 | MTR_1g056700 | 85.714 | 49 | 7 | 0 | 272 | 320 | 11 | 59 | 1.71e-21 | 89.0 |
| MS.gene08411.t1 | MTR_3g498695 | 28.643 | 199 | 129 | 5 | 278 | 470 | 285 | 476 | 3.07e-16 | 81.6 |
| MS.gene08411.t1 | MTR_3g498695 | 28.500 | 200 | 129 | 6 | 278 | 470 | 285 | 477 | 7.66e-15 | 77.0 |
| MS.gene08411.t1 | MTR_0194s0050 | 24.500 | 200 | 134 | 3 | 293 | 477 | 186 | 383 | 2.30e-12 | 68.9 |
| MS.gene08411.t1 | MTR_1g072320 | 30.872 | 149 | 85 | 4 | 293 | 433 | 471 | 609 | 4.24e-12 | 68.9 |
| MS.gene08411.t1 | MTR_8g024790 | 28.049 | 164 | 83 | 5 | 293 | 443 | 292 | 433 | 6.47e-12 | 67.8 |
| MS.gene08411.t1 | MTR_7g083900 | 24.468 | 188 | 129 | 4 | 291 | 470 | 285 | 467 | 2.39e-11 | 66.2 |
| MS.gene08411.t1 | MTR_7g083900 | 24.339 | 189 | 129 | 4 | 291 | 470 | 285 | 468 | 3.02e-11 | 65.9 |
| MS.gene08411.t1 | MTR_8g067280 | 31.579 | 171 | 110 | 3 | 293 | 460 | 463 | 629 | 3.71e-11 | 65.9 |
| MS.gene08411.t1 | MTR_5g030430 | 29.630 | 189 | 117 | 5 | 293 | 471 | 494 | 676 | 9.12e-11 | 64.7 |
| MS.gene08411.t1 | MTR_8g024770 | 30.968 | 155 | 93 | 6 | 293 | 443 | 280 | 424 | 9.85e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08411.t1 | AT2G31210 | 36.187 | 514 | 195 | 12 | 11 | 481 | 1 | 424 | 4.95e-90 | 281 |
| MS.gene08411.t1 | AT2G31220 | 36.257 | 513 | 209 | 15 | 16 | 481 | 2 | 443 | 2.97e-82 | 262 |
| MS.gene08411.t1 | AT2G31220 | 36.257 | 513 | 209 | 15 | 16 | 481 | 13 | 454 | 3.98e-82 | 262 |
| MS.gene08411.t1 | AT1G06170 | 37.423 | 489 | 201 | 17 | 11 | 480 | 6 | 408 | 5.05e-82 | 260 |
| MS.gene08411.t1 | AT1G06170 | 37.423 | 489 | 201 | 17 | 11 | 480 | 6 | 408 | 5.05e-82 | 260 |
| MS.gene08411.t1 | AT2G31215 | 50.704 | 71 | 35 | 0 | 284 | 354 | 15 | 85 | 1.02e-14 | 71.2 |
| MS.gene08411.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene08411.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene08411.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene08411.t1 | AT3G26744 | 27.976 | 168 | 111 | 3 | 291 | 453 | 306 | 468 | 4.11e-12 | 68.6 |
| MS.gene08411.t1 | AT1G32640 | 29.592 | 196 | 102 | 7 | 261 | 437 | 410 | 588 | 4.14e-12 | 68.9 |
| MS.gene08411.t1 | AT1G12860 | 27.439 | 164 | 113 | 3 | 291 | 453 | 266 | 424 | 6.35e-12 | 67.8 |
| MS.gene08411.t1 | AT3G24140 | 25.000 | 204 | 130 | 5 | 293 | 477 | 199 | 398 | 6.67e-12 | 67.8 |
| MS.gene08411.t1 | AT3G24140 | 25.000 | 204 | 130 | 5 | 293 | 477 | 199 | 398 | 8.16e-12 | 67.4 |
| MS.gene08411.t1 | AT5G46760 | 34.459 | 148 | 85 | 4 | 293 | 437 | 416 | 554 | 1.92e-11 | 66.6 |
| MS.gene08411.t1 | AT1G12860 | 29.054 | 148 | 99 | 3 | 291 | 437 | 266 | 408 | 2.08e-11 | 66.2 |
Find 129 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCATTGAATTATGAAAAT+TGG | 0.123720 | 4.1:-17726053 | None:intergenic |
| GATGGAGGGAGATGGGGATA+TGG | 0.225091 | 4.1:+17726264 | MS.gene08411:CDS |
| GACATCAACCTCACTGTCTT+TGG | 0.255758 | 4.1:-17726918 | None:intergenic |
| GATACACTTCTTGTACTAAA+TGG | 0.260683 | 4.1:-17725775 | None:intergenic |
| GTTGTTTGTGTTGTTATCAT+TGG | 0.285682 | 4.1:-17725567 | None:intergenic |
| GGACCCTAGTGTTCAGGATA+TGG | 0.288747 | 4.1:+17725811 | MS.gene08411:CDS |
| GCTGTTTGTGTCCAAGGTTT+TGG | 0.309859 | 4.1:+17727000 | MS.gene08411:CDS |
| GTCATTGAATTATGAAAATT+GGG | 0.338556 | 4.1:-17726052 | None:intergenic |
| AGTGAATGAACTGAAATTAT+TGG | 0.342875 | 4.1:+17726763 | MS.gene08411:CDS |
| AGGGATTGTAGCTTTGGTTA+TGG | 0.348857 | 4.1:-17725904 | None:intergenic |
| TTGGAACTTCATCATGTTGC+AGG | 0.351895 | 4.1:+17727034 | MS.gene08411:CDS |
| CAGATAGTTGGTGATGTTCT+TGG | 0.359747 | 4.1:-17725847 | None:intergenic |
| CAAAACATGCATGAACAAAA+TGG | 0.364773 | 4.1:+17725500 | MS.gene08411:CDS |
| AGCTGTAACATAAAGCCTTT+TGG | 0.367904 | 4.1:+17726851 | MS.gene08411:CDS |
| TTGTTTACCTTGGTGGGACT+TGG | 0.369352 | 4.1:-17726421 | None:intergenic |
| CTCCACAGCCTCCAGCTCTC+AGG | 0.376170 | 4.1:+17726161 | MS.gene08411:CDS |
| ATTGAACAACAACAAAATCT+TGG | 0.381255 | 4.1:+17725716 | MS.gene08411:CDS |
| ATGGAGGGAGATGGGGATAT+GGG | 0.387229 | 4.1:+17726265 | MS.gene08411:CDS |
| GTGATGAGATGGAGGGAGAT+GGG | 0.388952 | 4.1:+17726257 | MS.gene08411:CDS |
| TGGGAGTGCTGGAATTCAAT+AGG | 0.389828 | 4.1:+17726284 | MS.gene08411:CDS |
| ATGGTTATCCATGTTGTTGT+AGG | 0.394415 | 4.1:-17725756 | None:intergenic |
| TGGTCGAGGGATTGTAGCTT+TGG | 0.400036 | 4.1:-17725910 | None:intergenic |
| GATGTTTCCACTTATACAAA+TGG | 0.405425 | 4.1:+17725671 | MS.gene08411:CDS |
| CAACAGGGTGATTGATGTTA+TGG | 0.412367 | 4.1:+17727237 | MS.gene08411:CDS |
| TTTCTTGGAGACCTTCCAAT+AGG | 0.414923 | 4.1:+17726076 | MS.gene08411:CDS |
| CAAAATCTTGGTTTGAACAT+AGG | 0.414981 | 4.1:+17725728 | MS.gene08411:CDS |
| TTTCTCAGTTGCAAAATGTT+TGG | 0.419556 | 4.1:-17726347 | None:intergenic |
| TTGTTTGTGTTGTTATCATT+GGG | 0.420602 | 4.1:-17725566 | None:intergenic |
| TTGCTTGCTGTTTGTGTCCA+AGG | 0.421896 | 4.1:+17726994 | MS.gene08411:CDS |
| AAAATCTTGGTTTGAACATA+GGG | 0.427616 | 4.1:+17725729 | MS.gene08411:CDS |
| TCCCTGAGAGCTGGAGGCTG+TGG | 0.430359 | 4.1:-17726163 | None:intergenic |
| ACACCTTCATCCATTGTGTT+GGG | 0.431032 | 4.1:-17725533 | None:intergenic |
| GAGTTGGGACCCTAGTGTTC+AGG | 0.436779 | 4.1:+17725805 | MS.gene08411:CDS |
| GATATTGTTGTTCAGATAGT+TGG | 0.438953 | 4.1:-17725859 | None:intergenic |
| GGTGATGAGATGGAGGGAGA+TGG | 0.442415 | 4.1:+17726256 | MS.gene08411:CDS |
| ATGCAAGTGCTATAGCCAAC+AGG | 0.446313 | 4.1:+17727221 | MS.gene08411:CDS |
| GAGGTTCTTATACTTCCATC+TGG | 0.453935 | 4.1:-17726878 | None:intergenic |
| GTGTTGTCTGATGATCCTAT+TGG | 0.454473 | 4.1:-17726091 | None:intergenic |
| AGTGAATCCATTTGTATAAG+TGG | 0.457197 | 4.1:-17725678 | None:intergenic |
| AGATGGGGATATGGGAGTGC+TGG | 0.457752 | 4.1:+17726273 | MS.gene08411:CDS |
| ATGCCAACCAACTCGAGAAA+TGG | 0.461019 | 4.1:+17726217 | MS.gene08411:CDS |
| AAGAGAACCATTTCTCGAGT+TGG | 0.464839 | 4.1:-17726224 | None:intergenic |
| ATAGCAATGAGTTCAGGTTC+AGG | 0.465445 | 4.1:+17725470 | None:intergenic |
| AACACCTTCATCCATTGTGT+TGG | 0.467861 | 4.1:-17725534 | None:intergenic |
| CAAAGAAGAGAGCAATTGAA+TGG | 0.475530 | 4.1:+17726370 | MS.gene08411:CDS |
| TAACATCATCATCGATAATC+CGG | 0.477440 | 4.1:-17726940 | None:intergenic |
| AATTATTGGTGGAGAAGAAA+AGG | 0.486241 | 4.1:+17726777 | MS.gene08411:CDS |
| TTATTGTTGTTTACCTTGGT+GGG | 0.486440 | 4.1:-17726427 | None:intergenic |
| TGGAGAAGAAAAGGCATGGA+AGG | 0.486907 | 4.1:+17726786 | MS.gene08411:CDS |
| CAAACTGTTTCAGAGGAAGA+AGG | 0.489618 | 4.1:+17726967 | MS.gene08411:CDS |
| AGTTGGGTTTGTCATGCAAA+TGG | 0.490408 | 4.1:-17726020 | None:intergenic |
| TTTATTGTTGTTTACCTTGG+TGG | 0.495717 | 4.1:-17726428 | None:intergenic |
| GCTTCTGTTGGCAAAGGAAG+AGG | 0.497466 | 4.1:+17726313 | MS.gene08411:CDS |
| TGGTGGAGGTGATGAGATGG+AGG | 0.498303 | 4.1:+17726249 | MS.gene08411:CDS |
| CTTCCATCTGGATCACCAAA+AGG | 0.498543 | 4.1:-17726866 | None:intergenic |
| GGGAGTGCTGGAATTCAATA+GGG | 0.499086 | 4.1:+17726285 | MS.gene08411:CDS |
| GGAAGGTTCAAAGGATATAG+AGG | 0.514568 | 4.1:-17726139 | None:intergenic |
| TTGAGAAGGTTAAGGACATC+CGG | 0.515412 | 4.1:-17725956 | None:intergenic |
| AGACAAATAGCAATGAGTTC+AGG | 0.516206 | 4.1:+17725464 | None:intergenic |
| CTGAGAGCTGGAGGCTGTGG+AGG | 0.518825 | 4.1:-17726160 | None:intergenic |
| TGTTTACCTTGGTGGGACTT+GGG | 0.518905 | 4.1:-17726420 | None:intergenic |
| AGTGTATCAGAACTCGAGTT+GGG | 0.519237 | 4.1:+17725790 | MS.gene08411:CDS |
| AGCATCTAGGTAAGTTGAGA+AGG | 0.519406 | 4.1:-17725970 | None:intergenic |
| GACTACAGCCTACTTATATG+TGG | 0.520235 | 4.1:-17727283 | None:intergenic |
| TCCACAGCCTCCAGCTCTCA+GGG | 0.522645 | 4.1:+17726162 | MS.gene08411:CDS |
| AGACCCTCATTACCCTTCAC+CGG | 0.523695 | 4.1:+17725937 | MS.gene08411:CDS |
| TAGTTTCTTGTTCAATAGCA+AGG | 0.524699 | 4.1:+17727078 | MS.gene08411:CDS |
| TGATGAGATGGAGGGAGATG+GGG | 0.524823 | 4.1:+17726258 | MS.gene08411:CDS |
| GAGCTGGAGGCTGTGGAGGA+AGG | 0.524927 | 4.1:-17726156 | None:intergenic |
| AATAGGGTCACTGCTTCTGT+TGG | 0.528001 | 4.1:+17726301 | MS.gene08411:CDS |
| TGAAACAATTCCCTGAGAGC+TGG | 0.529234 | 4.1:-17726172 | None:intergenic |
| GAATTTCAAGCCTTCTGTAG+AGG | 0.532912 | 4.1:+17725607 | MS.gene08411:CDS |
| CTGAAGTTCATCCAAAACCT+TGG | 0.538751 | 4.1:-17727011 | None:intergenic |
| GGCTGTGGAGGAAGGTTCAA+AGG | 0.549237 | 4.1:-17726148 | None:intergenic |
| TAGGTAAGTTGAGAAGGTTA+AGG | 0.550958 | 4.1:-17725964 | None:intergenic |
| ATGAGGGTCTAGAATGGTCG+AGG | 0.552417 | 4.1:-17725924 | None:intergenic |
| CAGGTCTTCCACATATAAGT+AGG | 0.553461 | 4.1:+17727275 | MS.gene08411:CDS |
| ACATCCGGTGAAGGGTAATG+AGG | 0.553656 | 4.1:-17725941 | None:intergenic |
| GATCCCAACACAATGGATGA+AGG | 0.553830 | 4.1:+17725530 | MS.gene08411:CDS |
| GAACCATTTCTCGAGTTGGT+TGG | 0.554382 | 4.1:-17726220 | None:intergenic |
| TTTGTCATGCAAATGGTGGA+TGG | 0.555450 | 4.1:-17726013 | None:intergenic |
| TGGAAAGTACAAAATCTTGA+GGG | 0.560743 | 4.1:+17726390 | MS.gene08411:CDS |
| GGAGAAGAAAAGGCATGGAA+GGG | 0.561748 | 4.1:+17726787 | MS.gene08411:CDS |
| AGGTTAAGGACATCCGGTGA+AGG | 0.563045 | 4.1:-17725950 | None:intergenic |
| TAATCCATATCCTGAACACT+AGG | 0.565325 | 4.1:-17725815 | None:intergenic |
| AAGACAGTGAGGTTGATGTC+CGG | 0.567804 | 4.1:+17726921 | MS.gene08411:CDS |
| ATGGAAAGTACAAAATCTTG+AGG | 0.570741 | 4.1:+17726389 | MS.gene08411:CDS |
| CATGTTGCAGGTGGACATGT+TGG | 0.572375 | 4.1:+17727046 | MS.gene08411:CDS |
| TTACAATCAAACTGTTTCAG+AGG | 0.573969 | 4.1:+17726960 | MS.gene08411:CDS |
| ATTGAATTATGAAAATTGGG+TGG | 0.575295 | 4.1:-17726049 | None:intergenic |
| TCACTGATGCAGGTAAATGA+AGG | 0.575350 | 4.1:+17727187 | MS.gene08411:intron |
| AGCAAAGATGAAGAGCATCT+AGG | 0.580041 | 4.1:-17725983 | None:intergenic |
| GTCACTGCTTCTGTTGGCAA+AGG | 0.580434 | 4.1:+17726307 | MS.gene08411:CDS |
| ACTGATAGAGCATCAGTGGT+TGG | 0.582304 | 4.1:+17726704 | MS.gene08411:CDS |
| AACAATTCCCTGAGAGCTGG+AGG | 0.583698 | 4.1:-17726169 | None:intergenic |
| TTGGTGGAGAAGAAAAGGCA+TGG | 0.589624 | 4.1:+17726782 | MS.gene08411:CDS |
| ATGGACACACAATATGCAGC+AGG | 0.590966 | 4.1:+17727256 | MS.gene08411:CDS |
| AGGGTAATGAGGGTCTAGAA+TGG | 0.594794 | 4.1:-17725930 | None:intergenic |
| GAATGAACTGAAATTATTGG+TGG | 0.601922 | 4.1:+17726766 | MS.gene08411:CDS |
| AAGTGTATCAGAACTCGAGT+TGG | 0.603471 | 4.1:+17725789 | MS.gene08411:CDS |
| TTGTTCAATGTCTACTGATG+AGG | 0.603690 | 4.1:-17725702 | None:intergenic |
| GGATTTCCTCTGCAGCCATG+AGG | 0.604351 | 4.1:-17726897 | None:intergenic |
| TATAAGTGGAAACATCATCA+AGG | 0.606570 | 4.1:-17725664 | None:intergenic |
| GGTTAAGGACATCCGGTGAA+GGG | 0.607008 | 4.1:-17725949 | None:intergenic |
| TAAGAACCTCATGGCTGCAG+AGG | 0.607611 | 4.1:+17726891 | MS.gene08411:CDS |
| GAACTTCATCATGTTGCAGG+TGG | 0.610349 | 4.1:+17727037 | MS.gene08411:CDS |
| CATAACATCAATCACCCTGT+TGG | 0.611438 | 4.1:-17727236 | None:intergenic |
| CATCCGGTGAAGGGTAATGA+GGG | 0.612093 | 4.1:-17725940 | None:intergenic |
| AGACAACACAAGCGGATCAT+CGG | 0.616516 | 4.1:+17726105 | MS.gene08411:CDS |
| TGGGTTTGTCATGCAAATGG+TGG | 0.620066 | 4.1:-17726017 | None:intergenic |
| GCAGACTGATAGAGCATCAG+TGG | 0.620695 | 4.1:+17726700 | MS.gene08411:intron |
| TGTTCAATGTCTACTGATGA+GGG | 0.621545 | 4.1:-17725701 | None:intergenic |
| AAGGCTTGAAATTCTCGTCA+AGG | 0.622448 | 4.1:-17725598 | None:intergenic |
| TAAGGTAGTTCCTCTACAGA+AGG | 0.625311 | 4.1:-17725617 | None:intergenic |
| TGTCTGATGATCCTATTGGA+AGG | 0.634988 | 4.1:-17726087 | None:intergenic |
| GGTGGAGGTGATGAGATGGA+GGG | 0.640062 | 4.1:+17726250 | MS.gene08411:CDS |
| TGCAAGTGCTATAGCCAACA+GGG | 0.647996 | 4.1:+17727222 | MS.gene08411:CDS |
| TCTGTTGGCAAAGGAAGAGG+AGG | 0.650064 | 4.1:+17726316 | MS.gene08411:CDS |
| ATGGAAGTATAAGAACCTCA+TGG | 0.653640 | 4.1:+17726882 | MS.gene08411:CDS |
| AATCCATATCCTGAACACTA+GGG | 0.654503 | 4.1:-17725814 | None:intergenic |
| ACAATATCAACAATTTATCG+AGG | 0.665388 | 4.1:+17725874 | MS.gene08411:CDS |
| TTGTTTCAATCTCTGCCTCG+AGG | 0.665573 | 4.1:+17726187 | MS.gene08411:CDS |
| GGATCATCAGACAACACAAG+CGG | 0.678009 | 4.1:+17726097 | MS.gene08411:CDS |
| AGGGAATACCTACAACAACA+TGG | 0.679432 | 4.1:+17725748 | MS.gene08411:CDS |
| TTGCTTTGATCCCAACACAA+TGG | 0.687353 | 4.1:+17725523 | MS.gene08411:CDS |
| TCTCATCCCAAGTCCCACCA+AGG | 0.687512 | 4.1:+17726414 | MS.gene08411:CDS |
| TGAGGGTCTAGAATGGTCGA+GGG | 0.709529 | 4.1:-17725923 | None:intergenic |
| GAGGAAATCCAAAGACAGTG+AGG | 0.714492 | 4.1:+17726910 | MS.gene08411:CDS |
| GTTGGCATGCTATAGCCTCG+AGG | 0.726151 | 4.1:-17726202 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAAATTACATTTTTAG+TGG | + | chr4.1:17726607-17726626 | MS.gene08411:intron | 10.0% |
| !! | TAGAATTATTACATTTGATT+TGG | + | chr4.1:17727140-17727159 | MS.gene08411:intron | 15.0% |
| !! | TGGTTATATATTAAACTATA+AGG | + | chr4.1:17727160-17727179 | MS.gene08411:intron | 15.0% |
| !! | AGTCATTGAATTATGAAAAT+TGG | - | chr4.1:17726056-17726075 | None:intergenic | 20.0% |
| !! | GATTCAAAACATATATCAAT+TGG | - | chr4.1:17726523-17726542 | None:intergenic | 20.0% |
| !! | GTCATTGAATTATGAAAATT+GGG | - | chr4.1:17726055-17726074 | None:intergenic | 20.0% |
| !! | TTCATGGATAAAATTATACA+TGG | - | chr4.1:17726474-17726493 | None:intergenic | 20.0% |
| !! | TTGAATCTTGAATTATATTG+AGG | + | chr4.1:17726536-17726555 | MS.gene08411:intron | 20.0% |
| ! | ACAATATCAACAATTTATCG+AGG | + | chr4.1:17725874-17725893 | MS.gene08411:CDS | 25.0% |
| ! | AGTGAATGAACTGAAATTAT+TGG | + | chr4.1:17726763-17726782 | MS.gene08411:CDS | 25.0% |
| ! | ATTGAACAACAACAAAATCT+TGG | + | chr4.1:17725716-17725735 | MS.gene08411:CDS | 25.0% |
| ! | ATTGAATTATGAAAATTGGG+TGG | - | chr4.1:17726052-17726071 | None:intergenic | 25.0% |
| ! | CTATTTGATACCATGATTAA+CGG | + | chr4.1:17726661-17726680 | MS.gene08411:intron | 25.0% |
| ! | TATTTGATACCATGATTAAC+GGG | + | chr4.1:17726662-17726681 | MS.gene08411:intron | 25.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | + | chr4.1:17725729-17725748 | MS.gene08411:CDS | 25.0% |
| !! | CATAATTCAATGACTTTTCT+TGG | + | chr4.1:17726061-17726080 | MS.gene08411:CDS | 25.0% |
| !! | TTGTTTGTGTTGTTATCATT+GGG | - | chr4.1:17725569-17725588 | None:intergenic | 25.0% |
| !!! | ATGTTTATTGTTGTTTACCT+TGG | - | chr4.1:17726434-17726453 | None:intergenic | 25.0% |
| AATTATTGGTGGAGAAGAAA+AGG | + | chr4.1:17726777-17726796 | MS.gene08411:CDS | 30.0% | |
| AGTGAATCCATTTGTATAAG+TGG | - | chr4.1:17725681-17725700 | None:intergenic | 30.0% | |
| CAAAACATGCATGAACAAAA+TGG | + | chr4.1:17725500-17725519 | MS.gene08411:CDS | 30.0% | |
| GAATGAACTGAAATTATTGG+TGG | + | chr4.1:17726766-17726785 | MS.gene08411:CDS | 30.0% | |
| GATACACTTCTTGTACTAAA+TGG | - | chr4.1:17725778-17725797 | None:intergenic | 30.0% | |
| GATGTTTCCACTTATACAAA+TGG | + | chr4.1:17725671-17725690 | MS.gene08411:CDS | 30.0% | |
| TAACATCATCATCGATAATC+CGG | - | chr4.1:17726943-17726962 | None:intergenic | 30.0% | |
| TAGTTTCTTGTTCAATAGCA+AGG | + | chr4.1:17727078-17727097 | MS.gene08411:CDS | 30.0% | |
| TATAAGTGGAAACATCATCA+AGG | - | chr4.1:17725667-17725686 | None:intergenic | 30.0% | |
| TCAAATAGAGATTCAAATCG+TGG | - | chr4.1:17726649-17726668 | None:intergenic | 30.0% | |
| TTACAATCAAACTGTTTCAG+AGG | + | chr4.1:17726960-17726979 | MS.gene08411:CDS | 30.0% | |
| TTTCTCAGTTGCAAAATGTT+TGG | - | chr4.1:17726350-17726369 | None:intergenic | 30.0% | |
| ! | ATGGAAAGTACAAAATCTTG+AGG | + | chr4.1:17726389-17726408 | MS.gene08411:CDS | 30.0% |
| ! | CAAAATCTTGGTTTGAACAT+AGG | + | chr4.1:17725728-17725747 | MS.gene08411:CDS | 30.0% |
| ! | GATATTGTTGTTCAGATAGT+TGG | - | chr4.1:17725862-17725881 | None:intergenic | 30.0% |
| ! | GTTGTTTGTGTTGTTATCAT+TGG | - | chr4.1:17725570-17725589 | None:intergenic | 30.0% |
| ! | TGGAAAGTACAAAATCTTGA+GGG | + | chr4.1:17726390-17726409 | MS.gene08411:CDS | 30.0% |
| !! | GAATTTTGATGATTGTGGTA+AGG | - | chr4.1:17725638-17725657 | None:intergenic | 30.0% |
| !! | GTTGTGAATTTTGATGATTG+TGG | - | chr4.1:17725643-17725662 | None:intergenic | 30.0% |
| !! | TTATTGTTGTTTACCTTGGT+GGG | - | chr4.1:17726430-17726449 | None:intergenic | 30.0% |
| !! | TTTATTGTTGTTTACCTTGG+TGG | - | chr4.1:17726431-17726450 | None:intergenic | 30.0% |
| AATCCATATCCTGAACACTA+GGG | - | chr4.1:17725817-17725836 | None:intergenic | 35.0% | |
| ATCAATTGGCAACAGAAAAG+TGG | - | chr4.1:17726509-17726528 | None:intergenic | 35.0% | |
| ATGGTTATCCATGTTGTTGT+AGG | - | chr4.1:17725759-17725778 | None:intergenic | 35.0% | |
| CAAAGAAGAGAGCAATTGAA+TGG | + | chr4.1:17726370-17726389 | MS.gene08411:CDS | 35.0% | |
| TAATCCATATCCTGAACACT+AGG | - | chr4.1:17725818-17725837 | None:intergenic | 35.0% | |
| TAGAGATTCAAATCGTGGAA+CGG | - | chr4.1:17726644-17726663 | None:intergenic | 35.0% | |
| TGTTCAATGTCTACTGATGA+GGG | - | chr4.1:17725704-17725723 | None:intergenic | 35.0% | |
| TTCTTGTTCAATAGCAAGGT+TGG | + | chr4.1:17727082-17727101 | MS.gene08411:intron | 35.0% | |
| TTGTTCAATGTCTACTGATG+AGG | - | chr4.1:17725705-17725724 | None:intergenic | 35.0% | |
| ! | AGAAATGGTTCTCTTTTTGG+TGG | + | chr4.1:17726232-17726251 | MS.gene08411:CDS | 35.0% |
| ! | AGCTGTAACATAAAGCCTTT+TGG | + | chr4.1:17726851-17726870 | MS.gene08411:CDS | 35.0% |
| ! | ATGGAAGTATAAGAACCTCA+TGG | + | chr4.1:17726882-17726901 | MS.gene08411:CDS | 35.0% |
| ! | TAGGTAAGTTGAGAAGGTTA+AGG | - | chr4.1:17725967-17725986 | None:intergenic | 35.0% |
| ! | TCGAGAAATGGTTCTCTTTT+TGG | + | chr4.1:17726229-17726248 | MS.gene08411:CDS | 35.0% |
| !! | AAATTGGGTGGATTTTGAGT+TGG | - | chr4.1:17726040-17726059 | None:intergenic | 35.0% |
| !!! | AATTGGGTGGATTTTGAGTT+GGG | - | chr4.1:17726039-17726058 | None:intergenic | 35.0% |
| AACACCTTCATCCATTGTGT+TGG | - | chr4.1:17725537-17725556 | None:intergenic | 40.0% | |
| AAGAGAACCATTTCTCGAGT+TGG | - | chr4.1:17726227-17726246 | None:intergenic | 40.0% | |
| AAGGCTTGAAATTCTCGTCA+AGG | - | chr4.1:17725601-17725620 | None:intergenic | 40.0% | |
| AAGTGTATCAGAACTCGAGT+TGG | + | chr4.1:17725789-17725808 | MS.gene08411:CDS | 40.0% | |
| ACACCTTCATCCATTGTGTT+GGG | - | chr4.1:17725536-17725555 | None:intergenic | 40.0% | |
| AGGGAATACCTACAACAACA+TGG | + | chr4.1:17725748-17725767 | MS.gene08411:CDS | 40.0% | |
| AGTGTATCAGAACTCGAGTT+GGG | + | chr4.1:17725790-17725809 | MS.gene08411:CDS | 40.0% | |
| AGTTGGGTTTGTCATGCAAA+TGG | - | chr4.1:17726023-17726042 | None:intergenic | 40.0% | |
| ATAAGGTGTATCACTGATGC+AGG | + | chr4.1:17727177-17727196 | MS.gene08411:intron | 40.0% | |
| CAAACTGTTTCAGAGGAAGA+AGG | + | chr4.1:17726967-17726986 | MS.gene08411:CDS | 40.0% | |
| CAACAGGGTGATTGATGTTA+TGG | + | chr4.1:17727237-17727256 | MS.gene08411:CDS | 40.0% | |
| CAGGTCTTCCACATATAAGT+AGG | + | chr4.1:17727275-17727294 | MS.gene08411:CDS | 40.0% | |
| CATAACATCAATCACCCTGT+TGG | - | chr4.1:17727239-17727258 | None:intergenic | 40.0% | |
| CTGAAGTTCATCCAAAACCT+TGG | - | chr4.1:17727014-17727033 | None:intergenic | 40.0% | |
| GAATTTCAAGCCTTCTGTAG+AGG | + | chr4.1:17725607-17725626 | MS.gene08411:CDS | 40.0% | |
| GAGGTTCTTATACTTCCATC+TGG | - | chr4.1:17726881-17726900 | None:intergenic | 40.0% | |
| GGAAGGTTCAAAGGATATAG+AGG | - | chr4.1:17726142-17726161 | None:intergenic | 40.0% | |
| GTGTTGTCTGATGATCCTAT+TGG | - | chr4.1:17726094-17726113 | None:intergenic | 40.0% | |
| TAAGGTAGTTCCTCTACAGA+AGG | - | chr4.1:17725620-17725639 | None:intergenic | 40.0% | |
| TCACTGATGCAGGTAAATGA+AGG | + | chr4.1:17727187-17727206 | MS.gene08411:intron | 40.0% | |
| TGTCTGATGATCCTATTGGA+AGG | - | chr4.1:17726090-17726109 | None:intergenic | 40.0% | |
| TTGAGAAGGTTAAGGACATC+CGG | - | chr4.1:17725959-17725978 | None:intergenic | 40.0% | |
| TTGCTTTGATCCCAACACAA+TGG | + | chr4.1:17725523-17725542 | MS.gene08411:CDS | 40.0% | |
| TTGGAACTTCATCATGTTGC+AGG | + | chr4.1:17727034-17727053 | MS.gene08411:CDS | 40.0% | |
| TTTCTTGGAGACCTTCCAAT+AGG | + | chr4.1:17726076-17726095 | MS.gene08411:CDS | 40.0% | |
| ! | AGCATCTAGGTAAGTTGAGA+AGG | - | chr4.1:17725973-17725992 | None:intergenic | 40.0% |
| ! | TTTGTCATGCAAATGGTGGA+TGG | - | chr4.1:17726016-17726035 | None:intergenic | 40.0% |
| !! | AATGGTTCTCTTTTTGGTGG+AGG | + | chr4.1:17726235-17726254 | MS.gene08411:CDS | 40.0% |
| !! | AGCAAAGATGAAGAGCATCT+AGG | - | chr4.1:17725986-17726005 | None:intergenic | 40.0% |
| !! | AGGGATTGTAGCTTTGGTTA+TGG | - | chr4.1:17725907-17725926 | None:intergenic | 40.0% |
| !! | CAGATAGTTGGTGATGTTCT+TGG | - | chr4.1:17725850-17725869 | None:intergenic | 40.0% |
| !!! | GGTTTTGGATGAACTTCAGT+TGG | + | chr4.1:17727015-17727034 | MS.gene08411:CDS | 40.0% |
| AATAGGGTCACTGCTTCTGT+TGG | + | chr4.1:17726301-17726320 | MS.gene08411:CDS | 45.0% | |
| AGACAACACAAGCGGATCAT+CGG | + | chr4.1:17726105-17726124 | MS.gene08411:CDS | 45.0% | |
| AGGGTAATGAGGGTCTAGAA+TGG | - | chr4.1:17725933-17725952 | None:intergenic | 45.0% | |
| ATGCAAGTGCTATAGCCAAC+AGG | + | chr4.1:17727221-17727240 | MS.gene08411:CDS | 45.0% | |
| ATGCCAACCAACTCGAGAAA+TGG | + | chr4.1:17726217-17726236 | MS.gene08411:CDS | 45.0% | |
| ATGGACACACAATATGCAGC+AGG | + | chr4.1:17727256-17727275 | MS.gene08411:CDS | 45.0% | |
| ATTGGCAACAGAAAAGTGGC+TGG | - | chr4.1:17726505-17726524 | None:intergenic | 45.0% | |
| CCAAAACTGCCCGTTAATCA+TGG | - | chr4.1:17726674-17726693 | None:intergenic | 45.0% | |
| CTTCCATCTGGATCACCAAA+AGG | - | chr4.1:17726869-17726888 | None:intergenic | 45.0% | |
| GAACTTCATCATGTTGCAGG+TGG | + | chr4.1:17727037-17727056 | MS.gene08411:CDS | 45.0% | |
| GACATCAACCTCACTGTCTT+TGG | - | chr4.1:17726921-17726940 | None:intergenic | 45.0% | |
| GAGGAAATCCAAAGACAGTG+AGG | + | chr4.1:17726910-17726929 | MS.gene08411:CDS | 45.0% | |
| GATCCCAACACAATGGATGA+AGG | + | chr4.1:17725530-17725549 | MS.gene08411:CDS | 45.0% | |
| GGATCATCAGACAACACAAG+CGG | + | chr4.1:17726097-17726116 | MS.gene08411:CDS | 45.0% | |
| TGAAACAATTCCCTGAGAGC+TGG | - | chr4.1:17726175-17726194 | None:intergenic | 45.0% | |
| TGCAAGTGCTATAGCCAACA+GGG | + | chr4.1:17727222-17727241 | MS.gene08411:CDS | 45.0% | |
| TGGGTTTGTCATGCAAATGG+TGG | - | chr4.1:17726020-17726039 | None:intergenic | 45.0% | |
| TGTTTACCTTGGTGGGACTT+GGG | - | chr4.1:17726423-17726442 | None:intergenic | 45.0% | |
| TTGGTGGAGAAGAAAAGGCA+TGG | + | chr4.1:17726782-17726801 | MS.gene08411:CDS | 45.0% | |
| TTGTTTACCTTGGTGGGACT+TGG | - | chr4.1:17726424-17726443 | None:intergenic | 45.0% | |
| TTGTTTCAATCTCTGCCTCG+AGG | + | chr4.1:17726187-17726206 | MS.gene08411:CDS | 45.0% | |
| ! | ACTGATAGAGCATCAGTGGT+TGG | + | chr4.1:17726704-17726723 | MS.gene08411:CDS | 45.0% |
| ! | GCTGTTTGTGTCCAAGGTTT+TGG | + | chr4.1:17727000-17727019 | MS.gene08411:CDS | 45.0% |
| ! | GGAGAAGAAAAGGCATGGAA+GGG | + | chr4.1:17726787-17726806 | MS.gene08411:CDS | 45.0% |
| ! | TGGAGAAGAAAAGGCATGGA+AGG | + | chr4.1:17726786-17726805 | MS.gene08411:CDS | 45.0% |
| ! | TTTTGGTGGAGGTGATGAGA+TGG | + | chr4.1:17726246-17726265 | MS.gene08411:CDS | 45.0% |
| !! | AAGACAGTGAGGTTGATGTC+CGG | + | chr4.1:17726921-17726940 | MS.gene08411:CDS | 45.0% |
| !! | AAGCCTTTTGGTGATCCAGA+TGG | + | chr4.1:17726863-17726882 | MS.gene08411:CDS | 45.0% |
| !! | CCATGATTAACGGGCAGTTT+TGG | + | chr4.1:17726671-17726690 | MS.gene08411:intron | 45.0% |
| !! | GAACCATTTCTCGAGTTGGT+TGG | - | chr4.1:17726223-17726242 | None:intergenic | 45.0% |
| !! | GGGAGTGCTGGAATTCAATA+GGG | + | chr4.1:17726285-17726304 | MS.gene08411:CDS | 45.0% |
| !! | TGGGAGTGCTGGAATTCAAT+AGG | + | chr4.1:17726284-17726303 | MS.gene08411:CDS | 45.0% |
| !! | TTGCTTGCTGTTTGTGTCCA+AGG | + | chr4.1:17726994-17727013 | MS.gene08411:CDS | 45.0% |
| AACAATTCCCTGAGAGCTGG+AGG | - | chr4.1:17726172-17726191 | None:intergenic | 50.0% | |
| ACATCCGGTGAAGGGTAATG+AGG | - | chr4.1:17725944-17725963 | None:intergenic | 50.0% | |
| AGACCCTCATTACCCTTCAC+CGG | + | chr4.1:17725937-17725956 | MS.gene08411:CDS | 50.0% | |
| AGGTTAAGGACATCCGGTGA+AGG | - | chr4.1:17725953-17725972 | None:intergenic | 50.0% | |
| ATGGAGGGAGATGGGGATAT+GGG | + | chr4.1:17726265-17726284 | MS.gene08411:CDS | 50.0% | |
| CATCCGGTGAAGGGTAATGA+GGG | - | chr4.1:17725943-17725962 | None:intergenic | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | + | chr4.1:17727046-17727065 | MS.gene08411:CDS | 50.0% | |
| GCTTCTGTTGGCAAAGGAAG+AGG | + | chr4.1:17726313-17726332 | MS.gene08411:CDS | 50.0% | |
| GGACCCTAGTGTTCAGGATA+TGG | + | chr4.1:17725811-17725830 | MS.gene08411:CDS | 50.0% | |
| GGTTAAGGACATCCGGTGAA+GGG | - | chr4.1:17725952-17725971 | None:intergenic | 50.0% | |
| GTCACTGCTTCTGTTGGCAA+AGG | + | chr4.1:17726307-17726326 | MS.gene08411:CDS | 50.0% | |
| GTGATGAGATGGAGGGAGAT+GGG | + | chr4.1:17726257-17726276 | MS.gene08411:CDS | 50.0% | |
| GTGGCTGGTGACTCAATTCA+TGG | - | chr4.1:17726490-17726509 | None:intergenic | 50.0% | |
| TAAGAACCTCATGGCTGCAG+AGG | + | chr4.1:17726891-17726910 | MS.gene08411:CDS | 50.0% | |
| TCTGTTGGCAAAGGAAGAGG+AGG | + | chr4.1:17726316-17726335 | MS.gene08411:CDS | 50.0% | |
| TGATGAGATGGAGGGAGATG+GGG | + | chr4.1:17726258-17726277 | MS.gene08411:CDS | 50.0% | |
| TGGTCGAGGGATTGTAGCTT+TGG | - | chr4.1:17725913-17725932 | None:intergenic | 50.0% | |
| ! | ATGAGGGTCTAGAATGGTCG+AGG | - | chr4.1:17725927-17725946 | None:intergenic | 50.0% |
| ! | GCAGACTGATAGAGCATCAG+TGG | + | chr4.1:17726700-17726719 | MS.gene08411:intron | 50.0% |
| ! | TGAGGGTCTAGAATGGTCGA+GGG | - | chr4.1:17725926-17725945 | None:intergenic | 50.0% |
| GAGTTGGGACCCTAGTGTTC+AGG | + | chr4.1:17725805-17725824 | MS.gene08411:CDS | 55.0% | |
| GATGGAGGGAGATGGGGATA+TGG | + | chr4.1:17726264-17726283 | MS.gene08411:CDS | 55.0% | |
| GGATTTCCTCTGCAGCCATG+AGG | - | chr4.1:17726900-17726919 | None:intergenic | 55.0% | |
| GGCTGTGGAGGAAGGTTCAA+AGG | - | chr4.1:17726151-17726170 | None:intergenic | 55.0% | |
| GGTGATGAGATGGAGGGAGA+TGG | + | chr4.1:17726256-17726275 | MS.gene08411:CDS | 55.0% | |
| GGTGGAGGTGATGAGATGGA+GGG | + | chr4.1:17726250-17726269 | MS.gene08411:CDS | 55.0% | |
| GTTGGCATGCTATAGCCTCG+AGG | - | chr4.1:17726205-17726224 | None:intergenic | 55.0% | |
| TCTCATCCCAAGTCCCACCA+AGG | + | chr4.1:17726414-17726433 | MS.gene08411:CDS | 55.0% | |
| TGGTGGAGGTGATGAGATGG+AGG | + | chr4.1:17726249-17726268 | MS.gene08411:CDS | 55.0% | |
| ! | AGATGGGGATATGGGAGTGC+TGG | + | chr4.1:17726273-17726292 | MS.gene08411:CDS | 55.0% |
| TCCACAGCCTCCAGCTCTCA+GGG | + | chr4.1:17726162-17726181 | MS.gene08411:CDS | 60.0% | |
| CTCCACAGCCTCCAGCTCTC+AGG | + | chr4.1:17726161-17726180 | MS.gene08411:CDS | 65.0% | |
| CTGAGAGCTGGAGGCTGTGG+AGG | - | chr4.1:17726163-17726182 | None:intergenic | 65.0% | |
| GAGCTGGAGGCTGTGGAGGA+AGG | - | chr4.1:17726159-17726178 | None:intergenic | 65.0% | |
| TCCCTGAGAGCTGGAGGCTG+TGG | - | chr4.1:17726166-17726185 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 17725476 | 17727303 | 17725476 | ID=MS.gene08411 |
| chr4.1 | mRNA | 17725476 | 17727303 | 17725476 | ID=MS.gene08411.t1;Parent=MS.gene08411 |
| chr4.1 | exon | 17725476 | 17726435 | 17725476 | ID=MS.gene08411.t1.exon1;Parent=MS.gene08411.t1 |
| chr4.1 | CDS | 17725476 | 17726435 | 17725476 | ID=cds.MS.gene08411.t1;Parent=MS.gene08411.t1 |
| chr4.1 | exon | 17726704 | 17727099 | 17726704 | ID=MS.gene08411.t1.exon2;Parent=MS.gene08411.t1 |
| chr4.1 | CDS | 17726704 | 17727099 | 17726704 | ID=cds.MS.gene08411.t1;Parent=MS.gene08411.t1 |
| chr4.1 | exon | 17727199 | 17727303 | 17727199 | ID=MS.gene08411.t1.exon3;Parent=MS.gene08411.t1 |
| chr4.1 | CDS | 17727199 | 17727303 | 17727199 | ID=cds.MS.gene08411.t1;Parent=MS.gene08411.t1 |
| Gene Sequence |
| Protein sequence |
