Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08439.t1 | XP_003618393.2 | 73.7 | 156 | 8 | 1 | 4 | 126 | 94 | 249 | 5.60E-54 | 221.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08439.t1 | Q9LFQ3 | 52.6 | 156 | 37 | 4 | 4 | 126 | 83 | 234 | 6.7e-32 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08439.t1 | G7KJX2 | 73.7 | 156 | 8 | 1 | 4 | 126 | 94 | 249 | 4.0e-54 | 221.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08439.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08439.t1 | MTR_6g008970 | 73.718 | 156 | 8 | 1 | 4 | 126 | 94 | 249 | 3.62e-68 | 231 |
| MS.gene08439.t1 | MTR_6g008995 | 55.882 | 136 | 25 | 2 | 4 | 106 | 11 | 144 | 1.29e-38 | 141 |
| MS.gene08439.t1 | MTR_6g008995 | 55.882 | 136 | 25 | 2 | 4 | 106 | 68 | 201 | 2.58e-38 | 141 |
| MS.gene08439.t1 | MTR_5g036670 | 44.872 | 156 | 49 | 4 | 4 | 126 | 74 | 225 | 1.24e-30 | 122 |
| MS.gene08439.t1 | MTR_8g062700 | 46.154 | 156 | 48 | 3 | 4 | 126 | 73 | 225 | 5.41e-29 | 117 |
| MS.gene08439.t1 | MTR_8g062700 | 46.154 | 156 | 48 | 3 | 4 | 126 | 73 | 225 | 5.67e-29 | 117 |
| MS.gene08439.t1 | MTR_1g023820 | 42.520 | 127 | 46 | 5 | 6 | 132 | 20 | 119 | 2.24e-20 | 85.5 |
| MS.gene08439.t1 | MTR_5g055670 | 83.333 | 42 | 7 | 0 | 5 | 46 | 88 | 129 | 3.43e-16 | 74.3 |
| MS.gene08439.t1 | MTR_1g105960 | 62.222 | 45 | 17 | 0 | 4 | 48 | 32 | 76 | 6.50e-13 | 64.7 |
| MS.gene08439.t1 | MTR_0091s0080 | 33.065 | 124 | 67 | 1 | 127 | 234 | 133 | 256 | 1.28e-12 | 68.6 |
| MS.gene08439.t1 | MTR_4g133300 | 35.593 | 118 | 37 | 2 | 5 | 89 | 41 | 152 | 1.25e-11 | 63.9 |
| MS.gene08439.t1 | MTR_1g105955 | 38.739 | 111 | 42 | 4 | 4 | 88 | 47 | 157 | 2.73e-11 | 62.0 |
| MS.gene08439.t1 | MTR_4g133470 | 34.746 | 118 | 38 | 2 | 5 | 89 | 41 | 152 | 8.12e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08439.t1 | AT5G15020 | 52.564 | 156 | 37 | 4 | 4 | 126 | 83 | 234 | 5.87e-38 | 143 |
| MS.gene08439.t1 | AT5G15020 | 52.564 | 156 | 37 | 4 | 4 | 126 | 83 | 234 | 6.27e-38 | 143 |
| MS.gene08439.t1 | AT3G01320 | 51.282 | 156 | 40 | 3 | 4 | 126 | 88 | 240 | 1.69e-37 | 142 |
| MS.gene08439.t1 | AT3G01320 | 51.282 | 156 | 40 | 3 | 4 | 126 | 88 | 240 | 1.92e-37 | 142 |
| MS.gene08439.t1 | AT1G70060 | 46.296 | 162 | 43 | 4 | 4 | 128 | 45 | 199 | 1.10e-29 | 119 |
| MS.gene08439.t1 | AT1G70060 | 46.296 | 162 | 43 | 4 | 4 | 128 | 45 | 199 | 1.10e-29 | 119 |
| MS.gene08439.t1 | AT1G24190 | 51.200 | 125 | 28 | 1 | 4 | 95 | 45 | 169 | 7.20e-28 | 114 |
| MS.gene08439.t1 | AT1G24190 | 51.200 | 125 | 28 | 1 | 4 | 95 | 45 | 169 | 7.34e-28 | 114 |
| MS.gene08439.t1 | AT1G24190 | 51.200 | 125 | 28 | 1 | 4 | 95 | 45 | 169 | 8.01e-28 | 114 |
| MS.gene08439.t1 | AT1G59890 | 41.667 | 156 | 54 | 4 | 4 | 126 | 76 | 227 | 4.05e-23 | 100 |
| MS.gene08439.t1 | AT1G59890 | 41.667 | 156 | 54 | 4 | 4 | 126 | 76 | 227 | 4.12e-23 | 100 |
| MS.gene08439.t1 | AT1G59890 | 41.667 | 156 | 54 | 4 | 4 | 126 | 76 | 227 | 4.25e-23 | 100 |
| MS.gene08439.t1 | AT1G59890 | 41.667 | 156 | 54 | 4 | 4 | 126 | 76 | 227 | 4.49e-23 | 100 |
| MS.gene08439.t1 | AT1G70030 | 56.627 | 83 | 35 | 1 | 6 | 88 | 55 | 136 | 4.14e-22 | 90.5 |
| MS.gene08439.t1 | AT1G10450 | 43.651 | 126 | 35 | 3 | 8 | 99 | 68 | 191 | 1.59e-18 | 86.7 |
| MS.gene08439.t1 | AT1G10450 | 43.651 | 126 | 35 | 3 | 8 | 99 | 68 | 191 | 1.59e-18 | 86.7 |
| MS.gene08439.t1 | AT1G10450 | 43.651 | 126 | 35 | 3 | 8 | 99 | 119 | 242 | 1.99e-18 | 86.3 |
| MS.gene08439.t1 | AT1G24200 | 36.429 | 140 | 50 | 3 | 4 | 110 | 45 | 178 | 5.92e-16 | 75.5 |
| MS.gene08439.t1 | AT1G70030 | 40.870 | 115 | 35 | 2 | 6 | 88 | 44 | 157 | 6.89e-16 | 74.3 |
| MS.gene08439.t1 | AT1G70030 | 53.846 | 65 | 29 | 1 | 6 | 70 | 55 | 118 | 5.33e-14 | 68.2 |
| MS.gene08439.t1 | AT5G15025 | 73.333 | 45 | 11 | 1 | 4 | 47 | 78 | 122 | 1.01e-13 | 67.4 |
| MS.gene08439.t1 | AT5G35610 | 37.500 | 104 | 43 | 3 | 4 | 85 | 41 | 144 | 2.67e-11 | 61.2 |
Find 63 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTCCATGTGACTTAAAA+AGG | 0.145675 | 4.3:-16272893 | None:intergenic |
| CAATAGGAGATACGTGTTTC+AGG | 0.250900 | 4.3:+16275289 | MS.gene08439:CDS |
| GAAGAACAATACTGTGCTTT+TGG | 0.295335 | 4.3:+16275208 | MS.gene08439:CDS |
| ACAGTATTGTTCTTCTCTTC+AGG | 0.355732 | 4.3:-16275200 | None:intergenic |
| TCTAGTTCTTGCTGTTACTA+AGG | 0.363504 | 4.3:+16274196 | MS.gene08439:CDS |
| TTAAGTGCAGTGCAGATATA+AGG | 0.373213 | 4.3:-16275143 | None:intergenic |
| TCTCCTATTGGCACCGTCAA+TGG | 0.375094 | 4.3:-16275276 | None:intergenic |
| TTTGCATAATTAGAGGAGAT+TGG | 0.395079 | 4.3:+16275120 | MS.gene08439:intron |
| ATCTATCTGCGATTTGTTCG+TGG | 0.404590 | 4.3:+16274236 | MS.gene08439:CDS |
| AACCAGATACTCCCATGGTT+TGG | 0.407163 | 4.3:+16274986 | MS.gene08439:intron |
| TAATTTATCCTGCTCTTCAC+TGG | 0.416641 | 4.3:-16275335 | None:intergenic |
| CTCCTATTGGCACCGTCAAT+GGG | 0.420444 | 4.3:-16275275 | None:intergenic |
| CTGAAACACGTATCTCCTAT+TGG | 0.427555 | 4.3:-16275288 | None:intergenic |
| ACTAACCTGCGTGCTTTGTA+AGG | 0.428301 | 4.3:-16274161 | None:intergenic |
| TCCACACAGCATGCTCCATT+TGG | 0.429499 | 4.3:+16272963 | MS.gene08439:CDS |
| CTGCACTGCACTTAAGTTGA+AGG | 0.431243 | 4.3:+16275151 | MS.gene08439:CDS |
| TGATACTGACTTGGTTAAAC+AGG | 0.433767 | 4.3:+16274440 | MS.gene08439:CDS |
| TTCCAGTGTGCACTAGAACT+TGG | 0.437326 | 4.3:+16274414 | MS.gene08439:intron |
| TGCATTGAATTTCGACCAAA+TGG | 0.453988 | 4.3:-16272978 | None:intergenic |
| AGTGTTATCTCATATCCCTT+TGG | 0.473567 | 4.3:-16272531 | None:intergenic |
| GAAGGTGCTGAAGAATTATC+TGG | 0.476819 | 4.3:-16272942 | None:intergenic |
| AAGTCTCTGGTATGTAAGAT+TGG | 0.478389 | 4.3:+16274122 | MS.gene08439:CDS |
| TTCGTTGTCCAGTGAAGAGC+AGG | 0.484634 | 4.3:+16275327 | MS.gene08439:CDS |
| TACTTGCATTTGCCGCATCA+CGG | 0.484825 | 4.3:-16273030 | None:intergenic |
| TGGTGTCATAGCAAGGGTTA+AGG | 0.492194 | 4.3:+16272458 | MS.gene08439:CDS |
| TTATCTCATATCCCTTTGGC+AGG | 0.495574 | 4.3:-16272527 | None:intergenic |
| CTACAAGCTTAAGACATGTA+TGG | 0.501808 | 4.3:+16274467 | MS.gene08439:CDS |
| ACTTGCATTTGCCGCATCAC+GGG | 0.507348 | 4.3:-16273029 | None:intergenic |
| GTTTCCAGGACTGACACTAC+TGG | 0.514491 | 4.3:+16272438 | MS.gene08439:intron |
| ATGTAAGATTGGAGGTGAGT+GGG | 0.516033 | 4.3:+16274133 | MS.gene08439:CDS |
| AGCCCATTGACGGTGCCAAT+AGG | 0.521460 | 4.3:+16275273 | MS.gene08439:CDS |
| TTTAACACTTTCCTGCCAAA+GGG | 0.523436 | 4.3:+16272516 | MS.gene08439:CDS |
| GTGTTTGTGAAGCCCATTGA+CGG | 0.530801 | 4.3:+16275263 | MS.gene08439:CDS |
| CTGGACAACGAATGAGATGC+TGG | 0.534856 | 4.3:-16275316 | None:intergenic |
| GTTCGTGGACCATGCGATGA+TGG | 0.536080 | 4.3:+16274251 | MS.gene08439:CDS |
| ACACTACTGGTGTCATAGCA+AGG | 0.537234 | 4.3:+16272451 | MS.gene08439:CDS |
| TGTGCAAGTAGACAAGTCTC+TGG | 0.546119 | 4.3:+16274109 | MS.gene08439:CDS |
| TTGTCAGCATGCATTGCGCT+TGG | 0.547143 | 4.3:+16275012 | MS.gene08439:CDS |
| ATTTAACACTTTCCTGCCAA+AGG | 0.547821 | 4.3:+16272515 | MS.gene08439:CDS |
| TGTAAGATTGGAGGTGAGTG+GGG | 0.559652 | 4.3:+16274134 | MS.gene08439:CDS |
| TGCTGACAAAAGCCAAACCA+TGG | 0.576067 | 4.3:-16274998 | None:intergenic |
| TTCTTGCTGTTACTAAGGAG+AGG | 0.577976 | 4.3:+16274201 | MS.gene08439:CDS |
| TCTCTGGTATGTAAGATTGG+AGG | 0.578117 | 4.3:+16274125 | MS.gene08439:CDS |
| TCTTGCTGTTACTAAGGAGA+GGG | 0.578245 | 4.3:+16274202 | MS.gene08439:CDS |
| GATAACACTTGATGAGGATG+AGG | 0.597977 | 4.3:+16272545 | MS.gene08439:CDS |
| CAATGCAGCGCTTCAATGAG+CGG | 0.601836 | 4.3:+16272994 | MS.gene08439:CDS |
| TTTCAAACCAGATACTCCCA+TGG | 0.607664 | 4.3:+16274981 | MS.gene08439:intron |
| CAGTGTGCACTAGAACTTGG+TGG | 0.610191 | 4.3:+16274417 | MS.gene08439:intron |
| AGGGTTAAGGAACTATTCAA+AGG | 0.610387 | 4.3:+16272471 | MS.gene08439:CDS |
| CTTCTATGACACCCGTGATG+CGG | 0.613190 | 4.3:+16273018 | MS.gene08439:CDS |
| ACTTGGTGGTGATACTGACT+TGG | 0.620652 | 4.3:+16274431 | MS.gene08439:CDS |
| AATGGAGCATGCTGTGTGGA+AGG | 0.623233 | 4.3:-16272960 | None:intergenic |
| TATGTAAGATTGGAGGTGAG+TGG | 0.623493 | 4.3:+16274132 | MS.gene08439:CDS |
| CACTACTGGTGTCATAGCAA+GGG | 0.626400 | 4.3:+16272452 | MS.gene08439:CDS |
| AGATACTCTCCATCATCGCA+TGG | 0.629329 | 4.3:-16274260 | None:intergenic |
| ACGTGATGATTACACTGAAG+TGG | 0.630722 | 4.3:-16275242 | None:intergenic |
| ATATGAGATAACACTTGATG+AGG | 0.638086 | 4.3:+16272539 | MS.gene08439:CDS |
| GCTGACAAAAGCCAAACCAT+GGG | 0.644904 | 4.3:-16274997 | None:intergenic |
| TACATGTCTTAAGCTTGTAG+AGG | 0.651623 | 4.3:-16274464 | None:intergenic |
| GCGGCAAATGCAAGTAGACA+AGG | 0.660472 | 4.3:+16273037 | MS.gene08439:CDS |
| AAAATATGACATGTTCCTCG+AGG | 0.689273 | 4.3:+16272297 | None:intergenic |
| ACCAAATGGAGCATGCTGTG+TGG | 0.702132 | 4.3:-16272964 | None:intergenic |
| GAATGCCTTACAAAGCACGC+AGG | 0.709114 | 4.3:+16274156 | MS.gene08439:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTTCAATTAATTTATA+GGG | + | chr4.3:16273326-16273345 | MS.gene08439:intron | 10.0% |
| !!! | TCAATTTTCAATTAATTTAT+AGG | + | chr4.3:16273325-16273344 | MS.gene08439:intron | 10.0% |
| !!! | TTTATTTGTTATTACTATAT+AGG | + | chr4.3:16274825-16274844 | MS.gene08439:intron | 10.0% |
| !!! | TTTTTTAAATAAAAAACTCT+AGG | + | chr4.3:16272863-16272882 | MS.gene08439:intron | 10.0% |
| !! | ATCAATTAATTCCAAAATTA+AGG | - | chr4.3:16273489-16273508 | None:intergenic | 15.0% |
| !! | TAAAGAAACAAATAATTTCA+TGG | + | chr4.3:16273745-16273764 | MS.gene08439:intron | 15.0% |
| !!! | AATTTTTTATTATTTGGTTC+TGG | + | chr4.3:16274357-16274376 | MS.gene08439:intron | 15.0% |
| !!! | ATCGTCAATTTTTTATTATT+TGG | + | chr4.3:16274351-16274370 | MS.gene08439:intron | 15.0% |
| !!! | ATTATTTTGAAAATCTTTGT+TGG | + | chr4.3:16273353-16273372 | MS.gene08439:intron | 15.0% |
| !!! | CAAAGATTTTCAAAATAATA+CGG | - | chr4.3:16273352-16273371 | None:intergenic | 15.0% |
| !!! | GTTGTATTTAAATTTTTGAA+TGG | + | chr4.3:16274903-16274922 | MS.gene08439:intron | 15.0% |
| !! | AAGTTACATTTATTACTTGA+TGG | - | chr4.3:16274696-16274715 | None:intergenic | 20.0% |
| !! | AGTTACATTTATTACTTGAT+GGG | - | chr4.3:16274695-16274714 | None:intergenic | 20.0% |
| !! | ATAGATACACATGAAAAAAA+TGG | - | chr4.3:16274756-16274775 | None:intergenic | 20.0% |
| !! | CTTTCATGATATGTAATTTA+TGG | + | chr4.3:16273213-16273232 | MS.gene08439:intron | 20.0% |
| !! | GAACAAAAATATAGATCATA+TGG | - | chr4.3:16274301-16274320 | None:intergenic | 20.0% |
| !! | TAGATACACATGAAAAAAAT+GGG | - | chr4.3:16274755-16274774 | None:intergenic | 20.0% |
| !! | TGTTAAATCCAAAAATCAAA+TGG | - | chr4.3:16272503-16272522 | None:intergenic | 20.0% |
| !!! | AAAGTCTTCTAAATTAGTTT+AGG | + | chr4.3:16274567-16274586 | MS.gene08439:intron | 20.0% |
| !!! | AATTGATTTGTAGCTTTAAT+CGG | + | chr4.3:16272682-16272701 | MS.gene08439:intron | 20.0% |
| !!! | ACAATCTTAGTTTAGTTTAT+TGG | + | chr4.3:16273558-16273577 | MS.gene08439:intron | 20.0% |
| !!! | ACATGTTTACAAATCATTTT+TGG | + | chr4.3:16272743-16272762 | MS.gene08439:intron | 20.0% |
| !!! | AGTTGTTTCAATTTTGATTT+CGG | + | chr4.3:16274623-16274642 | MS.gene08439:intron | 20.0% |
| !!! | CAACTTTATGAGTAAATTTT+TGG | + | chr4.3:16273602-16273621 | MS.gene08439:intron | 20.0% |
| !!! | GTAAAAAATTTGTTATGAAG+AGG | - | chr4.3:16273076-16273095 | None:intergenic | 20.0% |
| !!! | GTATTTAAATTTTTGAATGG+AGG | + | chr4.3:16274906-16274925 | MS.gene08439:intron | 20.0% |
| !!! | TTTGTAATGATTTTGAATGA+CGG | + | chr4.3:16272365-16272384 | MS.gene08439:intron | 20.0% |
| !!! | TTTTGTTCGTTTAAAAACAT+TGG | + | chr4.3:16272827-16272846 | MS.gene08439:intron | 20.0% |
| ! | ACATGGCATTATTAAACATA+AGG | + | chr4.3:16273376-16273395 | MS.gene08439:intron | 25.0% |
| ! | AGATACACATGAAAAAAATG+GGG | - | chr4.3:16274754-16274773 | None:intergenic | 25.0% |
| ! | AGGTTCAAATGTTTACTATA+AGG | + | chr4.3:16273396-16273415 | MS.gene08439:intron | 25.0% |
| ! | ATCATCATCAAAACTGTTAA+TGG | + | chr4.3:16273959-16273978 | MS.gene08439:intron | 25.0% |
| ! | TCATGTGTATCTATTTAACT+TGG | + | chr4.3:16274762-16274781 | MS.gene08439:intron | 25.0% |
| ! | TTACATATCATGAAAGATTC+AGG | - | chr4.3:16273209-16273228 | None:intergenic | 25.0% |
| !! | AAAAAGAAAGCATGTTCAAA+TGG | - | chr4.3:16272802-16272821 | None:intergenic | 25.0% |
| !! | ATCACTTTCATTGATTATTG+TGG | + | chr4.3:16274059-16274078 | MS.gene08439:intron | 25.0% |
| !! | ATGCTGCAATTCTTTTAAAT+TGG | + | chr4.3:16273130-16273149 | MS.gene08439:intron | 25.0% |
| !! | TAATTGTTGCATTCTGATTT+TGG | + | chr4.3:16274948-16274967 | MS.gene08439:intron | 25.0% |
| !! | TAGTTTTCTGAACAAGATAA+AGG | + | chr4.3:16272611-16272630 | MS.gene08439:CDS | 25.0% |
| !! | TCAAATTCAACTGTTTTCTT+CGG | - | chr4.3:16272582-16272601 | None:intergenic | 25.0% |
| !! | TGCTGCAATTCTTTTAAATT+GGG | + | chr4.3:16273131-16273150 | MS.gene08439:intron | 25.0% |
| !! | TGTAAACATGTTCATCATTT+TGG | - | chr4.3:16272734-16272753 | None:intergenic | 25.0% |
| !!! | AAAATTTGTTATGAAGAGGA+AGG | - | chr4.3:16273072-16273091 | None:intergenic | 25.0% |
| !!! | ATCTATATTTTTGTTCTTCC+GGG | + | chr4.3:16274305-16274324 | MS.gene08439:intron | 25.0% |
| !!! | CTTTATGAGTAAATTTTTGG+TGG | + | chr4.3:16273605-16273624 | MS.gene08439:intron | 25.0% |
| !!! | GAGTTTTGTTATGAATTTTG+AGG | + | chr4.3:16273463-16273482 | MS.gene08439:intron | 25.0% |
| !!! | GATCTATATTTTTGTTCTTC+CGG | + | chr4.3:16274304-16274323 | MS.gene08439:intron | 25.0% |
| AACTAACTCAGTAACTGTAA+TGG | - | chr4.3:16272653-16272672 | None:intergenic | 30.0% | |
| AATCTCCATGTGACTTAAAA+AGG | - | chr4.3:16272896-16272915 | None:intergenic | 30.0% | |
| ACCTTAATATAAACCAAGAG+TGG | - | chr4.3:16274660-16274679 | None:intergenic | 30.0% | |
| ATATGAGATAACACTTGATG+AGG | + | chr4.3:16272539-16272558 | MS.gene08439:CDS | 30.0% | |
| ATCCTATCAAAGATATAGAC+AGG | + | chr4.3:16274798-16274817 | MS.gene08439:intron | 30.0% | |
| ATCTCCATGTGACTTAAAAA+GGG | - | chr4.3:16272895-16272914 | None:intergenic | 30.0% | |
| ATGGTAGTATATCATTTGTC+AGG | + | chr4.3:16274862-16274881 | MS.gene08439:intron | 30.0% | |
| ATGTACATAAATGATACCAG+AGG | - | chr4.3:16273890-16273909 | None:intergenic | 30.0% | |
| GATACACATGAAAAAAATGG+GGG | - | chr4.3:16274753-16274772 | None:intergenic | 30.0% | |
| TATAAACCAAGAGTGGAATT+TGG | - | chr4.3:16274653-16274672 | None:intergenic | 30.0% | |
| TATAGATCCTAGCTAATTAC+AGG | + | chr4.3:16273521-16273540 | MS.gene08439:intron | 30.0% | |
| TCCACTCTTGGTTTATATTA+AGG | + | chr4.3:16274656-16274675 | MS.gene08439:intron | 30.0% | |
| TCTGGTATCATTTATGTACA+TGG | + | chr4.3:16273889-16273908 | MS.gene08439:intron | 30.0% | |
| TTAAGATCCCTTGATTGTTT+AGG | - | chr4.3:16272400-16272419 | None:intergenic | 30.0% | |
| TTGAAAATCTTTGTTGGACA+TGG | + | chr4.3:16273359-16273378 | MS.gene08439:intron | 30.0% | |
| TTGGATTATGGTATAGGTTT+CGG | + | chr4.3:16273160-16273179 | MS.gene08439:intron | 30.0% | |
| TTTGCATAATTAGAGGAGAT+TGG | + | chr4.3:16275120-16275139 | MS.gene08439:intron | 30.0% | |
| ! | AGTTTAGTTTATTGGTGTTC+TGG | + | chr4.3:16273566-16273585 | MS.gene08439:intron | 30.0% |
| ! | ATTGCAGCAATGATTTTACT+TGG | + | chr4.3:16273670-16273689 | MS.gene08439:intron | 30.0% |
| ! | CATGGTTTTCTTTAAGTACA+AGG | + | chr4.3:16273763-16273782 | MS.gene08439:intron | 30.0% |
| ! | CTTTTAAATTGGGTTTGAGT+TGG | + | chr4.3:16273141-16273160 | MS.gene08439:intron | 30.0% |
| ! | GACTGGAAAAGATATGTTTT+AGG | - | chr4.3:16273824-16273843 | None:intergenic | 30.0% |
| ! | GTTTAGTTTATTGGTGTTCT+GGG | + | chr4.3:16273567-16273586 | MS.gene08439:intron | 30.0% |
| ! | TTGCAGCAATGATTTTACTT+GGG | + | chr4.3:16273671-16273690 | MS.gene08439:intron | 30.0% |
| !! | AAGCTGTTTTGCATAATTAG+AGG | + | chr4.3:16275113-16275132 | MS.gene08439:intron | 30.0% |
| !! | ATTATTTGGTTCTGGTATGT+TGG | + | chr4.3:16274365-16274384 | MS.gene08439:intron | 30.0% |
| !! | ATTTGTCAGGCTATTTTCTT+TGG | + | chr4.3:16274875-16274894 | MS.gene08439:intron | 30.0% |
| !! | GTAACTTGCTTATATGTCTT+GGG | + | chr4.3:16274709-16274728 | MS.gene08439:intron | 30.0% |
| !! | TGTAACTTGCTTATATGTCT+TGG | + | chr4.3:16274708-16274727 | MS.gene08439:intron | 30.0% |
| !! | TTTGAGTTGGATTATGGTAT+AGG | + | chr4.3:16273154-16273173 | MS.gene08439:intron | 30.0% |
| !!! | AGTCATGTTCGTGTTATTTT+TGG | + | chr4.3:16273236-16273255 | MS.gene08439:intron | 30.0% |
| !!! | ATTTATTTTTGGCTGTTTCC+AGG | + | chr4.3:16272424-16272443 | MS.gene08439:intron | 30.0% |
| !!! | GAATTTTGAGGCCTTAATTT+TGG | + | chr4.3:16273475-16273494 | MS.gene08439:intron | 30.0% |
| AAGTCTCTGGTATGTAAGAT+TGG | + | chr4.3:16274122-16274141 | MS.gene08439:CDS | 35.0% | |
| ACAGTATTGTTCTTCTCTTC+AGG | - | chr4.3:16275203-16275222 | None:intergenic | 35.0% | |
| ACATTGTGCCTAAACAATCA+AGG | + | chr4.3:16272389-16272408 | MS.gene08439:intron | 35.0% | |
| AGCCTGTCTATATCTTTGAT+AGG | - | chr4.3:16274803-16274822 | None:intergenic | 35.0% | |
| AGGGTTAAGGAACTATTCAA+AGG | + | chr4.3:16272471-16272490 | MS.gene08439:CDS | 35.0% | |
| AGTGTTATCTCATATCCCTT+TGG | - | chr4.3:16272534-16272553 | None:intergenic | 35.0% | |
| ATTTAACACTTTCCTGCCAA+AGG | + | chr4.3:16272515-16272534 | MS.gene08439:CDS | 35.0% | |
| CATATCACAAATTGACTGAC+TGG | - | chr4.3:16273841-16273860 | None:intergenic | 35.0% | |
| CATTGTGCCTAAACAATCAA+GGG | + | chr4.3:16272390-16272409 | MS.gene08439:intron | 35.0% | |
| CTACAAGCTTAAGACATGTA+TGG | + | chr4.3:16274467-16274486 | MS.gene08439:CDS | 35.0% | |
| TAATTTATCCTGCTCTTCAC+TGG | - | chr4.3:16275338-16275357 | None:intergenic | 35.0% | |
| TACATGTCTTAAGCTTGTAG+AGG | - | chr4.3:16274467-16274486 | None:intergenic | 35.0% | |
| TGCATTGAATTTCGACCAAA+TGG | - | chr4.3:16272981-16273000 | None:intergenic | 35.0% | |
| TTAAGTGCAGTGCAGATATA+AGG | - | chr4.3:16275146-16275165 | None:intergenic | 35.0% | |
| TTTAACACTTTCCTGCCAAA+GGG | + | chr4.3:16272516-16272535 | MS.gene08439:CDS | 35.0% | |
| ! | AATTCAACTGTTTTCTTCGG+AGG | - | chr4.3:16272579-16272598 | None:intergenic | 35.0% |
| ! | CTATAAGAGTGTGATTGTGA+TGG | + | chr4.3:16273424-16273443 | MS.gene08439:intron | 35.0% |
| ! | GAAGAACAATACTGTGCTTT+TGG | + | chr4.3:16275208-16275227 | MS.gene08439:CDS | 35.0% |
| ! | TTTTTACAGAAGCCTAACCA+TGG | - | chr4.3:16274015-16274034 | None:intergenic | 35.0% |
| !! | ATATTTTTGTTCTTCCGGGA+AGG | + | chr4.3:16274309-16274328 | MS.gene08439:intron | 35.0% |
| !! | ATTGGGTTTGAGTTGGATTA+TGG | + | chr4.3:16273148-16273167 | MS.gene08439:intron | 35.0% |
| !! | GATTTGTAGCTTTAATCGGT+TGG | + | chr4.3:16272686-16272705 | MS.gene08439:intron | 35.0% |
| !! | GGTCACAACCATTTGATTTT+TGG | + | chr4.3:16272492-16272511 | MS.gene08439:CDS | 35.0% |
| !! | TCTAGTTCTTGCTGTTACTA+AGG | + | chr4.3:16274196-16274215 | MS.gene08439:CDS | 35.0% |
| !! | TGATACTGACTTGGTTAAAC+AGG | + | chr4.3:16274440-16274459 | MS.gene08439:CDS | 35.0% |
| !! | TGTTGCATTCTGATTTTGGT+TGG | + | chr4.3:16274952-16274971 | MS.gene08439:intron | 35.0% |
| !! | TTGATTATTGTGGCTTTGTC+TGG | + | chr4.3:16274069-16274088 | MS.gene08439:intron | 35.0% |
| !!! | ATAGGCTAGCTTTTTTGACA+TGG | + | chr4.3:16274843-16274862 | MS.gene08439:intron | 35.0% |
| ACGTGATGATTACACTGAAG+TGG | - | chr4.3:16275245-16275264 | None:intergenic | 40.0% | |
| AGAGAAAGACAAAACCTTCC+CGG | - | chr4.3:16274326-16274345 | None:intergenic | 40.0% | |
| AGATCCTAGCTAATTACAGG+TGG | + | chr4.3:16273524-16273543 | MS.gene08439:intron | 40.0% | |
| ATGATACCAGAGGAATGTAG+AGG | - | chr4.3:16273880-16273899 | None:intergenic | 40.0% | |
| ATGTAAGATTGGAGGTGAGT+GGG | + | chr4.3:16274133-16274152 | MS.gene08439:CDS | 40.0% | |
| CAATAGGAGATACGTGTTTC+AGG | + | chr4.3:16275289-16275308 | MS.gene08439:CDS | 40.0% | |
| CTGAAACACGTATCTCCTAT+TGG | - | chr4.3:16275291-16275310 | None:intergenic | 40.0% | |
| GATAACACTTGATGAGGATG+AGG | + | chr4.3:16272545-16272564 | MS.gene08439:CDS | 40.0% | |
| TATGTAAGATTGGAGGTGAG+TGG | + | chr4.3:16274132-16274151 | MS.gene08439:CDS | 40.0% | |
| TCCTCGAGGTAAAGATTTCA+AGG | + | chr4.3:16272311-16272330 | MS.gene08439:intron | 40.0% | |
| TCTCTGGTATGTAAGATTGG+AGG | + | chr4.3:16274125-16274144 | MS.gene08439:CDS | 40.0% | |
| TGATACCAGAGGAATGTAGA+GGG | - | chr4.3:16273879-16273898 | None:intergenic | 40.0% | |
| TTATCTCATATCCCTTTGGC+AGG | - | chr4.3:16272530-16272549 | None:intergenic | 40.0% | |
| TTATTCCCTCTACATTCCTC+TGG | + | chr4.3:16273871-16273890 | MS.gene08439:intron | 40.0% | |
| TTTCAAACCAGATACTCCCA+TGG | + | chr4.3:16274981-16275000 | MS.gene08439:intron | 40.0% | |
| ! | ACAATACTGTGCTTTTGGTG+AGG | + | chr4.3:16275213-16275232 | MS.gene08439:CDS | 40.0% |
| ! | AGTTTATTGGTGTTCTGGGT+AGG | + | chr4.3:16273571-16273590 | MS.gene08439:intron | 40.0% |
| ! | ATCTATCTGCGATTTGTTCG+TGG | + | chr4.3:16274236-16274255 | MS.gene08439:CDS | 40.0% |
| ! | GTTTATTGGTGTTCTGGGTA+GGG | + | chr4.3:16273572-16273591 | MS.gene08439:intron | 40.0% |
| ! | TTTTACTTGGGTCATGAGAC+AGG | + | chr4.3:16273683-16273702 | MS.gene08439:intron | 40.0% |
| !! | GAAGGTGCTGAAGAATTATC+TGG | - | chr4.3:16272945-16272964 | None:intergenic | 40.0% |
| !! | TCTTGCTGTTACTAAGGAGA+GGG | + | chr4.3:16274202-16274221 | MS.gene08439:CDS | 40.0% |
| !! | TTCTTGCTGTTACTAAGGAG+AGG | + | chr4.3:16274201-16274220 | MS.gene08439:CDS | 40.0% |
| !!! | GCTACCCTTTTTAAGTCACA+TGG | + | chr4.3:16272888-16272907 | MS.gene08439:CDS | 40.0% |
| AAAATGGGGGTTGACTGTTG+AGG | - | chr4.3:16274740-16274759 | None:intergenic | 45.0% | |
| AAATGGGGGTTGACTGTTGA+GGG | - | chr4.3:16274739-16274758 | None:intergenic | 45.0% | |
| AACCAGATACTCCCATGGTT+TGG | + | chr4.3:16274986-16275005 | MS.gene08439:intron | 45.0% | |
| ACTAACCTGCGTGCTTTGTA+AGG | - | chr4.3:16274164-16274183 | None:intergenic | 45.0% | |
| AGATACTCTCCATCATCGCA+TGG | - | chr4.3:16274263-16274282 | None:intergenic | 45.0% | |
| GCCTTGAAATCTTTACCTCG+AGG | - | chr4.3:16272315-16272334 | None:intergenic | 45.0% | |
| GCTCTAACCAATTACTTCCC+CGG | + | chr4.3:16273627-16273646 | MS.gene08439:intron | 45.0% | |
| GCTGACAAAAGCCAAACCAT+GGG | - | chr4.3:16275000-16275019 | None:intergenic | 45.0% | |
| GGCTATCCAAATTCCACTCT+TGG | + | chr4.3:16274644-16274663 | MS.gene08439:intron | 45.0% | |
| GTGTTTGTGAAGCCCATTGA+CGG | + | chr4.3:16275263-16275282 | MS.gene08439:CDS | 45.0% | |
| GTTCTAGTGCACACTGGAAA+AGG | - | chr4.3:16274413-16274432 | None:intergenic | 45.0% | |
| TACTTGCATTTGCCGCATCA+CGG | - | chr4.3:16273033-16273052 | None:intergenic | 45.0% | |
| TCCACCACCTGTAATTAGCT+AGG | - | chr4.3:16273531-16273550 | None:intergenic | 45.0% | |
| TCCTAGCTAATTACAGGTGG+TGG | + | chr4.3:16273527-16273546 | MS.gene08439:intron | 45.0% | |
| TGCTGACAAAAGCCAAACCA+TGG | - | chr4.3:16275001-16275020 | None:intergenic | 45.0% | |
| TGTAAGATTGGAGGTGAGTG+GGG | + | chr4.3:16274134-16274153 | MS.gene08439:CDS | 45.0% | |
| TGTGCAAGTAGACAAGTCTC+TGG | + | chr4.3:16274109-16274128 | MS.gene08439:CDS | 45.0% | |
| TTCCAGTGTGCACTAGAACT+TGG | + | chr4.3:16274414-16274433 | MS.gene08439:intron | 45.0% | |
| TTGATCATGCCAGATGCGAA+TGG | + | chr4.3:16275057-16275076 | MS.gene08439:intron | 45.0% | |
| ! | TGCTGCAATAAAGTGCCAAC+AGG | - | chr4.3:16273659-16273678 | None:intergenic | 45.0% |
| !! | ACACTACTGGTGTCATAGCA+AGG | + | chr4.3:16272451-16272470 | MS.gene08439:CDS | 45.0% |
| !! | ACTTGGTGGTGATACTGACT+TGG | + | chr4.3:16274431-16274450 | MS.gene08439:CDS | 45.0% |
| !! | CACTACTGGTGTCATAGCAA+GGG | + | chr4.3:16272452-16272471 | MS.gene08439:CDS | 45.0% |
| !! | CTGCACTGCACTTAAGTTGA+AGG | + | chr4.3:16275151-16275170 | MS.gene08439:CDS | 45.0% |
| !! | TGGTGTCATAGCAAGGGTTA+AGG | + | chr4.3:16272458-16272477 | MS.gene08439:CDS | 45.0% |
| !!! | ATCTTAATATTATTTATTTT+TGG | + | chr4.3:16272413-16272432 | MS.gene08439:intron | 5.0% |
| AAGTGCCAACAGGAAGCAAC+CGG | - | chr4.3:16273649-16273668 | None:intergenic | 50.0% | |
| AATGGAGCATGCTGTGTGGA+AGG | - | chr4.3:16272963-16272982 | None:intergenic | 50.0% | |
| ACCAAATGGAGCATGCTGTG+TGG | - | chr4.3:16272967-16272986 | None:intergenic | 50.0% | |
| ACTTGCATTTGCCGCATCAC+GGG | - | chr4.3:16273032-16273051 | None:intergenic | 50.0% | |
| CAATGCAGCGCTTCAATGAG+CGG | + | chr4.3:16272994-16273013 | MS.gene08439:CDS | 50.0% | |
| CAGTGTGCACTAGAACTTGG+TGG | + | chr4.3:16274417-16274436 | MS.gene08439:intron | 50.0% | |
| CTCACATCTCCATTCGCATC+TGG | - | chr4.3:16275069-16275088 | None:intergenic | 50.0% | |
| CTCCTATTGGCACCGTCAAT+GGG | - | chr4.3:16275278-16275297 | None:intergenic | 50.0% | |
| CTGGACAACGAATGAGATGC+TGG | - | chr4.3:16275319-16275338 | None:intergenic | 50.0% | |
| CTTCTATGACACCCGTGATG+CGG | + | chr4.3:16273018-16273037 | MS.gene08439:CDS | 50.0% | |
| GAAGCAACCGGGGAAGTAAT+TGG | - | chr4.3:16273637-16273656 | None:intergenic | 50.0% | |
| GAATGCCTTACAAAGCACGC+AGG | + | chr4.3:16274156-16274175 | MS.gene08439:CDS | 50.0% | |
| GCGGCAAATGCAAGTAGACA+AGG | + | chr4.3:16273037-16273056 | MS.gene08439:CDS | 50.0% | |
| GTTTCCAGGACTGACACTAC+TGG | + | chr4.3:16272438-16272457 | MS.gene08439:intron | 50.0% | |
| TACAGAAGCCTAACCATGGC+AGG | - | chr4.3:16274011-16274030 | None:intergenic | 50.0% | |
| TCCACACAGCATGCTCCATT+TGG | + | chr4.3:16272963-16272982 | MS.gene08439:CDS | 50.0% | |
| TCTCCTATTGGCACCGTCAA+TGG | - | chr4.3:16275279-16275298 | None:intergenic | 50.0% | |
| TTCGTTGTCCAGTGAAGAGC+AGG | + | chr4.3:16275327-16275346 | MS.gene08439:CDS | 50.0% | |
| TTGTCAGCATGCATTGCGCT+TGG | + | chr4.3:16275012-16275031 | MS.gene08439:CDS | 50.0% | |
| ! | CACCAAGTTCTAGTGCACAC+TGG | - | chr4.3:16274419-16274438 | None:intergenic | 50.0% |
| !! | AGCCAAACCATGGGAGTATC+TGG | - | chr4.3:16274991-16275010 | None:intergenic | 50.0% |
| AGTGCCAACAGGAAGCAACC+GGG | - | chr4.3:16273648-16273667 | None:intergenic | 55.0% | |
| GACACCAGTAGTGTCAGTCC+TGG | - | chr4.3:16272445-16272464 | None:intergenic | 55.0% | |
| GTTCGTGGACCATGCGATGA+TGG | + | chr4.3:16274251-16274270 | MS.gene08439:CDS | 55.0% | |
| TTTCAACGCAGCTCCTGCCA+TGG | + | chr4.3:16273995-16274014 | MS.gene08439:intron | 55.0% | |
| ! | AGCCCATTGACGGTGCCAAT+AGG | + | chr4.3:16275273-16275292 | MS.gene08439:CDS | 55.0% |
| ACGCAGCTCCTGCCATGGTT+AGG | + | chr4.3:16274000-16274019 | MS.gene08439:intron | 60.0% | |
| CTTCCCCGGTTGCTTCCTGT+TGG | + | chr4.3:16273641-16273660 | MS.gene08439:intron | 60.0% | |
| GTGCCAACAGGAAGCAACCG+GGG | - | chr4.3:16273647-16273666 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 16272302 | 16275358 | 16272302 | ID=MS.gene08439 |
| chr4.3 | mRNA | 16272302 | 16275358 | 16272302 | ID=MS.gene08439.t1;Parent=MS.gene08439 |
| chr4.3 | exon | 16272302 | 16272318 | 16272302 | ID=MS.gene08439.t1.exon1;Parent=MS.gene08439.t1 |
| chr4.3 | CDS | 16272302 | 16272318 | 16272302 | ID=cds.MS.gene08439.t1;Parent=MS.gene08439.t1 |
| chr4.3 | exon | 16272446 | 16272632 | 16272446 | ID=MS.gene08439.t1.exon2;Parent=MS.gene08439.t1 |
| chr4.3 | CDS | 16272446 | 16272632 | 16272446 | ID=cds.MS.gene08439.t1;Parent=MS.gene08439.t1 |
| chr4.3 | exon | 16272885 | 16273058 | 16272885 | ID=MS.gene08439.t1.exon3;Parent=MS.gene08439.t1 |
| chr4.3 | CDS | 16272885 | 16273058 | 16272885 | ID=cds.MS.gene08439.t1;Parent=MS.gene08439.t1 |
| chr4.3 | exon | 16274095 | 16274289 | 16274095 | ID=MS.gene08439.t1.exon4;Parent=MS.gene08439.t1 |
| chr4.3 | CDS | 16274095 | 16274289 | 16274095 | ID=cds.MS.gene08439.t1;Parent=MS.gene08439.t1 |
| chr4.3 | exon | 16274420 | 16274509 | 16274420 | ID=MS.gene08439.t1.exon5;Parent=MS.gene08439.t1 |
| chr4.3 | CDS | 16274420 | 16274509 | 16274420 | ID=cds.MS.gene08439.t1;Parent=MS.gene08439.t1 |
| chr4.3 | exon | 16274992 | 16275041 | 16274992 | ID=MS.gene08439.t1.exon6;Parent=MS.gene08439.t1 |
| chr4.3 | CDS | 16274992 | 16275041 | 16274992 | ID=cds.MS.gene08439.t1;Parent=MS.gene08439.t1 |
| chr4.3 | exon | 16275133 | 16275358 | 16275133 | ID=MS.gene08439.t1.exon7;Parent=MS.gene08439.t1 |
| chr4.3 | CDS | 16275133 | 16275358 | 16275133 | ID=cds.MS.gene08439.t1;Parent=MS.gene08439.t1 |
| Gene Sequence |
| Protein sequence |
