AlfalfaGEDB | MS.gene08494

M. sativa cultivar XinJiangDaYe / MS.gene08494

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08494.t1	XP_013444515.1	72	515	48	2	1	515	1	419	1.70E-193	685.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08494.t1	Q9M126	51.7	174	79	3	14	185	6	176	1.1e-44	182.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08494.t1	G7ZZ26	72.0	515	48	2	1	515	1	419	1.2e-193	685.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene08494.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08494.t1	MTR_8g023860	88.065	310	31	1	1	304	1	310	0.0	540
MS.gene08494.t1	MTR_8g023860	85.135	222	27	1	300	515	198	419	3.37e-126	375
MS.gene08494.t1	MTR_8g023840	67.183	323	84	6	1	304	1	320	1.26e-137	403
MS.gene08494.t1	MTR_8g023840	52.564	234	60	5	300	515	198	398	1.23e-61	207
MS.gene08494.t1	MTR_8g023930	68.284	268	77	2	10	269	22	289	2.40e-130	387
MS.gene08494.t1	MTR_8g023930	51.250	80	31	2	300	371	210	289	5.05e-16	80.9
MS.gene08494.t1	MTR_8g023900	64.360	289	92	4	1	280	184	470	1.45e-127	380
MS.gene08494.t1	MTR_8g023900	64.324	185	64	2	1	183	1	185	8.93e-79	254
MS.gene08494.t1	MTR_8g023900	38.462	143	71	5	248	382	337	470	5.13e-18	87.0
MS.gene08494.t1	MTR_8g023880	48.598	214	85	6	12	211	7	209	1.76e-54	184

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08494.t1	AT4G01550	52.247	178	72	4	14	185	6	176	1.22e-53	188
MS.gene08494.t1	AT4G35580	52.469	162	68	4	8	163	5	163	1.18e-51	184
MS.gene08494.t1	AT4G35580	52.469	162	68	4	8	163	5	163	1.29e-51	184
MS.gene08494.t1	AT4G35580	52.469	162	68	4	8	163	5	163	1.56e-51	183
MS.gene08494.t1	AT3G49530	51.235	162	67	5	8	161	9	166	1.15e-49	176
MS.gene08494.t1	AT1G33060	53.797	158	64	4	8	159	20	174	3.40e-49	179
MS.gene08494.t1	AT1G33060	53.797	158	64	4	8	159	20	174	3.61e-49	179
MS.gene08494.t1	AT3G49530	51.235	162	67	5	8	161	9	166	3.75e-49	176
MS.gene08494.t1	AT5G24590	51.875	160	69	4	8	161	9	166	2.49e-48	173
MS.gene08494.t1	AT4G01520	33.969	262	161	5	13	271	5	257	4.57e-44	158

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Find 87 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGGAATCAATATTTC+AGG	0.281347	8.2:-72105637	MS.gene08494:CDS
AAATATGGAATCAATATTTC+AGG	0.281347	8.2:-72106094	MS.gene08494:CDS
AAATTGTTGAAATCAACGCA+TGG	0.648209	8.2:-72104978	MS.gene08494:CDS
AACCTTGTCATCTTCAAAGG+TGG	0.630537	8.2:+72106963	None:intergenic
AAGACTCTTGTTTACTATAG+TGG	0.415807	8.2:-72107036	MS.gene08494:CDS
AATGATTATTGACGGGGATT+TGG	0.293193	8.2:-72105460	MS.gene08494:CDS
AATGATTATTGACGGGGATT+TGG	0.293193	8.2:-72105917	MS.gene08494:CDS
ACAAACCTTGTCATCTTCAA+AGG	0.536374	8.2:+72106960	None:intergenic
ACAGGAACATGGTCAAGAGT+CGG	0.636129	8.2:+72107451	None:intergenic
ACTCTTGACCATGTTCCTGT+TGG	0.471228	8.2:-72107448	MS.gene08494:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGACTAAAAGAGTGACT+TGG	+	chr8.2:72105665-72105684	None:intergenic	30.0%
AAAAGTCCGCTACAAAATTT+CGG	+	chr8.2:72105806-72105825	None:intergenic	30.0%
AAATTGTTGAAATCAACGCA+TGG	-	chr8.2:72107216-72107235	MS.gene08494:intron	30.0%
AGGGGTAGCAATAATATTAT+TGG	-	chr8.2:72105128-72105147	MS.gene08494:intron	30.0%
AGGTATAACATTGTTGACAA+TGG	+	chr8.2:72104843-72104862	None:intergenic	30.0%
ATAAGTATGCAAAGAGTAAG+AGG	-	chr8.2:72105042-72105061	MS.gene08494:CDS	30.0%
ATGCAGATATATGTGATGAA+GGG	-	chr8.2:72105878-72105897	MS.gene08494:CDS	30.0%
CAAAGAGTAAGAGGTTTAAA+AGG	-	chr8.2:72105051-72105070	MS.gene08494:intron	30.0%
CATTCTAGTAGCATTTCAAA+AGG	+	chr8.2:72107089-72107108	None:intergenic	30.0%
GACAAAACATGAGTTTATTC+AGG	-	chr8.2:72105398-72105417	MS.gene08494:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	72104725	72107491	72104725	ID=MS.gene08494
chr8.2	mRNA	72104725	72107491	72104725	ID=MS.gene08494.t1;Parent=MS.gene08494
chr8.2	exon	72107314	72107491	72107314	ID=MS.gene08494.t1.exon1;Parent=MS.gene08494.t1
chr8.2	CDS	72107314	72107491	72107314	ID=cds.MS.gene08494.t1;Parent=MS.gene08494.t1
chr8.2	exon	72106966	72107231	72106966	ID=MS.gene08494.t1.exon2;Parent=MS.gene08494.t1
chr8.2	CDS	72106966	72107231	72106966	ID=cds.MS.gene08494.t1;Parent=MS.gene08494.t1
chr8.2	exon	72106253	72106399	72106253	ID=MS.gene08494.t1.exon3;Parent=MS.gene08494.t1
chr8.2	CDS	72106253	72106399	72106253	ID=cds.MS.gene08494.t1;Parent=MS.gene08494.t1
chr8.2	exon	72105834	72106139	72105834	ID=MS.gene08494.t1.exon4;Parent=MS.gene08494.t1
chr8.2	CDS	72105834	72106139	72105834	ID=cds.MS.gene08494.t1;Parent=MS.gene08494.t1
chr8.2	exon	72105377	72105682	72105377	ID=MS.gene08494.t1.exon5;Parent=MS.gene08494.t1
chr8.2	CDS	72105377	72105682	72105377	ID=cds.MS.gene08494.t1;Parent=MS.gene08494.t1
chr8.2	exon	72104725	72105069	72104725	ID=MS.gene08494.t1.exon6;Parent=MS.gene08494.t1
chr8.2	CDS	72104725	72105069	72104725	ID=cds.MS.gene08494.t1;Parent=MS.gene08494.t1

Gene Sequence

>MS.gene08494

ATGACAACCTTTTTTCCTCCGACTCTTGACCATGTTCCTGTTGGATTCAGATTCAGACCAACAGATGAAGAGCTTGTAAGCCACTATCTCAAAAACAAGTTACTTGATAACGATTCCATTGTCAACAATGTTATACCTGAAGTTGATGTATGCAAGTATGAACCTTGGGAGTTACCAGGTAAAAAAAAAACAAACAAACAAACCCCATCATTATTTTCTCATAAAAATGCAACCTTTTTAATGTTTTTCATCTTTTTCAGCTTGTTCGGTGGTAAAATCAGATGACCCAGAATGGTTTTTCTTGTGTCCTATTGATTATAAGTATGCAAAGAGTAAGAGGTTTAAAAGGACAACTAATAATGGTTTTTGGAAAGCTACTGGAAAGGATCGAAAGATTAAGGTTAGGGGTAGCAATAATATTATTGGGATTAAGAAGACTCTTGTTTACTATAGTGGTCGTGTTCCTGGTGTTAAAAGCAGCTGGGTGATTCATGAATATCATGATACCACCTTTGAAGATGACAAGGTTTGTTTTGTTACAATAAAGGTTTTAAATGAGTTTATTAGAGTTGTTATTTATTTATTTATGAAAAATGAATATCATGAAAAATATTGACTTTTCATGTTTTATAAGTTTGTATCAGAGTTATTATTTATTTATTTAAATGAGTATGACAAAACATGAGTTTATTCAGGATTTACTATTTTCCTATATGACTGGCTGTTCTGAAATTTGATGTTTATTGAATTCATTGTTTGAAAGTTTGAACTTTGAACCCTTTTTTCTTTTGGTATCATATTTGTTAGAGGAACAACTAGTAATAGCAGATTAAAGAAAACACAAATCACAAACAATGGAATATGACCTTTTAATTACAAAGACAGTGTTTGAGATAAAGTTTTTTGTTGAAATGTTATTTTGCTGTATGACACCTTACCAAGTCACTCTTTTAGTCTTTTTCAGTTTTTGAATGTTAATAGGACTGTTCAAGAAACTAGTTTATGATTTTGACGCATTAGTTTGTTTAGTCTTGGTATCTATTTGTATAAATTGCATAAAATAAATGCTGATTATCATCCGAAATTTTGTAGCGGACTTTTGTTTTATGTCGCTTGATGAAGAAAGCTGAGAAAAAAGCTGAAAAGGAAGCTGATGCAGATATATGTGATGAAGGGGAGCCAAGTAGACACATGAGTTCCGACCATGAAAATAAAGAAACTTTTGAAGGAATTCCTGATGTAAGGAGTTCATCCTTGATAAATGATAATAGATATTTTGCGAACAAAGTTTTGGCTTTAAAGTTTAAACCTTTCTACATGAAACATGCTGAGAACTTATATTTGTTTTATAGGTGGGTGATACTTTGCCAGAAATAAATATGGAATCAATATTTCAGGCACAGGCAGAAAAATACCTTCCTTCAATCTCTGAAAATGAGCAGGAAGTATCCAACCCAAACTCGCCAATTCACGATGCCTATTTTAGAAATGACAACATCATTGTTCAGAGTCCATTTGAAACCATTGAAGAGGAAGATAAGTTCGTCAGTTCAATGATTATTGACGGGGATTTGGACAACGCTCATGTCCAGTCCGAGTCGTTGAAAATGGTCTACTATGGAAGCAGTGACACAGATGCTGAAGTAGTCTCTATGCCGGTAAATATATATTGTTCCTGATGTAAGGAGTTCCTGATGTAAGGAGTTCATCCTTGATAAATGATAATAGAAATTTTGCCAACAAAGTTTTGGCTTTAAAGTTTAAACCTTTCTACATGAAACATGCTGAGAACTTATATTTGTTTTATAGGTGGGTGATACTTTGCCAGAAATAAATATGGAATCAATATTTCAGGCACAGGCAGAAAAATACCTTCCTTCAATCTCTGAAAATGAGCAGGAAGTATCCATCCCAAACTCGCCAATTCACGATGCCTATTTTAGAAATGACAACATCATTGTTCAGAGTCCATTTGACACCATTGAAGAGGAAGATAAGTTCGTCAGTTCAATGATTATTGACGGGGATTTGGACAACGCTCATGTCCAGTCCGAGTCGTTGAAAATGGTCTACTATGGAAGCAGTGACACAGATGCTGAAGTAGTCTCTACGCCGGTAAATATATATTGTTCAAAGACCAAATGATATGAAAGTGTGTATCTCTTATTAGTGAACCATCCATTGCGGTGACATGAGTTTGACCACATTTTAGCAATGCTTGGTGATTTTCTTTTATAAATTGTGAAAAAGTACTTGGATGAAATGAAATGTCTAGGTTGAGTTAGTTTTGATGCTTTTCTTTAATAGATTCAGAAGTTTTTTTTTTCTTCTCTTTATACTGCATGTTGCTGTTATTCTCTTCCTTTTGAAATGCTACTAGAATGACCTTTCATAATGCTTATTTTCTTCTACAATTTTACAGTGTGGTGATATTCTTGATACTTCAATGGCATTTCTTGAACATCCTAGTTCAGGCGAATACTCTGCATCAAAATTGTTGAAATCAACGCATGGTAATGTTCCTGGAAGCACCTGTTTTCTATCTTTAAAGAATGGTGAAATCGAAGACAACAACGAGAGTACCTTTCGAGATGATTTTGGGGGATTAGAGGCATCCTCTTGTGATTCAACTGCAGATATATCTTTGGAGACGATCAATTGTATTGAAATTTCTAGTTTACCTTCCACTATAAGAAAACGCAAAAACCAGTATCATCCAAGACCAGCCATCTTCATGTCGAAAAGAGCTGCTTTAAGAGGATCTTGA

Protein sequence

>MS.gene08494.t1

MTTFFPPTLDHVPVGFRFRPTDEELVSHYLKNKLLDNDSIVNNVIPEVDVCKYEPWELPACSVVKSDDPEWFFLCPIDYKYAKSKRFKRTTNNGFWKATGKDRKIKVRGSNNIIGIKKTLVYYSGRVPGVKSSWVIHEYHDTTFEDDKRTFVLCRLMKKAEKKAEKEADADICDEGEPSRHMSSDHENKETFEGIPDVGDTLPEINMESIFQAQAEKYLPSISENEQEVSNPNSPIHDAYFRNDNIIVQSPFETIEEEDKFVSSMIIDGDLDNAHVQSESLKMVYYGSSDTDAEVVSMPVGDTLPEINMESIFQAQAEKYLPSISENEQEVSIPNSPIHDAYFRNDNIIVQSPFDTIEEEDKFVSSMIIDGDLDNAHVQSESLKMVYYGSSDTDAEVVSTPCGDILDTSMAFLEHPSSGEYSASKLLKSTHGNVPGSTCFLSLKNGEIEDNNESTFRDDFGGLEASSCDSTADISLETINCIEISSLPSTIRKRKNQYHPRPAIFMSKRAALRGS