AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08540.t1 MTR_8g080680 90.582 361 34 0 1 361 37 397 0.0 675
MS.gene08540.t1 MTR_8g080690 67.347 343 88 4 1 322 37 376 1.52e-151 432
MS.gene08540.t1 MTR_8g080670 61.538 390 88 2 1 344 37 410 9.48e-150 429
MS.gene08540.t1 MTR_3g085180 47.395 403 163 7 1 364 36 428 3.01e-102 308
MS.gene08540.t1 MTR_1g053715 33.333 324 166 11 42 347 18 309 9.08e-35 131
MS.gene08540.t1 MTR_7g092930 35.798 257 136 6 47 294 17 253 2.49e-34 129
MS.gene08540.t1 MTR_7g444860 43.312 157 72 4 12 168 82 221 8.73e-31 119
MS.gene08540.t1 MTR_3g099080 45.113 133 71 1 75 207 77 207 1.60e-30 120
MS.gene08540.t1 MTR_8g463140 63.158 76 28 0 93 168 62 137 1.21e-29 112
MS.gene08540.t1 MTR_4g088555 67.105 76 25 0 93 168 60 135 1.56e-29 111
MS.gene08540.t1 MTR_5g046670 42.400 125 71 1 44 168 193 316 6.48e-28 114
MS.gene08540.t1 MTR_8g005960 49.194 124 52 3 45 168 147 259 9.35e-28 111
MS.gene08540.t1 MTR_4g109770 56.977 86 35 1 96 181 123 206 3.20e-27 112
MS.gene08540.t1 MTR_2g078770 60.000 75 30 0 94 168 56 130 5.59e-27 105
MS.gene08540.t1 MTR_8g096780 34.404 218 108 4 96 285 99 309 1.78e-26 109
MS.gene08540.t1 MTR_2g461920 61.644 73 28 0 96 168 171 243 9.89e-26 108
MS.gene08540.t1 MTR_2g014200 57.895 76 32 0 93 168 61 136 1.31e-25 100
MS.gene08540.t1 MTR_7g028740 57.534 73 31 0 96 168 77 149 7.72e-25 104
MS.gene08540.t1 MTR_1g035010 47.573 103 52 1 68 168 74 176 8.48e-24 103
MS.gene08540.t1 MTR_1g086250 56.250 80 35 0 96 175 147 226 1.21e-23 103
MS.gene08540.t1 MTR_2g046550 57.895 76 32 0 96 171 139 214 2.75e-23 102
MS.gene08540.t1 MTR_7g110320 49.000 100 51 0 81 180 130 229 3.02e-23 102
MS.gene08540.t1 MTR_7g110320 49.000 100 51 0 81 180 130 229 4.70e-23 101
MS.gene08540.t1 MTR_2g020620 34.524 168 91 5 103 263 97 252 2.45e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08540.t1 AT1G27370 40.000 265 144 8 39 294 119 377 3.68e-45 160
MS.gene08540.t1 AT1G27370 40.000 265 144 8 39 294 119 377 3.68e-45 160
MS.gene08540.t1 AT1G27370 40.000 265 144 8 39 294 119 377 3.68e-45 160
MS.gene08540.t1 AT1G27370 40.000 265 144 8 39 294 119 377 3.68e-45 160
MS.gene08540.t1 AT1G27370 40.000 265 144 8 39 294 119 377 3.68e-45 160
MS.gene08540.t1 AT1G27370 40.000 265 144 8 39 294 119 377 3.68e-45 160
MS.gene08540.t1 AT1G27370 58.779 131 52 2 39 168 119 248 7.88e-44 155
MS.gene08540.t1 AT5G43270 61.194 134 50 2 36 168 109 241 1.49e-42 153
MS.gene08540.t1 AT5G43270 61.194 134 50 2 36 168 109 241 1.49e-42 153
MS.gene08540.t1 AT5G43270 61.194 134 50 2 36 168 109 241 1.49e-42 153
MS.gene08540.t1 AT1G27360 38.628 277 160 7 17 286 97 370 1.22e-41 150
MS.gene08540.t1 AT1G27360 38.628 277 160 7 17 286 97 370 1.22e-41 150
MS.gene08540.t1 AT1G27360 38.628 277 160 7 17 286 97 370 1.22e-41 150
MS.gene08540.t1 AT1G27360 38.628 277 160 7 17 286 97 370 1.22e-41 150
MS.gene08540.t1 AT2G42200 32.271 251 140 7 94 328 72 308 1.95e-31 122
MS.gene08540.t1 AT3G57920 31.210 314 164 13 47 350 27 298 1.31e-29 117
MS.gene08540.t1 AT1G69170 65.333 75 26 0 94 168 122 196 3.36e-29 117
MS.gene08540.t1 AT1G02065 46.923 130 59 1 45 174 147 266 2.72e-28 113
MS.gene08540.t1 AT2G33810 56.667 90 37 1 79 168 39 126 3.01e-27 105
MS.gene08540.t1 AT1G53160 61.644 73 28 0 96 168 54 126 2.11e-25 101
MS.gene08540.t1 AT1G53160 61.644 73 28 0 96 168 54 126 2.33e-25 101
MS.gene08540.t1 AT1G53160 61.644 73 28 0 96 168 54 126 2.33e-25 101
MS.gene08540.t1 AT3G15270 57.534 73 31 0 96 168 63 135 2.55e-24 98.6
MS.gene08540.t1 AT1G76580 53.933 89 41 0 94 182 112 200 2.71e-24 105
MS.gene08540.t1 AT1G76580 53.933 89 41 0 94 182 112 200 2.77e-24 104
MS.gene08540.t1 AT1G76580 35.233 193 119 3 94 281 112 303 3.34e-24 104
MS.gene08540.t1 AT5G50670 51.807 83 40 0 86 168 91 173 7.48e-24 101
MS.gene08540.t1 AT5G50670 51.807 83 40 0 86 168 91 173 7.48e-24 101
MS.gene08540.t1 AT5G50570 51.807 83 40 0 86 168 91 173 7.48e-24 101
MS.gene08540.t1 AT5G50570 51.807 83 40 0 86 168 91 173 7.48e-24 101
MS.gene08540.t1 AT3G60030 58.904 73 30 0 96 168 127 199 1.15e-23 103
MS.gene08540.t1 AT2G47070 60.274 73 29 0 96 168 106 178 1.50e-23 102
MS.gene08540.t1 AT1G20980 58.667 75 31 0 94 168 118 192 6.23e-23 101
MS.gene08540.t1 AT5G18830 42.727 110 53 2 59 168 111 210 3.36e-19 89.7
MS.gene08540.t1 AT5G18830 42.727 110 53 2 59 168 111 210 3.52e-19 89.7
MS.gene08540.t1 AT5G18830 42.727 110 53 2 59 168 111 210 4.00e-19 89.7
MS.gene08540.t1 AT1G02065 43.434 99 46 2 45 143 147 235 2.62e-17 80.9
MS.gene08540.t1 AT2G47070 58.333 48 20 0 121 168 2 49 1.28e-11 66.6

Find 65 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGATGTAAAATGGAAAT+TGG 0.200557 4.2:-14106339 None:intergenic
CATGATCTGTTTGAGTTTGA+TGG 0.225842 4.2:+14105307 MS.gene08540:CDS
CCAAACCTTTCTTGTGTATC+TGG 0.244468 4.2:+14104788 MS.gene08540:CDS
GAAGGACTTTGGATGTAAAA+TGG 0.246221 4.2:-14106346 None:intergenic
CCCGGTGGAGGTGGTTCTTC+TGG 0.267974 4.2:+14104731 MS.gene08540:CDS
CTTGACCGAGAAATCAATTT+CGG 0.268342 4.2:+14104695 MS.gene08540:CDS
TTCAAAGAACCTTATGAGTA+TGG 0.284972 4.2:+14106731 MS.gene08540:CDS
TCAATCTAAGACTTGGTAAA+AGG 0.294020 4.2:+14104822 MS.gene08540:CDS
TCTGGCTCTGAGTTAATTCA+TGG 0.303523 4.2:+14104749 MS.gene08540:CDS
TATAACCACCATGGGAGATT+TGG 0.333181 4.2:-14105053 None:intergenic
ATAAAGCTGATTGGCTTGAT+TGG 0.333859 4.2:-14105402 None:intergenic
ATTAGAATGTTCTTCAGAAA+TGG 0.343450 4.2:-14106549 None:intergenic
GCAGTCTTGGAATTAGAAAA+TGG 0.356442 4.2:-14106194 None:intergenic
AGCTTTACCTGCTACATTGC+TGG 0.356873 4.2:-14105099 None:intergenic
TCTCCCATGGTGGTTATAGA+TGG 0.357918 4.2:+14105058 MS.gene08540:CDS
CATGGTGGTTATAGATGGTT+TGG 0.360015 4.2:+14105063 MS.gene08540:CDS
TTGACCGAGAAATCAATTTC+GGG 0.364920 4.2:+14104696 MS.gene08540:CDS
ACAACCCGAAATTGATTTCT+CGG 0.376943 4.2:-14104700 None:intergenic
CTGATTCATTGCATGAGTTA+TGG 0.392149 4.2:-14106594 None:intergenic
GGCTAAATTTGTAGCAGTCT+TGG 0.413824 4.2:-14106207 None:intergenic
ACTCTTGGTTGGAAGGACTT+TGG 0.430559 4.2:-14106357 None:intergenic
CATCAAACTCAAACAGATCA+TGG 0.444519 4.2:-14105306 None:intergenic
CAGCTTGACGATGATATATA+CGG 0.462985 4.2:-14105378 None:intergenic
CCACCACGCTGCCAGGTTGA+AGG 0.471978 4.2:+14104965 MS.gene08540:CDS
CGCATATGAATCCCACTGAT+TGG 0.473627 4.2:-14106519 None:intergenic
CCAGATACACAAGAAAGGTT+TGG 0.481067 4.2:-14104788 None:intergenic
CTCTTGCTTCATCAGAGCCA+TGG 0.481784 4.2:+14106624 MS.gene08540:CDS
GTGAATAAGATAAAGCTGAT+TGG 0.481792 4.2:-14105411 None:intergenic
GCCAGAAGAACCACCTCCAC+CGG 0.484703 4.2:-14104732 None:intergenic
AACATTCATGTTAACCCAGC+TGG 0.488020 4.2:-14106760 None:intergenic
GATTGATACTCTTGGTTGGA+AGG 0.496148 4.2:-14106364 None:intergenic
TGGTGAAAACCATACTCATA+AGG 0.504888 4.2:-14106740 None:intergenic
ACAATGTCCACCACGCTGCC+AGG 0.516200 4.2:+14104958 MS.gene08540:CDS
TATGATACACCCGGTGGAGG+TGG 0.516299 4.2:+14104722 MS.gene08540:CDS
ACATTGTAAGTTCTGACCAT+TGG 0.517425 4.2:-14104942 None:intergenic
GCTTTATCTTATTCACGCAA+TGG 0.532317 4.2:+14105418 MS.gene08540:CDS
GAAAGCATATTGACAGTACT+TGG 0.532864 4.2:-14106308 None:intergenic
ATAACCTGGATTGATACTCT+TGG 0.533141 4.2:-14106372 None:intergenic
GATACACAAGAAAGGTTTGG+TGG 0.536044 4.2:-14104785 None:intergenic
CCTGGATTGATACTCTTGGT+TGG 0.537469 4.2:-14106368 None:intergenic
AACTTTCAAATCACAATGCA+AGG 0.545524 4.2:+14105353 MS.gene08540:CDS
AGTTATGGCTTGAAAAGCAC+TGG 0.554669 4.2:-14106579 None:intergenic
CCATTGCTCAATCTAAGACT+TGG 0.554906 4.2:+14104815 MS.gene08540:CDS
GTTCACCAGATACACAAGAA+AGG 0.558590 4.2:-14104793 None:intergenic
TTGTATGATACACCCGGTGG+AGG 0.575298 4.2:+14104719 MS.gene08540:CDS
CCAACCAAGAGTATCAATCC+AGG 0.578039 4.2:+14106368 MS.gene08540:CDS
GAAAAGAAATGCAAGTCCAA+TGG 0.587403 4.2:+14104926 MS.gene08540:CDS
CCAAGTCTTAGATTGAGCAA+TGG 0.590002 4.2:-14104815 None:intergenic
CAAGAGCACAACCTTCAACC+TGG 0.591018 4.2:-14104976 None:intergenic
CCAGAAGAACCACCTCCACC+GGG 0.592307 4.2:-14104731 None:intergenic
AATATGTCAATTCCAACATG+TGG 0.594822 4.2:+14106663 MS.gene08540:CDS
CTCTTCTGTCAACCAATCAG+TGG 0.597609 4.2:+14106507 MS.gene08540:CDS
TCTTCTGTCAACCAATCAGT+GGG 0.601400 4.2:+14106508 MS.gene08540:CDS
AGACTGCTACAAATTTAGCC+TGG 0.607461 4.2:+14106210 MS.gene08540:CDS
AAACCATCTATAACCACCAT+GGG 0.608088 4.2:-14105061 None:intergenic
CCTTCAACCTGGCAGCGTGG+TGG 0.616962 4.2:-14104965 None:intergenic
AGAGTTTGAGATCCACATGT+TGG 0.619666 4.2:-14106675 None:intergenic
TTCGGGTTGTATGATACACC+CGG 0.621273 4.2:+14104713 MS.gene08540:CDS
CAAACCATCTATAACCACCA+TGG 0.633030 4.2:-14105062 None:intergenic
AAGTCATGCCAAATCTCCCA+TGG 0.638950 4.2:+14105045 MS.gene08540:CDS
CAACCTTCAACCTGGCAGCG+TGG 0.648763 4.2:-14104968 None:intergenic
CATGGCTCTGATGAAGCAAG+AGG 0.663007 4.2:-14106623 None:intergenic
TGATCATGATCACTACACCA+TGG 0.714032 4.2:-14106641 None:intergenic
TCATGCCAAATCTCCCATGG+TGG 0.722301 4.2:+14105048 MS.gene08540:CDS
GGGTTGTATGATACACCCGG+TGG 0.728686 4.2:+14104716 MS.gene08540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTCATAGATCTTAT+TGG + chr4.2:14105764-14105783 MS.gene08540:intron 15.0%
!!! TTCTATCTTCTAATATATTT+TGG + chr4.2:14106143-14106162 MS.gene08540:intron 15.0%
!! AATCTAGTTAGTAAATACTT+CGG - chr4.2:14105957-14105976 None:intergenic 20.0%
!!! CAAAAATCTTTCTTTTTCAA+GGG + chr4.2:14104880-14104899 MS.gene08540:CDS 20.0%
!!! TAGATAGTTGATTTAGTTAA+AGG + chr4.2:14105844-14105863 MS.gene08540:intron 20.0%
! AAAAAATCAGCACAAAAATG+TGG - chr4.2:14106411-14106430 None:intergenic 25.0%
! ATGAAATGTAGAAATCTAAG+AGG + chr4.2:14105520-14105539 MS.gene08540:intron 25.0%
! ATTAGAATGTTCTTCAGAAA+TGG - chr4.2:14106552-14106571 None:intergenic 25.0%
! TTTGGATGTAAAATGGAAAT+TGG - chr4.2:14106342-14106361 None:intergenic 25.0%
!! CCTTGAAAAAGAAAGATTTT+TGG - chr4.2:14104882-14104901 None:intergenic 25.0%
!!! AGTTGTATTTTTACTAAACC+AGG - chr4.2:14106005-14106024 None:intergenic 25.0%
!!! ATGATTAAACTTTTGAGTTG+TGG + chr4.2:14105819-14105838 MS.gene08540:intron 25.0%
!!! CCAAAAATCTTTCTTTTTCA+AGG + chr4.2:14104879-14104898 MS.gene08540:CDS 25.0%
!!! TGATTTTTTTTTACTCTTGC+AGG + chr4.2:14106422-14106441 MS.gene08540:intron 25.0%
AAACTCTTGAGTAAATAAGC+AGG - chr4.2:14105643-14105662 None:intergenic 30.0%
AAATGAACAGAACTTACAAG+AGG - chr4.2:14105741-14105760 None:intergenic 30.0%
AACTTTCAAATCACAATGCA+AGG + chr4.2:14105353-14105372 MS.gene08540:CDS 30.0%
AATATGTCAATTCCAACATG+TGG + chr4.2:14106663-14106682 MS.gene08540:CDS 30.0%
CTTACAAGAGGTTAAAAGAT+AGG - chr4.2:14105729-14105748 None:intergenic 30.0%
GCAATGTTAATAGTCAACTA+AGG - chr4.2:14105566-14105585 None:intergenic 30.0%
GTGAATAAGATAAAGCTGAT+TGG - chr4.2:14105414-14105433 None:intergenic 30.0%
TTATCCTGATTGTTAGAGTT+TGG + chr4.2:14105903-14105922 MS.gene08540:intron 30.0%
TTCAAAGAACCTTATGAGTA+TGG + chr4.2:14106731-14106750 MS.gene08540:CDS 30.0%
! ATTTTCAATCGTCATACATC+TGG + chr4.2:14105787-14105806 MS.gene08540:intron 30.0%
! CACTTTTCTTAAAATGCTGA+AGG + chr4.2:14105281-14105300 MS.gene08540:intron 30.0%
! TCAATCTAAGACTTGGTAAA+AGG + chr4.2:14104822-14104841 MS.gene08540:CDS 30.0%
! TGGTAAAAGGATGTATTTTG+AGG + chr4.2:14104835-14104854 MS.gene08540:CDS 30.0%
! TTTGCGATGATAATCTTTTG+CGG - chr4.2:14105011-14105030 None:intergenic 30.0%
!! AATCTAATTCTACTTGCTGT+TGG + chr4.2:14105231-14105250 MS.gene08540:intron 30.0%
!!! AGATTTTTGGAATCACTTTC+TGG - chr4.2:14104869-14104888 None:intergenic 30.0%
AAACCATCTATAACCACCAT+GGG - chr4.2:14105064-14105083 None:intergenic 35.0%
AACCAAAAGTGGATGTTCTT+TGG - chr4.2:14106055-14106074 None:intergenic 35.0%
ACCTATGAAACAACCAAAAG+TGG - chr4.2:14106066-14106085 None:intergenic 35.0%
ATAACCTGGATTGATACTCT+TGG - chr4.2:14106375-14106394 None:intergenic 35.0%
ATGTCCAAACTCTAACAATC+AGG - chr4.2:14105910-14105929 None:intergenic 35.0%
CAGCTTGACGATGATATATA+CGG - chr4.2:14105381-14105400 None:intergenic 35.0%
CATCAAACTCAAACAGATCA+TGG - chr4.2:14105309-14105328 None:intergenic 35.0%
CTAAACCAGGTATTAACGAA+TGG - chr4.2:14105992-14106011 None:intergenic 35.0%
CTGATTCATTGCATGAGTTA+TGG - chr4.2:14106597-14106616 None:intergenic 35.0%
CTTGACCGAGAAATCAATTT+CGG + chr4.2:14104695-14104714 MS.gene08540:CDS 35.0%
GAAAAGAAATGCAAGTCCAA+TGG + chr4.2:14104926-14104945 MS.gene08540:CDS 35.0%
GAAGGACTTTGGATGTAAAA+TGG - chr4.2:14106349-14106368 None:intergenic 35.0%
GCAATAAACGTGAAATAACC+TGG - chr4.2:14106389-14106408 None:intergenic 35.0%
GCAGTCTTGGAATTAGAAAA+TGG - chr4.2:14106197-14106216 None:intergenic 35.0%
GCTTTATCTTATTCACGCAA+TGG + chr4.2:14105418-14105437 MS.gene08540:CDS 35.0%
GTTAGTAAATACTTCGGCTT+AGG - chr4.2:14105951-14105970 None:intergenic 35.0%
TGGTGAAAACCATACTCATA+AGG - chr4.2:14106743-14106762 None:intergenic 35.0%
TTGACCGAGAAATCAATTTC+GGG + chr4.2:14104696-14104715 MS.gene08540:CDS 35.0%
! AAGGGAAAATCTTTTGCTTG+GGG - chr4.2:14106260-14106279 None:intergenic 35.0%
! ACAACCCGAAATTGATTTCT+CGG - chr4.2:14104703-14104722 None:intergenic 35.0%
! ACATTGTAAGTTCTGACCAT+TGG - chr4.2:14104945-14104964 None:intergenic 35.0%
! CAAGGGAAAATCTTTTGCTT+GGG - chr4.2:14106261-14106280 None:intergenic 35.0%
! CATGATCTGTTTGAGTTTGA+TGG + chr4.2:14105307-14105326 MS.gene08540:CDS 35.0%
! GAAAGCATATTGACAGTACT+TGG - chr4.2:14106311-14106330 None:intergenic 35.0%
! TCAAGGGAAAATCTTTTGCT+TGG - chr4.2:14106262-14106281 None:intergenic 35.0%
!! ATAAAGCTGATTGGCTTGAT+TGG - chr4.2:14105405-14105424 None:intergenic 35.0%
!! TCCACTTTTGGTTGTTTCAT+AGG + chr4.2:14106062-14106081 MS.gene08540:intron 35.0%
AGACTGCTACAAATTTAGCC+TGG + chr4.2:14106210-14106229 MS.gene08540:CDS 40.0%
CAAACCATCTATAACCACCA+TGG - chr4.2:14105065-14105084 None:intergenic 40.0%
CAACTAAGGCATGCATAACA+TGG - chr4.2:14105552-14105571 None:intergenic 40.0%
CATGGTGGTTATAGATGGTT+TGG + chr4.2:14105063-14105082 MS.gene08540:CDS 40.0%
CCAAACCTTTCTTGTGTATC+TGG + chr4.2:14104788-14104807 MS.gene08540:CDS 40.0%
CCAAGTCTTAGATTGAGCAA+TGG - chr4.2:14104818-14104837 None:intergenic 40.0%
CCAGATACACAAGAAAGGTT+TGG - chr4.2:14104791-14104810 None:intergenic 40.0%
GATACACAAGAAAGGTTTGG+TGG - chr4.2:14104788-14104807 None:intergenic 40.0%
GATTGATACTCTTGGTTGGA+AGG - chr4.2:14106367-14106386 None:intergenic 40.0%
GGCTAAATTTGTAGCAGTCT+TGG - chr4.2:14106210-14106229 None:intergenic 40.0%
GTATGCCATTCGTTAATACC+TGG + chr4.2:14105984-14106003 MS.gene08540:intron 40.0%
GTTCACCAGATACACAAGAA+AGG - chr4.2:14104796-14104815 None:intergenic 40.0%
TATAACCACCATGGGAGATT+TGG - chr4.2:14105056-14105075 None:intergenic 40.0%
TCAATCGTCATACATCTGGA+TGG + chr4.2:14105791-14105810 MS.gene08540:intron 40.0%
TCTTCTGTCAACCAATCAGT+GGG + chr4.2:14106508-14106527 MS.gene08540:CDS 40.0%
TGATCATGATCACTACACCA+TGG - chr4.2:14106644-14106663 None:intergenic 40.0%
! AATGTCTCGTGTAACTTGCA+AGG - chr4.2:14105667-14105686 None:intergenic 40.0%
! AGAGTTTGAGATCCACATGT+TGG - chr4.2:14106678-14106697 None:intergenic 40.0%
! AGGGAAAATCTTTTGCTTGG+GGG - chr4.2:14106259-14106278 None:intergenic 40.0%
! AGTTATGGCTTGAAAAGCAC+TGG - chr4.2:14106582-14106601 None:intergenic 40.0%
! CCATTGCTCAATCTAAGACT+TGG + chr4.2:14104815-14104834 MS.gene08540:CDS 40.0%
! GACCAAAGAACATCCACTTT+TGG + chr4.2:14106050-14106069 MS.gene08540:intron 40.0%
! GTGTCAATGTTGTCTTTTGC+AGG - chr4.2:14106287-14106306 None:intergenic 40.0%
! TTGTCTTTTGCAGGCTTCAA+GGG - chr4.2:14106278-14106297 None:intergenic 40.0%
!! TCTGGCTCTGAGTTAATTCA+TGG + chr4.2:14104749-14104768 MS.gene08540:CDS 40.0%
AAGTCATGCCAAATCTCCCA+TGG + chr4.2:14105045-14105064 MS.gene08540:CDS 45.0%
ACTCTTGGTTGGAAGGACTT+TGG - chr4.2:14106360-14106379 None:intergenic 45.0%
AGCTTTACCTGCTACATTGC+TGG - chr4.2:14105102-14105121 None:intergenic 45.0%
CCTGGATTGATACTCTTGGT+TGG - chr4.2:14106371-14106390 None:intergenic 45.0%
CGCATATGAATCCCACTGAT+TGG - chr4.2:14106522-14106541 None:intergenic 45.0%
CTCTTCTGTCAACCAATCAG+TGG + chr4.2:14106507-14106526 MS.gene08540:CDS 45.0%
TCTCCCATGGTGGTTATAGA+TGG + chr4.2:14105058-14105077 MS.gene08540:CDS 45.0%
! GAGTATGGTTTTCACCAGCT+GGG + chr4.2:14106746-14106765 MS.gene08540:CDS 45.0%
! GATTTTGCCAGCAATGTAGC+AGG + chr4.2:14105092-14105111 MS.gene08540:CDS 45.0%
! GTTGTCTTTTGCAGGCTTCA+AGG - chr4.2:14106279-14106298 None:intergenic 45.0%
! TGAGTATGGTTTTCACCAGC+TGG + chr4.2:14106745-14106764 MS.gene08540:CDS 45.0%
!! CCAACCAAGAGTATCAATCC+AGG + chr4.2:14106368-14106387 MS.gene08540:CDS 45.0%
!! TTCGGGTTGTATGATACACC+CGG + chr4.2:14104713-14104732 MS.gene08540:CDS 45.0%
AGCAGGACAGCAAAGAAGAG+TGG - chr4.2:14105626-14105645 None:intergenic 50.0%
CTCTTGCTTCATCAGAGCCA+TGG + chr4.2:14106624-14106643 MS.gene08540:CDS 50.0%
TCATGCCAAATCTCCCATGG+TGG + chr4.2:14105048-14105067 MS.gene08540:CDS 50.0%
TTGTATGATACACCCGGTGG+AGG + chr4.2:14104719-14104738 MS.gene08540:CDS 50.0%
! CAAGAGCACAACCTTCAACC+TGG - chr4.2:14104979-14104998 None:intergenic 50.0%
! GCTGTTGTGCATGTTTTGCC+AGG - chr4.2:14106231-14106250 None:intergenic 50.0%
!! CATGGCTCTGATGAAGCAAG+AGG - chr4.2:14106626-14106645 None:intergenic 50.0%
GGGTTGTATGATACACCCGG+TGG + chr4.2:14104716-14104735 MS.gene08540:CDS 55.0%
TATGATACACCCGGTGGAGG+TGG + chr4.2:14104722-14104741 MS.gene08540:CDS 55.0%
ACAATGTCCACCACGCTGCC+AGG + chr4.2:14104958-14104977 MS.gene08540:CDS 60.0%
CAACCTTCAACCTGGCAGCG+TGG - chr4.2:14104971-14104990 None:intergenic 60.0%
CCAGAAGAACCACCTCCACC+GGG - chr4.2:14104734-14104753 None:intergenic 60.0%
GCCAGAAGAACCACCTCCAC+CGG - chr4.2:14104735-14104754 None:intergenic 60.0%
CCCGGTGGAGGTGGTTCTTC+TGG + chr4.2:14104731-14104750 MS.gene08540:CDS 65.0%
CCTTCAACCTGGCAGCGTGG+TGG - chr4.2:14104968-14104987 None:intergenic 65.0%
! CCACCACGCTGCCAGGTTGA+AGG + chr4.2:14104965-14104984 MS.gene08540:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 14104689 14106772 14104689 ID=MS.gene08540
chr4.2 mRNA 14104689 14106772 14104689 ID=MS.gene08540.t1;Parent=MS.gene08540
chr4.2 exon 14104689 14105113 14104689 ID=MS.gene08540.t1.exon1;Parent=MS.gene08540.t1
chr4.2 CDS 14104689 14105113 14104689 ID=cds.MS.gene08540.t1;Parent=MS.gene08540.t1
chr4.2 exon 14105303 14105439 14105303 ID=MS.gene08540.t1.exon2;Parent=MS.gene08540.t1
chr4.2 CDS 14105303 14105439 14105303 ID=cds.MS.gene08540.t1;Parent=MS.gene08540.t1
chr4.2 exon 14106174 14106389 14106174 ID=MS.gene08540.t1.exon3;Parent=MS.gene08540.t1
chr4.2 CDS 14106174 14106389 14106174 ID=cds.MS.gene08540.t1;Parent=MS.gene08540.t1
chr4.2 exon 14106444 14106772 14106444 ID=MS.gene08540.t1.exon4;Parent=MS.gene08540.t1
chr4.2 CDS 14106444 14106772 14106444 ID=cds.MS.gene08540.t1;Parent=MS.gene08540.t1
Gene Sequence

>MS.gene08540

ATGGAACTTGACCGAGAAATCAATTTCGGGTTGTATGATACACCCGGTGGAGGTGGTTCTTCTGGCTCTGAGTTAATTCATGGTTCAGCATTTAATCCACCAAACCTTTCTTGTGTATCTGGTGAACCATTGCTCAATCTAAGACTTGGTAAAAGGATGTATTTTGAGGAAGTTTGTCCAGAAAGTGATTCCAAAAATCTTTCTTTTTCAAGGGATCTCATGTCATCTTCAATTCTTGAAAAGAAATGCAAGTCCAATGGTCAGAACTTACAATGTCCACCACGCTGCCAGGTTGAAGGTTGTGCTCTTGATCTTTCATCCGCAAAAGATTATCATCGCAAACGAAGAGTTTGTGAAAGTCATGCCAAATCTCCCATGGTGGTTATAGATGGTTTGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTAAAGCTTCTTAACAACTGTATAATTGTTTAGATCTAATTGACATAGAAAATAATAGTATTTTTTTCGAATGATGAATTCTTGTTAGCACATCATTAAAAGCTAATATTACTACTCAATCTAATTCTACTTGCTGTTGGTGTTGAATAAATTGCTCTAGAATTGATCACTTTTCTTAAAATGCTGAAGGTTCCATGATCTGTTTGAGTTTGATGGAAAGAAGAAAAGCTGCAGACGACAACTTTCAAATCACAATGCAAGGCGCCGTATATATCATCGTCAAGCTGTCCAATCAAGCCAATCAGCTTTATCTTATTCACGCAATGGTAATACTTATTTTTCTCTGATTTTGCAGTTTATCTCAGTTCATGCTTGTTATCTGTTTTTGATTGTTAAAGCTGAAAAAATGAAATGTAGAAATCTAAGAGGCTAAGACCATGTTATGCATGCCTTAGTTGACTATTAACATTGCTGAATGAAAACTGTTTGAAAAATTGAAATGCTTAACACCACTCTTCTTTGCTGTCCTGCTTATTTACTCAAGAGTTTGCCTTGCAAGTTACACGAGACATTAAATGTAATGCAACAGAACTTCTTAATTTTCTACAATTGCCTATCTTTTAACCTCTTGTAAGTTCTGTTCATTTTTCATTTATTTCATAGATCTTATTGGATTTTCAATCGTCATACATCTGGATGGTAAACATGATTAAACTTTTGAGTTGTGGACTAGATAGTTGATTTAGTTAAAGGCATAGCGTACTCTTGATTACAGAATTACACAAATCATTATCCTGATTGTTAGAGTTTGGACATGAGCGCGAGTATAACATTCCTAAGCCGAAGTATTTACTAACTAGATTTGTATGAGTATGCCATTCGTTAATACCTGGTTTAGTAAAAATACAACTTCAAATTGCTGTTAGTCAAAACTTAGACCAAAGAACATCCACTTTTGGTTGTTTCATAGGTTTATTATAGTTAATTGCAAGTCATTCATTTCTCAATGATTCAAATTTTACTGTTGTCTTCTATCTTCTAATATATTTTGGTTCTGCAGATGAGAAGCAACAGATGAGTCCATTTTCTAATTCCAAGACTGCTACAAATTTAGCCTGGCAAAACATGCACAACAGCAAGCTCCCCCAAGCAAAAGATTTTCCCTTGAAGCCTGCAAAAGACAACATTGACACACCAAGTACTGTCAATATGCTTTCTCATGATTCCAATTTCCATTTTACATCCAAAGTCCTTCCAACCAAGAGTATCAATCCAGGTTATTTCACGTTTATTGCCACATTTTTGTGCTGATTTTTTTTTACTCTTGCAGGTGTAGAAGATTTCATGAACTTTTCTGATACAAATGCTACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCAATCAGTGGGATTCATATGCGACTAAATCCATTTCTGAAGAACATTCTAATCGCTCGACCAGTGCTTTTCAAGCCATAACTCATGCAATGAATCAGCGCATTCCTCTTGCTTCATCAGAGCCATGGTGTAGTGATCATGATCAATATGTCAATTCCAACATGTGGATCTCAAACTCTGCAGATAGCAATCACTTTCAGAAATTTCAACTGTTCAAAGAACCTTATGAGTATGGTTTTCACCAGCTGGGTTAA
Protein sequence

>MS.gene08540.t1

MELDREINFGLYDTPGGGGSSGSELIHGSAFNPPNLSCVSGEPLLNLRLGKRMYFEEVCPESDSKNLSFSRDLMSSSILEKKCKSNGQNLQCPPRCQVEGCALDLSSAKDYHRKRRVCESHAKSPMVVIDGLERRFCQQCSRFHDLFEFDGKKKSCRRQLSNHNARRRIYHRQAVQSSQSALSYSRNDEKQQMSPFSNSKTATNLAWQNMHNSKLPQAKDFPLKPAKDNIDTPSTVNMLSHDSNFHFTSKVLPTKSINPGVEDFMNFSDTNATQDFTCALSLLSTNQWDSYATKSISEEHSNRSTSAFQAITHAMNQRIPLASSEPWCSDHDQYVNSNMWISNSADSNHFQKFQLFKEPYEYGFHQLG