AlfalfaGEDB | MS.gene08977

M. sativa cultivar XinJiangDaYe / MS.gene08977

KEGG: K09419
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08977.t1	XP_003629611.1	98.6	487	7	0	1	487	1	487	9.70E-263	915.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08977.t1	Q94BZ5	52.3	470	196	7	21	487	22	466	1.5e-115	417.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08977.t1	G7LH28	98.6	487	7	0	1	487	1	487	7.0e-263	915.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene08977.t1	TF	HSF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08977.t1	MTR_8g083100	98.563	487	7	0	1	487	1	487	0.0	998
MS.gene08977.t1	MTR_2g100680	74.607	445	110	2	1	444	12	454	0.0	677
MS.gene08977.t1	MTR_6g043060	85.616	292	42	0	1	292	1	292	0.0	516
MS.gene08977.t1	MTR_6g043060	75.556	45	11	0	412	456	284	328	1.31e-14	75.1
MS.gene08977.t1	MTR_2g100670	68.792	298	73	3	1	297	14	292	4.91e-138	400
MS.gene08977.t1	MTR_2g100670	68.792	298	73	3	1	297	122	400	6.16e-136	399
MS.gene08977.t1	MTR_6g044340	62.069	232	46	2	68	299	8	197	3.12e-88	271
MS.gene08977.t1	MTR_6g044340	75.000	72	18	0	386	457	192	263	1.72e-27	111
MS.gene08977.t1	MTR_5g029680	50.935	214	91	4	19	218	29	242	9.47e-65	218
MS.gene08977.t1	MTR_8g087540	51.905	210	90	4	13	217	4	207	4.30e-63	211

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08977.t1	AT4G13980	51.107	497	202	10	1	487	1	466	3.49e-145	424
MS.gene08977.t1	AT1G32330	47.660	235	104	5	1	216	16	250	7.19e-61	207
MS.gene08977.t1	AT1G32330	47.660	235	104	5	1	216	16	250	8.11e-61	207
MS.gene08977.t1	AT4G17750	46.352	233	104	4	5	216	35	267	4.23e-60	205
MS.gene08977.t1	AT5G16820	50.000	210	90	5	22	217	27	235	2.73e-58	200
MS.gene08977.t1	AT5G16820	50.000	210	90	5	22	217	27	235	2.73e-58	200
MS.gene08977.t1	AT3G02990	46.119	219	105	4	22	228	23	240	1.42e-57	198
MS.gene08977.t1	AT4G18880	51.643	213	93	3	14	220	7	215	1.59e-55	191
MS.gene08977.t1	AT3G22830	43.662	213	106	4	19	217	58	270	3.56e-50	176
MS.gene08977.t1	AT2G26150	43.243	222	118	4	19	232	41	262	6.83e-50	174

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Find 133 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGATCCTGAGCGTT+GGG	0.472666	4.4:-14901590	MS.gene08977:CDS
AAACCGAAATGTGGCTAATG+AGG	0.502956	4.4:-14900636	MS.gene08977:CDS
AACAGCCTGGTCTTTCAGTA+AGG	0.527046	4.4:+14900519	None:intergenic
AACTCTGGCATCTTGTACAT+TGG	0.365517	4.4:-14900777	MS.gene08977:CDS
AAGATGCCCCAGTATCTGCA+AGG	0.666464	4.4:+14900921	None:intergenic
AAGTTCATATCTGAGACAGC+TGG	0.576214	4.4:+14901067	None:intergenic
AATAGGTTGGGAGAAGAACA+CGG	0.613461	4.4:+14903345	None:intergenic
AATTCCAGTCTGAAATTGCT+AGG	0.494876	4.4:+14901142	None:intergenic
AATTTCCTGACAGTTTATTT+GGG	0.297215	4.4:+14900721	None:intergenic
AATTTCCTTACTGAAAGACC+AGG	0.654469	4.4:-14900524	MS.gene08977:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAATTCTGCAGCATC+TGG	-	chr4.4:14901201-14901220	MS.gene08977:CDS	30.0%
AATTGGAGTTGCTAAATGTT+GGG	-	chr4.4:14900884-14900903	MS.gene08977:CDS	30.0%
ATGCCAGAGTTAAATTTAGT+TGG	+	chr4.4:14903132-14903151	None:intergenic	30.0%
ATTCAATAATTGCCCATGTA+TGG	+	chr4.4:14901695-14901714	None:intergenic	30.0%
ATTCCATAGGAATTCATACT+CGG	-	chr4.4:14903165-14903184	MS.gene08977:intron	30.0%
ATTTCCTGACAGTTTATTTG+GGG	+	chr4.4:14903199-14903218	None:intergenic	30.0%
CAAATAAACTGTCAGGAAAT+TGG	-	chr4.4:14903199-14903218	MS.gene08977:intron	30.0%
CAATTTCCTGACAGTTTATT+TGG	+	chr4.4:14903201-14903220	None:intergenic	30.0%
GAAATTGTTGTGCTTGAAAT+AGG	+	chr4.4:14900593-14900612	None:intergenic	30.0%
GGTTATAGTATGCACTTAAT+GGG	+	chr4.4:14901905-14901924	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	14900400	14903540	14900400	ID=MS.gene08977
chr4.4	mRNA	14900400	14903540	14900400	ID=MS.gene08977.t1;Parent=MS.gene08977
chr4.4	exon	14903298	14903540	14903298	ID=MS.gene08977.t1.exon1;Parent=MS.gene08977.t1
chr4.4	CDS	14903298	14903540	14903298	ID=cds.MS.gene08977.t1;Parent=MS.gene08977.t1
chr4.4	exon	14900400	14901620	14900400	ID=MS.gene08977.t1.exon2;Parent=MS.gene08977.t1
chr4.4	CDS	14900400	14901620	14900400	ID=cds.MS.gene08977.t1;Parent=MS.gene08977.t1

Gene Sequence

>MS.gene08977

ATGAATTCTGCACCACAATCCTCATCAGCCGCTGCCGCCGGAGGAAGCGGAGGAGGTCCGGCACCGTTTCTTCAGAAGACGTATGACATGGTGGATGATTCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATTGTTTGGAACCCTCCTGAATTCTCCCGTGTTCTTCTCCCAACCTATTTCAAGCACAACAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGTAAGTCAATTCATGCTATACGCTTCTTTTGATTGTTTCATTGTTATTTTGTATGATCAATTAGTTATTGTTTTTGTTTGATTGTTTGTTGTATTTGTATGATTTGATTTCATTGTGTCTTAGTCGAGTTTCAATTAGTGGATATTGATTGTTATGATACGATCATTAAGAGATTGATGAAAAAATCTGCTTAGTAAGATAGGAATTATGAACAAATTTAGATTTGGATTTCATTGAGTCTAATTGGAGTTGCTAAATGTTGGGACCTGAGAATGATGAAAGATGGATGAGATATTATATAGTCTTGTACGGCACTTTTATGCTACGAAGCACAAACATAGACACCGGACACAACACAAACACCTTATCGCCGACACCGACACCGACAGTGACATAATTCAGTGTTATCATACGTGTCATTGTTGTGTCGGTGTCAGACACCGACGTCAGGACACACCTAATCCGAGGATTGTCCATGCTTCGTAGGTCTTAATTTTCGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAACAATCAAAAAAAATTCTGCAGCATCTGGATCTTGGTAATGGTACATCCAGTCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCTGGTTTATTTCCTGAACTATATAAATATGATATGATGATATGGAAATAAACCAGAAATAGTGTGATATGATGATACCCGGAAAACAAAAATGTGTCAATTTAGTCTTTGAAGTATATGGAAATTCGTCAATTTTGTCTCTAACATCTTAATTGTTGTGACTTGTGACTAAATTGACGGGTTTCATATGCTTTAGAGACTACTTATCATGTTTCTATAGGGTAGAGACTAAATTTGAGATAGGGTGATAATTCAGGGACTAAATTGATGGTTTACAATCAGTGATCAAATAATTGCGCCATACAACTCGTCCTTGTTTTGGTAAAAGAGATAGAGCACTACAAAAAAGAAGTTCGCGAATGTGTCATTAACGGAAAATGACCAGTTAGAACCTGCGTCTAACCATACATGGGCAATTATTGAATTTAAGGGATTTACCCAAAATTTCCCGTGTCAGTCATGATGTGTCTGCGATGTTATTTCTTGTGACATTTCCATGAAAAAAAAAAGTTAGCTTGTTTTTCTTTTATAATTATACAAATATTACCTTATTTTCAAATCTTTCACATGGCTAACCTATGGGTGCTTTTGGAACCCTAAATGTTAAATTTTCCCATTAAGTGCATACTATAACCCAGATTTTTATTGTTTAATCCTACCTTTCTTCTGCATCGTAGACATCTCAAGCATCTAGGTTTTCATTTATTGATTGATATGATGATACCCGGAAAACAAAAATGGCAAACATCCTGTATTGTAAATTTTTATTGAACTTGTTGAAATTGATATCTAACTCTTAGATAGGATTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGGCCCACCGCCAGATTTGCTTCCTGAAGTTTTTATGTGTGTAATGAAGAATATTCTTGTAAATATTTAATGGTAAATCGTTCAAAGAAGTTTGCAGGTCTTATGGCTTTAATGATAAACAATTGTTTATGAATTTATGTTTTAATTTGTTATGGTTTATTTATATGTGCTTTTTATCAGGGATTTCGAAAAGCAGATCCTGAGCGTTGGGAGTTTGCCAATGAAGAATTTATAAAAGATCAAAAACATCTTCTGAAGAATATACACCGCAGGAAACCTATTCACAGTCATAGTCATCCTCCGGGTTCTGCTGTAGATCCAGAAAGGGCAGCATTGGAGCAAGAAATAGAGAAGCTGTCTCGCGAGAAAAATGCCCTTCAATCCAAGCTCTTAAGCTACAGTTATCTTGAGACAGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAGGATTCTTTTATTGTTGAACTTCTTTCCCGCAAAATCGAATCCATGGATTTGGCAGCTTATAATAAGAAAAGGCGATTGCCTCAGGTTGATCACGTGCAGCCTGTTGCCGAAGGTAGCTTGGTTGACAATCCTAGCAATTTCAGACTGGAATTTGGGAATGTATTCCCTCAAGATATCTCAAATAAACTCAGACTAGAATTGTCACCAGCTGTCTCAGATATGAACTTGATATCAGGTAGCACACAGGGTTCAAACGAAGATGAGGAAAGCCTGCAGAAAAATCTGTCTGAAGGAGAACTGACAGGAATGCAGACAAGAACTGGCCTTGCTTTTACCCCTGAAACACTAGACCTTGCAGATACTGGGGCATCTTTTACTTTTAACATGGATTCGTGTTTATCACAAAGAGCAACTACTACCGAGTGCCCAAATCTTCATTCTCTGGAGCCAAGTACTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTGGCATCTTGTACATTGGAATTCCATAGGAATTCATACTCGGCCAGGTCGCCCCAAATAAACTGTCAGGAAATTGGCAATTTGGCAGAGTCAAGAGTTAACGCTGATGGTAAAGAATCTGAAATTGGAGTTTCCACAAACCGAAATGTGGCTAATGAGGCTATCAATCTAGCTCCACCAAAGGAGGCTTCAGGTAACGTCCAAGTCAAAGCTGCTGCTCGGCACGGGGTGAATGATGTGTTTTGGGAAAATTTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTATCGAGCAATTCCAAATAGTGAGCAAGAAGAAGGGCGGTCAGTTCATGGAATCTCCAGTAACATCAAGAACATGGATAATCTCACCCTTTGA

Protein sequence

>MS.gene08977.t1

MNSAPQSSSAAAAGGSGGGPAPFLQKTYDMVDDSTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKADPERWEFANEEFIKDQKHLLKNIHRRKPIHSHSHPPGSAVDPERAALEQEIEKLSREKNALQSKLLSYSYLETEKLQLEDFQRRLDGMEKRQTNLQNFFEKALQDSFIVELLSRKIESMDLAAYNKKRRLPQVDHVQPVAEGSLVDNPSNFRLEFGNVFPQDISNKLRLELSPAVSDMNLISGSTQGSNEDEESLQKNLSEGELTGMQTRTGLAFTPETLDLADTGASFTFNMDSCLSQRATTTECPNLHSLEPSTEEGDSHISCQLNLTLASCTLEFHRNSYSARSPQINCQEIGNLAESRVNADGKESEIGVSTNRNVANEAINLAPPKEASGNVQVKAAARHGVNDVFWENFLTERPGCSDNEEAISNYRAIPNSEQEEGRSVHGISSNIKNMDNLTL