AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08977

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08977.t1 MTR_8g083100 98.563 487 7 0 1 487 1 487 0.0 998
MS.gene08977.t1 MTR_2g100680 74.607 445 110 2 1 444 12 454 0.0 677
MS.gene08977.t1 MTR_6g043060 85.616 292 42 0 1 292 1 292 0.0 516
MS.gene08977.t1 MTR_6g043060 75.556 45 11 0 412 456 284 328 1.31e-14 75.1
MS.gene08977.t1 MTR_2g100670 68.792 298 73 3 1 297 14 292 4.91e-138 400
MS.gene08977.t1 MTR_2g100670 68.792 298 73 3 1 297 122 400 6.16e-136 399
MS.gene08977.t1 MTR_6g044340 62.069 232 46 2 68 299 8 197 3.12e-88 271
MS.gene08977.t1 MTR_6g044340 75.000 72 18 0 386 457 192 263 1.72e-27 111
MS.gene08977.t1 MTR_5g029680 50.935 214 91 4 19 218 29 242 9.47e-65 218
MS.gene08977.t1 MTR_8g087540 51.905 210 90 4 13 217 4 207 4.30e-63 211
MS.gene08977.t1 MTR_6g044430 62.245 196 24 3 100 295 14 159 5.46e-63 204
MS.gene08977.t1 MTR_6g044430 54.545 121 45 3 346 457 110 229 2.24e-25 104
MS.gene08977.t1 MTR_4g077970 46.860 207 98 3 22 216 12 218 6.17e-56 194
MS.gene08977.t1 MTR_6g044440 75.397 126 18 1 174 299 1 113 1.62e-53 178
MS.gene08977.t1 MTR_6g044440 57.018 114 41 3 351 457 67 179 7.91e-29 112
MS.gene08977.t1 MTR_1g102860 46.117 206 99 5 19 215 37 239 3.93e-51 177
MS.gene08977.t1 MTR_7g095680 46.411 209 102 4 19 217 46 254 4.82e-51 177
MS.gene08977.t1 MTR_6g055650 80.000 105 17 1 220 324 49 149 6.27e-49 165
MS.gene08977.t1 MTR_3g104550 44.390 205 104 5 19 216 43 244 1.13e-48 172
MS.gene08977.t1 MTR_1g071360 44.633 177 90 2 20 195 30 199 1.49e-46 165
MS.gene08977.t1 MTR_6g055660 84.270 89 14 0 264 352 1 89 2.17e-46 156
MS.gene08977.t1 MTR_1g061170 34.528 307 190 7 22 323 49 349 2.27e-46 167
MS.gene08977.t1 MTR_1g071360 44.633 177 90 2 20 195 27 196 2.50e-46 165
MS.gene08977.t1 MTR_8g105780 48.969 194 86 6 21 201 21 214 3.75e-44 159
MS.gene08977.t1 MTR_3g101870 72.340 94 26 0 20 113 22 115 2.14e-43 157
MS.gene08977.t1 MTR_6g044350 61.538 143 24 3 174 310 1 118 2.33e-42 147
MS.gene08977.t1 MTR_6g044350 78.571 42 9 0 402 443 105 146 1.16e-15 74.3
MS.gene08977.t1 MTR_2g017890 62.037 108 41 0 12 119 5 112 4.10e-42 154
MS.gene08977.t1 MTR_5g010680 61.111 108 42 0 6 113 8 115 7.07e-42 153
MS.gene08977.t1 MTR_5g017470 61.538 104 40 0 19 122 6 109 3.55e-41 149
MS.gene08977.t1 MTR_5g089170 69.149 94 29 0 20 113 23 116 5.96e-41 147
MS.gene08977.t1 MTR_6g086805 39.286 224 103 4 21 230 10 214 1.13e-40 149
MS.gene08977.t1 MTR_0020s0020 63.830 94 34 0 20 113 31 124 5.33e-38 142
MS.gene08977.t1 MTR_1g100777 60.417 96 38 0 20 115 16 111 3.54e-37 139
MS.gene08977.t1 MTR_7g091370 51.327 113 55 0 1 113 1 113 6.95e-36 133
MS.gene08977.t1 MTR_4g088900 57.143 98 38 1 20 113 31 128 3.25e-33 125
MS.gene08977.t1 MTR_6g044500 68.421 95 11 1 205 299 1 76 7.10e-33 120
MS.gene08977.t1 MTR_6g044510 82.759 58 10 0 400 457 31 88 3.75e-25 99.4
MS.gene08977.t1 MTR_6g044510 68.085 47 14 1 264 310 1 46 4.14e-11 59.7
MS.gene08977.t1 MTR_5g047190 50.515 97 41 2 30 119 1 97 2.29e-24 97.4
MS.gene08977.t1 MTR_4g045757 67.241 58 19 0 22 79 14 71 3.55e-20 85.1
MS.gene08977.t1 MTR_1g061170 27.239 268 176 9 61 323 1 254 2.64e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08977.t1 AT4G13980 51.107 497 202 10 1 487 1 466 3.49e-145 424
MS.gene08977.t1 AT1G32330 47.660 235 104 5 1 216 16 250 7.19e-61 207
MS.gene08977.t1 AT1G32330 47.660 235 104 5 1 216 16 250 8.11e-61 207
MS.gene08977.t1 AT4G17750 46.352 233 104 4 5 216 35 267 4.23e-60 205
MS.gene08977.t1 AT5G16820 50.000 210 90 5 22 217 27 235 2.73e-58 200
MS.gene08977.t1 AT5G16820 50.000 210 90 5 22 217 27 235 2.73e-58 200
MS.gene08977.t1 AT3G02990 46.119 219 105 4 22 228 23 240 1.42e-57 198
MS.gene08977.t1 AT4G18880 51.643 213 93 3 14 220 7 215 1.59e-55 191
MS.gene08977.t1 AT3G22830 43.662 213 106 4 19 217 58 270 3.56e-50 176
MS.gene08977.t1 AT2G26150 43.243 222 118 4 19 232 41 262 6.83e-50 174
MS.gene08977.t1 AT2G26150 43.243 222 118 4 19 232 41 262 6.83e-50 174
MS.gene08977.t1 AT5G45710 46.296 216 101 4 14 224 6 211 2.08e-49 173
MS.gene08977.t1 AT5G45710 46.296 216 101 4 14 224 6 211 2.08e-49 173
MS.gene08977.t1 AT3G51910 43.478 207 101 4 14 215 21 216 8.92e-48 166
MS.gene08977.t1 AT5G43840 45.745 188 90 3 20 205 17 194 9.38e-46 161
MS.gene08977.t1 AT5G03720 45.556 180 95 2 22 198 55 234 4.29e-45 163
MS.gene08977.t1 AT5G03720 45.556 180 95 2 22 198 55 234 4.29e-45 163
MS.gene08977.t1 AT1G46264 60.504 119 37 1 14 122 26 144 6.12e-44 158
MS.gene08977.t1 AT1G67970 45.550 191 91 5 21 201 18 205 1.74e-43 158
MS.gene08977.t1 AT3G24520 44.809 183 78 4 21 202 16 176 5.66e-43 155
MS.gene08977.t1 AT3G63350 37.447 235 132 3 5 227 3 234 1.61e-42 152
MS.gene08977.t1 AT5G54070 42.029 207 109 3 18 218 67 268 2.17e-42 154
MS.gene08977.t1 AT5G62020 52.101 119 56 1 1 118 1 119 5.48e-38 141
MS.gene08977.t1 AT4G11660 62.766 94 35 0 20 113 57 150 2.56e-37 141
MS.gene08977.t1 AT4G36990 60.417 96 38 0 20 115 12 107 5.62e-37 137
MS.gene08977.t1 AT2G41690 53.846 117 54 0 20 136 38 154 1.05e-36 135
MS.gene08977.t1 AT4G18870 47.368 95 49 1 15 109 6 99 3.75e-21 94.0
MS.gene08977.t1 AT4G18870 45.455 88 48 0 22 109 146 233 5.99e-21 93.6
MS.gene08977.t1 AT1G77570 42.222 90 49 2 23 109 27 116 7.37e-18 80.9
MS.gene08977.t1 AT2G26150 35.664 143 84 4 82 216 49 191 1.47e-16 80.5
MS.gene08977.t1 AT2G26150 35.664 143 84 4 82 216 49 191 1.47e-16 80.5

Find 133 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCAATGCTGCCCTTTC+TGG -0.033953 4.4:+14901460 None:intergenic
CAATTTCCTGACAGTTTATT+TGG 0.134687 4.4:+14900720 None:intergenic
TCTGCAAGGTCTAGTGTTTC+AGG 0.179480 4.4:+14900935 None:intergenic
AGCAATTTCAGACTGGAATT+TGG 0.185327 4.4:-14901139 MS.gene08977:CDS
CCTTCTTCTTGCTCACTATT+TGG 0.197563 4.4:+14900458 None:intergenic
CTTCTTTGAGAAGGCTCTTC+AGG 0.211830 4.4:-14901293 MS.gene08977:CDS
ATCCATGTTCTTGATGTTAC+TGG 0.248725 4.4:+14900415 None:intergenic
CAAATAAACTGTCAGGAAAT+TGG 0.249049 4.4:-14900719 MS.gene08977:CDS
GGCTCCAGAGAATGAAGATT+TGG 0.274713 4.4:+14900845 None:intergenic
ACACTAGACCTTGCAGATAC+TGG 0.281618 4.4:-14900929 MS.gene08977:CDS
CTGTCAGGAAATTGGCAATT+TGG 0.285988 4.4:-14900711 MS.gene08977:CDS
GAAATTGTTGTGCTTGAAAT+AGG 0.289577 4.4:+14903328 None:intergenic
AATTTCCTGACAGTTTATTT+GGG 0.297215 4.4:+14900721 None:intergenic
ATAACAAAAGCTTCATTGTT+TGG 0.304742 4.4:-14903385 MS.gene08977:CDS
ACGGGGTGAATGATGTGTTT+TGG 0.315138 4.4:-14900550 MS.gene08977:CDS
CCACAGATGAGATCGTTTCT+TGG 0.319260 4.4:-14903415 MS.gene08977:CDS
GCAATTTCAGACTGGAATTT+GGG 0.327997 4.4:-14901138 MS.gene08977:CDS
GATGGTAAAGAATCTGAAAT+TGG 0.330710 4.4:-14900668 MS.gene08977:CDS
AGAAGAACACGGGAGAATTC+AGG 0.363985 4.4:+14903356 None:intergenic
CAAAATCGAATCCATGGATT+TGG 0.364324 4.4:-14901242 MS.gene08977:CDS
AACTCTGGCATCTTGTACAT+TGG 0.365517 4.4:-14900777 MS.gene08977:CDS
CTATCACCTTCTTCAGTACT+TGG 0.371141 4.4:+14900824 None:intergenic
GAAGAAGGGCGGTCAGTTCA+TGG 0.385884 4.4:-14900443 MS.gene08977:CDS
ATTAGCCACATTTCGGTTTG+TGG 0.388053 4.4:+14900640 None:intergenic
TCAGATATGAACTTGATATC+AGG 0.394555 4.4:-14901058 MS.gene08977:CDS
ATTTGGAATTGCTCGATAGT+TGG 0.404937 4.4:+14900475 None:intergenic
TAGCCTCATTAGCCACATTT+CGG 0.405235 4.4:+14900633 None:intergenic
TCAAAGCTGCTGCTCGGCAC+GGG 0.408584 4.4:-14900568 MS.gene08977:CDS
ACAGGAATGCAGACAAGAAC+TGG 0.408767 4.4:-14900971 MS.gene08977:CDS
GCTCCAGAGAATGAAGATTT+GGG 0.410466 4.4:+14900846 None:intergenic
CACTAGACCTTGCAGATACT+GGG 0.411215 4.4:-14900928 MS.gene08977:CDS
GCCGCTGCCGCCGGAGGAAG+CGG 0.414745 4.4:-14903491 MS.gene08977:CDS
CGGAGGAAGCGGAGGAGGTC+CGG 0.415280 4.4:-14903480 MS.gene08977:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417714 4.4:+14901172 None:intergenic
GTGCCCAAATCTTCATTCTC+TGG 0.418424 4.4:-14900849 MS.gene08977:CDS
CAGAGTTAAATTTAGTTGGC+AGG 0.423956 4.4:+14900793 None:intergenic
AGCTTAAGAGCTTGGATTGA+AGG 0.426622 4.4:+14901404 None:intergenic
ACGTTACCTGAAGCCTCCTT+TGG 0.431681 4.4:+14900596 None:intergenic
ATGCCAGAGTTAAATTTAGT+TGG 0.435087 4.4:+14900789 None:intergenic
TCCGCTTCCTCCGGCGGCAG+CGG 0.440478 4.4:+14903490 None:intergenic
ATAACTGTAGCTTAAGAGCT+TGG 0.443695 4.4:+14901396 None:intergenic
GCCGAGCAGCAGCTTTGACT+TGG 0.452625 4.4:+14900573 None:intergenic
TAAGAAAAGGCGATTGCCTC+AGG 0.456333 4.4:-14901209 MS.gene08977:CDS
TGGCAGCTTATAATAAGAAA+AGG 0.461564 4.4:-14901222 MS.gene08977:CDS
TTACCTGAAGCCTCCTTTGG+TGG 0.465202 4.4:+14900599 None:intergenic
GCTCCACCAAAGGAGGCTTC+AGG 0.466668 4.4:-14900602 MS.gene08977:CDS
GCCGCCGGAGGAAGCGGAGG+AGG 0.467841 4.4:-14903485 MS.gene08977:CDS
AAAAGCAGATCCTGAGCGTT+GGG 0.472666 4.4:-14901590 MS.gene08977:CDS
CCCAAGACAGCATGCTCAAA+GGG 0.473933 4.4:+14900385 None:intergenic
TCCTCATCAGCCGCTGCCGC+CGG 0.477669 4.4:-14903500 MS.gene08977:CDS
TTCCCGCAAAATCGAATCCA+TGG 0.478636 4.4:-14901248 MS.gene08977:CDS
TCACAGTCATAGTCATCCTC+CGG 0.482739 4.4:-14901497 MS.gene08977:CDS
CCAAATAGTGAGCAAGAAGA+AGG 0.485282 4.4:-14900458 MS.gene08977:CDS
GGATGACTATGACTGTGAAT+AGG 0.487235 4.4:+14901502 None:intergenic
GTCGCCCCAAATAAACTGTC+AGG 0.490553 4.4:-14900726 MS.gene08977:CDS
AATTCCAGTCTGAAATTGCT+AGG 0.494876 4.4:+14901142 None:intergenic
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 4.4:-14901464 MS.gene08977:CDS
TGTTGTGCTTGAAATAGGTT+GGG 0.496826 4.4:+14903333 None:intergenic
ACAGTTTATTTGGGGCGACC+TGG 0.496979 4.4:+14900730 None:intergenic
TGAGACAGAAAAGCTTCAGC+TGG 0.500611 4.4:-14901371 MS.gene08977:CDS
CTGCCAACTAAATTTAACTC+TGG 0.500806 4.4:-14900792 MS.gene08977:CDS
TGGCCGAGTATGAATTCCTA+TGG 0.502346 4.4:+14900750 None:intergenic
AAACCGAAATGTGGCTAATG+AGG 0.502956 4.4:-14900636 MS.gene08977:CDS
ATTGAGCTGACGGATGAAGC+TGG 0.506271 4.4:+14903304 None:intergenic
GTCAAAGCTGCTGCTCGGCA+CGG 0.509514 4.4:-14900569 MS.gene08977:CDS
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 4.4:-14901302 MS.gene08977:CDS
GCCTGTTGCCGAAGGTAGCT+TGG 0.510527 4.4:-14901173 MS.gene08977:CDS
TCCGGCGGCAGCGGCTGATG+AGG 0.511352 4.4:+14903499 None:intergenic
TTGTTGTGCTTGAAATAGGT+TGG 0.514168 4.4:+14903332 None:intergenic
CTGCAAGGTCTAGTGTTTCA+GGG 0.517628 4.4:+14900936 None:intergenic
TCTTCATTGTCTGAACAGCC+TGG 0.518791 4.4:+14900506 None:intergenic
TTGGCAAACTCCCAACGCTC+AGG 0.519786 4.4:+14901580 None:intergenic
CTTGTACATTGGAATTCCAT+AGG 0.525304 4.4:-14900766 MS.gene08977:CDS
AACAGCCTGGTCTTTCAGTA+AGG 0.527046 4.4:+14900519 None:intergenic
AGTTTATTTGAGATATCTTG+AGG 0.532987 4.4:+14901106 None:intergenic
GCTTAAGAGCTTGGATTGAA+GGG 0.534276 4.4:+14901405 None:intergenic
ATAGGAATTCATACTCGGCC+AGG 0.535479 4.4:-14900748 MS.gene08977:CDS
ATTATAAGCTGCCAAATCCA+TGG 0.537709 4.4:+14901231 None:intergenic
GTTTATTTGAGATATCTTGA+GGG 0.542382 4.4:+14901107 None:intergenic
CTCCAGTAACATCAAGAACA+TGG 0.542746 4.4:-14900417 MS.gene08977:CDS
TCATACGTCTTCTGAAGAAA+CGG 0.543831 4.4:+14903455 None:intergenic
GAAAAGCAGATCCTGAGCGT+TGG 0.545857 4.4:-14901591 MS.gene08977:CDS
CTGTCTGAAGGAGAACTGAC+AGG 0.546477 4.4:-14900989 MS.gene08977:CDS
CAATCCTAGCAATTTCAGAC+TGG 0.548773 4.4:-14901146 MS.gene08977:CDS
TCAGCGGCGATTGGATGGCA+TGG 0.549084 4.4:-14901341 MS.gene08977:CDS
ATTGTCAACCAAGCTACCTT+CGG 0.550180 4.4:+14901165 None:intergenic
CAAAGCTGCTGCTCGGCACG+GGG 0.552279 4.4:-14900567 MS.gene08977:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 4.4:-14901496 MS.gene08977:CDS
CGGACCTCCTCCGCTTCCTC+CGG 0.560425 4.4:+14903481 None:intergenic
GAGTCAAGAGTTAACGCTGA+TGG 0.561131 4.4:-14900686 MS.gene08977:CDS
TTCTGCTGTAGATCCAGAAA+GGG 0.565003 4.4:-14901473 MS.gene08977:CDS
CTGGAGCCAAGTACTGAAGA+AGG 0.565718 4.4:-14900830 MS.gene08977:CDS
TTCTGAAGAATATACACCGC+AGG 0.566868 4.4:-14901528 MS.gene08977:CDS
GTTCTGCTGTAGATCCAGAA+AGG 0.569845 4.4:-14901474 MS.gene08977:CDS
GCTGCCGCCGGAGGAAGCGG+AGG 0.569858 4.4:-14903488 MS.gene08977:CDS
TCATCAGCCGCTGCCGCCGG+AGG 0.573945 4.4:-14903497 MS.gene08977:CDS
AAGTTCATATCTGAGACAGC+TGG 0.576214 4.4:+14901067 None:intergenic
ACCTCCTCCGCTTCCTCCGG+CGG 0.590329 4.4:+14903484 None:intergenic
GATTGGATGGCATGGAGAAG+AGG 0.590608 4.4:-14901333 MS.gene08977:CDS
CAATCTAGCTCCACCAAAGG+AGG 0.593167 4.4:-14900609 MS.gene08977:CDS
CACGTGCAGCCTGTTGCCGA+AGG 0.594030 4.4:-14901181 MS.gene08977:CDS
GCAGCGGCTGATGAGGATTG+TGG 0.595315 4.4:+14903506 None:intergenic
GTCTTCTGAAGAAACGGTGC+CGG 0.596431 4.4:+14903461 None:intergenic
TTACATAGGTATTGAGCTGA+CGG 0.598207 4.4:+14903294 None:intergenic
AGAATGAAGATTTGGGCACT+CGG 0.602552 4.4:+14900853 None:intergenic
TCCAAGTCAAAGCTGCTGCT+CGG 0.603523 4.4:-14900574 MS.gene08977:CDS
CAAATAGTGAGCAAGAAGAA+GGG 0.604496 4.4:-14900457 MS.gene08977:CDS
ATTTCCTGACAGTTTATTTG+GGG 0.606554 4.4:+14900722 None:intergenic
AATAGGTTGGGAGAAGAACA+CGG 0.613461 4.4:+14903345 None:intergenic
TCTGGATCTACAGCAGAACC+CGG 0.614712 4.4:+14901478 None:intergenic
AGAAACGATCTCATCTGTGG+TGG 0.614963 4.4:+14903418 None:intergenic
AGTTTCCACAAACCGAAATG+TGG 0.624523 4.4:-14900645 MS.gene08977:CDS
GTGTTTCAGGGGTAAAAGCA+AGG 0.625370 4.4:+14900948 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.633047 4.4:+14903415 None:intergenic
TTGATATCAGGTAGCACACA+GGG 0.633161 4.4:-14901046 MS.gene08977:CDS
ACAGGGTTCAAACGAAGATG+AGG 0.634687 4.4:-14901029 MS.gene08977:CDS
TGCAAGGTCTAGTGTTTCAG+GGG 0.637403 4.4:+14900937 None:intergenic
ATTCCATAGGAATTCATACT+CGG 0.641768 4.4:-14900753 MS.gene08977:CDS
GACTGTGAATAGGTTTCCTG+CGG 0.644543 4.4:+14901512 None:intergenic
AGAACACGGGAGAATTCAGG+AGG 0.649555 4.4:+14903359 None:intergenic
ATAGGTTGGGAGAAGAACAC+GGG 0.651753 4.4:+14903346 None:intergenic
AATTTCCTTACTGAAAGACC+AGG 0.654469 4.4:-14900524 MS.gene08977:CDS
AAGATGCCCCAGTATCTGCA+AGG 0.666464 4.4:+14900921 None:intergenic
AGGCTGTTCAGACAATGAAG+AGG 0.672815 4.4:-14900504 MS.gene08977:CDS
TATCAATCTAGCTCCACCAA+AGG 0.674289 4.4:-14900612 MS.gene08977:CDS
TCTTCAGAAGACGTATGACA+TGG 0.676071 4.4:-14903450 MS.gene08977:CDS
CTTGATATCAGGTAGCACAC+AGG 0.676389 4.4:-14901047 MS.gene08977:CDS
GGCTGCACGTGATCAACCTG+AGG 0.691898 4.4:+14901193 None:intergenic
TCAGAAGACGTATGACATGG+TGG 0.698200 4.4:-14903447 MS.gene08977:CDS
ACTAGACCTTGCAGATACTG+GGG 0.701020 4.4:-14900927 MS.gene08977:CDS
ATAGTGAGCAAGAAGAAGGG+CGG 0.709670 4.4:-14900454 MS.gene08977:CDS
GGATCTACAGCAGAACCCGG+AGG 0.744225 4.4:+14901481 None:intergenic
GAACACGGGAGAATTCAGGA+GGG 0.754078 4.4:+14903360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTCTTGTAAATATTTAA+TGG - chr4.4:14902190-14902209 MS.gene08977:intron 10.0%
!!! ATTTATGTTTTAATTTGTTA+TGG - chr4.4:14902272-14902291 MS.gene08977:intron 10.0%
!! ATAAATATGATATGATGATA+TGG - chr4.4:14901312-14901331 MS.gene08977:CDS 15.0%
!! ATATCATATTTATATAGTTC+AGG + chr4.4:14901305-14901324 None:intergenic 15.0%
!! ATTATGAACAAATTTAGATT+TGG - chr4.4:14900847-14900866 MS.gene08977:CDS 15.0%
!! TCAATAAAAATTTACAATAC+AGG + chr4.4:14902041-14902060 None:intergenic 15.0%
!!! ATCTTTTATAAATTCTTCAT+TGG + chr4.4:14902360-14902379 None:intergenic 15.0%
!! AATGGGAAAATTTAACATTT+AGG + chr4.4:14901888-14901907 None:intergenic 20.0%
!! AGGATTAAACAATAAAAATC+TGG + chr4.4:14901927-14901946 None:intergenic 20.0%
!! ATGGGAAAATTTAACATTTA+GGG + chr4.4:14901887-14901906 None:intergenic 20.0%
!! ATGTGAAAGATTTGAAAATA+AGG + chr4.4:14901839-14901858 None:intergenic 20.0%
!! GGATTAAACAATAAAAATCT+GGG + chr4.4:14901926-14901945 None:intergenic 20.0%
!!! AAGCTAACTTTTTTTTTTCA+TGG + chr4.4:14901787-14901806 None:intergenic 20.0%
!!! AATTTAGTCTTTGAAGTATA+TGG - chr4.4:14901388-14901407 MS.gene08977:CDS 20.0%
!!! AGATATTATATAGTCTTGTA+CGG - chr4.4:14900932-14900951 MS.gene08977:CDS 20.0%
!!! ATTTATATGTGCTTTTTATC+AGG - chr4.4:14902298-14902317 MS.gene08977:intron 20.0%
!!! TTATTTTCAAATCTTTCACA+TGG - chr4.4:14901838-14901857 MS.gene08977:intron 20.0%
!!! TTTATATGTGCTTTTTATCA+GGG - chr4.4:14902299-14902318 MS.gene08977:intron 20.0%
! AAAAATCTGCTTAGTAAGAT+AGG - chr4.4:14900823-14900842 MS.gene08977:CDS 25.0%
! AAATAGAAATCATGCACTTA+TGG - chr4.4:14902101-14902120 MS.gene08977:intron 25.0%
! AATTTCCTGACAGTTTATTT+GGG + chr4.4:14903200-14903219 None:intergenic 25.0%
! ATAACAAAAGCTTCATTGTT+TGG - chr4.4:14900533-14900552 MS.gene08977:CDS 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr4.4:14901261-14901280 None:intergenic 25.0%
! ATGGCAATGATTAAAAACTA+AGG - chr4.4:14902120-14902139 MS.gene08977:intron 25.0%
! ATGGGCAATTATTGAATTTA+AGG - chr4.4:14901698-14901717 MS.gene08977:intron 25.0%
! ATTACACACATAAAAACTTC+AGG + chr4.4:14902165-14902184 None:intergenic 25.0%
! TGGGCAATTATTGAATTTAA+GGG - chr4.4:14901699-14901718 MS.gene08977:intron 25.0%
! TTGATATCTAACTCTTAGAT+AGG - chr4.4:14902072-14902091 MS.gene08977:intron 25.0%
!! ACTACTTATCATGTTTCTAT+AGG - chr4.4:14901488-14901507 MS.gene08977:CDS 25.0%
!! AGTTTATTTGAGATATCTTG+AGG + chr4.4:14902815-14902834 None:intergenic 25.0%
!! CTACTTATCATGTTTCTATA+GGG - chr4.4:14901489-14901508 MS.gene08977:CDS 25.0%
!! GTTTATTTGAGATATCTTGA+GGG + chr4.4:14902814-14902833 None:intergenic 25.0%
!! TAGAGACTAAATTTGAGATA+GGG - chr4.4:14901512-14901531 MS.gene08977:CDS 25.0%
!!! ATTGACACATTTTTGTTTTC+CGG + chr4.4:14901371-14901390 None:intergenic 25.0%
AAAAAAAATTCTGCAGCATC+TGG - chr4.4:14901201-14901220 MS.gene08977:CDS 30.0%
AATTGGAGTTGCTAAATGTT+GGG - chr4.4:14900884-14900903 MS.gene08977:CDS 30.0%
ATGCCAGAGTTAAATTTAGT+TGG + chr4.4:14903132-14903151 None:intergenic 30.0%
ATTCAATAATTGCCCATGTA+TGG + chr4.4:14901695-14901714 None:intergenic 30.0%
ATTCCATAGGAATTCATACT+CGG - chr4.4:14903165-14903184 MS.gene08977:intron 30.0%
ATTTCCTGACAGTTTATTTG+GGG + chr4.4:14903199-14903218 None:intergenic 30.0%
CAAATAAACTGTCAGGAAAT+TGG - chr4.4:14903199-14903218 MS.gene08977:intron 30.0%
CAATTTCCTGACAGTTTATT+TGG + chr4.4:14903201-14903220 None:intergenic 30.0%
GAAATTGTTGTGCTTGAAAT+AGG + chr4.4:14900593-14900612 None:intergenic 30.0%
GGTTATAGTATGCACTTAAT+GGG + chr4.4:14901905-14901924 None:intergenic 30.0%
TAATTCAGGGACTAAATTGA+TGG - chr4.4:14901538-14901557 MS.gene08977:CDS 30.0%
TAATTGGAGTTGCTAAATGT+TGG - chr4.4:14900883-14900902 MS.gene08977:CDS 30.0%
TCAGATATGAACTTGATATC+AGG - chr4.4:14902860-14902879 MS.gene08977:intron 30.0%
TCATCATATCACACTATTTC+TGG + chr4.4:14901345-14901364 None:intergenic 30.0%
TCTGAATATCACACTATTTC+TGG - chr4.4:14901272-14901291 MS.gene08977:CDS 30.0%
TGGATTTCATTGAGTCTAAT+TGG - chr4.4:14900867-14900886 MS.gene08977:CDS 30.0%
TGGCAGCTTATAATAAGAAA+AGG - chr4.4:14902696-14902715 MS.gene08977:intron 30.0%
TTGATTGATATGATGATACC+CGG - chr4.4:14901995-14902014 MS.gene08977:intron 30.0%
! CTATCTCTTTTACCAAAACA+AGG + chr4.4:14901604-14901623 None:intergenic 30.0%
! GATGGTAAAGAATCTGAAAT+TGG - chr4.4:14903250-14903269 MS.gene08977:intron 30.0%
! GTAGAGACTAAATTTGAGAT+AGG - chr4.4:14901511-14901530 MS.gene08977:CDS 30.0%
! TAGCATGAATTGACTTACAT+AGG + chr4.4:14900641-14900660 None:intergenic 30.0%
!! GGCATCTTTTACTTTTAACA+TGG - chr4.4:14903012-14903031 MS.gene08977:intron 30.0%
!!! TGTTTGCCATTTTTGTTTTC+CGG + chr4.4:14902017-14902036 None:intergenic 30.0%
!!! TTGACACATTTTTGTTTTCC+GGG + chr4.4:14901370-14901389 None:intergenic 30.0%
!!! TTGATGGTTTTATTCATGAC+TGG + chr4.4:14901245-14901264 None:intergenic 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr4.4:14902153-14902172 None:intergenic 35.0%
AAAGAAGTTTGCAGGTCTTA+TGG - chr4.4:14902223-14902242 MS.gene08977:intron 35.0%
AAATTAAGACCTACGAAGCA+TGG + chr4.4:14901119-14901138 None:intergenic 35.0%
AATCGTTCAAAGAAGTTTGC+AGG - chr4.4:14902215-14902234 MS.gene08977:intron 35.0%
AATTTCCTTACTGAAAGACC+AGG - chr4.4:14903394-14903413 MS.gene08977:CDS 35.0%
ACACTGAATTATGTCACTGT+CGG + chr4.4:14901028-14901047 None:intergenic 35.0%
AGCAATTTCAGACTGGAATT+TGG - chr4.4:14902779-14902798 MS.gene08977:intron 35.0%
ATAACTGTAGCTTAAGAGCT+TGG + chr4.4:14902525-14902544 None:intergenic 35.0%
ATCCATCTTTCATCATTCTC+AGG + chr4.4:14900911-14900930 None:intergenic 35.0%
ATCCATGTTCTTGATGTTAC+TGG + chr4.4:14903506-14903525 None:intergenic 35.0%
ATTATAAGCTGCCAAATCCA+TGG + chr4.4:14902690-14902709 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr4.4:14902676-14902695 MS.gene08977:intron 35.0%
CAAATAGTGAGCAAGAAGAA+GGG - chr4.4:14903461-14903480 MS.gene08977:CDS 35.0%
CAGAGTTAAATTTAGTTGGC+AGG + chr4.4:14903128-14903147 None:intergenic 35.0%
CTGCCAACTAAATTTAACTC+TGG - chr4.4:14903126-14903145 MS.gene08977:intron 35.0%
CTTAGTCGAGTTTCAATTAG+TGG - chr4.4:14900761-14900780 MS.gene08977:CDS 35.0%
CTTGTACATTGGAATTCCAT+AGG - chr4.4:14903152-14903171 MS.gene08977:intron 35.0%
GCAATTTCAGACTGGAATTT+GGG - chr4.4:14902780-14902799 MS.gene08977:intron 35.0%
GGGTTATAGTATGCACTTAA+TGG + chr4.4:14901906-14901925 None:intergenic 35.0%
TAGTGTGATATGATGATACC+CGG - chr4.4:14901349-14901368 MS.gene08977:CDS 35.0%
TGAGATAGGGTGATAATTCA+GGG - chr4.4:14901525-14901544 MS.gene08977:CDS 35.0%
TGATACCCGGAAAACAAAAA+TGG - chr4.4:14901362-14901381 MS.gene08977:CDS 35.0%
TGTTGTGCTTGAAATAGGTT+GGG + chr4.4:14900588-14900607 None:intergenic 35.0%
TTGAGATAGGGTGATAATTC+AGG - chr4.4:14901524-14901543 MS.gene08977:CDS 35.0%
TTGTTGTGCTTGAAATAGGT+TGG + chr4.4:14900589-14900608 None:intergenic 35.0%
! AATCCATGGATTCGATTTTG+CGG + chr4.4:14902676-14902695 None:intergenic 35.0%
! AATTCCAGTCTGAAATTGCT+AGG + chr4.4:14902779-14902798 None:intergenic 35.0%
! ATTTGGAATTGCTCGATAGT+TGG + chr4.4:14903446-14903465 None:intergenic 35.0%
! GCTTCGTAGGTCTTAATTTT+CGG - chr4.4:14901120-14901139 MS.gene08977:CDS 35.0%
! GTGACTTGTGACTAAATTGA+CGG - chr4.4:14901447-14901466 MS.gene08977:CDS 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + chr4.4:14900466-14900485 None:intergenic 35.0%
! TGACTTGTGACTAAATTGAC+GGG - chr4.4:14901448-14901467 MS.gene08977:CDS 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - chr4.4:14902616-14902635 MS.gene08977:intron 35.0%
!! TAGGTCTTAATTTTCGGTGT+GGG - chr4.4:14901126-14901145 MS.gene08977:CDS 35.0%
!! TTACATAGGTATTGAGCTGA+CGG + chr4.4:14900627-14900646 None:intergenic 35.0%
!!! GTTTGCCATTTTTGTTTTCC+GGG + chr4.4:14902016-14902035 None:intergenic 35.0%
AAACCGAAATGTGGCTAATG+AGG - chr4.4:14903282-14903301 MS.gene08977:intron 40.0%
AACTCTGGCATCTTGTACAT+TGG - chr4.4:14903141-14903160 MS.gene08977:intron 40.0%
AATTATGTCACTGTCGGTGT+CGG + chr4.4:14901022-14901041 None:intergenic 40.0%
AGAATGAAGATTTGGGCACT+CGG + chr4.4:14903068-14903087 None:intergenic 40.0%
AGCTTAAGAGCTTGGATTGA+AGG + chr4.4:14902517-14902536 None:intergenic 40.0%
AGTTTCCACAAACCGAAATG+TGG - chr4.4:14903273-14903292 MS.gene08977:intron 40.0%
ATGTCTACGATGCAGAAGAA+AGG + chr4.4:14901951-14901970 None:intergenic 40.0%
ATTGTCAACCAAGCTACCTT+CGG + chr4.4:14902756-14902775 None:intergenic 40.0%
CAAAACAAGGACGAGTTGTA+TGG + chr4.4:14901591-14901610 None:intergenic 40.0%
CAATCCTAGCAATTTCAGAC+TGG - chr4.4:14902772-14902791 MS.gene08977:intron 40.0%
CCAAATAGTGAGCAAGAAGA+AGG - chr4.4:14903460-14903479 MS.gene08977:CDS 40.0%
CCTTCTTCTTGCTCACTATT+TGG + chr4.4:14903463-14903482 None:intergenic 40.0%
CTATCACCTTCTTCAGTACT+TGG + chr4.4:14903097-14903116 None:intergenic 40.0%
CTCCAGTAACATCAAGAACA+TGG - chr4.4:14903501-14903520 MS.gene08977:CDS 40.0%
CTGCAGAAAAATCTGTCTGA+AGG - chr4.4:14902917-14902936 MS.gene08977:intron 40.0%
CTGTCAGGAAATTGGCAATT+TGG - chr4.4:14903207-14903226 MS.gene08977:intron 40.0%
CTTTCACATGGCTAACCTAT+GGG - chr4.4:14901850-14901869 MS.gene08977:intron 40.0%
GACCTGAGAATGATGAAAGA+TGG - chr4.4:14900906-14900925 MS.gene08977:CDS 40.0%
GCTCCAGAGAATGAAGATTT+GGG + chr4.4:14903075-14903094 None:intergenic 40.0%
GCTTAAGAGCTTGGATTGAA+GGG + chr4.4:14902516-14902535 None:intergenic 40.0%
GGATGACTATGACTGTGAAT+AGG + chr4.4:14902419-14902438 None:intergenic 40.0%
TAGCCTCATTAGCCACATTT+CGG + chr4.4:14903288-14903307 None:intergenic 40.0%
TCTTCAGAAGACGTATGACA+TGG - chr4.4:14900468-14900487 MS.gene08977:CDS 40.0%
TCTTTCACATGGCTAACCTA+TGG - chr4.4:14901849-14901868 MS.gene08977:intron 40.0%
TTCTGCTGTAGATCCAGAAA+GGG - chr4.4:14902445-14902464 MS.gene08977:intron 40.0%
TTGATATCAGGTAGCACACA+GGG - chr4.4:14902872-14902891 MS.gene08977:intron 40.0%
! AAGTTCATATCTGAGACAGC+TGG + chr4.4:14902854-14902873 None:intergenic 40.0%
! AATAGGTTGGGAGAAGAACA+CGG + chr4.4:14900576-14900595 None:intergenic 40.0%
! ATCCATGGATTCGATTTTGC+GGG + chr4.4:14902675-14902694 None:intergenic 40.0%
! ATGACTGACACGGGAAATTT+TGG + chr4.4:14901731-14901750 None:intergenic 40.0%
! ATTAGCCACATTTCGGTTTG+TGG + chr4.4:14903281-14903300 None:intergenic 40.0%
! CATACGTGTCATTGTTGTGT+CGG - chr4.4:14901051-14901070 MS.gene08977:CDS 40.0%
! CTTCAGACAGATTTTTCTGC+AGG + chr4.4:14902919-14902938 None:intergenic 40.0%
! GTAGGTCTTAATTTTCGGTG+TGG - chr4.4:14901125-14901144 MS.gene08977:CDS 40.0%
! GTTCGCGAATGTGTCATTAA+CGG - chr4.4:14901641-14901660 MS.gene08977:intron 40.0%
! TAAGGTGTTTGTGTTGTGTC+CGG + chr4.4:14900990-14901009 None:intergenic 40.0%
! TATCAATCTAGCTCCACCAA+AGG - chr4.4:14903306-14903325 MS.gene08977:CDS 40.0%
! TGACTGACACGGGAAATTTT+GGG + chr4.4:14901730-14901749 None:intergenic 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr4.4:14901151-14901170 MS.gene08977:CDS 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - chr4.4:14902561-14902580 MS.gene08977:intron 40.0%
! TTCTGAAGAATATACACCGC+AGG - chr4.4:14902390-14902409 MS.gene08977:intron 40.0%
!! CATACAACTCGTCCTTGTTT+TGG - chr4.4:14901589-14901608 MS.gene08977:CDS 40.0%
AAAAGCAGATCCTGAGCGTT+GGG - chr4.4:14902328-14902347 MS.gene08977:intron 45.0%
AACCTGCGTCTAACCATACA+TGG - chr4.4:14901679-14901698 MS.gene08977:intron 45.0%
ACACTAGACCTTGCAGATAC+TGG - chr4.4:14902989-14903008 MS.gene08977:intron 45.0%
ACAGGAATGCAGACAAGAAC+TGG - chr4.4:14902947-14902966 MS.gene08977:intron 45.0%
ACAGGGTTCAAACGAAGATG+AGG - chr4.4:14902889-14902908 MS.gene08977:intron 45.0%
ACCTGCGTCTAACCATACAT+GGG - chr4.4:14901680-14901699 MS.gene08977:intron 45.0%
ACTAGACCTTGCAGATACTG+GGG - chr4.4:14902991-14903010 MS.gene08977:intron 45.0%
ACTTCAGGAAGCAAATCTGG+CGG + chr4.4:14902150-14902169 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr4.4:14900503-14900522 None:intergenic 45.0%
AGAAGAACACGGGAGAATTC+AGG + chr4.4:14900565-14900584 None:intergenic 45.0%
AGACACATCATGACTGACAC+GGG + chr4.4:14901740-14901759 None:intergenic 45.0%
AGGCTGTTCAGACAATGAAG+AGG - chr4.4:14903414-14903433 MS.gene08977:CDS 45.0%
ATAGGAATTCATACTCGGCC+AGG - chr4.4:14903170-14903189 MS.gene08977:intron 45.0%
ATAGTGAGCAAGAAGAAGGG+CGG - chr4.4:14903464-14903483 MS.gene08977:CDS 45.0%
ATTCTGCAGCATCTGGATCT+TGG - chr4.4:14901208-14901227 MS.gene08977:CDS 45.0%
CACTAGACCTTGCAGATACT+GGG - chr4.4:14902990-14903009 MS.gene08977:intron 45.0%
CAGACACATCATGACTGACA+CGG + chr4.4:14901741-14901760 None:intergenic 45.0%
CAGCATCTGGATCTTGGTAA+TGG - chr4.4:14901214-14901233 MS.gene08977:CDS 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr4.4:14900506-14900525 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr4.4:14900503-14900522 MS.gene08977:CDS 45.0%
CGAAGCACAAACATAGACAC+CGG - chr4.4:14900968-14900987 MS.gene08977:CDS 45.0%
CGTAGACATCTCAAGCATCT+AGG - chr4.4:14901962-14901981 MS.gene08977:intron 45.0%
CTACGATGCAGAAGAAAGGT+AGG + chr4.4:14901947-14901966 None:intergenic 45.0%
CTGCAAGGTCTAGTGTTTCA+GGG + chr4.4:14902985-14903004 None:intergenic 45.0%
CTTGATATCAGGTAGCACAC+AGG - chr4.4:14902871-14902890 MS.gene08977:intron 45.0%
GACTGTGAATAGGTTTCCTG+CGG + chr4.4:14902409-14902428 None:intergenic 45.0%
GAGTCAAGAGTTAACGCTGA+TGG - chr4.4:14903232-14903251 MS.gene08977:intron 45.0%
GGCTCCAGAGAATGAAGATT+TGG + chr4.4:14903076-14903095 None:intergenic 45.0%
GTGCCCAAATCTTCATTCTC+TGG - chr4.4:14903069-14903088 MS.gene08977:intron 45.0%
GTGTTTCAGGGGTAAAAGCA+AGG + chr4.4:14902973-14902992 None:intergenic 45.0%
GTTCTGCTGTAGATCCAGAA+AGG - chr4.4:14902444-14902463 MS.gene08977:intron 45.0%
TAAGAAAAGGCGATTGCCTC+AGG - chr4.4:14902709-14902728 MS.gene08977:intron 45.0%
TACGAAGCATGGACAATCCT+CGG + chr4.4:14901108-14901127 None:intergenic 45.0%
TCACAGTCATAGTCATCCTC+CGG - chr4.4:14902421-14902440 MS.gene08977:intron 45.0%
TCAGAAGACGTATGACATGG+TGG - chr4.4:14900471-14900490 MS.gene08977:CDS 45.0%
TCTGCAAGGTCTAGTGTTTC+AGG + chr4.4:14902986-14903005 None:intergenic 45.0%
TCTTCATTGTCTGAACAGCC+TGG + chr4.4:14903415-14903434 None:intergenic 45.0%
TGAGACAGAAAAGCTTCAGC+TGG - chr4.4:14902547-14902566 MS.gene08977:intron 45.0%
TGCAAGGTCTAGTGTTTCAG+GGG + chr4.4:14902984-14903003 None:intergenic 45.0%
TGGCCGAGTATGAATTCCTA+TGG + chr4.4:14903171-14903190 None:intergenic 45.0%
TTCCCGCAAAATCGAATCCA+TGG - chr4.4:14902670-14902689 MS.gene08977:intron 45.0%
! AACAGCCTGGTCTTTCAGTA+AGG + chr4.4:14903402-14903421 None:intergenic 45.0%
! ACGGGGTGAATGATGTGTTT+TGG - chr4.4:14903368-14903387 MS.gene08977:CDS 45.0%
! ATAGGTTGGGAGAAGAACAC+GGG + chr4.4:14900575-14900594 None:intergenic 45.0%
! CGGGGTGAATGATGTGTTTT+GGG - chr4.4:14903369-14903388 MS.gene08977:CDS 45.0%
! CTTCTTTGAGAAGGCTCTTC+AGG - chr4.4:14902625-14902644 MS.gene08977:intron 45.0%
AAGATGCCCCAGTATCTGCA+AGG + chr4.4:14903000-14903019 None:intergenic 50.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr4.4:14903325-14903344 None:intergenic 50.0%
AGAACACGGGAGAATTCAGG+AGG + chr4.4:14900562-14900581 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr4.4:14902454-14902473 MS.gene08977:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr4.4:14902422-14902441 MS.gene08977:intron 50.0%
CTGTCTGAAGGAGAACTGAC+AGG - chr4.4:14902929-14902948 MS.gene08977:intron 50.0%
GAAAAGCAGATCCTGAGCGT+TGG - chr4.4:14902327-14902346 MS.gene08977:intron 50.0%
GAACACGGGAGAATTCAGGA+GGG + chr4.4:14900561-14900580 None:intergenic 50.0%
GAGGATTGTCCATGCTTCGT+AGG - chr4.4:14901107-14901126 MS.gene08977:CDS 50.0%
GATTAGGTGTGTCCTGACGT+CGG + chr4.4:14901086-14901105 None:intergenic 50.0%
GATTGGATGGCATGGAGAAG+AGG - chr4.4:14902585-14902604 MS.gene08977:intron 50.0%
GCATGGACAATCCTCGGATT+AGG + chr4.4:14901102-14901121 None:intergenic 50.0%
GTCGCCCCAAATAAACTGTC+AGG - chr4.4:14903192-14903211 MS.gene08977:intron 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr4.4:14901142-14901161 MS.gene08977:CDS 50.0%
TCCAAGTCAAAGCTGCTGCT+CGG - chr4.4:14903344-14903363 MS.gene08977:CDS 50.0%
TCTGGATCTACAGCAGAACC+CGG + chr4.4:14902443-14902462 None:intergenic 50.0%
TTACCTGAAGCCTCCTTTGG+TGG + chr4.4:14903322-14903341 None:intergenic 50.0%
! ACAGTTTATTTGGGGCGACC+TGG + chr4.4:14903191-14903210 None:intergenic 50.0%
! ATTGAGCTGACGGATGAAGC+TGG + chr4.4:14900617-14900636 None:intergenic 50.0%
! CAATCTAGCTCCACCAAAGG+AGG - chr4.4:14903309-14903328 MS.gene08977:CDS 50.0%
! GATTTTCAGCGGCGATTGGA+TGG - chr4.4:14902572-14902591 MS.gene08977:intron 50.0%
! GGAAGATTTTCAGCGGCGAT+TGG - chr4.4:14902568-14902587 MS.gene08977:intron 50.0%
! GGCTAACCTATGGGTGCTTT+TGG - chr4.4:14901859-14901878 MS.gene08977:intron 50.0%
! GGTTAGACGCAGGTTCTAAC+TGG + chr4.4:14901674-14901693 None:intergenic 50.0%
! GTCTTCTGAAGAAACGGTGC+CGG + chr4.4:14900460-14900479 None:intergenic 50.0%
! TTCGGTGTGGGTGTGTGAAT+TGG - chr4.4:14901138-14901157 MS.gene08977:CDS 50.0%
!! AGGGTTCCAAAAGCACCCAT+AGG + chr4.4:14901868-14901887 None:intergenic 50.0%
!! CTGGAGCCAAGTACTGAAGA+AGG - chr4.4:14903088-14903107 MS.gene08977:intron 50.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr4.4:14902749-14902768 None:intergenic 55.0%
CAGGAAGCAAATCTGGCGGT+GGG + chr4.4:14902146-14902165 None:intergenic 55.0%
GAAGAAGGGCGGTCAGTTCA+TGG - chr4.4:14903475-14903494 MS.gene08977:CDS 55.0%
GCCCATGTATGGTTAGACGC+AGG + chr4.4:14901684-14901703 None:intergenic 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr4.4:14901141-14901160 MS.gene08977:CDS 55.0%
GTCAGGACACACCTAATCCG+AGG - chr4.4:14901088-14901107 MS.gene08977:CDS 55.0%
TCAGGAAGCAAATCTGGCGG+TGG + chr4.4:14902147-14902166 None:intergenic 55.0%
TGCTCCAATGCTGCCCTTTC+TGG + chr4.4:14902461-14902480 None:intergenic 55.0%
TTGGCAAACTCCCAACGCTC+AGG + chr4.4:14902341-14902360 None:intergenic 55.0%
GCAGCGGCTGATGAGGATTG+TGG + chr4.4:14900415-14900434 None:intergenic 60.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr4.4:14902745-14902764 MS.gene08977:intron 60.0%
GCTCCACCAAAGGAGGCTTC+AGG - chr4.4:14903316-14903335 MS.gene08977:CDS 60.0%
GGATCTACAGCAGAACCCGG+AGG + chr4.4:14902440-14902459 None:intergenic 60.0%
GGCTGCACGTGATCAACCTG+AGG + chr4.4:14902728-14902747 None:intergenic 60.0%
GTCAAAGCTGCTGCTCGGCA+CGG - chr4.4:14903349-14903368 MS.gene08977:CDS 60.0%
TCAAAGCTGCTGCTCGGCAC+GGG - chr4.4:14903350-14903369 MS.gene08977:CDS 60.0%
TCAGCGGCGATTGGATGGCA+TGG - chr4.4:14902577-14902596 MS.gene08977:intron 60.0%
! GCCGAGCAGCAGCTTTGACT+TGG + chr4.4:14903348-14903367 None:intergenic 60.0%
!! GTCACTGTCGGTGTCGGTGT+CGG + chr4.4:14901016-14901035 None:intergenic 60.0%
CAAAGCTGCTGCTCGGCACG+GGG - chr4.4:14903351-14903370 MS.gene08977:CDS 65.0%
CACGTGCAGCCTGTTGCCGA+AGG - chr4.4:14902737-14902756 MS.gene08977:intron 65.0%
! CGGTGTCAGACACCGACGTC+AGG - chr4.4:14901071-14901090 MS.gene08977:CDS 65.0%
!! CGGTGTCGGTGTCGGCGATA+AGG + chr4.4:14901008-14901027 None:intergenic 65.0%
ACCTCCTCCGCTTCCTCCGG+CGG + chr4.4:14900437-14900456 None:intergenic 70.0%
CGGACCTCCTCCGCTTCCTC+CGG + chr4.4:14900440-14900459 None:intergenic 70.0%
CGGAGGAAGCGGAGGAGGTC+CGG - chr4.4:14900438-14900457 MS.gene08977:CDS 70.0%
TCCTCATCAGCCGCTGCCGC+CGG - chr4.4:14900418-14900437 MS.gene08977:CDS 70.0%
TCATCAGCCGCTGCCGCCGG+AGG - chr4.4:14900421-14900440 MS.gene08977:CDS 75.0%
TCCGCTTCCTCCGGCGGCAG+CGG + chr4.4:14900431-14900450 None:intergenic 75.0%
TCCGGCGGCAGCGGCTGATG+AGG + chr4.4:14900422-14900441 None:intergenic 75.0%
! GCCGCCGGAGGAAGCGGAGG+AGG - chr4.4:14900433-14900452 MS.gene08977:CDS 80.0%
! GCCGCTGCCGCCGGAGGAAG+CGG - chr4.4:14900427-14900446 MS.gene08977:CDS 80.0%
! GCTGCCGCCGGAGGAAGCGG+AGG - chr4.4:14900430-14900449 MS.gene08977:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 14900400 14903540 14900400 ID=MS.gene08977
chr4.4 mRNA 14900400 14903540 14900400 ID=MS.gene08977.t1;Parent=MS.gene08977
chr4.4 exon 14903298 14903540 14903298 ID=MS.gene08977.t1.exon1;Parent=MS.gene08977.t1
chr4.4 CDS 14903298 14903540 14903298 ID=cds.MS.gene08977.t1;Parent=MS.gene08977.t1
chr4.4 exon 14900400 14901620 14900400 ID=MS.gene08977.t1.exon2;Parent=MS.gene08977.t1
chr4.4 CDS 14900400 14901620 14900400 ID=cds.MS.gene08977.t1;Parent=MS.gene08977.t1
Gene Sequence

>MS.gene08977

ATGAATTCTGCACCACAATCCTCATCAGCCGCTGCCGCCGGAGGAAGCGGAGGAGGTCCGGCACCGTTTCTTCAGAAGACGTATGACATGGTGGATGATTCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATTGTTTGGAACCCTCCTGAATTCTCCCGTGTTCTTCTCCCAACCTATTTCAAGCACAACAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGTAAGTCAATTCATGCTATACGCTTCTTTTGATTGTTTCATTGTTATTTTGTATGATCAATTAGTTATTGTTTTTGTTTGATTGTTTGTTGTATTTGTATGATTTGATTTCATTGTGTCTTAGTCGAGTTTCAATTAGTGGATATTGATTGTTATGATACGATCATTAAGAGATTGATGAAAAAATCTGCTTAGTAAGATAGGAATTATGAACAAATTTAGATTTGGATTTCATTGAGTCTAATTGGAGTTGCTAAATGTTGGGACCTGAGAATGATGAAAGATGGATGAGATATTATATAGTCTTGTACGGCACTTTTATGCTACGAAGCACAAACATAGACACCGGACACAACACAAACACCTTATCGCCGACACCGACACCGACAGTGACATAATTCAGTGTTATCATACGTGTCATTGTTGTGTCGGTGTCAGACACCGACGTCAGGACACACCTAATCCGAGGATTGTCCATGCTTCGTAGGTCTTAATTTTCGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAACAATCAAAAAAAATTCTGCAGCATCTGGATCTTGGTAATGGTACATCCAGTCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCTGGTTTATTTCCTGAACTATATAAATATGATATGATGATATGGAAATAAACCAGAAATAGTGTGATATGATGATACCCGGAAAACAAAAATGTGTCAATTTAGTCTTTGAAGTATATGGAAATTCGTCAATTTTGTCTCTAACATCTTAATTGTTGTGACTTGTGACTAAATTGACGGGTTTCATATGCTTTAGAGACTACTTATCATGTTTCTATAGGGTAGAGACTAAATTTGAGATAGGGTGATAATTCAGGGACTAAATTGATGGTTTACAATCAGTGATCAAATAATTGCGCCATACAACTCGTCCTTGTTTTGGTAAAAGAGATAGAGCACTACAAAAAAGAAGTTCGCGAATGTGTCATTAACGGAAAATGACCAGTTAGAACCTGCGTCTAACCATACATGGGCAATTATTGAATTTAAGGGATTTACCCAAAATTTCCCGTGTCAGTCATGATGTGTCTGCGATGTTATTTCTTGTGACATTTCCATGAAAAAAAAAAGTTAGCTTGTTTTTCTTTTATAATTATACAAATATTACCTTATTTTCAAATCTTTCACATGGCTAACCTATGGGTGCTTTTGGAACCCTAAATGTTAAATTTTCCCATTAAGTGCATACTATAACCCAGATTTTTATTGTTTAATCCTACCTTTCTTCTGCATCGTAGACATCTCAAGCATCTAGGTTTTCATTTATTGATTGATATGATGATACCCGGAAAACAAAAATGGCAAACATCCTGTATTGTAAATTTTTATTGAACTTGTTGAAATTGATATCTAACTCTTAGATAGGATTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGGCCCACCGCCAGATTTGCTTCCTGAAGTTTTTATGTGTGTAATGAAGAATATTCTTGTAAATATTTAATGGTAAATCGTTCAAAGAAGTTTGCAGGTCTTATGGCTTTAATGATAAACAATTGTTTATGAATTTATGTTTTAATTTGTTATGGTTTATTTATATGTGCTTTTTATCAGGGATTTCGAAAAGCAGATCCTGAGCGTTGGGAGTTTGCCAATGAAGAATTTATAAAAGATCAAAAACATCTTCTGAAGAATATACACCGCAGGAAACCTATTCACAGTCATAGTCATCCTCCGGGTTCTGCTGTAGATCCAGAAAGGGCAGCATTGGAGCAAGAAATAGAGAAGCTGTCTCGCGAGAAAAATGCCCTTCAATCCAAGCTCTTAAGCTACAGTTATCTTGAGACAGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAGGATTCTTTTATTGTTGAACTTCTTTCCCGCAAAATCGAATCCATGGATTTGGCAGCTTATAATAAGAAAAGGCGATTGCCTCAGGTTGATCACGTGCAGCCTGTTGCCGAAGGTAGCTTGGTTGACAATCCTAGCAATTTCAGACTGGAATTTGGGAATGTATTCCCTCAAGATATCTCAAATAAACTCAGACTAGAATTGTCACCAGCTGTCTCAGATATGAACTTGATATCAGGTAGCACACAGGGTTCAAACGAAGATGAGGAAAGCCTGCAGAAAAATCTGTCTGAAGGAGAACTGACAGGAATGCAGACAAGAACTGGCCTTGCTTTTACCCCTGAAACACTAGACCTTGCAGATACTGGGGCATCTTTTACTTTTAACATGGATTCGTGTTTATCACAAAGAGCAACTACTACCGAGTGCCCAAATCTTCATTCTCTGGAGCCAAGTACTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTGGCATCTTGTACATTGGAATTCCATAGGAATTCATACTCGGCCAGGTCGCCCCAAATAAACTGTCAGGAAATTGGCAATTTGGCAGAGTCAAGAGTTAACGCTGATGGTAAAGAATCTGAAATTGGAGTTTCCACAAACCGAAATGTGGCTAATGAGGCTATCAATCTAGCTCCACCAAAGGAGGCTTCAGGTAACGTCCAAGTCAAAGCTGCTGCTCGGCACGGGGTGAATGATGTGTTTTGGGAAAATTTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTATCGAGCAATTCCAAATAGTGAGCAAGAAGAAGGGCGGTCAGTTCATGGAATCTCCAGTAACATCAAGAACATGGATAATCTCACCCTTTGA
Protein sequence

>MS.gene08977.t1

MNSAPQSSSAAAAGGSGGGPAPFLQKTYDMVDDSTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKADPERWEFANEEFIKDQKHLLKNIHRRKPIHSHSHPPGSAVDPERAALEQEIEKLSREKNALQSKLLSYSYLETEKLQLEDFQRRLDGMEKRQTNLQNFFEKALQDSFIVELLSRKIESMDLAAYNKKRRLPQVDHVQPVAEGSLVDNPSNFRLEFGNVFPQDISNKLRLELSPAVSDMNLISGSTQGSNEDEESLQKNLSEGELTGMQTRTGLAFTPETLDLADTGASFTFNMDSCLSQRATTTECPNLHSLEPSTEEGDSHISCQLNLTLASCTLEFHRNSYSARSPQINCQEIGNLAESRVNADGKESEIGVSTNRNVANEAINLAPPKEASGNVQVKAAARHGVNDVFWENFLTERPGCSDNEEAISNYRAIPNSEQEEGRSVHGISSNIKNMDNLTL