AlfalfaGEDB | MS.gene09016

M. sativa cultivar XinJiangDaYe / MS.gene09016

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21 PF01486.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09016.t1	XP_003630490.2	100	242	0	0	1	242	1	242	3.10E-129	471.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09016.t1	Q8LLR0	85.5	242	35	0	1	242	1	242	1.9e-111	403.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09016.t1	G7LHA3	100.0	242	0	0	1	242	1	242	2.3e-129	471.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene09016.t1	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09016.t1	MTR_8g097090	100.000	242	0	0	1	242	1	242	4.04e-180	494
MS.gene09016.t1	MTR_3g084980	84.898	245	33	4	1	242	1	244	2.66e-151	421
MS.gene09016.t1	MTR_6g015975	66.142	254	68	7	1	241	1	249	9.48e-107	308
MS.gene09016.t1	MTR_7g016600	64.542	251	76	5	1	241	1	248	8.34e-102	296
MS.gene09016.t1	MTR_4g109810	57.399	223	90	2	1	221	1	220	5.55e-81	243
MS.gene09016.t1	MTR_8g033270	50.000	252	113	5	1	241	1	250	3.41e-75	228
MS.gene09016.t1	MTR_7g075850	50.394	254	108	7	1	241	1	249	1.47e-74	227
MS.gene09016.t1	MTR_4g109830	60.947	169	65	1	1	169	1	168	3.98e-62	194
MS.gene09016.t1	MTR_8g066260	56.805	169	72	1	1	169	1	168	9.74e-59	186
MS.gene09016.t1	MTR_6g464720	54.438	169	77	0	1	169	1	169	7.45e-56	179

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09016.t1	AT1G24260	76.829	246	51	5	1	242	1	244	2.48e-124	353
MS.gene09016.t1	AT1G24260	76.518	247	51	5	1	242	1	245	2.86e-124	353
MS.gene09016.t1	AT1G24260	73.279	247	45	6	1	242	1	231	4.72e-114	327
MS.gene09016.t1	AT3G02310	63.492	252	78	6	1	241	1	249	5.61e-101	294
MS.gene09016.t1	AT5G15800	62.500	256	75	5	1	241	1	250	1.32e-99	290
MS.gene09016.t1	AT5G15800	68.750	224	61	3	1	218	1	221	1.02e-97	286
MS.gene09016.t1	AT3G02310	79.290	169	34	1	1	169	1	168	2.75e-90	265
MS.gene09016.t1	AT2G03710	51.538	260	103	8	1	241	1	256	4.18e-75	228
MS.gene09016.t1	AT2G03710	51.341	261	103	8	1	241	1	257	5.08e-75	228
MS.gene09016.t1	AT2G03710	66.474	173	55	2	1	172	1	171	2.17e-74	224

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Find 60 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTATGGGAGAAGATCT+TGG	0.476304	4.4:+15252311	MS.gene09016:CDS
AAGAGCTCGAGTCGCTTGAA+AGG	0.484895	4.4:+15252348	MS.gene09016:CDS
AAGCATTACAACGATCCCAG+CGG	0.752193	4.4:+15252201	MS.gene09016:CDS
AAGTTACCTTCGCTAAACGA+AGG	0.697050	4.4:+15248481	MS.gene09016:CDS
AATGCATGTGTTGAAGAAAT+GGG	0.539143	4.4:+15254056	MS.gene09016:CDS
ACAGCTGGTCCAGCATGAAT+TGG	0.364414	4.4:-15253725	None:intergenic
ACAGGAATATTTGAAGCTGA+AGG	0.614815	4.4:+15252169	MS.gene09016:CDS
ACCAAGCATGAGTAATTACA+TGG	0.537203	4.4:+15254883	MS.gene09016:CDS
ACCGTTCCTTCGTTTAGCGA+AGG	0.581124	4.4:-15248487	None:intergenic
ACCTTCGCTAAACGAAGGAA+CGG	0.658430	4.4:+15248486	MS.gene09016:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGCAAGAGATATTGTT+TGG	-	chr4.4:15253047-15253066	None:intergenic	30.0%
AAAGTTCTTCGAAAACAGAT+TGG	+	chr4.4:15253394-15253413	MS.gene09016:intron	30.0%
AAATTGTCCAAAACGTAACA+CGG	-	chr4.4:15251016-15251035	None:intergenic	30.0%
AAGTTCTTCGAAAACAGATT+GGG	+	chr4.4:15253395-15253414	MS.gene09016:intron	30.0%
AATATCTCCACAAAAACATG+TGG	+	chr4.4:15254656-15254675	MS.gene09016:intron	30.0%
AATGCATGTGTTGAAGAAAT+GGG	+	chr4.4:15254056-15254075	MS.gene09016:CDS	30.0%
ACAAATACCCTTGAATTTCA+TGG	+	chr4.4:15249346-15249365	MS.gene09016:intron	30.0%
AGATGTTATATGAGTGGTAT+GGG	+	chr4.4:15251621-15251640	MS.gene09016:intron	30.0%
AGTTTCTCAATTGTAAGCTA+GGG	+	chr4.4:15253288-15253307	MS.gene09016:intron	30.0%
ATACACGCACAAAAAAATAG+AGG	-	chr4.4:15252056-15252075	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	15248429	15254922	15248429	ID=MS.gene09016
chr4.4	mRNA	15248429	15254922	15248429	ID=MS.gene09016.t1;Parent=MS.gene09016
chr4.4	exon	15248429	15248613	15248429	ID=MS.gene09016.t1.exon1;Parent=MS.gene09016.t1
chr4.4	CDS	15248429	15248613	15248429	ID=cds.MS.gene09016.t1;Parent=MS.gene09016.t1
chr4.4	exon	15250789	15250867	15250789	ID=MS.gene09016.t1.exon2;Parent=MS.gene09016.t1
chr4.4	CDS	15250789	15250867	15250789	ID=cds.MS.gene09016.t1;Parent=MS.gene09016.t1
chr4.4	exon	15252155	15252222	15252155	ID=MS.gene09016.t1.exon3;Parent=MS.gene09016.t1
chr4.4	CDS	15252155	15252222	15252155	ID=cds.MS.gene09016.t1;Parent=MS.gene09016.t1
chr4.4	exon	15252310	15252409	15252310	ID=MS.gene09016.t1.exon4;Parent=MS.gene09016.t1
chr4.4	CDS	15252310	15252409	15252310	ID=cds.MS.gene09016.t1;Parent=MS.gene09016.t1
chr4.4	exon	15253723	15253764	15253723	ID=MS.gene09016.t1.exon5;Parent=MS.gene09016.t1
chr4.4	CDS	15253723	15253764	15253723	ID=cds.MS.gene09016.t1;Parent=MS.gene09016.t1
chr4.4	exon	15253858	15253899	15253858	ID=MS.gene09016.t1.exon6;Parent=MS.gene09016.t1
chr4.4	CDS	15253858	15253899	15253858	ID=cds.MS.gene09016.t1;Parent=MS.gene09016.t1
chr4.4	exon	15254020	15254156	15254020	ID=MS.gene09016.t1.exon7;Parent=MS.gene09016.t1
chr4.4	CDS	15254020	15254156	15254020	ID=cds.MS.gene09016.t1;Parent=MS.gene09016.t1
chr4.4	exon	15254847	15254922	15254847	ID=MS.gene09016.t1.exon8;Parent=MS.gene09016.t1
chr4.4	CDS	15254847	15254922	15254847	ID=cds.MS.gene09016.t1;Parent=MS.gene09016.t1

Gene Sequence

>MS.gene09016

ATGGGAAGAGGAAGAGTTGAGTTGAAGAGAATTGAAAACAAAATCAACAGACAAGTTACCTTCGCTAAACGAAGGAACGGTCTTTTGAAAAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAATAGAGGAAAACTCTATGAGTTTTGTAGCAGTTCAAGGTATCTTATCTTATGCTACAACAAAACCTAAAATCTCTCTTTCTTTTTATTTTTTCAAAGATCTTCACTCCTTTCGATTTTTGCTTTTTTCATATATGAGAAGAGAAATATTTAATATTATTATAAGTTTATTTGTGAAAACGTGAAAAAAAAATGAATAAAGTTGATTTTTAATTTTCACTGTTTGAGTTTTTTCCGTTTCTGTGAATGTCTCGGCGTTTATAGAAGTTTGAGTGTTTCTGCAATTGTATTCATGTTAGATCTGCAACTGGAAACTCAATAAACAAATAAATATATATTTTAAAAATATCACTGTTGTATTGTATTTAATCTATTTTATTTATTTATTTCTTCTGTTGCTTTCTCTTTCTTTTTTTCTTTCCCTCTTTTAGGTCTAAACTCAGCCTCTGAAATTACCATATTTTCGCTTCGCCAGCGTTTGAAACAGATCTGGTTCAAAAGCCTTTTCCAAAAGCAATTTTTGTGACTATAGTCAGGTCTCTTTTCAGTGTAAATTAAGTGTATAATCAATTTTTTCTTCCATTTTCAGTGTTAATAGCTAGTTTGCTTTTCTGGTTCATTGTTCAAAAATCACTTAAACAATGTAAACTAAAAGCTATACTTCTCTGAACCTAGGGTTTTTCTCCAACTTTAACTTTTTCAATTTTTGTATTATATATTATTAGTTTTTTAATATATAATAATATATATATTCCCCTTTTTTGGTGAAACACAAATACCCTTGAATTTCATGGGACTTTGTCTTGGATCCAAATTCCATTATCTTTTATGTCCAAAGAGCAATATGGTGTTGTCAATTTTCTTAATAATTTCTTGTACTATATTTTTTTTTCCTTCTTTCAATTCATTGTTTAATGATAGTGATTTTTTGTTAAATTAGAATTCAGAATAGTCTTTTCCATCACTCTTGGAGTGGATAATAACATGAATGACCTCTATCACCTCTTCTGTCAATAAATGTTTTTCAATCACTTCATTTCTTGTTTTCATATTTTCCTTTGGAAACAACTATGATTCTTTTTTTTAGATCTGGTTGTGCAAAAAAAAATCTGGTACATGTTTTTTCTCATGGATTAAAAAGTGACACTCCTCATAAATGGTCTAAATCTTACACATACACACAAACATCCCAATGGTTTTTGCTCTCTTTGGTGGTCTTAATAATGTTTCTTATTTAGCAGTCTCTCTTCATGATTCACCAGGTAAAATATGTGTTGATTATTAATGATTTGTGGGTAAATTATGTATATACACTGTGATGTTATTGTAAATATTTTGAGAGTCTGCTTATTTCTGTGGAATATGAAATGAAATCTTTTAACTGATGAATCTCTATATGATCAAGAGATTGAGGTTGATTTGATGTCATTTGAAGCCTTTTGATTATAGCCCTAAAACATTGCTGAAAATATCTTTTACATTTAATTTTTTTTATAAGGAATTTTTTAATTTTTGGTTTGCTAATTTCTGTCAAGCAAATATTTTATATTATTTAGTTTTGAGAGGAAATATTTCAGATTATTATATACTAAGAATATGGAATAAGCAGTAATACATTTTTGTCAAGGAAAATATACAATATTATTTTCCACCAATGCTCACTAGTATGTATGGTTGCACCTTGGGATGATTCAAAATTGATTTTAGAGTTGTAAATTTAATTCTATGATGTTTGGATGTACTCATTTTGTCTTTAGAAATTATTCTAATTTGAAGATAGAATTTGAATTTTTTTGCATCTACAAATAAATTTTACTCTCAAAGATAAGTAACATGAATCTATTTAAAGATAAAAAACATCACTTTCAAGTCTATGACCTGGATCACTAAAAAAAAAGTCCATGACTTGGAATCAATTTTTACTTCCTGAATCAAACACAAACACCTTAAGTTGTCCCAATTTGTTGCTTGCAAAATTTAGGTGCATTTCCTTGTTGATTGTTTTTTAAGCAATCTCCTTGATAATTTGTTATTGCCTCTTATTCTTTTTTTGTCCTTAATTAATTTGATGCTTTTTTGACATATTAATTTGGTGTTAGGCATAAGGAAAACTTAATTATGTTTTAAGAGAGGGTTTAATTTGTCCTCAATAATTTATATTTTATAATTTTTTGTATGTTATACAAGTTATTTATCTTTGTCAATGTGCTGCAGCATGCTGAAAACGCTAGAGAGGTACCAGAAATGCAACTATGGTGCGCCTGAGACTAATGTGTCTGCACGAGAAGCCTTGGTAACATATCTTTCATGGAAAATGTTTGATCTTATATAAAATCATTATGTTAATTGTCCTTTTATCTTGACTAAAAAAACTTGACTATTTTACAGTCAAATTCTTTTTCTTTTTTGTTGACTAATTTTGATATTTTTCTTATATGCCGTGTTACGTTTTGGACAATTTGGCTTGTTATTTTTTTGTTAATATAACCAATTGACACGTAAGAAGATGAACAACTATGAAAACAAATAATACAACCATGAAAACTCCAATAGATAATTCATCATGTTCTAGAAAATAATTGAATTTGATTTGCTGAACTGCAATTTGAACGGCCTATAGTCTACCATCATATTATAAATTACAACTAATTTACTTTATTGTTTATTCATATAGAAAGAAACAATATTTAAATGCAAAAAAGGCTCTATCTGATTCGTTTAATGTTTTCTTTTCATTTTTAGTTAATTTGTTTTCATTAATAAAATAGGAAACAAATTTAGAAATGATGTTTTTATCTTCTATTTTTGACAAAAAATAAGTCTTTATCTTCTATCCTTTATCTTTTCATATGTATTATTTAAATAAAAACTGAATCCAAAACGAAAACTTTAAAAAATGATACACTAATTTTTACAATGAGTAGTGATATCCTGATCACTCTATGCAACAAATCCTTCATTCTACACCTCCATGTGACATGTTGGTGGAAGAGAAAGAAAAGGAATGATAAAAGGAAAAGGAAATAGAAAATAAAAAAACCACATGAGATGTTATATGAGTGGTATGGGTTAACACCCTTTTTTTTTTTTCATACCACTCATATATCATCTCATGTGACATTTTTTATTTTATATTTTCATTCCTTTTTGTCATTCTCTTTTTCTCTCTTCCACCAAACATCACGGTGTGGTGTAGAAGGGATGGTTTGCCACGTGGGGTGGCTTCTTTTACAATTTTTAACTTAACATGTCAATTTTGTCAAAAAATAAGAAAAATGTTACATAGACACCATTTATTCCTATATACCCTTGTACATCGCATACACTAGGAAGAGAGAAGAGGAGAGGAAAGAGAAAATGTGCTTGTGCGAGGTCCATGTGGCCATGTGTCAGATTTTTGTGTGGGTGTCAAGAGGTATATTGCCACCTAAGGGTGTCTATGTATCATAACTCAAAAAATAAACGTGTTGATTGGACTCCTCTATTTTTTTGTGCGTGTATTCATGTGTCTAAGTACTTACTATAAGCAATGCCTTATGTGCTTATTTCTCTAATTTAAATGCGCCAACCATGAGTATAGGAGTTAAGCAGTCAACAGGAATATTTGAAGCTGAAGGCACGTTATGAAGCATTACAACGATCCCAGCGGTAATGATTAATCTCTATTTCATTTTTATCTTTAAATACTGTTGATAACAGAGTGCCCAATACTGTTTTTAACTGTGGCCTTGATAGGAACCTTATGGGAGAAGATCTTGGCCCTCTGAGCAGCAAAGAGCTCGAGTCGCTTGAAAGGCAGCTAGATTCCTCCTTGAAGCAAATAAGATCCACAAGGGTACTCATCAATTTCCAAATTTTGACATTGCCATTTGCTATATGAAATTCCAAAGGAAAACATAATCCTAAAGTTCCAATCATTATCCCCACATTTAAGCCCATTTTGAGAGTTTTAGCTAAGTTATTGTTCTGCATTAAGTTACAGAAGACTTGGAAATGATATAGACTTCGCTGGTATTCACAGAAGTGGTCTAGAAGTTGACACAGTAGCTAAATCTAGTAATTAAATTTATTTAATAGAGTATCAGAGGTAATTTAACTCATACAACTGTGTTCTTAATAAGCACAGAAATTTATTTGAAGAAAAAAAGCTTAACTTAAGCACAAGGTGTGCTATGCAGAAGTATACAATAAAGTCTGAATCAAATTTCATGAATTATGATACCAAAAGGTTAGGAAATTAAAAATACTAAGCCTAGCCGCTCAAGACTGCATACATGCAACAATGCATATGAAGAAATAGGTGCAGAGGAGAGCTTGGATAAGGGCATATGCATATTCGAGGTTTATCTATTCTGATTAATCGTTGTTGCGCTGAATAAATAGATATTTGTAGGGTCTAAAGCATGGATAAACCAATCGGTTTATTTCCCTTTTCTTCTAGTGGTTGTGGGGCTGGATGGTTTAATAAACCAAACAATATCTCTTGCCTTTTTGGTGGCTTTGAGATTGGTGAGGGTAGGTCAGATGTGATAGTATCTCACTTGAAGTTTGTAGATGATGCTCTTTTAATTGGGGAGGCTAGTGTAGAAACACTGTGGGTAATGAAGGTCGATTCTAAGATGATTTGAGTTAGCTTTTAGTTTGAAAGTGAGATTCTTTAAGAGTAGACTTTCTTGTGTAAAGTCGATTCTTCCTTCATCTCAATGGCTGCACAGTTTCTCAATTGTAAGCTAGGGTTGCTGATGTTTATATACCTTGGAGGCTTGGACTACTGGTTTGTGTTAGCCCTAGGAAGGTGTCAACATGGCAACCATCGTTGAAAGTTCTTCGAAAACAGATTGGGATCGTGGCAAAACAGATTGGAATCCAAAGAGTCACTAATGACAAAACAAGAAGCCACTGCTAACTGAAACTGAACTATCCTTCATTAGTTTAATCTGTAATAATGATAAGGAGGTTAAGGATTCTATCTCCACCAACAATATATATGACTGACATTAGCATATACTACCACTAACATACTAATATTTTTCATATGAAAAAAATTGTAATCTTTGAAGTAAAAACTCTTAATTATTTGCATTCTTCATTGGAAGTAAATACAGTATATATATGTTATTTAATTTTGTAAATTTGTTTCCTTTACAGACCCAATTCATGCTGGACCAGCTGTCTGATCTTCAACGCAAGGTATGAGAATAATTTTTCTTTCCCTTTCGACTGTATGATGATATCTTCTTCTAGCAGTCAGCTTTTACTCACCAATTAATGTTACTTATGTAGGAACATATGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGGTACGTACATAAAAAACACCTCATCAATCATGTTAAGTTAAAGAAATCAACAAAAATATATATGACCAAGCAACTGATATTGTCATATTGAAAATCAGTAAGTGACTCTTTGTTATTTAGCAGTTGGAAGGGTATCAATTGAATCAACTCCAAATGAATGCATGTGTTGAAGAAATGGGCTATGGTCGGCATCCAAGTCAAACTCAGGGTGATGGTCTTTATCAACAATTGGAGTGTGAGCCAACTTTACAAATTGGGTAAGCACTTTTTCTTGGCTCAATCATTGATCATGGTTGATAATGTTTTGATCACACTTCACACTCAACTATGTTGCAAACATCATGATGTGCATTTCTTTTAGGCATTTGATATCTTAAGAATAGCATGTGTGATGCAAATATGATTAGTACTAGTGTTGCTTGATATGTAAGCTTAAATGACAACTGAATTCGAACATAAGCAATTTCAAATAGCCACACTAGGAATGGATTAGTACTGTAGTAAGCTTAAAGTTATGATTTAAATTTCATTGGCACCAATTATACCAAAAAAATAGACAAGTTTTTGTGTAATAAAATGGGTTTGGGTTTTTATTAAAGAAAATTGGGGATATGATATGATACGATACTAAATTCATTTGATAACCAAATTATAATATATTGTTAAGAGATTAATCTCTACGCATGTAAATATTTTTTTACGCATATACATCCAATCAAATTTCATTATTGTGTCACTTTCATAGGTCATTCCTAAAATATCTCCACAAAAACATGTGGAGTGATCTGACTTGATGCATGTGTAAAAAACAATCATACAATCGGTGTATACAAATTAAATCTATATTTTTTTTTTGGTAGTGCAATTAAATTATTATTATCATTGTTATTTTAATATTGATTTGTTTTATTTTGATCTGAATAAAATGATATTTGTTTAAGTTGCAGCTATCAGCCGGATCCAGGGTCAGTCTGTACGGCAGGACCAAGCATGAGTAATTACATGGGAGGATGGTTACCATAG

Protein sequence

>MS.gene09016.t1

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSAREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRQLEGYQLNQLQMNACVEEMGYGRHPSQTQGDGLYQQLECEPTLQIGYQPDPGSVCTAGPSMSNYMGGWLP