Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09028.t1 | XP_013446576.1 | 92.7 | 395 | 28 | 1 | 1 | 395 | 1 | 394 | 5.60E-201 | 710.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09028.t1 | Q9S840 | 36.2 | 425 | 201 | 17 | 1 | 394 | 1 | 386 | 4.1e-35 | 150.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09028.t1 | A0A072TUS3 | 92.7 | 395 | 28 | 1 | 1 | 395 | 1 | 394 | 4.1e-201 | 710.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09028.t1 | TF | SBP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09028.t1 | MTR_8g080670 | 91.971 | 411 | 32 | 1 | 1 | 411 | 1 | 410 | 0.0 | 716 |
| MS.gene09028.t1 | MTR_8g080680 | 61.731 | 439 | 103 | 4 | 1 | 423 | 1 | 390 | 5.36e-179 | 506 |
| MS.gene09028.t1 | MTR_8g080690 | 61.975 | 405 | 109 | 7 | 1 | 389 | 1 | 376 | 6.91e-143 | 413 |
| MS.gene09028.t1 | MTR_3g085180 | 50.441 | 454 | 189 | 12 | 1 | 438 | 1 | 434 | 1.01e-114 | 343 |
| MS.gene09028.t1 | MTR_1g053715 | 35.517 | 290 | 146 | 8 | 124 | 387 | 17 | 291 | 6.59e-35 | 133 |
| MS.gene09028.t1 | MTR_8g463140 | 63.158 | 76 | 28 | 0 | 160 | 235 | 62 | 137 | 5.19e-29 | 112 |
| MS.gene09028.t1 | MTR_7g092930 | 65.789 | 76 | 26 | 0 | 160 | 235 | 65 | 140 | 2.55e-28 | 114 |
| MS.gene09028.t1 | MTR_4g088555 | 58.140 | 86 | 34 | 1 | 151 | 236 | 53 | 136 | 4.39e-27 | 106 |
| MS.gene09028.t1 | MTR_8g005960 | 44.521 | 146 | 70 | 4 | 95 | 235 | 120 | 259 | 4.71e-27 | 110 |
| MS.gene09028.t1 | MTR_2g078770 | 54.945 | 91 | 40 | 1 | 145 | 235 | 41 | 130 | 5.38e-27 | 106 |
| MS.gene09028.t1 | MTR_7g444860 | 45.038 | 131 | 52 | 2 | 117 | 235 | 99 | 221 | 1.19e-25 | 106 |
| MS.gene09028.t1 | MTR_5g046670 | 43.548 | 124 | 55 | 2 | 127 | 235 | 193 | 316 | 1.69e-24 | 106 |
| MS.gene09028.t1 | MTR_4g109770 | 39.490 | 157 | 71 | 5 | 100 | 235 | 42 | 195 | 3.44e-24 | 105 |
| MS.gene09028.t1 | MTR_2g014200 | 57.333 | 75 | 32 | 0 | 161 | 235 | 62 | 136 | 9.38e-24 | 97.1 |
| MS.gene09028.t1 | MTR_7g028740 | 51.765 | 85 | 41 | 0 | 151 | 235 | 65 | 149 | 3.56e-23 | 100 |
| MS.gene09028.t1 | MTR_3g099080 | 45.872 | 109 | 57 | 1 | 163 | 271 | 98 | 204 | 8.07e-23 | 99.8 |
| MS.gene09028.t1 | MTR_2g461920 | 41.406 | 128 | 59 | 3 | 123 | 235 | 117 | 243 | 1.50e-22 | 100 |
| MS.gene09028.t1 | MTR_1g035010 | 45.872 | 109 | 51 | 2 | 128 | 235 | 75 | 176 | 2.68e-21 | 97.4 |
| MS.gene09028.t1 | MTR_2g046550 | 46.218 | 119 | 56 | 2 | 128 | 242 | 104 | 218 | 3.04e-21 | 97.4 |
| MS.gene09028.t1 | MTR_8g096780 | 44.737 | 114 | 60 | 1 | 163 | 276 | 99 | 209 | 3.24e-21 | 95.5 |
| MS.gene09028.t1 | MTR_1g086250 | 56.757 | 74 | 32 | 0 | 162 | 235 | 146 | 219 | 1.30e-20 | 95.5 |
| MS.gene09028.t1 | MTR_7g110320 | 41.538 | 130 | 68 | 3 | 128 | 257 | 113 | 234 | 3.57e-20 | 94.0 |
| MS.gene09028.t1 | MTR_7g110320 | 38.125 | 160 | 87 | 4 | 128 | 287 | 113 | 260 | 5.10e-20 | 93.6 |
| MS.gene09028.t1 | MTR_2g020620 | 32.934 | 167 | 95 | 5 | 170 | 330 | 97 | 252 | 1.04e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09028.t1 | AT5G43270 | 33.949 | 433 | 200 | 18 | 1 | 394 | 1 | 386 | 3.08e-39 | 146 |
| MS.gene09028.t1 | AT5G43270 | 33.949 | 433 | 200 | 18 | 1 | 394 | 1 | 386 | 3.08e-39 | 146 |
| MS.gene09028.t1 | AT5G43270 | 33.949 | 433 | 200 | 18 | 1 | 394 | 1 | 386 | 3.08e-39 | 146 |
| MS.gene09028.t1 | AT1G27360 | 43.359 | 256 | 115 | 9 | 1 | 235 | 1 | 247 | 1.38e-38 | 144 |
| MS.gene09028.t1 | AT1G27360 | 43.359 | 256 | 115 | 9 | 1 | 235 | 1 | 247 | 1.38e-38 | 144 |
| MS.gene09028.t1 | AT1G27360 | 43.359 | 256 | 115 | 9 | 1 | 235 | 1 | 247 | 1.38e-38 | 144 |
| MS.gene09028.t1 | AT1G27360 | 43.359 | 256 | 115 | 9 | 1 | 235 | 1 | 247 | 1.38e-38 | 144 |
| MS.gene09028.t1 | AT1G27370 | 41.634 | 257 | 119 | 9 | 1 | 235 | 1 | 248 | 1.66e-35 | 134 |
| MS.gene09028.t1 | AT1G27370 | 41.634 | 257 | 119 | 9 | 1 | 235 | 1 | 248 | 2.75e-35 | 135 |
| MS.gene09028.t1 | AT1G27370 | 41.634 | 257 | 119 | 9 | 1 | 235 | 1 | 248 | 2.75e-35 | 135 |
| MS.gene09028.t1 | AT1G27370 | 41.634 | 257 | 119 | 9 | 1 | 235 | 1 | 248 | 2.75e-35 | 135 |
| MS.gene09028.t1 | AT1G27370 | 41.634 | 257 | 119 | 9 | 1 | 235 | 1 | 248 | 2.75e-35 | 135 |
| MS.gene09028.t1 | AT1G27370 | 41.634 | 257 | 119 | 9 | 1 | 235 | 1 | 248 | 2.75e-35 | 135 |
| MS.gene09028.t1 | AT1G27370 | 41.634 | 257 | 119 | 9 | 1 | 235 | 1 | 248 | 2.75e-35 | 135 |
| MS.gene09028.t1 | AT2G42200 | 45.517 | 145 | 56 | 4 | 161 | 305 | 72 | 193 | 1.10e-28 | 116 |
| MS.gene09028.t1 | AT3G57920 | 49.541 | 109 | 48 | 2 | 130 | 235 | 27 | 131 | 1.73e-27 | 112 |
| MS.gene09028.t1 | AT1G02065 | 50.000 | 114 | 51 | 1 | 128 | 235 | 147 | 260 | 4.23e-27 | 111 |
| MS.gene09028.t1 | AT1G69170 | 62.069 | 87 | 30 | 2 | 151 | 235 | 111 | 196 | 6.94e-27 | 112 |
| MS.gene09028.t1 | AT2G33810 | 58.667 | 75 | 31 | 0 | 162 | 236 | 53 | 127 | 9.65e-25 | 99.4 |
| MS.gene09028.t1 | AT3G15270 | 56.757 | 74 | 32 | 0 | 162 | 235 | 62 | 135 | 3.54e-23 | 96.7 |
| MS.gene09028.t1 | AT1G53160 | 58.108 | 74 | 31 | 0 | 162 | 235 | 53 | 126 | 2.73e-22 | 94.0 |
| MS.gene09028.t1 | AT1G53160 | 58.108 | 74 | 31 | 0 | 162 | 235 | 53 | 126 | 2.73e-22 | 94.0 |
| MS.gene09028.t1 | AT1G53160 | 58.108 | 74 | 31 | 0 | 162 | 235 | 53 | 126 | 2.80e-22 | 94.0 |
| MS.gene09028.t1 | AT5G50670 | 54.667 | 75 | 34 | 0 | 161 | 235 | 99 | 173 | 3.60e-22 | 97.8 |
| MS.gene09028.t1 | AT5G50670 | 54.667 | 75 | 34 | 0 | 161 | 235 | 99 | 173 | 3.60e-22 | 97.8 |
| MS.gene09028.t1 | AT5G50570 | 54.667 | 75 | 34 | 0 | 161 | 235 | 99 | 173 | 3.60e-22 | 97.8 |
| MS.gene09028.t1 | AT5G50570 | 54.667 | 75 | 34 | 0 | 161 | 235 | 99 | 173 | 3.60e-22 | 97.8 |
| MS.gene09028.t1 | AT3G60030 | 57.534 | 73 | 31 | 0 | 163 | 235 | 127 | 199 | 2.88e-21 | 97.4 |
| MS.gene09028.t1 | AT2G47070 | 48.958 | 96 | 42 | 1 | 140 | 235 | 90 | 178 | 1.11e-20 | 95.5 |
| MS.gene09028.t1 | AT1G20980 | 56.000 | 75 | 33 | 0 | 161 | 235 | 118 | 192 | 4.57e-20 | 94.0 |
| MS.gene09028.t1 | AT1G76580 | 56.000 | 75 | 33 | 0 | 161 | 235 | 112 | 186 | 1.78e-19 | 91.7 |
| MS.gene09028.t1 | AT1G76580 | 56.000 | 75 | 33 | 0 | 161 | 235 | 112 | 186 | 1.96e-19 | 91.7 |
| MS.gene09028.t1 | AT1G76580 | 56.000 | 75 | 33 | 0 | 161 | 235 | 112 | 186 | 3.40e-19 | 91.3 |
| MS.gene09028.t1 | AT1G02065 | 47.191 | 89 | 41 | 1 | 128 | 210 | 147 | 235 | 2.48e-17 | 81.6 |
| MS.gene09028.t1 | AT5G18830 | 46.575 | 73 | 39 | 0 | 163 | 235 | 138 | 210 | 6.26e-16 | 80.9 |
| MS.gene09028.t1 | AT5G18830 | 46.575 | 73 | 39 | 0 | 163 | 235 | 138 | 210 | 7.01e-16 | 80.9 |
| MS.gene09028.t1 | AT5G18830 | 46.575 | 73 | 39 | 0 | 163 | 235 | 138 | 210 | 7.32e-16 | 80.5 |
| MS.gene09028.t1 | AT2G47070 | 60.417 | 48 | 19 | 0 | 188 | 235 | 2 | 49 | 1.87e-11 | 66.6 |
Find 79 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGATCTGTTTGAGTTTGA+TGG | 0.225842 | 4.4:+15385871 | MS.gene09028:CDS |
| CATTGATCCTCTTGGTTTCA+AGG | 0.239743 | 4.4:-15386984 | None:intergenic |
| CAAGGACTTTGGATGTAAAA+TGG | 0.260990 | 4.4:-15386966 | None:intergenic |
| TCAATCTAAAACTCGGTAAA+AGG | 0.273664 | 4.4:+15385424 | MS.gene09028:CDS |
| TTTAAACCTAACAAATTTAC+AGG | 0.280708 | 4.4:+15387557 | MS.gene09028:CDS |
| ACTTTCAAATGCAAATTTAC+TGG | 0.299044 | 4.4:-15385301 | None:intergenic |
| TATAACTACCATAGGAGATT+TGG | 0.321384 | 4.4:-15385607 | None:intergenic |
| GCTTCAATAGGCCCTTCTTT+AGG | 0.325945 | 4.4:-15385357 | None:intergenic |
| CCTCTTGGTTTCAAGGACTT+TGG | 0.327846 | 4.4:-15386977 | None:intergenic |
| AGCTTGCCTGTAAATTTGTT+AGG | 0.354525 | 4.4:-15387563 | None:intergenic |
| AGCTTTACCTGCTACATTGC+TGG | 0.356873 | 4.4:-15385653 | None:intergenic |
| ACAAAGATGATTGACTTGAT+TGG | 0.359832 | 4.4:-15385966 | None:intergenic |
| CTCTAGCCTCATCAGAATAT+TGG | 0.364549 | 4.4:+15387409 | MS.gene09028:CDS |
| GTGCCAATGTTGTCGTTTAT+AGG | 0.365991 | 4.4:-15386904 | None:intergenic |
| TATGGTAGTTATAGATGGTT+TGG | 0.373519 | 4.4:+15385617 | MS.gene09028:CDS |
| GCAGTCTTTGAATAAGCAAA+TGG | 0.377299 | 4.4:-15386814 | None:intergenic |
| CAAAGATGATTGACTTGATT+GGG | 0.382950 | 4.4:-15385965 | None:intergenic |
| TGCTATGGCTTGAGCGGTAC+TGG | 0.386033 | 4.4:-15387364 | None:intergenic |
| TCTCCTATGGTAGTTATAGA+TGG | 0.387501 | 4.4:+15385612 | MS.gene09028:CDS |
| CTGACCTGCATTGATCCTCT+TGG | 0.395116 | 4.4:-15386992 | None:intergenic |
| CTCCCTCTTCACAGTGGGAA+TGG | 0.400387 | 4.4:+15385061 | MS.gene09028:CDS |
| CCAACTGGAAGTGGTTATTC+TGG | 0.417567 | 4.4:+15385195 | MS.gene09028:CDS |
| CTCTGCCAGGTCGAAGGTTG+TGG | 0.429828 | 4.4:+15385525 | MS.gene09028:CDS |
| CATCAAACTCAAACAGATCA+TGG | 0.444519 | 4.4:-15385870 | None:intergenic |
| TCCCTCTTCACAGTGGGAAT+GGG | 0.446844 | 4.4:+15385062 | MS.gene09028:CDS |
| GGTGCATTAGAAGCTTCAAT+AGG | 0.450824 | 4.4:-15385369 | None:intergenic |
| ATGTTCTAGAGAAACGGATT+TGG | 0.460049 | 4.4:-15387328 | None:intergenic |
| AAAATTGAATTACCTAAAGA+AGG | 0.460103 | 4.4:+15385345 | MS.gene09028:CDS |
| TGGTTGTTCGATACGCCAAC+TGG | 0.470221 | 4.4:+15385180 | MS.gene09028:CDS |
| ATCTGAATGTTCTAGAGAAA+CGG | 0.471048 | 4.4:-15387334 | None:intergenic |
| CAATCAGTTCATCACCAACT+AGG | 0.472722 | 4.4:+15385265 | MS.gene09028:CDS |
| TTCGATACGCCAACTGGAAG+TGG | 0.476010 | 4.4:+15385186 | MS.gene09028:CDS |
| ACATTGTAAGTTCTGAGCAT+TGG | 0.495722 | 4.4:-15385496 | None:intergenic |
| AATTCGATACTCCAGTTTGG+TGG | 0.496264 | 4.4:-15385138 | None:intergenic |
| GACGCGTCATCTTTAGTTGT+TGG | 0.503063 | 4.4:+15385459 | MS.gene09028:CDS |
| ACAATGTCCGCCTCTCTGCC+AGG | 0.506752 | 4.4:+15385512 | MS.gene09028:CDS |
| TCTAATTCGATACTCCAGTT+TGG | 0.509220 | 4.4:-15385141 | None:intergenic |
| TGACAGAAGAGAGGAAGCAC+AGG | 0.512878 | 4.4:-15387280 | None:intergenic |
| CAGTCTTTGAATAAGCAAAT+GGG | 0.517662 | 4.4:-15386813 | None:intergenic |
| GATAGCATAGTTACAGTACT+TGG | 0.519974 | 4.4:-15386928 | None:intergenic |
| CTCTTCTGTCAACCAGTCCG+TGG | 0.520942 | 4.4:+15387292 | MS.gene09028:CDS |
| TTTACCATTGGAATCATCAT+GGG | 0.526394 | 4.4:-15385325 | None:intergenic |
| CGTCATCTTTAGTTGTTGGA+AGG | 0.527554 | 4.4:+15385463 | MS.gene09028:CDS |
| CCGCCTCTCTGCCAGGTCGA+AGG | 0.528190 | 4.4:+15385519 | MS.gene09028:CDS |
| AGATCATTCCAAATCTCCTA+TGG | 0.535644 | 4.4:+15385599 | MS.gene09028:CDS |
| TCCCATTCCCACTGTGAAGA+GGG | 0.540524 | 4.4:-15385063 | None:intergenic |
| TTGTGGCCTTGACCTTTCAT+CGG | 0.541799 | 4.4:+15385542 | MS.gene09028:CDS |
| CGCATATGAATCCCACGGAC+TGG | 0.545835 | 4.4:-15387304 | None:intergenic |
| TAGACCGAGAAAATAATGTC+TGG | 0.549417 | 4.4:+15385160 | MS.gene09028:CDS |
| AATCAGTTCATCACCAACTA+GGG | 0.553568 | 4.4:+15385266 | MS.gene09028:CDS |
| CTGAGTGAAAACACGACTCA+AGG | 0.554639 | 4.4:-15387530 | None:intergenic |
| AAACCATCTATAACTACCAT+AGG | 0.563385 | 4.4:-15385615 | None:intergenic |
| CTGACTCGTTGTGTGTGCTA+TGG | 0.564583 | 4.4:-15387379 | None:intergenic |
| TCTTCTGTCAACCAGTCCGT+GGG | 0.576912 | 4.4:+15387293 | MS.gene09028:CDS |
| CAAAATCTCCCTCTTCACAG+TGG | 0.581497 | 4.4:+15385055 | MS.gene09028:CDS |
| AAATTGAATTACCTAAAGAA+GGG | 0.590524 | 4.4:+15385346 | MS.gene09028:CDS |
| CGGTAAAAGGATGAAATTCG+AGG | 0.600138 | 4.4:+15385437 | MS.gene09028:CDS |
| ATCCCATTCCCACTGTGAAG+AGG | 0.602683 | 4.4:-15385064 | None:intergenic |
| CTAGATACACAAGAAAGCAT+TGG | 0.604314 | 4.4:-15385390 | None:intergenic |
| CCATTGCTCAATCTAAAACT+CGG | 0.604403 | 4.4:+15385417 | MS.gene09028:CDS |
| AAAATCTCCCTCTTCACAGT+GGG | 0.605421 | 4.4:+15385056 | MS.gene09028:CDS |
| CAAGGCCACAACCTTCGACC+TGG | 0.611010 | 4.4:-15385530 | None:intergenic |
| CCTTCGACCTGGCAGAGAGG+CGG | 0.613394 | 4.4:-15385519 | None:intergenic |
| AAGCCTATAAACGACAACAT+TGG | 0.614145 | 4.4:+15386901 | MS.gene09028:CDS |
| GAAACCAAGAGGATCAATGC+AGG | 0.614595 | 4.4:+15386988 | MS.gene09028:CDS |
| AGTTCCCATGATGATTCCAA+TGG | 0.616986 | 4.4:+15385321 | MS.gene09028:CDS |
| GTATCGGGTAATGGTAGGTG+AGG | 0.619341 | 4.4:-15385087 | None:intergenic |
| TGAGTGTGAGATCCACATGC+TGG | 0.620728 | 4.4:-15387460 | None:intergenic |
| CCAGAATAACCACTTCCAGT+TGG | 0.626070 | 4.4:-15385195 | None:intergenic |
| CAATATTCTGATGAGGCTAG+AGG | 0.629859 | 4.4:-15387408 | None:intergenic |
| AATATGTCGATTCCAGCATG+TGG | 0.630965 | 4.4:+15387448 | MS.gene09028:CDS |
| CCAAAGTCCTTGAAACCAAG+AGG | 0.636381 | 4.4:+15386977 | MS.gene09028:CDS |
| CAACCTTCGACCTGGCAGAG+AGG | 0.639107 | 4.4:-15385522 | None:intergenic |
| TTTGGATGTAAAATGGACAT+CGG | 0.653646 | 4.4:-15386959 | None:intergenic |
| CGGACTGGTTGACAGAAGAG+AGG | 0.658311 | 4.4:-15387289 | None:intergenic |
| ACTGTGCCAATATTCTGATG+AGG | 0.658353 | 4.4:-15387415 | None:intergenic |
| TCTTTGTCTTCGTCACCCTG+TGG | 0.667989 | 4.4:+15385982 | MS.gene09028:CDS |
| TTGGTCGCATATGAATCCCA+CGG | 0.682290 | 4.4:-15387309 | None:intergenic |
| TGTGTGTGCTATGGCTTGAG+CGG | 0.704952 | 4.4:-15387370 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAACATAATCTATTTATTT+TGG | + | chr4.4:15387082-15387101 | MS.gene09028:intron | 10.0% |
| !! | AAACATAAATGAACTAAAAT+TGG | - | chr4.4:15386685-15386704 | None:intergenic | 15.0% |
| !!! | AGGAAATAATAGTATTATTT+TGG | + | chr4.4:15385714-15385733 | MS.gene09028:intron | 15.0% |
| !!! | ATTAAACTTGCTTTTTTTTT+TGG | + | chr4.4:15385791-15385810 | MS.gene09028:intron | 15.0% |
| !! | AAAATTGAATTACCTAAAGA+AGG | + | chr4.4:15385345-15385364 | MS.gene09028:CDS | 20.0% |
| !! | AAATTGAATTACCTAAAGAA+GGG | + | chr4.4:15385346-15385365 | MS.gene09028:CDS | 20.0% |
| !! | TGTAATTGATTAGAGTAATA+TGG | + | chr4.4:15387142-15387161 | MS.gene09028:intron | 20.0% |
| !! | TTTAAACCTAACAAATTTAC+AGG | + | chr4.4:15387557-15387576 | MS.gene09028:CDS | 20.0% |
| !!! | AGTTGAATTTTTATTACATG+AGG | - | chr4.4:15386627-15386646 | None:intergenic | 20.0% |
| !!! | ATTTATTTCATGGATCTTTT+TGG | + | chr4.4:15386323-15386342 | MS.gene09028:intron | 20.0% |
| !!! | CAGTTTTACAATAATGATTA+CGG | - | chr4.4:15385945-15385964 | None:intergenic | 20.0% |
| !!! | CTCATTTTTCATTTATTTCA+TGG | + | chr4.4:15386313-15386332 | MS.gene09028:intron | 20.0% |
| ! | AAACTTAGTAGAAAATCATG+AGG | - | chr4.4:15387042-15387061 | None:intergenic | 25.0% |
| ! | AATCAAATAACAAGCAGAAA+CGG | - | chr4.4:15386043-15386062 | None:intergenic | 25.0% |
| ! | ACTTTCAAATGCAAATTTAC+TGG | - | chr4.4:15385304-15385323 | None:intergenic | 25.0% |
| ! | AGAAAAATAAGTATTACCAC+AGG | - | chr4.4:15386001-15386020 | None:intergenic | 25.0% |
| ! | GAAAAATAAGTATTACCACA+GGG | - | chr4.4:15386000-15386019 | None:intergenic | 25.0% |
| ! | GATTAAGCATCTTTATCTTT+AGG | - | chr4.4:15386368-15386387 | None:intergenic | 25.0% |
| ! | GATTAGAAGATAAAAGAGAA+TGG | - | chr4.4:15386758-15386777 | None:intergenic | 25.0% |
| !! | AGGTAATTCAATTTTACCAT+TGG | - | chr4.4:15385340-15385359 | None:intergenic | 25.0% |
| !! | ATTTTCAGTAGCTTTTGTAT+CGG | - | chr4.4:15385106-15385125 | None:intergenic | 25.0% |
| !! | TCAAGAGAAAATCTTTTGTT+TGG | - | chr4.4:15386882-15386901 | None:intergenic | 25.0% |
| !!! | AACTTGCTTTTTTTTTTGGA+TGG | + | chr4.4:15385795-15385814 | MS.gene09028:intron | 25.0% |
| !!! | AAGAGAAAATCTTTTGTTTG+GGG | - | chr4.4:15386880-15386899 | None:intergenic | 25.0% |
| !!! | CAAGAGAAAATCTTTTGTTT+GGG | - | chr4.4:15386881-15386900 | None:intergenic | 25.0% |
| !!! | TAATTTTTGGTTCTACATCA+GGG | + | chr4.4:15385226-15385245 | MS.gene09028:CDS | 25.0% |
| !!! | TGTATAGTGGATTTACTTAA+TGG | + | chr4.4:15386510-15386529 | MS.gene09028:intron | 25.0% |
| !!! | TTCTGCTTGTTATTTGATTT+AGG | + | chr4.4:15386044-15386063 | MS.gene09028:intron | 25.0% |
| AAAAATTACAACCACCAAAC+TGG | + | chr4.4:15385127-15385146 | MS.gene09028:CDS | 30.0% | |
| AAACAGTTATCGTGATTGTT+TGG | + | chr4.4:15386540-15386559 | MS.gene09028:intron | 30.0% | |
| AAACCATCTATAACTACCAT+AGG | - | chr4.4:15385618-15385637 | None:intergenic | 30.0% | |
| AAATGAATAACACTGTGCAA+AGG | - | chr4.4:15387190-15387209 | None:intergenic | 30.0% | |
| AACTAAAATTGGCTACTCTT+CGG | - | chr4.4:15386674-15386693 | None:intergenic | 30.0% | |
| AATGAATAACACTGTGCAAA+GGG | - | chr4.4:15387189-15387208 | None:intergenic | 30.0% | |
| ATAATAACCATGCAGAGTAA+TGG | + | chr4.4:15386443-15386462 | MS.gene09028:intron | 30.0% | |
| CAGTCTTTGAATAAGCAAAT+GGG | - | chr4.4:15386816-15386835 | None:intergenic | 30.0% | |
| TACCTATAAAGTTAGTAAGC+AGG | - | chr4.4:15386202-15386221 | None:intergenic | 30.0% | |
| TATAACTACCATAGGAGATT+TGG | - | chr4.4:15385610-15385629 | None:intergenic | 30.0% | |
| TATGGTAGTTATAGATGGTT+TGG | + | chr4.4:15385617-15385636 | MS.gene09028:CDS | 30.0% | |
| TCATATTAGAGTTGCTAGAA+GGG | + | chr4.4:15386466-15386485 | MS.gene09028:intron | 30.0% | |
| TGATGTTCCTAAAACTAGAT+TGG | + | chr4.4:15386578-15386597 | MS.gene09028:intron | 30.0% | |
| TGTTTGGATCTAATTGACAT+AGG | + | chr4.4:15385694-15385713 | MS.gene09028:intron | 30.0% | |
| TTAACAACGGTATGATTGTT+TGG | + | chr4.4:15385678-15385697 | MS.gene09028:intron | 30.0% | |
| TTACTCTAATCAATTACACC+TGG | - | chr4.4:15387140-15387159 | None:intergenic | 30.0% | |
| TTATCTTATTCGTGTCACAA+AGG | - | chr4.4:15386390-15386409 | None:intergenic | 30.0% | |
| TTCCTGCTTACTAACTTTAT+AGG | + | chr4.4:15386197-15386216 | MS.gene09028:intron | 30.0% | |
| TTTACCATTGGAATCATCAT+GGG | - | chr4.4:15385328-15385347 | None:intergenic | 30.0% | |
| TTTGGATGTAAAATGGACAT+CGG | - | chr4.4:15386962-15386981 | None:intergenic | 30.0% | |
| ! | AATAATGTTTTGCCGATGAA+AGG | - | chr4.4:15385557-15385576 | None:intergenic | 30.0% |
| ! | ACAACCAGACATTATTTTCT+CGG | - | chr4.4:15385167-15385186 | None:intergenic | 30.0% |
| ! | TCAATCTAAAACTCGGTAAA+AGG | + | chr4.4:15385424-15385443 | MS.gene09028:CDS | 30.0% |
| ! | TTTGCACAGTGTTATTCATT+TGG | + | chr4.4:15387189-15387208 | MS.gene09028:intron | 30.0% |
| ! | TTTTACCATTGGAATCATCA+TGG | - | chr4.4:15385329-15385348 | None:intergenic | 30.0% |
| ! | TTTTCAGTAGCTTTTGTATC+GGG | - | chr4.4:15385105-15385124 | None:intergenic | 30.0% |
| !! | ACAAAGATGATTGACTTGAT+TGG | - | chr4.4:15385969-15385988 | None:intergenic | 30.0% |
| !! | AGAGAAAATCTTTTGTTTGG+GGG | - | chr4.4:15386879-15386898 | None:intergenic | 30.0% |
| !! | ATCTGAATGTTCTAGAGAAA+CGG | - | chr4.4:15387337-15387356 | None:intergenic | 30.0% |
| !! | CAAAGATGATTGACTTGATT+GGG | - | chr4.4:15385968-15385987 | None:intergenic | 30.0% |
| !! | TTGATTTAGGTTGTTAAACC+TGG | + | chr4.4:15386057-15386076 | MS.gene09028:intron | 30.0% |
| !!! | CTAATTTTTGGTTCTACATC+AGG | + | chr4.4:15385225-15385244 | MS.gene09028:CDS | 30.0% |
| !!! | GACTTCTAGATTTTTTTTCC+AGG | - | chr4.4:15386078-15386097 | None:intergenic | 30.0% |
| AAATCTTCTACACCTGCAAA+AGG | - | chr4.4:15387222-15387241 | None:intergenic | 35.0% | |
| AAGCAGAAACGGATATAAAC+TGG | - | chr4.4:15386032-15386051 | None:intergenic | 35.0% | |
| AAGCCTATAAACGACAACAT+TGG | + | chr4.4:15386901-15386920 | MS.gene09028:CDS | 35.0% | |
| AATATGACCATTACTCTGCA+TGG | - | chr4.4:15386453-15386472 | None:intergenic | 35.0% | |
| AATCAGTTCATCACCAACTA+GGG | + | chr4.4:15385266-15385285 | MS.gene09028:CDS | 35.0% | |
| AGATCATTCCAAATCTCCTA+TGG | + | chr4.4:15385599-15385618 | MS.gene09028:CDS | 35.0% | |
| CAAGGACTTTGGATGTAAAA+TGG | - | chr4.4:15386969-15386988 | None:intergenic | 35.0% | |
| CACTTTGCTTAAAATGCTGA+AGG | + | chr4.4:15385845-15385864 | MS.gene09028:intron | 35.0% | |
| CAGGTAAAGCTTCTTAACAA+CGG | + | chr4.4:15385665-15385684 | MS.gene09028:intron | 35.0% | |
| CATCAAACTCAAACAGATCA+TGG | - | chr4.4:15385873-15385892 | None:intergenic | 35.0% | |
| GATAGCATAGTTACAGTACT+TGG | - | chr4.4:15386931-15386950 | None:intergenic | 35.0% | |
| GCAGTCTTTGAATAAGCAAA+TGG | - | chr4.4:15386817-15386836 | None:intergenic | 35.0% | |
| GTCATATTAGAGTTGCTAGA+AGG | + | chr4.4:15386465-15386484 | MS.gene09028:intron | 35.0% | |
| TAGACCGAGAAAATAATGTC+TGG | + | chr4.4:15385160-15385179 | MS.gene09028:CDS | 35.0% | |
| TCTAATTCGATACTCCAGTT+TGG | - | chr4.4:15385144-15385163 | None:intergenic | 35.0% | |
| TCTCCTATGGTAGTTATAGA+TGG | + | chr4.4:15385612-15385631 | MS.gene09028:CDS | 35.0% | |
| ! | AGCTTGCCTGTAAATTTGTT+AGG | - | chr4.4:15387566-15387585 | None:intergenic | 35.0% |
| ! | AGTGTCTATTGTAACTTGCA+AGG | - | chr4.4:15386226-15386245 | None:intergenic | 35.0% |
| ! | CATGATCTGTTTGAGTTTGA+TGG | + | chr4.4:15385871-15385890 | MS.gene09028:CDS | 35.0% |
| ! | CCATTGCTCAATCTAAAACT+CGG | + | chr4.4:15385417-15385436 | MS.gene09028:CDS | 35.0% |
| ! | CTAGATACACAAGAAAGCAT+TGG | - | chr4.4:15385393-15385412 | None:intergenic | 35.0% |
| ! | GTTTTGCTAATATCCCTAGT+TGG | - | chr4.4:15385282-15385301 | None:intergenic | 35.0% |
| ! | TTTGGTAGAATACCTTTTGC+AGG | + | chr4.4:15387207-15387226 | MS.gene09028:intron | 35.0% |
| !! | ACATTGTAAGTTCTGAGCAT+TGG | - | chr4.4:15385499-15385518 | None:intergenic | 35.0% |
| !! | ATGTTCTAGAGAAACGGATT+TGG | - | chr4.4:15387331-15387350 | None:intergenic | 35.0% |
| !! | GCTGTTTTGTATGTTTTGCA+AGG | - | chr4.4:15386851-15386870 | None:intergenic | 35.0% |
| !!! | ACTCACACCAATCTAGTTTT+AGG | - | chr4.4:15386588-15386607 | None:intergenic | 35.0% |
| AAAATCTCCCTCTTCACAGT+GGG | + | chr4.4:15385056-15385075 | MS.gene09028:CDS | 40.0% | |
| AATTCGATACTCCAGTTTGG+TGG | - | chr4.4:15385141-15385160 | None:intergenic | 40.0% | |
| ACTGTGCCAATATTCTGATG+AGG | - | chr4.4:15387418-15387437 | None:intergenic | 40.0% | |
| AGTTCCCATGATGATTCCAA+TGG | + | chr4.4:15385321-15385340 | MS.gene09028:CDS | 40.0% | |
| CAATATTCTGATGAGGCTAG+AGG | - | chr4.4:15387411-15387430 | None:intergenic | 40.0% | |
| CAATCAGTTCATCACCAACT+AGG | + | chr4.4:15385265-15385284 | MS.gene09028:CDS | 40.0% | |
| CATGGTGGTAGCAATCAATA+TGG | - | chr4.4:15387108-15387127 | None:intergenic | 40.0% | |
| CATTGATCCTCTTGGTTTCA+AGG | - | chr4.4:15386987-15387006 | None:intergenic | 40.0% | |
| CGGTAAAAGGATGAAATTCG+AGG | + | chr4.4:15385437-15385456 | MS.gene09028:CDS | 40.0% | |
| CGTCATCTTTAGTTGTTGGA+AGG | + | chr4.4:15385463-15385482 | MS.gene09028:CDS | 40.0% | |
| CTCTAGCCTCATCAGAATAT+TGG | + | chr4.4:15387409-15387428 | MS.gene09028:CDS | 40.0% | |
| GGTGCATTAGAAGCTTCAAT+AGG | - | chr4.4:15385372-15385391 | None:intergenic | 40.0% | |
| TACACCTGGCAATATTTGCA+TGG | - | chr4.4:15387126-15387145 | None:intergenic | 40.0% | |
| ! | AGGGATTGCTATTAGAGTTG+TGG | + | chr4.4:15386485-15386504 | MS.gene09028:intron | 40.0% |
| ! | GGGATTGCTATTAGAGTTGT+GGG | + | chr4.4:15386486-15386505 | MS.gene09028:intron | 40.0% |
| ! | GTAGCTTTTGTATCGGGTAA+TGG | - | chr4.4:15385099-15385118 | None:intergenic | 40.0% |
| ! | GTGCCAATGTTGTCGTTTAT+AGG | - | chr4.4:15386907-15386926 | None:intergenic | 40.0% |
| !! | AATATGTCGATTCCAGCATG+TGG | + | chr4.4:15387448-15387467 | MS.gene09028:CDS | 40.0% |
| !! | CTTTTGTATCGGGTAATGGT+AGG | - | chr4.4:15385095-15385114 | None:intergenic | 40.0% |
| !!! | CCGAGTTTTAGATTGAGCAA+TGG | - | chr4.4:15385420-15385439 | None:intergenic | 40.0% |
| !!! | TCTGGCTCTGAGCTAATTTT+TGG | + | chr4.4:15385213-15385232 | MS.gene09028:CDS | 40.0% |
| ACCACCATGCAAATATTGCC+AGG | + | chr4.4:15387119-15387138 | MS.gene09028:intron | 45.0% | |
| ACCTGGCAATATTTGCATGG+TGG | - | chr4.4:15387123-15387142 | None:intergenic | 45.0% | |
| AGCTTTACCTGCTACATTGC+TGG | - | chr4.4:15385656-15385675 | None:intergenic | 45.0% | |
| CAAAATCTCCCTCTTCACAG+TGG | + | chr4.4:15385055-15385074 | MS.gene09028:CDS | 45.0% | |
| CAACTATAGCCTGCATAGCA+TGG | - | chr4.4:15386106-15386125 | None:intergenic | 45.0% | |
| CCAAAGTCCTTGAAACCAAG+AGG | + | chr4.4:15386977-15386996 | MS.gene09028:CDS | 45.0% | |
| CCAACTGGAAGTGGTTATTC+TGG | + | chr4.4:15385195-15385214 | MS.gene09028:CDS | 45.0% | |
| CCAGAATAACCACTTCCAGT+TGG | - | chr4.4:15385198-15385217 | None:intergenic | 45.0% | |
| CCTCTTGGTTTCAAGGACTT+TGG | - | chr4.4:15386980-15386999 | None:intergenic | 45.0% | |
| CTGAGTGAAAACACGACTCA+AGG | - | chr4.4:15387533-15387552 | None:intergenic | 45.0% | |
| GAAACCAAGAGGATCAATGC+AGG | + | chr4.4:15386988-15387007 | MS.gene09028:CDS | 45.0% | |
| GACGCGTCATCTTTAGTTGT+TGG | + | chr4.4:15385459-15385478 | MS.gene09028:CDS | 45.0% | |
| GCTTCAATAGGCCCTTCTTT+AGG | - | chr4.4:15385360-15385379 | None:intergenic | 45.0% | |
| TTGGTCGCATATGAATCCCA+CGG | - | chr4.4:15387312-15387331 | None:intergenic | 45.0% | |
| ! | AGTCTAAGACCATGCTATGC+AGG | + | chr4.4:15386094-15386113 | MS.gene09028:intron | 45.0% |
| ! | GATTTTGCCAGCAATGTAGC+AGG | + | chr4.4:15385646-15385665 | MS.gene09028:CDS | 45.0% |
| ! | GTTTTGCCGATGAAAGGTCA+AGG | - | chr4.4:15385551-15385570 | None:intergenic | 45.0% |
| ! | TAGAGTTGTGGGCTGTATAG+TGG | + | chr4.4:15386497-15386516 | MS.gene09028:intron | 45.0% |
| ! | TTGTGGCCTTGACCTTTCAT+CGG | + | chr4.4:15385542-15385561 | MS.gene09028:CDS | 45.0% |
| ATCCCATTCCCACTGTGAAG+AGG | - | chr4.4:15385067-15385086 | None:intergenic | 50.0% | |
| TCCCATTCCCACTGTGAAGA+GGG | - | chr4.4:15385066-15385085 | None:intergenic | 50.0% | |
| TCCCTCTTCACAGTGGGAAT+GGG | + | chr4.4:15385062-15385081 | MS.gene09028:CDS | 50.0% | |
| TCTTCTGTCAACCAGTCCGT+GGG | + | chr4.4:15387293-15387312 | MS.gene09028:CDS | 50.0% | |
| TCTTTGTCTTCGTCACCCTG+TGG | + | chr4.4:15385982-15386001 | MS.gene09028:CDS | 50.0% | |
| TGAGTGTGAGATCCACATGC+TGG | - | chr4.4:15387463-15387482 | None:intergenic | 50.0% | |
| TGGTTGTTCGATACGCCAAC+TGG | + | chr4.4:15385180-15385199 | MS.gene09028:CDS | 50.0% | |
| TGTGTGTGCTATGGCTTGAG+CGG | - | chr4.4:15387373-15387392 | None:intergenic | 50.0% | |
| TTCGATACGCCAACTGGAAG+TGG | + | chr4.4:15385186-15385205 | MS.gene09028:CDS | 50.0% | |
| ! | CTGACCTGCATTGATCCTCT+TGG | - | chr4.4:15386995-15387014 | None:intergenic | 50.0% |
| ! | CTGACTCGTTGTGTGTGCTA+TGG | - | chr4.4:15387382-15387401 | None:intergenic | 50.0% |
| ! | GTATCGGGTAATGGTAGGTG+AGG | - | chr4.4:15385090-15385109 | None:intergenic | 50.0% |
| ! | TGACAGAAGAGAGGAAGCAC+AGG | - | chr4.4:15387283-15387302 | None:intergenic | 50.0% |
| CGCATATGAATCCCACGGAC+TGG | - | chr4.4:15387307-15387326 | None:intergenic | 55.0% | |
| CTCCCTCTTCACAGTGGGAA+TGG | + | chr4.4:15385061-15385080 | MS.gene09028:CDS | 55.0% | |
| CTCTTCTGTCAACCAGTCCG+TGG | + | chr4.4:15387292-15387311 | MS.gene09028:CDS | 55.0% | |
| TGCTATGGCTTGAGCGGTAC+TGG | - | chr4.4:15387367-15387386 | None:intergenic | 55.0% | |
| !! | CGGACTGGTTGACAGAAGAG+AGG | - | chr4.4:15387292-15387311 | None:intergenic | 55.0% |
| ACAATGTCCGCCTCTCTGCC+AGG | + | chr4.4:15385512-15385531 | MS.gene09028:CDS | 60.0% | |
| CAACCTTCGACCTGGCAGAG+AGG | - | chr4.4:15385525-15385544 | None:intergenic | 60.0% | |
| CAAGGCCACAACCTTCGACC+TGG | - | chr4.4:15385533-15385552 | None:intergenic | 60.0% | |
| CTCTGCCAGGTCGAAGGTTG+TGG | + | chr4.4:15385525-15385544 | MS.gene09028:CDS | 60.0% | |
| CCTTCGACCTGGCAGAGAGG+CGG | - | chr4.4:15385522-15385541 | None:intergenic | 65.0% | |
| CCGCCTCTCTGCCAGGTCGA+AGG | + | chr4.4:15385519-15385538 | MS.gene09028:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 15385042 | 15387587 | 15385042 | ID=MS.gene09028 |
| chr4.4 | mRNA | 15385042 | 15387587 | 15385042 | ID=MS.gene09028.t1;Parent=MS.gene09028 |
| chr4.4 | exon | 15385042 | 15385667 | 15385042 | ID=MS.gene09028.t1.exon1;Parent=MS.gene09028.t1 |
| chr4.4 | CDS | 15385042 | 15385667 | 15385042 | ID=cds.MS.gene09028.t1;Parent=MS.gene09028.t1 |
| chr4.4 | exon | 15385867 | 15386003 | 15385867 | ID=MS.gene09028.t1.exon2;Parent=MS.gene09028.t1 |
| chr4.4 | CDS | 15385867 | 15386003 | 15385867 | ID=cds.MS.gene09028.t1;Parent=MS.gene09028.t1 |
| chr4.4 | exon | 15386794 | 15387009 | 15386794 | ID=MS.gene09028.t1.exon3;Parent=MS.gene09028.t1 |
| chr4.4 | CDS | 15386794 | 15387009 | 15386794 | ID=cds.MS.gene09028.t1;Parent=MS.gene09028.t1 |
| chr4.4 | exon | 15387229 | 15387587 | 15387229 | ID=MS.gene09028.t1.exon4;Parent=MS.gene09028.t1 |
| chr4.4 | CDS | 15387229 | 15387587 | 15387229 | ID=cds.MS.gene09028.t1;Parent=MS.gene09028.t1 |
| Gene Sequence |
| Protein sequence |
