Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09131.t1 | XP_003606331.2 | 95.4 | 327 | 13 | 1 | 1 | 327 | 11 | 335 | 7.20E-145 | 523.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09131.t1 | Q0V7X4 | 51.9 | 324 | 136 | 9 | 8 | 325 | 8 | 317 | 7.7e-55 | 215.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09131.t1 | G7JN98 | 95.4 | 327 | 13 | 1 | 1 | 327 | 11 | 335 | 5.2e-145 | 523.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09131.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09131.t1 | MTR_4g057270 | 93.578 | 327 | 19 | 1 | 1 | 327 | 11 | 335 | 0.0 | 599 |
| MS.gene09131.t1 | MTR_2g084280 | 65.109 | 321 | 88 | 10 | 13 | 325 | 9 | 313 | 3.10e-131 | 376 |
| MS.gene09131.t1 | MTR_8g064700 | 32.065 | 184 | 118 | 5 | 132 | 311 | 235 | 415 | 1.23e-19 | 89.4 |
| MS.gene09131.t1 | MTR_3g030700 | 28.829 | 222 | 150 | 5 | 99 | 314 | 153 | 372 | 2.92e-18 | 85.1 |
| MS.gene09131.t1 | MTR_3g104100 | 33.133 | 166 | 92 | 6 | 140 | 294 | 194 | 351 | 8.54e-18 | 83.6 |
| MS.gene09131.t1 | MTR_2g038040 | 31.481 | 162 | 98 | 2 | 140 | 289 | 51 | 211 | 2.45e-17 | 80.5 |
| MS.gene09131.t1 | MTR_8g067280 | 31.429 | 175 | 104 | 5 | 134 | 294 | 452 | 624 | 1.14e-16 | 81.3 |
| MS.gene09131.t1 | MTR_1g112680 | 31.034 | 145 | 73 | 3 | 135 | 252 | 311 | 455 | 4.43e-16 | 79.3 |
| MS.gene09131.t1 | MTR_5g030430 | 31.126 | 151 | 91 | 4 | 145 | 284 | 497 | 645 | 2.93e-15 | 77.0 |
| MS.gene09131.t1 | MTR_2g081040 | 32.738 | 168 | 90 | 7 | 140 | 294 | 176 | 333 | 3.09e-15 | 75.9 |
| MS.gene09131.t1 | MTR_3g498695 | 28.042 | 189 | 122 | 3 | 95 | 269 | 247 | 435 | 3.27e-15 | 76.6 |
| MS.gene09131.t1 | MTR_3g498695 | 36.441 | 118 | 70 | 1 | 95 | 207 | 247 | 364 | 3.43e-15 | 76.6 |
| MS.gene09131.t1 | MTR_4g091910 | 32.903 | 155 | 93 | 5 | 140 | 292 | 46 | 191 | 8.35e-15 | 72.8 |
| MS.gene09131.t1 | MTR_7g083900 | 53.448 | 58 | 27 | 0 | 140 | 197 | 285 | 342 | 1.90e-13 | 71.2 |
| MS.gene09131.t1 | MTR_7g083900 | 53.448 | 58 | 27 | 0 | 140 | 197 | 285 | 342 | 1.95e-13 | 71.2 |
| MS.gene09131.t1 | MTR_8g027495 | 51.923 | 52 | 25 | 0 | 145 | 196 | 462 | 513 | 3.36e-13 | 70.5 |
| MS.gene09131.t1 | MTR_7g117670 | 51.923 | 52 | 25 | 0 | 145 | 196 | 406 | 457 | 5.97e-13 | 69.7 |
| MS.gene09131.t1 | MTR_4g097950 | 27.737 | 137 | 85 | 3 | 143 | 269 | 72 | 204 | 3.73e-12 | 65.9 |
| MS.gene09131.t1 | MTR_8g024790 | 29.592 | 196 | 114 | 7 | 104 | 284 | 247 | 433 | 9.41e-12 | 65.9 |
| MS.gene09131.t1 | MTR_8g024770 | 52.000 | 50 | 24 | 0 | 145 | 194 | 283 | 332 | 3.13e-11 | 64.3 |
| MS.gene09131.t1 | MTR_7g096350 | 28.249 | 177 | 96 | 6 | 134 | 307 | 345 | 493 | 3.72e-11 | 64.3 |
| MS.gene09131.t1 | MTR_0250s0040 | 26.549 | 226 | 128 | 9 | 69 | 279 | 23 | 225 | 4.28e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09131.t1 | AT2G28160 | 51.515 | 330 | 128 | 11 | 8 | 325 | 8 | 317 | 4.68e-95 | 285 |
| MS.gene09131.t1 | AT2G28160 | 50.617 | 324 | 128 | 11 | 8 | 319 | 8 | 311 | 1.16e-90 | 273 |
| MS.gene09131.t1 | AT5G57150 | 40.127 | 157 | 84 | 4 | 140 | 288 | 53 | 207 | 2.40e-24 | 99.4 |
| MS.gene09131.t1 | AT5G57150 | 40.127 | 157 | 84 | 4 | 140 | 288 | 54 | 208 | 2.42e-24 | 99.4 |
| MS.gene09131.t1 | AT5G57150 | 40.127 | 157 | 84 | 4 | 140 | 288 | 54 | 208 | 2.54e-24 | 99.0 |
| MS.gene09131.t1 | AT5G57150 | 40.127 | 157 | 84 | 4 | 140 | 288 | 53 | 207 | 3.78e-24 | 99.4 |
| MS.gene09131.t1 | AT5G57150 | 40.127 | 157 | 84 | 4 | 140 | 288 | 54 | 208 | 1.22e-23 | 98.2 |
| MS.gene09131.t1 | AT2G16910 | 35.260 | 173 | 86 | 3 | 139 | 286 | 312 | 483 | 1.09e-21 | 96.3 |
| MS.gene09131.t1 | AT4G29930 | 35.664 | 143 | 83 | 3 | 140 | 281 | 53 | 187 | 1.82e-20 | 89.0 |
| MS.gene09131.t1 | AT4G29930 | 34.395 | 157 | 89 | 3 | 140 | 294 | 53 | 197 | 4.64e-20 | 87.8 |
| MS.gene09131.t1 | AT4G29930 | 35.211 | 142 | 82 | 3 | 140 | 281 | 53 | 184 | 1.65e-19 | 86.3 |
| MS.gene09131.t1 | AT4G29930 | 30.857 | 175 | 100 | 3 | 140 | 294 | 53 | 226 | 5.34e-19 | 85.5 |
| MS.gene09131.t1 | AT4G29930 | 30.857 | 175 | 100 | 3 | 140 | 294 | 53 | 226 | 5.34e-19 | 85.5 |
| MS.gene09131.t1 | AT4G29930 | 31.481 | 162 | 90 | 3 | 140 | 281 | 53 | 213 | 1.60e-18 | 84.0 |
| MS.gene09131.t1 | AT4G29930 | 55.556 | 63 | 28 | 0 | 140 | 202 | 53 | 115 | 1.06e-16 | 77.4 |
| MS.gene09131.t1 | AT4G17880 | 30.769 | 156 | 99 | 4 | 134 | 284 | 406 | 557 | 6.08e-16 | 79.0 |
| MS.gene09131.t1 | AT1G01260 | 32.164 | 171 | 84 | 5 | 128 | 290 | 412 | 558 | 2.40e-15 | 77.0 |
| MS.gene09131.t1 | AT1G01260 | 32.164 | 171 | 84 | 5 | 128 | 290 | 412 | 558 | 2.40e-15 | 77.0 |
| MS.gene09131.t1 | AT1G01260 | 32.164 | 171 | 84 | 5 | 128 | 290 | 412 | 558 | 2.40e-15 | 77.0 |
| MS.gene09131.t1 | AT2G46510 | 48.101 | 79 | 38 | 1 | 134 | 209 | 385 | 463 | 3.43e-15 | 76.6 |
| MS.gene09131.t1 | AT1G10610 | 35.000 | 120 | 75 | 2 | 135 | 251 | 161 | 280 | 5.92e-15 | 75.1 |
| MS.gene09131.t1 | AT1G10610 | 35.000 | 120 | 75 | 2 | 135 | 251 | 228 | 347 | 8.66e-15 | 75.1 |
| MS.gene09131.t1 | AT1G10610 | 35.000 | 120 | 75 | 2 | 135 | 251 | 258 | 377 | 1.04e-14 | 75.1 |
| MS.gene09131.t1 | AT5G46760 | 29.167 | 144 | 96 | 4 | 145 | 284 | 419 | 560 | 1.52e-14 | 74.7 |
| MS.gene09131.t1 | AT3G26744 | 38.053 | 113 | 59 | 1 | 96 | 197 | 251 | 363 | 1.42e-13 | 71.6 |
| MS.gene09131.t1 | AT3G26744 | 38.053 | 113 | 59 | 1 | 96 | 197 | 251 | 363 | 1.42e-13 | 71.6 |
| MS.gene09131.t1 | AT3G26744 | 38.053 | 113 | 59 | 1 | 96 | 197 | 251 | 363 | 1.42e-13 | 71.6 |
| MS.gene09131.t1 | AT1G12860 | 51.724 | 58 | 28 | 0 | 140 | 197 | 266 | 323 | 1.44e-13 | 71.6 |
| MS.gene09131.t1 | AT3G26744 | 38.053 | 113 | 59 | 1 | 96 | 197 | 251 | 363 | 1.49e-13 | 71.6 |
| MS.gene09131.t1 | AT1G32640 | 30.573 | 157 | 99 | 5 | 134 | 284 | 442 | 594 | 1.51e-13 | 71.6 |
| MS.gene09131.t1 | AT1G12860 | 51.724 | 58 | 28 | 0 | 140 | 197 | 266 | 323 | 1.52e-13 | 71.6 |
| MS.gene09131.t1 | AT4G21330 | 25.000 | 192 | 135 | 3 | 107 | 296 | 4 | 188 | 4.34e-13 | 67.8 |
| MS.gene09131.t1 | AT5G46830 | 28.662 | 157 | 94 | 4 | 145 | 295 | 347 | 491 | 1.14e-11 | 65.9 |
| MS.gene09131.t1 | AT5G10570 | 34.000 | 150 | 71 | 4 | 129 | 269 | 134 | 264 | 2.24e-11 | 64.3 |
Find 57 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTTCAGAATTCAAATT+TGG | 0.160318 | 4.1:+40938202 | MS.gene09131:CDS |
| AAATTTGGCAGGTTGATTTC+TGG | 0.184628 | 4.1:-40938562 | None:intergenic |
| AACCTCAGCCTTAAGCTTCT+TGG | 0.225200 | 4.1:-40937846 | None:intergenic |
| CAAAACTTTGATTCATTATA+AGG | 0.232350 | 4.1:-40937065 | None:intergenic |
| AATTGATCCTTGATGAGTTT+TGG | 0.235753 | 4.1:-40937897 | None:intergenic |
| ATCACCCATAGCTTTAAATT+TGG | 0.237169 | 4.1:-40938577 | None:intergenic |
| TGTTAAAATAGTATGCAATA+AGG | 0.282684 | 4.1:+40938127 | MS.gene09131:CDS |
| AAGTGTACCTTAGTTATATT+CGG | 0.298452 | 4.1:-40937411 | None:intergenic |
| GCTTTACGCATTGCGTTCTT+TGG | 0.305835 | 4.1:+40937386 | MS.gene09131:CDS |
| AAGCTTAAGGCTGAGGTTGC+AGG | 0.310327 | 4.1:+40937851 | MS.gene09131:CDS |
| TTGATGAATTGATCAAAGTT+TGG | 0.317687 | 4.1:-40936988 | None:intergenic |
| TTATCTATGTTGTGATCAAA+TGG | 0.384556 | 4.1:-40937120 | None:intergenic |
| ACCTGCCAAATTTAAAGCTA+TGG | 0.396521 | 4.1:+40938572 | MS.gene09131:CDS |
| TTAATGTTTGCAAGTGTCTC+TGG | 0.404175 | 4.1:-40936931 | None:intergenic |
| CGTAAAGCTTATCCTTCATT+CGG | 0.412112 | 4.1:-40937371 | None:intergenic |
| ATTATATGTATAGATGGATA+AGG | 0.414631 | 4.1:+40937772 | MS.gene09131:intron |
| GTTAAAATAGTATGCAATAA+GGG | 0.416472 | 4.1:+40938128 | MS.gene09131:CDS |
| ATGGATAAGGCTTCTATCAT+TGG | 0.423797 | 4.1:+40937785 | MS.gene09131:CDS |
| CCCATAGCTTTAAATTTGGC+AGG | 0.425488 | 4.1:-40938573 | None:intergenic |
| CAATTCATCAATTTGATTCG+TGG | 0.448543 | 4.1:+40937000 | MS.gene09131:CDS |
| AATTCATCAATTTGATTCGT+GGG | 0.449395 | 4.1:+40937001 | MS.gene09131:CDS |
| TTTGATCCTACTTCTTCACT+TGG | 0.449750 | 4.1:+40937159 | MS.gene09131:CDS |
| AAGGTATGAATTCAAAGCCT+TGG | 0.451801 | 4.1:-40938615 | None:intergenic |
| TGAAAATAGGTGAAAGACTC+TGG | 0.451976 | 4.1:+40938538 | MS.gene09131:intron |
| TAGTATGCAATAAGGGAGAA+AGG | 0.463194 | 4.1:+40938135 | MS.gene09131:CDS |
| AGTGTACCTTAGTTATATTC+GGG | 0.463592 | 4.1:-40937410 | None:intergenic |
| AATATGCAAGAAAATTGTCC+AGG | 0.466755 | 4.1:+40937961 | MS.gene09131:CDS |
| CTTTGGTTTCTGAGAGGAGG+AGG | 0.467532 | 4.1:+40937343 | MS.gene09131:CDS |
| AAATGATAGATCCAAGACTT+TGG | 0.473297 | 4.1:+40937326 | MS.gene09131:CDS |
| AATTTGGCCACTGTTTCTGA+TGG | 0.483700 | 4.1:+40938218 | MS.gene09131:CDS |
| CATCAATTTGATTCGTGGGG+AGG | 0.485954 | 4.1:+40937005 | MS.gene09131:CDS |
| TATCTATGTTGTGATCAAAT+GGG | 0.486497 | 4.1:-40937119 | None:intergenic |
| CCTCTCAGAAACCAAAGTCT+TGG | 0.490550 | 4.1:-40937337 | None:intergenic |
| TTGTGATCAAATGGGTTTGA+AGG | 0.490633 | 4.1:-40937111 | None:intergenic |
| ATTCAACTTACTAACAAAAG+TGG | 0.491348 | 4.1:+40937935 | MS.gene09131:CDS |
| ATCACAAGCCAAGAAGCTTA+AGG | 0.495865 | 4.1:+40937838 | MS.gene09131:CDS |
| TTTGGTCCCGAATATAACTA+AGG | 0.495980 | 4.1:+40937404 | MS.gene09131:CDS |
| TGTTGTTGTTGTTGCAGGAG+AGG | 0.508144 | 4.1:-40937250 | None:intergenic |
| ATGTGTCAAGCGTGAAAAGA+AGG | 0.518768 | 4.1:-40938634 | None:intergenic |
| ATGTTTCAAGTGGATGAAAG+AGG | 0.519776 | 4.1:+40938098 | MS.gene09131:CDS |
| AGTATGCAATAAGGGAGAAA+GGG | 0.525003 | 4.1:+40938136 | MS.gene09131:CDS |
| CCTGCCAAATTTAAAGCTAT+GGG | 0.525800 | 4.1:+40938573 | MS.gene09131:CDS |
| AAAGAACCAAGTGAAGAAGT+AGG | 0.527298 | 4.1:-40937165 | None:intergenic |
| GAGGAGGCGAAGCCGAATGA+AGG | 0.530731 | 4.1:+40937359 | MS.gene09131:CDS |
| TGTTTCAAGTGGATGAAAGA+GGG | 0.533128 | 4.1:+40938099 | MS.gene09131:CDS |
| ATCACCACTTGTAGTTGTTG+TGG | 0.544215 | 4.1:-40937286 | None:intergenic |
| AGCCAAGAAGCTTAAGGCTG+AGG | 0.549244 | 4.1:+40937844 | MS.gene09131:CDS |
| AGACTTTGGTTTCTGAGAGG+AGG | 0.567716 | 4.1:+40937340 | MS.gene09131:CDS |
| GTAGATTGATATGTTTCAAG+TGG | 0.578490 | 4.1:+40938088 | MS.gene09131:intron |
| GCAGTGTCCAAAACTCATCA+AGG | 0.579680 | 4.1:+40937890 | MS.gene09131:CDS |
| ATGGGTTTGAAGGAAATGAA+AGG | 0.592796 | 4.1:-40937101 | None:intergenic |
| CCAAGACTTTGGTTTCTGAG+AGG | 0.603254 | 4.1:+40937337 | MS.gene09131:CDS |
| GAATTAAGAGTAGAAAATGA+TGG | 0.612562 | 4.1:+40937216 | MS.gene09131:CDS |
| ATTACCACAACAACTACAAG+TGG | 0.612581 | 4.1:+40937282 | MS.gene09131:CDS |
| TAGAAAACCATCAGAAACAG+TGG | 0.631132 | 4.1:-40938225 | None:intergenic |
| ATTCATCAATTTGATTCGTG+GGG | 0.631333 | 4.1:+40937002 | MS.gene09131:CDS |
| ATGCAATAAGGGAGAAAGGG+TGG | 0.649433 | 4.1:+40938139 | MS.gene09131:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAATTATATGTATAGA+TGG | + | chr4.1:40937766-40937785 | MS.gene09131:intron | 10.0% |
| !! | ATATATTTAACCTTAAATAG+AGG | - | chr4.1:40938282-40938301 | None:intergenic | 15.0% |
| !! | TATATTTAACCTTAAATAGA+GGG | - | chr4.1:40938281-40938300 | None:intergenic | 15.0% |
| !! | ACTAAAAAAACCTAAATGTT+AGG | + | chr4.1:40938441-40938460 | MS.gene09131:intron | 20.0% |
| !! | ATGTAATTTCATAATACGTA+GGG | + | chr4.1:40938399-40938418 | MS.gene09131:intron | 20.0% |
| !! | ATTATATGTATAGATGGATA+AGG | + | chr4.1:40937772-40937791 | MS.gene09131:intron | 20.0% |
| !! | CAAAACTTTGATTCATTATA+AGG | - | chr4.1:40937068-40937087 | None:intergenic | 20.0% |
| !! | CAGATAATGAAATAGAATAA+TGG | - | chr4.1:40938487-40938506 | None:intergenic | 20.0% |
| !! | CTAAAAAAACCTAAATGTTA+GGG | + | chr4.1:40938442-40938461 | MS.gene09131:intron | 20.0% |
| !! | GTTAAAATAGTATGCAATAA+GGG | + | chr4.1:40938128-40938147 | MS.gene09131:CDS | 20.0% |
| !! | TGTTAAAATAGTATGCAATA+AGG | + | chr4.1:40938127-40938146 | MS.gene09131:CDS | 20.0% |
| !!! | AAACAAAATTACATGCTTTT+AGG | + | chr4.1:40938367-40938386 | MS.gene09131:intron | 20.0% |
| !!! | AGATTTTGAAGTATCTAAAA+TGG | - | chr4.1:40937522-40937541 | None:intergenic | 20.0% |
| !!! | CTTCAAAATCTTTTATATTG+TGG | + | chr4.1:40937531-40937550 | MS.gene09131:intron | 20.0% |
| !!! | TTTTTATTACCCTAACATTT+AGG | - | chr4.1:40938454-40938473 | None:intergenic | 20.0% |
| ! | AAGTGTACCTTAGTTATATT+CGG | - | chr4.1:40937414-40937433 | None:intergenic | 25.0% |
| ! | AATATATCATGACGTAATTG+TGG | - | chr4.1:40937557-40937576 | None:intergenic | 25.0% |
| ! | AGCAATCTTCTTCTTATAAA+CGG | - | chr4.1:40937623-40937642 | None:intergenic | 25.0% |
| ! | ATTCAACTTACTAACAAAAG+TGG | + | chr4.1:40937935-40937954 | MS.gene09131:CDS | 25.0% |
| ! | CAATGTTCAGAATTCAAATT+TGG | + | chr4.1:40938202-40938221 | MS.gene09131:CDS | 25.0% |
| ! | CATGTAATTTCATAATACGT+AGG | + | chr4.1:40938398-40938417 | MS.gene09131:intron | 25.0% |
| ! | CTATATGTTACTATCCAAAA+TGG | + | chr4.1:40937667-40937686 | MS.gene09131:intron | 25.0% |
| ! | GAATTAAGAGTAGAAAATGA+TGG | + | chr4.1:40937216-40937235 | MS.gene09131:CDS | 25.0% |
| ! | TATCTATGTTGTGATCAAAT+GGG | - | chr4.1:40937122-40937141 | None:intergenic | 25.0% |
| ! | TGATATTTATCAAACAAACC+TGG | - | chr4.1:40937982-40938001 | None:intergenic | 25.0% |
| ! | TTATCTATGTTGTGATCAAA+TGG | - | chr4.1:40937123-40937142 | None:intergenic | 25.0% |
| ! | TTGATGAATTGATCAAAGTT+TGG | - | chr4.1:40936991-40937010 | None:intergenic | 25.0% |
| !! | AATTCATCAATTTGATTCGT+GGG | + | chr4.1:40937001-40937020 | MS.gene09131:CDS | 25.0% |
| !! | ACAATGAATGTTAACCATTT+TGG | - | chr4.1:40937684-40937703 | None:intergenic | 25.0% |
| !! | ATCTAAAATGGTATCATAAC+TGG | - | chr4.1:40937510-40937529 | None:intergenic | 25.0% |
| !!! | GTAATTTTGTTTTGTAGAGA+CGG | - | chr4.1:40938359-40938378 | None:intergenic | 25.0% |
| !!! | TAGTAAGTTGAATCTTTTTG+TGG | - | chr4.1:40937928-40937947 | None:intergenic | 25.0% |
| AAATGATAGATCCAAGACTT+TGG | + | chr4.1:40937326-40937345 | MS.gene09131:CDS | 30.0% | |
| AATACGTAGGGACTAAAAAA+TGG | + | chr4.1:40938411-40938430 | MS.gene09131:intron | 30.0% | |
| AATATGCAAGAAAATTGTCC+AGG | + | chr4.1:40937961-40937980 | MS.gene09131:CDS | 30.0% | |
| AGCTATATTCCCTCTATTTA+AGG | + | chr4.1:40938269-40938288 | MS.gene09131:intron | 30.0% | |
| AGTGTACCTTAGTTATATTC+GGG | - | chr4.1:40937413-40937432 | None:intergenic | 30.0% | |
| CATGCTTATCATGTGAAAAT+AGG | + | chr4.1:40938525-40938544 | MS.gene09131:intron | 30.0% | |
| GTAGATTGATATGTTTCAAG+TGG | + | chr4.1:40938088-40938107 | MS.gene09131:intron | 30.0% | |
| GTTTGTAACATCTTTGAATG+TGG | + | chr4.1:40938059-40938078 | MS.gene09131:intron | 30.0% | |
| TATAACTAAGGTACACTTCT+TGG | + | chr4.1:40937416-40937435 | MS.gene09131:intron | 30.0% | |
| ! | AACATTTTGCCGCAATATAA+AGG | - | chr4.1:40937478-40937497 | None:intergenic | 30.0% |
| ! | AATTGATCCTTGATGAGTTT+TGG | - | chr4.1:40937900-40937919 | None:intergenic | 30.0% |
| ! | ATTCATCAATTTGATTCGTG+GGG | + | chr4.1:40937002-40937021 | MS.gene09131:CDS | 30.0% |
| ! | CAATTCATCAATTTGATTCG+TGG | + | chr4.1:40937000-40937019 | MS.gene09131:CDS | 30.0% |
| ! | TTTAAATTGTTGTTGCGTTG+CGG | + | chr4.1:40937440-40937459 | MS.gene09131:intron | 30.0% |
| !! | ATCACCCATAGCTTTAAATT+TGG | - | chr4.1:40938580-40938599 | None:intergenic | 30.0% |
| !! | GATCTATCATTTTTCGACTT+TGG | - | chr4.1:40937318-40937337 | None:intergenic | 30.0% |
| AAAGAACCAAGTGAAGAAGT+AGG | - | chr4.1:40937168-40937187 | None:intergenic | 35.0% | |
| AAGGTATGAATTCAAAGCCT+TGG | - | chr4.1:40938618-40938637 | None:intergenic | 35.0% | |
| AGTATGCAATAAGGGAGAAA+GGG | + | chr4.1:40938136-40938155 | MS.gene09131:CDS | 35.0% | |
| ATGGATAAGGCTTCTATCAT+TGG | + | chr4.1:40937785-40937804 | MS.gene09131:CDS | 35.0% | |
| ATGGGTTTGAAGGAAATGAA+AGG | - | chr4.1:40937104-40937123 | None:intergenic | 35.0% | |
| ATTACCACAACAACTACAAG+TGG | + | chr4.1:40937282-40937301 | MS.gene09131:CDS | 35.0% | |
| CACTGCAAACCTTTATATTG+CGG | + | chr4.1:40937466-40937485 | MS.gene09131:intron | 35.0% | |
| CGTAAAGCTTATCCTTCATT+CGG | - | chr4.1:40937374-40937393 | None:intergenic | 35.0% | |
| TAGAAAACCATCAGAAACAG+TGG | - | chr4.1:40938228-40938247 | None:intergenic | 35.0% | |
| TAGTATGCAATAAGGGAGAA+AGG | + | chr4.1:40938135-40938154 | MS.gene09131:CDS | 35.0% | |
| TGAAAATAGGTGAAAGACTC+TGG | + | chr4.1:40938538-40938557 | MS.gene09131:intron | 35.0% | |
| TTAATGTTTGCAAGTGTCTC+TGG | - | chr4.1:40936934-40936953 | None:intergenic | 35.0% | |
| TTTGATCCTACTTCTTCACT+TGG | + | chr4.1:40937159-40937178 | MS.gene09131:CDS | 35.0% | |
| TTTGGTCCCGAATATAACTA+AGG | + | chr4.1:40937404-40937423 | MS.gene09131:CDS | 35.0% | |
| ! | ACCTGCCAAATTTAAAGCTA+TGG | + | chr4.1:40938572-40938591 | MS.gene09131:CDS | 35.0% |
| ! | ATCAGTGCTTTTCTAAACCA+AGG | + | chr4.1:40938598-40938617 | MS.gene09131:CDS | 35.0% |
| ! | ATGTTTCAAGTGGATGAAAG+AGG | + | chr4.1:40938098-40938117 | MS.gene09131:CDS | 35.0% |
| ! | CCTGCCAAATTTAAAGCTAT+GGG | + | chr4.1:40938573-40938592 | MS.gene09131:CDS | 35.0% |
| ! | TGTTTCAAGTGGATGAAAGA+GGG | + | chr4.1:40938099-40938118 | MS.gene09131:CDS | 35.0% |
| ! | TTGTGATCAAATGGGTTTGA+AGG | - | chr4.1:40937114-40937133 | None:intergenic | 35.0% |
| !! | AAATTTGGCAGGTTGATTTC+TGG | - | chr4.1:40938565-40938584 | None:intergenic | 35.0% |
| !!! | GGTTCTTTCTCTTGTTTTGA+TGG | + | chr4.1:40937180-40937199 | MS.gene09131:CDS | 35.0% |
| !!! | TGTTTTGATGGAGAAGCTAA+GGG | + | chr4.1:40937192-40937211 | MS.gene09131:CDS | 35.0% |
| !!! | TTGTTTTGATGGAGAAGCTA+AGG | + | chr4.1:40937191-40937210 | MS.gene09131:CDS | 35.0% |
| ATCACAAGCCAAGAAGCTTA+AGG | + | chr4.1:40937838-40937857 | MS.gene09131:CDS | 40.0% | |
| ATCACCACTTGTAGTTGTTG+TGG | - | chr4.1:40937289-40937308 | None:intergenic | 40.0% | |
| GTAACATATAGCCTGCATAG+TGG | - | chr4.1:40937658-40937677 | None:intergenic | 40.0% | |
| ! | GTTGTTGTTGTTGTTGTTGC+AGG | - | chr4.1:40937258-40937277 | None:intergenic | 40.0% |
| ! | GTTTTGTAGAGACGGAAAAG+TGG | - | chr4.1:40938351-40938370 | None:intergenic | 40.0% |
| ! | TTTTGATGGAGAAGCTAAGG+GGG | + | chr4.1:40937194-40937213 | MS.gene09131:CDS | 40.0% |
| !! | AATTTGGCCACTGTTTCTGA+TGG | + | chr4.1:40938218-40938237 | MS.gene09131:CDS | 40.0% |
| !! | CCCATAGCTTTAAATTTGGC+AGG | - | chr4.1:40938576-40938595 | None:intergenic | 40.0% |
| !! | GTTTTGATGGAGAAGCTAAG+GGG | + | chr4.1:40937193-40937212 | MS.gene09131:CDS | 40.0% |
| AACCTCAGCCTTAAGCTTCT+TGG | - | chr4.1:40937849-40937868 | None:intergenic | 45.0% | |
| ATGCAATAAGGGAGAAAGGG+TGG | + | chr4.1:40938139-40938158 | MS.gene09131:CDS | 45.0% | |
| CCTCTCAGAAACCAAAGTCT+TGG | - | chr4.1:40937340-40937359 | None:intergenic | 45.0% | |
| CGCACTTATAACCACTATGC+AGG | + | chr4.1:40937644-40937663 | MS.gene09131:intron | 45.0% | |
| GCAGTGTCCAAAACTCATCA+AGG | + | chr4.1:40937890-40937909 | MS.gene09131:CDS | 45.0% | |
| GCTTTACGCATTGCGTTCTT+TGG | + | chr4.1:40937386-40937405 | MS.gene09131:CDS | 45.0% | |
| ! | AGACTTTGGTTTCTGAGAGG+AGG | + | chr4.1:40937340-40937359 | MS.gene09131:CDS | 45.0% |
| ! | CATCAATTTGATTCGTGGGG+AGG | + | chr4.1:40937005-40937024 | MS.gene09131:CDS | 45.0% |
| ! | CCAAGACTTTGGTTTCTGAG+AGG | + | chr4.1:40937337-40937356 | MS.gene09131:CDS | 45.0% |
| ! | TGTTGTTGTTGTTGCAGGAG+AGG | - | chr4.1:40937253-40937272 | None:intergenic | 45.0% |
| AAGCTTAAGGCTGAGGTTGC+AGG | + | chr4.1:40937851-40937870 | MS.gene09131:CDS | 50.0% | |
| AGCCAAGAAGCTTAAGGCTG+AGG | + | chr4.1:40937844-40937863 | MS.gene09131:CDS | 50.0% | |
| ! | CTTTGGTTTCTGAGAGGAGG+AGG | + | chr4.1:40937343-40937362 | MS.gene09131:CDS | 50.0% |
| GAGGAGGCGAAGCCGAATGA+AGG | + | chr4.1:40937359-40937378 | MS.gene09131:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 40936919 | 40938651 | 40936919 | ID=MS.gene09131 |
| chr4.1 | mRNA | 40936919 | 40938651 | 40936919 | ID=MS.gene09131.t1;Parent=MS.gene09131 |
| chr4.1 | exon | 40936919 | 40937425 | 40936919 | ID=MS.gene09131.t1.exon1;Parent=MS.gene09131.t1 |
| chr4.1 | CDS | 40936919 | 40937425 | 40936919 | ID=cds.MS.gene09131.t1;Parent=MS.gene09131.t1 |
| chr4.1 | exon | 40937785 | 40937982 | 40937785 | ID=MS.gene09131.t1.exon2;Parent=MS.gene09131.t1 |
| chr4.1 | CDS | 40937785 | 40937982 | 40937785 | ID=cds.MS.gene09131.t1;Parent=MS.gene09131.t1 |
| chr4.1 | exon | 40938092 | 40938265 | 40938092 | ID=MS.gene09131.t1.exon3;Parent=MS.gene09131.t1 |
| chr4.1 | CDS | 40938092 | 40938265 | 40938092 | ID=cds.MS.gene09131.t1;Parent=MS.gene09131.t1 |
| chr4.1 | exon | 40938547 | 40938651 | 40938547 | ID=MS.gene09131.t1.exon4;Parent=MS.gene09131.t1 |
| chr4.1 | CDS | 40938547 | 40938651 | 40938547 | ID=cds.MS.gene09131.t1;Parent=MS.gene09131.t1 |
| Gene Sequence |
| Protein sequence |
