AlfalfaGEDB | MS.gene09131

M. sativa cultivar XinJiangDaYe / MS.gene09131

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09131.t1	XP_003606331.2	95.4	327	13	1	1	327	11	335	7.20E-145	523.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09131.t1	Q0V7X4	51.9	324	136	9	8	325	8	317	7.7e-55	215.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09131.t1	G7JN98	95.4	327	13	1	1	327	11	335	5.2e-145	523.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene09131.t1	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09131.t1	MTR_4g057270	93.578	327	19	1	1	327	11	335	0.0	599
MS.gene09131.t1	MTR_2g084280	65.109	321	88	10	13	325	9	313	3.10e-131	376
MS.gene09131.t1	MTR_8g064700	32.065	184	118	5	132	311	235	415	1.23e-19	89.4
MS.gene09131.t1	MTR_3g030700	28.829	222	150	5	99	314	153	372	2.92e-18	85.1
MS.gene09131.t1	MTR_3g104100	33.133	166	92	6	140	294	194	351	8.54e-18	83.6
MS.gene09131.t1	MTR_2g038040	31.481	162	98	2	140	289	51	211	2.45e-17	80.5
MS.gene09131.t1	MTR_8g067280	31.429	175	104	5	134	294	452	624	1.14e-16	81.3
MS.gene09131.t1	MTR_1g112680	31.034	145	73	3	135	252	311	455	4.43e-16	79.3
MS.gene09131.t1	MTR_5g030430	31.126	151	91	4	145	284	497	645	2.93e-15	77.0
MS.gene09131.t1	MTR_2g081040	32.738	168	90	7	140	294	176	333	3.09e-15	75.9

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09131.t1	AT2G28160	51.515	330	128	11	8	325	8	317	4.68e-95	285
MS.gene09131.t1	AT2G28160	50.617	324	128	11	8	319	8	311	1.16e-90	273
MS.gene09131.t1	AT5G57150	40.127	157	84	4	140	288	53	207	2.40e-24	99.4
MS.gene09131.t1	AT5G57150	40.127	157	84	4	140	288	54	208	2.42e-24	99.4
MS.gene09131.t1	AT5G57150	40.127	157	84	4	140	288	54	208	2.54e-24	99.0
MS.gene09131.t1	AT5G57150	40.127	157	84	4	140	288	53	207	3.78e-24	99.4
MS.gene09131.t1	AT5G57150	40.127	157	84	4	140	288	54	208	1.22e-23	98.2
MS.gene09131.t1	AT2G16910	35.260	173	86	3	139	286	312	483	1.09e-21	96.3
MS.gene09131.t1	AT4G29930	35.664	143	83	3	140	281	53	187	1.82e-20	89.0
MS.gene09131.t1	AT4G29930	34.395	157	89	3	140	294	53	197	4.64e-20	87.8

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

Find 57 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACCAAGTGAAGAAGT+AGG	0.527298	4.1:-40937165	None:intergenic
AAATGATAGATCCAAGACTT+TGG	0.473297	4.1:+40937326	MS.gene09131:CDS
AAATTTGGCAGGTTGATTTC+TGG	0.184628	4.1:-40938562	None:intergenic
AACCTCAGCCTTAAGCTTCT+TGG	0.225200	4.1:-40937846	None:intergenic
AAGCTTAAGGCTGAGGTTGC+AGG	0.310327	4.1:+40937851	MS.gene09131:CDS
AAGGTATGAATTCAAAGCCT+TGG	0.451801	4.1:-40938615	None:intergenic
AAGTGTACCTTAGTTATATT+CGG	0.298452	4.1:-40937411	None:intergenic
AATATGCAAGAAAATTGTCC+AGG	0.466755	4.1:+40937961	MS.gene09131:CDS
AATTCATCAATTTGATTCGT+GGG	0.449395	4.1:+40937001	MS.gene09131:CDS
AATTGATCCTTGATGAGTTT+TGG	0.235753	4.1:-40937897	None:intergenic

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGATAGATCCAAGACTT+TGG	+	chr4.1:40937326-40937345	MS.gene09131:CDS	30.0%
AATACGTAGGGACTAAAAAA+TGG	+	chr4.1:40938411-40938430	MS.gene09131:intron	30.0%
AATATGCAAGAAAATTGTCC+AGG	+	chr4.1:40937961-40937980	MS.gene09131:CDS	30.0%
AGCTATATTCCCTCTATTTA+AGG	+	chr4.1:40938269-40938288	MS.gene09131:intron	30.0%
AGTGTACCTTAGTTATATTC+GGG	-	chr4.1:40937413-40937432	None:intergenic	30.0%
CATGCTTATCATGTGAAAAT+AGG	+	chr4.1:40938525-40938544	MS.gene09131:intron	30.0%
GTAGATTGATATGTTTCAAG+TGG	+	chr4.1:40938088-40938107	MS.gene09131:intron	30.0%
GTTTGTAACATCTTTGAATG+TGG	+	chr4.1:40938059-40938078	MS.gene09131:intron	30.0%
TATAACTAAGGTACACTTCT+TGG	+	chr4.1:40937416-40937435	MS.gene09131:intron	30.0%
AAAGAACCAAGTGAAGAAGT+AGG	-	chr4.1:40937168-40937187	None:intergenic	35.0%

Showing 1 to 10 of 95 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	40936919	40938651	40936919	ID=MS.gene09131
chr4.1	mRNA	40936919	40938651	40936919	ID=MS.gene09131.t1;Parent=MS.gene09131
chr4.1	exon	40936919	40937425	40936919	ID=MS.gene09131.t1.exon1;Parent=MS.gene09131.t1
chr4.1	CDS	40936919	40937425	40936919	ID=cds.MS.gene09131.t1;Parent=MS.gene09131.t1
chr4.1	exon	40937785	40937982	40937785	ID=MS.gene09131.t1.exon2;Parent=MS.gene09131.t1
chr4.1	CDS	40937785	40937982	40937785	ID=cds.MS.gene09131.t1;Parent=MS.gene09131.t1
chr4.1	exon	40938092	40938265	40938092	ID=MS.gene09131.t1.exon3;Parent=MS.gene09131.t1
chr4.1	CDS	40938092	40938265	40938092	ID=cds.MS.gene09131.t1;Parent=MS.gene09131.t1
chr4.1	exon	40938547	40938651	40938547	ID=MS.gene09131.t1.exon4;Parent=MS.gene09131.t1
chr4.1	CDS	40938547	40938651	40938547	ID=cds.MS.gene09131.t1;Parent=MS.gene09131.t1

Gene Sequence

>MS.gene09131

ATGGATATTTATCCAGAGACACTTGCAAACATTAACAATGACTATGAGTTACATGATTTCATTGATGATCCAAACTTTGATCAATTCATCAATTTGATTCGTGGGGAGGAAAATGAAGATACTACTATTTGTAACTTCAATTCTGACCTTATAATGAATCAAAGTTTTGTTGATAACTCACTCCTTTCATTTCCTTCAAACCCATTTGATCACAACATAGATAATACTATTACTGCTGCTTTTGATCCTACTTCTTCACTTGGTTCTTTCTCTTGTTTTGATGGAGAAGCTAAGGGGGAATTAAGAGTAGAAAATGATGGTGATAATTACTCCTCTCCTGCAACAACAACAACAACAACTAGCATTACCACAACAACTACAAGTGGTGATACTAAGCCAAAGTCGAAAAATGATAGATCCAAGACTTTGGTTTCTGAGAGGAGGAGGCGAAGCCGAATGAAGGATAAGCTTTACGCATTGCGTTCTTTGGTCCCGAATATAACTAAGGTACACTTCTTGGTTTTAAATTGTTGTTGCGTTGCGGTTACACTGCAAACCTTTATATTGCGGCAAAATGTTCTCAAAATTCCAGTTATGATACCATTTTAGATACTTCAAAATCTTTTATATTGTGGCCACAATTACGTCATGATATATTGAATATCATAAAATTTTGTCGTGTCTAACTCAATCTTAAAAATCCGTTTATAAGAAGAAGATTGCTTCGCACTTATAACCACTATGCAGGCTATATGTTACTATCCAAAATGGTTAACATTCATTGTTGATTAGACAAGCATAAGTGTCTTACTATAAAAAAAATATCAATTATATATAATTGATATTTTATTTAATTATATGTATAGATGGATAAGGCTTCTATCATTGGAGATGCTGTTTCATATATGCATGAACTTCAATCACAAGCCAAGAAGCTTAAGGCTGAGGTTGCAGGACTTGAAGCATCATTAGCAGTGTCCAAAACTCATCAAGGATCAATTGAAAACCACAAAAAGATTCAACTTACTAACAAAAGTGGTTCAATATGCAAGAAAATTGTCCAGGTTTGTTTGATAAATATCAAATTAGCTCAATAAAAAGTTTTATTTAGTTAATTAGTCTCTATGTAAGATATTTGTAGTTTGTAACATCTTTGAATGTGGCTTTGTGTAGATTGATATGTTTCAAGTGGATGAAAGAGGGTTTTATGTTAAAATAGTATGCAATAAGGGAGAAAGGGTGGCTGCTTCATTGTACAAGTCTCTTGAATCTTTGAAAGATTTCAATGTTCAGAATTCAAATTTGGCCACTGTTTCTGATGGTTTTCTATTTACATTTTCATTGAATGTAAGCTATATTCCCTCTATTTAAGGTTAAATATATTTCTATTCGTCATAATTATCTTAGATTTTGTTTTTAGTCTCTGTATCCACTTTTCCGTCTCTACAAAACAAAATTACATGCTTTTAGGACTAAAAACATGTAATTTCATAATACGTAGGGACTAAAAAATGGATCTGAGACTAAAAAAACCTAAATGTTAGGGTAATAAAAATATATTTAATCCATTATTCTATTTCATTATCTGTTTACTGATATAGTAATTCATGCTTATCATGTGAAAATAGGTGAAAGACTCTGGACCAGAAATCAACCTGCCAAATTTAAAGCTATGGGTGATCAGTGCTTTTCTAAACCAAGGCTTTGAATTCATACCTTCTTTTCACGCTTGA

Protein sequence

>MS.gene09131.t1

MDIYPETLANINNDYELHDFIDDPNFDQFINLIRGEENEDTTICNFNSDLIMNQSFVDNSLLSFPSNPFDHNIDNTITAAFDPTSSLGSFSCFDGEAKGELRVENDGDNYSSPATTTTTTSITTTTTSGDTKPKSKNDRSKTLVSERRRRSRMKDKLYALRSLVPNITKMDKASIIGDAVSYMHELQSQAKKLKAEVAGLEASLAVSKTHQGSIENHKKIQLTNKSGSICKKIVQIDMFQVDERGFYVKIVCNKGERVAASLYKSLESLKDFNVQNSNLATVSDGFLFTFSLNVKDSGPEINLPNLKLWVISAFLNQGFEFIPSFHA