Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09135.t1 | XP_003606327.1 | 81.6 | 294 | 53 | 1 | 1 | 294 | 1 | 293 | 4.50E-114 | 421 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09135.t1 | Q681X4 | 46.2 | 208 | 68 | 5 | 104 | 294 | 106 | 286 | 6.5e-37 | 156.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09135.t1 | G7JN94 | 81.6 | 294 | 53 | 1 | 1 | 294 | 1 | 293 | 3.3e-114 | 421.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09135.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09135.t1 | MTR_4g057230 | 91.837 | 294 | 23 | 1 | 1 | 294 | 1 | 293 | 9.61e-168 | 467 |
| MS.gene09135.t1 | MTR_2g084315 | 43.987 | 316 | 102 | 10 | 17 | 294 | 15 | 293 | 3.02e-65 | 206 |
| MS.gene09135.t1 | MTR_1g090703 | 37.666 | 377 | 115 | 14 | 8 | 294 | 9 | 355 | 1.18e-59 | 194 |
| MS.gene09135.t1 | MTR_1g062780 | 36.335 | 322 | 146 | 13 | 5 | 294 | 3 | 297 | 3.29e-49 | 165 |
| MS.gene09135.t1 | MTR_1g067650 | 39.286 | 168 | 40 | 5 | 113 | 268 | 39 | 156 | 1.67e-25 | 100 |
| MS.gene09135.t1 | MTR_1g067640 | 39.286 | 168 | 40 | 5 | 113 | 268 | 38 | 155 | 1.81e-25 | 100 |
| MS.gene09135.t1 | MTR_7g100100 | 37.267 | 161 | 47 | 5 | 113 | 266 | 34 | 147 | 8.13e-21 | 87.4 |
| MS.gene09135.t1 | MTR_1g077730 | 40.123 | 162 | 75 | 7 | 112 | 262 | 43 | 193 | 1.14e-19 | 85.1 |
| MS.gene09135.t1 | MTR_4g028610 | 38.372 | 172 | 69 | 7 | 112 | 263 | 226 | 380 | 3.40e-19 | 87.8 |
| MS.gene09135.t1 | MTR_4g109340 | 36.709 | 158 | 81 | 4 | 113 | 266 | 348 | 490 | 1.17e-18 | 86.3 |
| MS.gene09135.t1 | MTR_0160s0030 | 35.256 | 156 | 45 | 4 | 113 | 266 | 240 | 341 | 2.47e-18 | 84.3 |
| MS.gene09135.t1 | MTR_1g077700 | 34.239 | 184 | 77 | 6 | 89 | 262 | 36 | 185 | 3.27e-16 | 75.5 |
| MS.gene09135.t1 | MTR_7g023560 | 35.252 | 139 | 63 | 4 | 66 | 204 | 12 | 123 | 2.84e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09135.t1 | AT2G28200 | 39.875 | 321 | 105 | 9 | 17 | 294 | 11 | 286 | 1.41e-55 | 181 |
| MS.gene09135.t1 | AT5G03510 | 38.538 | 301 | 133 | 10 | 21 | 294 | 17 | 292 | 7.10e-50 | 167 |
| MS.gene09135.t1 | AT5G04390 | 32.718 | 379 | 134 | 12 | 14 | 294 | 7 | 362 | 8.56e-46 | 158 |
| MS.gene09135.t1 | AT3G10470 | 32.000 | 325 | 103 | 10 | 60 | 294 | 102 | 398 | 4.42e-38 | 139 |
| MS.gene09135.t1 | AT2G37430 | 34.322 | 236 | 74 | 8 | 54 | 277 | 1 | 167 | 3.91e-27 | 104 |
| MS.gene09135.t1 | AT3G53600 | 33.742 | 163 | 46 | 4 | 113 | 267 | 49 | 157 | 1.95e-20 | 86.7 |
| MS.gene09135.t1 | AT3G60580 | 33.491 | 212 | 86 | 6 | 59 | 266 | 120 | 280 | 4.15e-18 | 82.8 |
| MS.gene09135.t1 | AT2G28710 | 30.131 | 229 | 70 | 8 | 57 | 274 | 5 | 154 | 4.39e-18 | 79.7 |
| MS.gene09135.t1 | AT3G19580 | 31.250 | 176 | 72 | 6 | 56 | 231 | 61 | 187 | 1.02e-15 | 75.9 |
| MS.gene09135.t1 | AT3G19580 | 31.250 | 176 | 72 | 6 | 56 | 231 | 61 | 187 | 1.02e-15 | 75.9 |
| MS.gene09135.t1 | AT5G67450 | 28.571 | 210 | 93 | 5 | 22 | 231 | 34 | 186 | 2.27e-14 | 71.6 |
| MS.gene09135.t1 | AT5G56200 | 32.824 | 131 | 60 | 3 | 115 | 244 | 344 | 447 | 3.95e-12 | 66.6 |
| MS.gene09135.t1 | AT1G02040 | 44.304 | 79 | 36 | 3 | 61 | 139 | 106 | 176 | 8.29e-11 | 62.4 |
Find 81 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAACAAAGTATCAGTTTC+CGG | 0.317665 | 4.1:+41033630 | MS.gene09135:CDS |
| GGTTTGAAAGCAGCTATTAA+TGG | 0.332072 | 4.1:+41033412 | MS.gene09135:CDS |
| TGATGATGAAGAAGAAAATT+TGG | 0.335616 | 4.1:+41033003 | MS.gene09135:CDS |
| GATGGCTGCTGCTCCGGCTT+TGG | 0.337938 | 4.1:+41033672 | MS.gene09135:CDS |
| GGCTGCTGCTCCGGCTTTGG+TGG | 0.355185 | 4.1:+41033675 | MS.gene09135:CDS |
| CGCCGCGGCTGTCGCGGCCC+CGG | 0.362249 | 4.1:+41033537 | MS.gene09135:CDS |
| GAAACTGATACTTTGTTTCC+CGG | 0.368555 | 4.1:-41033627 | None:intergenic |
| TTTGGTGGGTTGCCATTATT+AGG | 0.369907 | 4.1:+41033690 | MS.gene09135:CDS |
| ATCCCACCATTGCCTAATAA+TGG | 0.373982 | 4.1:-41033702 | None:intergenic |
| TGTTTCCCGGAGATCCTCTT+CGG | 0.377948 | 4.1:-41033614 | None:intergenic |
| ATTCATGAGTGTTCCATTTG+TGG | 0.380454 | 4.1:+41033448 | MS.gene09135:CDS |
| ACAATTGGATCTTAACCTTC+CGG | 0.380863 | 4.1:+41033588 | MS.gene09135:CDS |
| GTTTGAAAGCAGCTATTAAT+GGG | 0.383602 | 4.1:+41033413 | MS.gene09135:CDS |
| CGTGAACTCTGAACCACAAA+TGG | 0.399350 | 4.1:-41033461 | None:intergenic |
| TTCAAGCTTTGGGTGGTCAC+AGG | 0.400243 | 4.1:+41033200 | MS.gene09135:CDS |
| GGCCGAGGCTGCTGCGGCAG+TGG | 0.401971 | 4.1:-41033274 | None:intergenic |
| TGAGATGGAAGAGTTTGTTA+TGG | 0.402618 | 4.1:+41032823 | None:intergenic |
| CTTGGCCTAACTCCTTCATC+CGG | 0.411052 | 4.1:-41033556 | None:intergenic |
| GCTGTCGCGGCCCCGGATGA+AGG | 0.431837 | 4.1:+41033544 | MS.gene09135:CDS |
| TCCTTGTGGTGTTGTTGCTA+TGG | 0.433985 | 4.1:+41032928 | MS.gene09135:CDS |
| GTGTCCACCCAATGCTTGTC+CGG | 0.434536 | 4.1:-41033485 | None:intergenic |
| GTTTCCCGGAGATCCTCTTC+GGG | 0.436914 | 4.1:-41033613 | None:intergenic |
| GGCAAACGCCGCGGCTGTCG+CGG | 0.437593 | 4.1:+41033531 | MS.gene09135:CDS |
| TCCAATTGTAAAATATTCCT+TGG | 0.441862 | 4.1:-41033574 | None:intergenic |
| TGATGAGAATAAAAGGGAAA+AGG | 0.444034 | 4.1:+41033084 | MS.gene09135:CDS |
| AATGGTGATGGCTGCTGCTC+CGG | 0.446387 | 4.1:+41033666 | MS.gene09135:CDS |
| CGGCCCCGGATGAAGGAGTT+AGG | 0.454771 | 4.1:+41033551 | MS.gene09135:CDS |
| GATGAGAATAAAAGGGAAAA+GGG | 0.455980 | 4.1:+41033085 | MS.gene09135:CDS |
| CACCACTGCCGCAGCAGCCT+CGG | 0.457441 | 4.1:+41033272 | MS.gene09135:CDS |
| CGGAGATCCTCTTCGGGCGC+CGG | 0.459805 | 4.1:-41033607 | None:intergenic |
| ATCCGGGGCCGCGACAGCCG+CGG | 0.468884 | 4.1:-41033539 | None:intergenic |
| GGCTGCTGCGGCAGTGGTGA+TGG | 0.470904 | 4.1:-41033268 | None:intergenic |
| GTTTGTTATGGAGGAAAAGA+TGG | 0.472339 | 4.1:+41032835 | MS.gene09135:CDS |
| CGGCGCCCGAAGAGGATCTC+CGG | 0.472384 | 4.1:+41033608 | MS.gene09135:CDS |
| AATGGAACACTCATGAATCT+TGG | 0.473930 | 4.1:-41033443 | None:intergenic |
| CCACCCAAAGCTTGAAAAGA+AGG | 0.473990 | 4.1:-41033193 | None:intergenic |
| TTTCAAATGGGGAATCATCA+TGG | 0.481342 | 4.1:+41033391 | MS.gene09135:CDS |
| TTGGCCTAACTCCTTCATCC+GGG | 0.483136 | 4.1:-41033555 | None:intergenic |
| GATGGAAGAGTTTGTTATGG+AGG | 0.484063 | 4.1:+41032826 | None:intergenic |
| GGTGAGACTAGCACAAAACT+TGG | 0.487527 | 4.1:+41033130 | MS.gene09135:CDS |
| TTCACGTCCGGACAAGCATT+GGG | 0.492037 | 4.1:+41033478 | MS.gene09135:CDS |
| CTTGAAAAGAAGGAAAAGTT+CGG | 0.492437 | 4.1:-41033183 | None:intergenic |
| GCTGCTGCTCCGGCTTTGGT+GGG | 0.498866 | 4.1:+41033676 | MS.gene09135:CDS |
| AAAAGGGAAAAGGGTAGTCA+TGG | 0.501331 | 4.1:+41033094 | MS.gene09135:CDS |
| GTGGACACATGAGGAGGCAT+AGG | 0.504351 | 4.1:+41033500 | MS.gene09135:CDS |
| GACTGTGGCCGAGGCTGCTG+CGG | 0.506272 | 4.1:-41033280 | None:intergenic |
| TGTTTGATTCTTCTAGCTCA+AGG | 0.518149 | 4.1:+41033031 | MS.gene09135:CDS |
| TAATGGCAACCCACCAAAGC+CGG | 0.522225 | 4.1:-41033685 | None:intergenic |
| AAAGAAACCATCGGCCCACC+AGG | 0.527272 | 4.1:-41033370 | None:intergenic |
| GGCGCCCGAAGAGGATCTCC+GGG | 0.528337 | 4.1:+41033609 | MS.gene09135:CDS |
| GTTCACGTCCGGACAAGCAT+TGG | 0.531044 | 4.1:+41033477 | MS.gene09135:CDS |
| TGTGGTTCAGAGTTCACGTC+CGG | 0.531850 | 4.1:+41033466 | MS.gene09135:CDS |
| GATCCTCTTCGGGCGCCGGA+AGG | 0.534882 | 4.1:-41033603 | None:intergenic |
| TCAAGCTTTGGGTGGTCACA+GGG | 0.535579 | 4.1:+41033201 | MS.gene09135:CDS |
| AAAGCCTAAAATCATGGTTG+AGG | 0.549688 | 4.1:+41033234 | MS.gene09135:CDS |
| TGGACACATGAGGAGGCATA+GGG | 0.553507 | 4.1:+41033501 | MS.gene09135:CDS |
| ATTCATCACTATTCGCAACC+AGG | 0.555512 | 4.1:-41033330 | None:intergenic |
| TGAGAAACCTGGTGGGCCGA+TGG | 0.557169 | 4.1:+41033363 | MS.gene09135:CDS |
| TGATTCTCAATCAGTTAACC+TGG | 0.563461 | 4.1:+41033312 | MS.gene09135:CDS |
| CCCATTTGAAAAGAAACCAT+CGG | 0.580230 | 4.1:-41033379 | None:intergenic |
| GAGGAGGCATAGGGCATCTG+TGG | 0.584892 | 4.1:+41033510 | MS.gene09135:CDS |
| TGTGATGAAGACTGTGGCCG+AGG | 0.593635 | 4.1:-41033289 | None:intergenic |
| AGCAGCTATTAATGGGAACA+AGG | 0.601134 | 4.1:+41033420 | MS.gene09135:CDS |
| TAACCTTCCGGCGCCCGAAG+AGG | 0.605677 | 4.1:+41033600 | MS.gene09135:CDS |
| TGGCCTAACTCCTTCATCCG+GGG | 0.608914 | 4.1:-41033554 | None:intergenic |
| TGCTGCGGCAGTGGTGATGG+TGG | 0.609561 | 4.1:-41033265 | None:intergenic |
| CGGATGAAGGAGTTAGGCCA+AGG | 0.613650 | 4.1:+41033557 | MS.gene09135:CDS |
| TTTGAAGAAGCTGAGAAACC+TGG | 0.625192 | 4.1:+41033352 | MS.gene09135:CDS |
| GATGCAACTCACATAGCCAA+AGG | 0.631447 | 4.1:+41032875 | MS.gene09135:CDS |
| ACGTCCGGACAAGCATTGGG+TGG | 0.632969 | 4.1:+41033481 | MS.gene09135:CDS |
| AAGCATTGGGTGGACACATG+AGG | 0.635825 | 4.1:+41033491 | MS.gene09135:CDS |
| GGCATCTGTGGCAAACGCCG+CGG | 0.643037 | 4.1:+41033522 | MS.gene09135:CDS |
| CATTGGGTGGACACATGAGG+AGG | 0.644735 | 4.1:+41033494 | MS.gene09135:CDS |
| GCCATAGCAACAACACCACA+AGG | 0.645146 | 4.1:-41032929 | None:intergenic |
| TTGATTCTTCTAGCTCAAGG+TGG | 0.647646 | 4.1:+41033034 | MS.gene09135:CDS |
| GAAGAAGCTGAGAAACCTGG+TGG | 0.669965 | 4.1:+41033355 | MS.gene09135:CDS |
| CCAAAGGAAAACGTACCAAG+AGG | 0.677248 | 4.1:+41032891 | MS.gene09135:CDS |
| GGTGGAAATCATAAGCAACA+TGG | 0.700755 | 4.1:+41033052 | MS.gene09135:CDS |
| AAGAAGCTGAGAAACCTGGT+GGG | 0.700973 | 4.1:+41033356 | MS.gene09135:CDS |
| GGAAATCATAAGCAACATGG+TGG | 0.725682 | 4.1:+41033055 | MS.gene09135:CDS |
| GAATCATGTGATGAAGACTG+TGG | 0.796667 | 4.1:-41033295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTCATGGAAATAAAAAAAT+TGG | + | chr4.1:41033109-41033128 | MS.gene09135:CDS | 20.0% |
| !!! | TTTTGTTGATGAGAATAAAA+GGG | + | chr4.1:41033078-41033097 | MS.gene09135:CDS | 20.0% |
| ! | TCCAATTGTAAAATATTCCT+TGG | - | chr4.1:41033577-41033596 | None:intergenic | 25.0% |
| !! | TGATGATGAAGAAGAAAATT+TGG | + | chr4.1:41033003-41033022 | MS.gene09135:CDS | 25.0% |
| !!! | GTTTTGTTGATGAGAATAAA+AGG | + | chr4.1:41033077-41033096 | MS.gene09135:CDS | 25.0% |
| AGACAAAAATCTTAACCTCT+TGG | - | chr4.1:41032909-41032928 | None:intergenic | 30.0% | |
| CTTGAAAAGAAGGAAAAGTT+CGG | - | chr4.1:41033186-41033205 | None:intergenic | 30.0% | |
| GATGAGAATAAAAGGGAAAA+GGG | + | chr4.1:41033085-41033104 | MS.gene09135:CDS | 30.0% | |
| GTTTGAAAGCAGCTATTAAT+GGG | + | chr4.1:41033413-41033432 | MS.gene09135:CDS | 30.0% | |
| TACACAAAAATCAATGGTGA+TGG | + | chr4.1:41033654-41033673 | MS.gene09135:CDS | 30.0% | |
| TCACAAAAAGCCTAAAATCA+TGG | + | chr4.1:41033228-41033247 | MS.gene09135:CDS | 30.0% | |
| TGATGAGAATAAAAGGGAAA+AGG | + | chr4.1:41033084-41033103 | MS.gene09135:CDS | 30.0% | |
| ! | GCCAAGGAATATTTTACAAT+TGG | + | chr4.1:41033573-41033592 | MS.gene09135:CDS | 30.0% |
| ! | TTAAGATTTTTGTCTCCTTG+TGG | + | chr4.1:41032914-41032933 | MS.gene09135:CDS | 30.0% |
| !! | TTTCCTTCTTTTCAAGCTTT+GGG | + | chr4.1:41033190-41033209 | MS.gene09135:CDS | 30.0% |
| !! | TTTTCCTTCTTTTCAAGCTT+TGG | + | chr4.1:41033189-41033208 | MS.gene09135:CDS | 30.0% |
| AAAGCCTAAAATCATGGTTG+AGG | + | chr4.1:41033234-41033253 | MS.gene09135:CDS | 35.0% | |
| AATGGAACACTCATGAATCT+TGG | - | chr4.1:41033446-41033465 | None:intergenic | 35.0% | |
| ACAATTGGATCTTAACCTTC+CGG | + | chr4.1:41033588-41033607 | MS.gene09135:CDS | 35.0% | |
| ATTCATGAGTGTTCCATTTG+TGG | + | chr4.1:41033448-41033467 | MS.gene09135:CDS | 35.0% | |
| CCCATTTGAAAAGAAACCAT+CGG | - | chr4.1:41033382-41033401 | None:intergenic | 35.0% | |
| GGTTTGAAAGCAGCTATTAA+TGG | + | chr4.1:41033412-41033431 | MS.gene09135:CDS | 35.0% | |
| TGATTCTCAATCAGTTAACC+TGG | + | chr4.1:41033312-41033331 | MS.gene09135:CDS | 35.0% | |
| TTTCAAATGGGGAATCATCA+TGG | + | chr4.1:41033391-41033410 | MS.gene09135:CDS | 35.0% | |
| ! | CCGATGGTTTCTTTTCAAAT+GGG | + | chr4.1:41033379-41033398 | MS.gene09135:CDS | 35.0% |
| ! | CGATGGTTTCTTTTCAAATG+GGG | + | chr4.1:41033380-41033399 | MS.gene09135:CDS | 35.0% |
| ! | GAAACTGATACTTTGTTTCC+CGG | - | chr4.1:41033630-41033649 | None:intergenic | 35.0% |
| ! | GGAAACAAAGTATCAGTTTC+CGG | + | chr4.1:41033630-41033649 | MS.gene09135:CDS | 35.0% |
| ! | TTCTCCTCAACCATGATTTT+AGG | - | chr4.1:41033241-41033260 | None:intergenic | 35.0% |
| !! | GTTTGTTATGGAGGAAAAGA+TGG | + | chr4.1:41032835-41032854 | MS.gene09135:CDS | 35.0% |
| !! | TGTTTGATTCTTCTAGCTCA+AGG | + | chr4.1:41033031-41033050 | MS.gene09135:CDS | 35.0% |
| !!! | ACCATTGATTTTTGTGTAGC+CGG | - | chr4.1:41033652-41033671 | None:intergenic | 35.0% |
| AAAAGGGAAAAGGGTAGTCA+TGG | + | chr4.1:41033094-41033113 | MS.gene09135:CDS | 40.0% | |
| AGCAGCTATTAATGGGAACA+AGG | + | chr4.1:41033420-41033439 | MS.gene09135:CDS | 40.0% | |
| ATTCATCACTATTCGCAACC+AGG | - | chr4.1:41033333-41033352 | None:intergenic | 40.0% | |
| GAATCATGTGATGAAGACTG+TGG | - | chr4.1:41033298-41033317 | None:intergenic | 40.0% | |
| GGAAATCATAAGCAACATGG+TGG | + | chr4.1:41033055-41033074 | MS.gene09135:CDS | 40.0% | |
| GGTGGAAATCATAAGCAACA+TGG | + | chr4.1:41033052-41033071 | MS.gene09135:CDS | 40.0% | |
| TCCGGCTACACAAAAATCAA+TGG | + | chr4.1:41033648-41033667 | MS.gene09135:CDS | 40.0% | |
| TTTGAAGAAGCTGAGAAACC+TGG | + | chr4.1:41033352-41033371 | MS.gene09135:CDS | 40.0% | |
| ! | GCCGATGGTTTCTTTTCAAA+TGG | + | chr4.1:41033378-41033397 | MS.gene09135:CDS | 40.0% |
| !! | TTGATTCTTCTAGCTCAAGG+TGG | + | chr4.1:41033034-41033053 | MS.gene09135:CDS | 40.0% |
| AAGAAGCTGAGAAACCTGGT+GGG | + | chr4.1:41033356-41033375 | MS.gene09135:CDS | 45.0% | |
| CCAAAGGAAAACGTACCAAG+AGG | + | chr4.1:41032891-41032910 | MS.gene09135:CDS | 45.0% | |
| CCACCCAAAGCTTGAAAAGA+AGG | - | chr4.1:41033196-41033215 | None:intergenic | 45.0% | |
| CGTGAACTCTGAACCACAAA+TGG | - | chr4.1:41033464-41033483 | None:intergenic | 45.0% | |
| GATGCAACTCACATAGCCAA+AGG | + | chr4.1:41032875-41032894 | MS.gene09135:CDS | 45.0% | |
| GGTGAGACTAGCACAAAACT+TGG | + | chr4.1:41033130-41033149 | MS.gene09135:CDS | 45.0% | |
| ! | CCTCTTGGTACGTTTTCCTT+TGG | - | chr4.1:41032894-41032913 | None:intergenic | 45.0% |
| !! | TCCTTGTGGTGTTGTTGCTA+TGG | + | chr4.1:41032928-41032947 | MS.gene09135:CDS | 45.0% |
| !!! | CCTTCTTTTCAAGCTTTGGG+TGG | + | chr4.1:41033193-41033212 | MS.gene09135:CDS | 45.0% |
| CTTGGCCTAACTCCTTCATC+CGG | - | chr4.1:41033559-41033578 | None:intergenic | 50.0% | |
| GAAGAAGCTGAGAAACCTGG+TGG | + | chr4.1:41033355-41033374 | MS.gene09135:CDS | 50.0% | |
| GCCATAGCAACAACACCACA+AGG | - | chr4.1:41032932-41032951 | None:intergenic | 50.0% | |
| TAATGGCAACCCACCAAAGC+CGG | - | chr4.1:41033688-41033707 | None:intergenic | 50.0% | |
| TGTGGTTCAGAGTTCACGTC+CGG | + | chr4.1:41033466-41033485 | MS.gene09135:CDS | 50.0% | |
| TGTTTCCCGGAGATCCTCTT+CGG | - | chr4.1:41033617-41033636 | None:intergenic | 50.0% | |
| TTCACGTCCGGACAAGCATT+GGG | + | chr4.1:41033478-41033497 | MS.gene09135:CDS | 50.0% | |
| TTGGCCTAACTCCTTCATCC+GGG | - | chr4.1:41033558-41033577 | None:intergenic | 50.0% | |
| ! | TGGACACATGAGGAGGCATA+GGG | + | chr4.1:41033501-41033520 | MS.gene09135:CDS | 50.0% |
| !! | AAGCATTGGGTGGACACATG+AGG | + | chr4.1:41033491-41033510 | MS.gene09135:CDS | 50.0% |
| !! | TCAAGCTTTGGGTGGTCACA+GGG | + | chr4.1:41033201-41033220 | MS.gene09135:CDS | 50.0% |
| !! | TTCAAGCTTTGGGTGGTCAC+AGG | + | chr4.1:41033200-41033219 | MS.gene09135:CDS | 50.0% |
| AAAGAAACCATCGGCCCACC+AGG | - | chr4.1:41033373-41033392 | None:intergenic | 55.0% | |
| CATTGGGTGGACACATGAGG+AGG | + | chr4.1:41033494-41033513 | MS.gene09135:CDS | 55.0% | |
| CGGATGAAGGAGTTAGGCCA+AGG | + | chr4.1:41033557-41033576 | MS.gene09135:CDS | 55.0% | |
| GTGTCCACCCAATGCTTGTC+CGG | - | chr4.1:41033488-41033507 | None:intergenic | 55.0% | |
| GTTCACGTCCGGACAAGCAT+TGG | + | chr4.1:41033477-41033496 | MS.gene09135:CDS | 55.0% | |
| GTTTCCCGGAGATCCTCTTC+GGG | - | chr4.1:41033616-41033635 | None:intergenic | 55.0% | |
| TGGCCTAACTCCTTCATCCG+GGG | - | chr4.1:41033557-41033576 | None:intergenic | 55.0% | |
| TGTGATGAAGACTGTGGCCG+AGG | - | chr4.1:41033292-41033311 | None:intergenic | 55.0% | |
| ! | GTGGACACATGAGGAGGCAT+AGG | + | chr4.1:41033500-41033519 | MS.gene09135:CDS | 55.0% |
| !! | AATGGTGATGGCTGCTGCTC+CGG | + | chr4.1:41033666-41033685 | MS.gene09135:CDS | 55.0% |
| ! | GAGGAGGCATAGGGCATCTG+TGG | + | chr4.1:41033510-41033529 | MS.gene09135:CDS | 60.0% |
| ! | TGAGAAACCTGGTGGGCCGA+TGG | + | chr4.1:41033363-41033382 | MS.gene09135:CDS | 60.0% |
| !! | ACGTCCGGACAAGCATTGGG+TGG | + | chr4.1:41033481-41033500 | MS.gene09135:CDS | 60.0% |
| CGGCCCCGGATGAAGGAGTT+AGG | + | chr4.1:41033551-41033570 | MS.gene09135:CDS | 65.0% | |
| GATGGCTGCTGCTCCGGCTT+TGG | + | chr4.1:41033672-41033691 | MS.gene09135:CDS | 65.0% | |
| GGCATCTGTGGCAAACGCCG+CGG | + | chr4.1:41033522-41033541 | MS.gene09135:CDS | 65.0% | |
| TAACCTTCCGGCGCCCGAAG+AGG | + | chr4.1:41033600-41033619 | MS.gene09135:CDS | 65.0% | |
| ! | GCTGCTGCTCCGGCTTTGGT+GGG | + | chr4.1:41033676-41033695 | MS.gene09135:CDS | 65.0% |
| !! | TGCTGCGGCAGTGGTGATGG+TGG | - | chr4.1:41033268-41033287 | None:intergenic | 65.0% |
| CACCACTGCCGCAGCAGCCT+CGG | + | chr4.1:41033272-41033291 | MS.gene09135:CDS | 70.0% | |
| CGGAGATCCTCTTCGGGCGC+CGG | - | chr4.1:41033610-41033629 | None:intergenic | 70.0% | |
| CGGCGCCCGAAGAGGATCTC+CGG | + | chr4.1:41033608-41033627 | MS.gene09135:CDS | 70.0% | |
| GACTGTGGCCGAGGCTGCTG+CGG | - | chr4.1:41033283-41033302 | None:intergenic | 70.0% | |
| GGCGCCCGAAGAGGATCTCC+GGG | + | chr4.1:41033609-41033628 | MS.gene09135:CDS | 70.0% | |
| GGCTGCTGCGGCAGTGGTGA+TGG | - | chr4.1:41033271-41033290 | None:intergenic | 70.0% | |
| ! | GGCTGCTGCTCCGGCTTTGG+TGG | + | chr4.1:41033675-41033694 | MS.gene09135:CDS | 70.0% |
| !! | GATCCTCTTCGGGCGCCGGA+AGG | - | chr4.1:41033606-41033625 | None:intergenic | 70.0% |
| GCTGTCGCGGCCCCGGATGA+AGG | + | chr4.1:41033544-41033563 | MS.gene09135:CDS | 75.0% | |
| GGCAAACGCCGCGGCTGTCG+CGG | + | chr4.1:41033531-41033550 | MS.gene09135:CDS | 75.0% | |
| ! | ATCCGGGGCCGCGACAGCCG+CGG | - | chr4.1:41033542-41033561 | None:intergenic | 80.0% |
| ! | GGCCGAGGCTGCTGCGGCAG+TGG | - | chr4.1:41033277-41033296 | None:intergenic | 80.0% |
| ! | CGCCGCGGCTGTCGCGGCCC+CGG | + | chr4.1:41033537-41033556 | MS.gene09135:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 41032827 | 41033711 | 41032827 | ID=MS.gene09135 |
| chr4.1 | mRNA | 41032827 | 41033711 | 41032827 | ID=MS.gene09135.t1;Parent=MS.gene09135 |
| chr4.1 | exon | 41032827 | 41033711 | 41032827 | ID=MS.gene09135.t1.exon1;Parent=MS.gene09135.t1 |
| chr4.1 | CDS | 41032827 | 41033711 | 41032827 | ID=cds.MS.gene09135.t1;Parent=MS.gene09135.t1 |
| Gene Sequence |
| Protein sequence |
