Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09218.t1 | XP_013446576.1 | 91.2 | 410 | 36 | 0 | 1 | 410 | 1 | 410 | 2.60E-206 | 728 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09218.t1 | Q8S9L0 | 43.2 | 250 | 109 | 9 | 9 | 234 | 8 | 248 | 6.9e-35 | 149.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09218.t1 | A0A072TUS3 | 91.2 | 410 | 36 | 0 | 1 | 410 | 1 | 410 | 1.8e-206 | 728.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09218.t1 | TF | SBP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09218.t1 | MTR_8g080670 | 91.220 | 410 | 36 | 0 | 1 | 410 | 1 | 410 | 0.0 | 710 |
| MS.gene09218.t1 | MTR_8g080680 | 60.959 | 438 | 107 | 3 | 1 | 422 | 1 | 390 | 2.10e-177 | 501 |
| MS.gene09218.t1 | MTR_8g080690 | 60.891 | 404 | 114 | 6 | 1 | 388 | 1 | 376 | 2.88e-140 | 406 |
| MS.gene09218.t1 | MTR_3g085180 | 50.331 | 453 | 188 | 12 | 1 | 435 | 1 | 434 | 4.54e-114 | 342 |
| MS.gene09218.t1 | MTR_1g053715 | 37.175 | 269 | 129 | 7 | 123 | 365 | 17 | 271 | 6.35e-35 | 133 |
| MS.gene09218.t1 | MTR_8g463140 | 63.158 | 76 | 28 | 0 | 159 | 234 | 62 | 137 | 5.35e-29 | 112 |
| MS.gene09218.t1 | MTR_7g092930 | 65.789 | 76 | 26 | 0 | 159 | 234 | 65 | 140 | 2.47e-28 | 114 |
| MS.gene09218.t1 | MTR_4g088555 | 58.140 | 86 | 34 | 1 | 150 | 235 | 53 | 136 | 4.07e-27 | 105 |
| MS.gene09218.t1 | MTR_2g078770 | 54.945 | 91 | 40 | 1 | 144 | 234 | 41 | 130 | 4.63e-27 | 106 |
| MS.gene09218.t1 | MTR_8g005960 | 44.521 | 146 | 70 | 4 | 94 | 234 | 120 | 259 | 4.84e-27 | 110 |
| MS.gene09218.t1 | MTR_7g444860 | 45.038 | 131 | 52 | 2 | 116 | 234 | 99 | 221 | 1.14e-25 | 106 |
| MS.gene09218.t1 | MTR_5g046670 | 58.667 | 75 | 31 | 0 | 160 | 234 | 242 | 316 | 1.55e-24 | 106 |
| MS.gene09218.t1 | MTR_4g109770 | 39.490 | 157 | 71 | 5 | 99 | 234 | 42 | 195 | 3.38e-24 | 104 |
| MS.gene09218.t1 | MTR_2g014200 | 57.333 | 75 | 32 | 0 | 160 | 234 | 62 | 136 | 7.72e-24 | 97.1 |
| MS.gene09218.t1 | MTR_7g028740 | 51.765 | 85 | 41 | 0 | 150 | 234 | 65 | 149 | 3.55e-23 | 100 |
| MS.gene09218.t1 | MTR_3g099080 | 45.872 | 109 | 57 | 1 | 162 | 270 | 98 | 204 | 8.13e-23 | 99.8 |
| MS.gene09218.t1 | MTR_2g461920 | 41.406 | 128 | 59 | 3 | 122 | 234 | 117 | 243 | 1.21e-22 | 100 |
| MS.gene09218.t1 | MTR_1g035010 | 45.872 | 109 | 51 | 2 | 127 | 234 | 75 | 176 | 2.16e-21 | 97.8 |
| MS.gene09218.t1 | MTR_8g096780 | 44.737 | 114 | 60 | 1 | 162 | 275 | 99 | 209 | 2.72e-21 | 95.5 |
| MS.gene09218.t1 | MTR_2g046550 | 46.218 | 119 | 56 | 2 | 127 | 241 | 104 | 218 | 2.91e-21 | 97.4 |
| MS.gene09218.t1 | MTR_1g086250 | 56.757 | 74 | 32 | 0 | 161 | 234 | 146 | 219 | 1.17e-20 | 95.5 |
| MS.gene09218.t1 | MTR_7g110320 | 38.125 | 160 | 87 | 4 | 127 | 286 | 113 | 260 | 2.99e-20 | 94.0 |
| MS.gene09218.t1 | MTR_7g110320 | 38.125 | 160 | 87 | 4 | 127 | 286 | 113 | 260 | 3.31e-20 | 94.0 |
| MS.gene09218.t1 | MTR_2g020620 | 32.934 | 167 | 95 | 5 | 169 | 329 | 97 | 252 | 9.42e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09218.t1 | AT1G27360 | 42.745 | 255 | 117 | 8 | 1 | 234 | 1 | 247 | 2.38e-38 | 143 |
| MS.gene09218.t1 | AT1G27360 | 42.745 | 255 | 117 | 8 | 1 | 234 | 1 | 247 | 2.38e-38 | 143 |
| MS.gene09218.t1 | AT1G27360 | 42.745 | 255 | 117 | 8 | 1 | 234 | 1 | 247 | 2.38e-38 | 143 |
| MS.gene09218.t1 | AT1G27360 | 42.745 | 255 | 117 | 8 | 1 | 234 | 1 | 247 | 2.38e-38 | 143 |
| MS.gene09218.t1 | AT5G43270 | 34.253 | 435 | 195 | 21 | 1 | 393 | 1 | 386 | 1.07e-37 | 142 |
| MS.gene09218.t1 | AT5G43270 | 34.253 | 435 | 195 | 21 | 1 | 393 | 1 | 386 | 1.07e-37 | 142 |
| MS.gene09218.t1 | AT5G43270 | 34.253 | 435 | 195 | 21 | 1 | 393 | 1 | 386 | 1.07e-37 | 142 |
| MS.gene09218.t1 | AT1G27370 | 41.633 | 245 | 114 | 7 | 12 | 234 | 11 | 248 | 8.36e-37 | 138 |
| MS.gene09218.t1 | AT1G27370 | 41.633 | 245 | 114 | 7 | 12 | 234 | 11 | 248 | 2.40e-36 | 138 |
| MS.gene09218.t1 | AT1G27370 | 41.633 | 245 | 114 | 7 | 12 | 234 | 11 | 248 | 2.40e-36 | 138 |
| MS.gene09218.t1 | AT1G27370 | 41.633 | 245 | 114 | 7 | 12 | 234 | 11 | 248 | 2.40e-36 | 138 |
| MS.gene09218.t1 | AT1G27370 | 41.633 | 245 | 114 | 7 | 12 | 234 | 11 | 248 | 2.40e-36 | 138 |
| MS.gene09218.t1 | AT1G27370 | 41.633 | 245 | 114 | 7 | 12 | 234 | 11 | 248 | 2.40e-36 | 138 |
| MS.gene09218.t1 | AT1G27370 | 41.633 | 245 | 114 | 7 | 12 | 234 | 11 | 248 | 2.40e-36 | 138 |
| MS.gene09218.t1 | AT2G42200 | 45.517 | 145 | 56 | 4 | 160 | 304 | 72 | 193 | 1.03e-28 | 116 |
| MS.gene09218.t1 | AT3G57920 | 49.541 | 109 | 48 | 2 | 129 | 234 | 27 | 131 | 1.73e-27 | 112 |
| MS.gene09218.t1 | AT1G02065 | 50.000 | 114 | 51 | 1 | 127 | 234 | 147 | 260 | 4.22e-27 | 111 |
| MS.gene09218.t1 | AT1G69170 | 62.069 | 87 | 30 | 2 | 150 | 234 | 111 | 196 | 6.81e-27 | 112 |
| MS.gene09218.t1 | AT2G33810 | 58.667 | 75 | 31 | 0 | 161 | 235 | 53 | 127 | 8.47e-25 | 99.4 |
| MS.gene09218.t1 | AT3G15270 | 56.757 | 74 | 32 | 0 | 161 | 234 | 62 | 135 | 2.91e-23 | 96.7 |
| MS.gene09218.t1 | AT1G53160 | 58.108 | 74 | 31 | 0 | 161 | 234 | 53 | 126 | 2.59e-22 | 94.0 |
| MS.gene09218.t1 | AT1G53160 | 58.108 | 74 | 31 | 0 | 161 | 234 | 53 | 126 | 2.63e-22 | 94.0 |
| MS.gene09218.t1 | AT1G53160 | 58.108 | 74 | 31 | 0 | 161 | 234 | 53 | 126 | 2.63e-22 | 94.0 |
| MS.gene09218.t1 | AT5G50670 | 54.667 | 75 | 34 | 0 | 160 | 234 | 99 | 173 | 3.35e-22 | 97.8 |
| MS.gene09218.t1 | AT5G50670 | 54.667 | 75 | 34 | 0 | 160 | 234 | 99 | 173 | 3.35e-22 | 97.8 |
| MS.gene09218.t1 | AT5G50570 | 54.667 | 75 | 34 | 0 | 160 | 234 | 99 | 173 | 3.35e-22 | 97.8 |
| MS.gene09218.t1 | AT5G50570 | 54.667 | 75 | 34 | 0 | 160 | 234 | 99 | 173 | 3.35e-22 | 97.8 |
| MS.gene09218.t1 | AT3G60030 | 57.534 | 73 | 31 | 0 | 162 | 234 | 127 | 199 | 2.54e-21 | 97.4 |
| MS.gene09218.t1 | AT2G47070 | 48.958 | 96 | 42 | 1 | 139 | 234 | 90 | 178 | 9.79e-21 | 95.5 |
| MS.gene09218.t1 | AT1G20980 | 56.000 | 75 | 33 | 0 | 160 | 234 | 118 | 192 | 4.21e-20 | 94.0 |
| MS.gene09218.t1 | AT1G76580 | 56.000 | 75 | 33 | 0 | 160 | 234 | 112 | 186 | 1.98e-19 | 91.3 |
| MS.gene09218.t1 | AT1G76580 | 56.000 | 75 | 33 | 0 | 160 | 234 | 112 | 186 | 2.03e-19 | 91.3 |
| MS.gene09218.t1 | AT1G76580 | 56.000 | 75 | 33 | 0 | 160 | 234 | 112 | 186 | 3.67e-19 | 90.9 |
| MS.gene09218.t1 | AT1G02065 | 47.191 | 89 | 41 | 1 | 127 | 209 | 147 | 235 | 2.06e-17 | 82.0 |
| MS.gene09218.t1 | AT5G18830 | 46.575 | 73 | 39 | 0 | 162 | 234 | 138 | 210 | 6.09e-16 | 80.9 |
| MS.gene09218.t1 | AT5G18830 | 46.575 | 73 | 39 | 0 | 162 | 234 | 138 | 210 | 6.13e-16 | 80.9 |
| MS.gene09218.t1 | AT5G18830 | 46.575 | 73 | 39 | 0 | 162 | 234 | 138 | 210 | 6.58e-16 | 80.5 |
| MS.gene09218.t1 | AT2G47070 | 60.417 | 48 | 19 | 0 | 187 | 234 | 2 | 49 | 1.64e-11 | 67.0 |
Find 77 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGATCTGTTTGAGTTTGA+TGG | 0.225842 | 4.1:+15082989 | MS.gene09218:CDS |
| CATTGATCCTCTTGGTTTCA+AGG | 0.239743 | 4.1:-15084102 | None:intergenic |
| CAAGGACTTTGGATGTAAAA+TGG | 0.260990 | 4.1:-15084084 | None:intergenic |
| TCAATCTAAAACTCGGTAAA+AGG | 0.273664 | 4.1:+15082542 | MS.gene09218:CDS |
| ACTTTCAAATGCAAATTTAC+TGG | 0.299044 | 4.1:-15082419 | None:intergenic |
| TATAACTACCATAGGAGATT+TGG | 0.321384 | 4.1:-15082725 | None:intergenic |
| GCTTCAATAGGCCCTTCTTT+AGG | 0.325945 | 4.1:-15082475 | None:intergenic |
| CCTCTTGGTTTCAAGGACTT+TGG | 0.327846 | 4.1:-15084095 | None:intergenic |
| AGCTTTACCTGCTACATTGC+TGG | 0.356873 | 4.1:-15082771 | None:intergenic |
| ACAAAGATGATTGACTTGAT+TGG | 0.359832 | 4.1:-15083084 | None:intergenic |
| CCAACTGGAAGTGGTTATTC+TGG | 0.361920 | 4.1:+15082313 | MS.gene09218:CDS |
| CTCTAGCCTCATCAGAATAT+TGG | 0.364549 | 4.1:+15084526 | MS.gene09218:CDS |
| GTGCCAATGTTGTCGTTTAT+AGG | 0.365991 | 4.1:-15084022 | None:intergenic |
| TATGGTAGTTATAGATGGTT+TGG | 0.373519 | 4.1:+15082735 | MS.gene09218:CDS |
| GACATTCATGTTAGTCCAAC+TGG | 0.375986 | 4.1:-15084665 | None:intergenic |
| GCAGTCTTTGAATAAGCAAA+TGG | 0.377299 | 4.1:-15083932 | None:intergenic |
| CAAAGATGATTGACTTGATT+GGG | 0.382950 | 4.1:-15083083 | None:intergenic |
| CCGCCTCTCTGCCAGGTTGA+AGG | 0.385535 | 4.1:+15082637 | MS.gene09218:CDS |
| TGCTATGGCTTGAGCGGTAC+TGG | 0.386033 | 4.1:-15084481 | None:intergenic |
| TCTCCTATGGTAGTTATAGA+TGG | 0.387501 | 4.1:+15082730 | MS.gene09218:CDS |
| CTGACCTGCATTGATCCTCT+TGG | 0.395116 | 4.1:-15084110 | None:intergenic |
| CTCTGCCAGGTTGAAGGTTG+TGG | 0.395224 | 4.1:+15082643 | MS.gene09218:CDS |
| CTCCCTCTTCACAGTGGGAA+TGG | 0.400387 | 4.1:+15082182 | MS.gene09218:CDS |
| CATCAAACTCAAACAGATCA+TGG | 0.444519 | 4.1:-15082988 | None:intergenic |
| GGTGCATTAGAAGCTTCAAT+AGG | 0.450824 | 4.1:-15082487 | None:intergenic |
| ATGTTCTAGAGAAACGGATT+TGG | 0.456583 | 4.1:-15084445 | None:intergenic |
| AAAATTGAATTACCTAAAGA+AGG | 0.460103 | 4.1:+15082463 | MS.gene09218:CDS |
| TCCCTCTTCACAGTGGGAAT+GGG | 0.463221 | 4.1:+15082183 | MS.gene09218:CDS |
| ATCTAAATGTTCTAGAGAAA+CGG | 0.467117 | 4.1:-15084451 | None:intergenic |
| CAATCAGTTCATCACCAACT+AGG | 0.472722 | 4.1:+15082383 | MS.gene09218:CDS |
| TTCGATATGCCAACTGGAAG+TGG | 0.474548 | 4.1:+15082304 | MS.gene09218:CDS |
| ACATTGTAAGTTCTGAGCAT+TGG | 0.495722 | 4.1:-15082614 | None:intergenic |
| AATTCGATACTCCAGTTTGG+TGG | 0.496264 | 4.1:-15082256 | None:intergenic |
| GACGCGTCATCTTTAGTTGT+TGG | 0.503063 | 4.1:+15082577 | MS.gene09218:CDS |
| ACAATGTCCGCCTCTCTGCC+AGG | 0.504313 | 4.1:+15082630 | MS.gene09218:CDS |
| TCTAATTCGATACTCCAGTT+TGG | 0.509220 | 4.1:-15082259 | None:intergenic |
| TGACAGAAGAGAGGAAGCAC+AGG | 0.512878 | 4.1:-15084397 | None:intergenic |
| CAGTCTTTGAATAAGCAAAT+GGG | 0.517662 | 4.1:-15083931 | None:intergenic |
| GATAGCATAGTTACAGTACT+TGG | 0.519974 | 4.1:-15084046 | None:intergenic |
| CTCTTCTGTCAACCAGTCCG+TGG | 0.520942 | 4.1:+15084409 | MS.gene09218:CDS |
| TGGTTGTTCGATATGCCAAC+TGG | 0.525788 | 4.1:+15082298 | MS.gene09218:CDS |
| TTTACCATTGGAATCATCAT+GGG | 0.526394 | 4.1:-15082443 | None:intergenic |
| CGTCATCTTTAGTTGTTGGA+AGG | 0.527554 | 4.1:+15082581 | MS.gene09218:CDS |
| AGATCATTCCAAATCTCCTA+TGG | 0.535644 | 4.1:+15082717 | MS.gene09218:CDS |
| TTGTGGCCTTGACCTTTCAT+CGG | 0.541799 | 4.1:+15082660 | MS.gene09218:CDS |
| CGCATATGAATCCCACGGAC+TGG | 0.545835 | 4.1:-15084421 | None:intergenic |
| TAGACCGAGAAAATAATGTC+TGG | 0.549417 | 4.1:+15082278 | MS.gene09218:CDS |
| TCCCATTCCCACTGTGAAGA+GGG | 0.552746 | 4.1:-15082184 | None:intergenic |
| AATCAGTTCATCACCAACTA+GGG | 0.553568 | 4.1:+15082384 | MS.gene09218:CDS |
| AAACCATCTATAACTACCAT+AGG | 0.563385 | 4.1:-15082733 | None:intergenic |
| CTGACTCGTTGTGTGTGCTA+TGG | 0.564583 | 4.1:-15084496 | None:intergenic |
| ACTGGTGAAAACACGACTCA+AGG | 0.568330 | 4.1:-15084647 | None:intergenic |
| TGAGTTTGAGATCCACATGC+TGG | 0.569545 | 4.1:-15084577 | None:intergenic |
| TCTTCTGTCAACCAGTCCGT+GGG | 0.576912 | 4.1:+15084410 | MS.gene09218:CDS |
| CAAAATCTCCCTCTTCACAG+TGG | 0.588317 | 4.1:+15082176 | MS.gene09218:CDS |
| AAATTGAATTACCTAAAGAA+GGG | 0.590524 | 4.1:+15082464 | MS.gene09218:CDS |
| CAAGGCCACAACCTTCAACC+TGG | 0.591428 | 4.1:-15082648 | None:intergenic |
| CGGTAAAAGGATGAAATTCG+AGG | 0.600138 | 4.1:+15082555 | MS.gene09218:CDS |
| CTAGATACACAAGAAAGCAT+TGG | 0.604314 | 4.1:-15082508 | None:intergenic |
| CCATTGCTCAATCTAAAACT+CGG | 0.604403 | 4.1:+15082535 | MS.gene09218:CDS |
| ATCCCATTCCCACTGTGAAG+AGG | 0.604938 | 4.1:-15082185 | None:intergenic |
| AAAATCTCCCTCTTCACAGT+GGG | 0.605421 | 4.1:+15082177 | MS.gene09218:CDS |
| AAGCCTATAAACGACAACAT+TGG | 0.614145 | 4.1:+15084019 | MS.gene09218:CDS |
| GAAACCAAGAGGATCAATGC+AGG | 0.614595 | 4.1:+15084106 | MS.gene09218:CDS |
| AGTTCCCATGATGATTCCAA+TGG | 0.616986 | 4.1:+15082439 | MS.gene09218:CDS |
| CCAGAATAACCACTTCCAGT+TGG | 0.626070 | 4.1:-15082313 | None:intergenic |
| CAATATTCTGATGAGGCTAG+AGG | 0.629859 | 4.1:-15084525 | None:intergenic |
| AATATGTCGATTCCAGCATG+TGG | 0.630965 | 4.1:+15084565 | MS.gene09218:CDS |
| CAACCTTCAACCTGGCAGAG+AGG | 0.635133 | 4.1:-15082640 | None:intergenic |
| CCAAAGTCCTTGAAACCAAG+AGG | 0.636381 | 4.1:+15084095 | MS.gene09218:CDS |
| TTTGGATGTAAAATGGACAT+CGG | 0.653646 | 4.1:-15084077 | None:intergenic |
| CGGACTGGTTGACAGAAGAG+AGG | 0.658311 | 4.1:-15084406 | None:intergenic |
| ACTGTGCCAATATTCTGATG+AGG | 0.658353 | 4.1:-15084532 | None:intergenic |
| CCTTCAACCTGGCAGAGAGG+CGG | 0.660903 | 4.1:-15082637 | None:intergenic |
| TCTTTGTCTTCGTCACCCTG+TGG | 0.667989 | 4.1:+15083100 | MS.gene09218:CDS |
| TTGGTCGCATATGAATCCCA+CGG | 0.682290 | 4.1:-15084426 | None:intergenic |
| TGTGTGTGCTATGGCTTGAG+CGG | 0.704952 | 4.1:-15084487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAACATAATCTATTTATTT+TGG | + | chr4.1:15084200-15084219 | MS.gene09218:intron | 10.0% |
| !! | AAACATAAATGAACTAAAAT+TGG | - | chr4.1:15083803-15083822 | None:intergenic | 15.0% |
| !!! | AGGAAATAATAGTATTATTT+TGG | + | chr4.1:15082832-15082851 | MS.gene09218:intron | 15.0% |
| !!! | ATTAAACTTGCTTTTTTTTT+TGG | + | chr4.1:15082909-15082928 | MS.gene09218:intron | 15.0% |
| !! | AAAATTGAATTACCTAAAGA+AGG | + | chr4.1:15082463-15082482 | MS.gene09218:CDS | 20.0% |
| !! | AAATTGAATTACCTAAAGAA+GGG | + | chr4.1:15082464-15082483 | MS.gene09218:CDS | 20.0% |
| !! | TGTAATTGATTAGAGTAATA+TGG | + | chr4.1:15084260-15084279 | MS.gene09218:intron | 20.0% |
| !!! | AGTTGAATTTTTATTACATG+AGG | - | chr4.1:15083745-15083764 | None:intergenic | 20.0% |
| !!! | ATTTATTTCATGGATCTTTT+TGG | + | chr4.1:15083441-15083460 | MS.gene09218:intron | 20.0% |
| !!! | CAGTTTTACAATAATGATTA+CGG | - | chr4.1:15083063-15083082 | None:intergenic | 20.0% |
| !!! | GTCATTTTTCATTTATTTCA+TGG | + | chr4.1:15083431-15083450 | MS.gene09218:intron | 20.0% |
| !!! | TTTTAACTTCTTGTAAATAC+TGG | + | chr4.1:15083409-15083428 | MS.gene09218:intron | 20.0% |
| ! | AAACTTAGTAGAAAATCATG+AGG | - | chr4.1:15084160-15084179 | None:intergenic | 25.0% |
| ! | ACTTTCAAATGCAAATTTAC+TGG | - | chr4.1:15082422-15082441 | None:intergenic | 25.0% |
| ! | AGAAAAATAAGTATTACCAC+AGG | - | chr4.1:15083119-15083138 | None:intergenic | 25.0% |
| ! | GAAAAATAAGTATTACCACA+GGG | - | chr4.1:15083118-15083137 | None:intergenic | 25.0% |
| ! | GATTAAGCATCTTTATCTTT+AGG | - | chr4.1:15083486-15083505 | None:intergenic | 25.0% |
| ! | GATTAGAAGATAAAAGAGAA+TGG | - | chr4.1:15083876-15083895 | None:intergenic | 25.0% |
| !! | AGGTAATTCAATTTTACCAT+TGG | - | chr4.1:15082458-15082477 | None:intergenic | 25.0% |
| !! | ATTTTCAGTAGCTTTTGTAT+CGG | - | chr4.1:15082224-15082243 | None:intergenic | 25.0% |
| !! | TCAAGAGAAAATCTTTTGTT+TGG | - | chr4.1:15084000-15084019 | None:intergenic | 25.0% |
| !!! | AACTTGCTTTTTTTTTTGGA+TGG | + | chr4.1:15082913-15082932 | MS.gene09218:intron | 25.0% |
| !!! | AAGAGAAAATCTTTTGTTTG+GGG | - | chr4.1:15083998-15084017 | None:intergenic | 25.0% |
| !!! | ATCTAAATGTTCTAGAGAAA+CGG | - | chr4.1:15084454-15084473 | None:intergenic | 25.0% |
| !!! | CAAGAGAAAATCTTTTGTTT+GGG | - | chr4.1:15083999-15084018 | None:intergenic | 25.0% |
| !!! | TAATTTTTGGTTCTACATCA+GGG | + | chr4.1:15082344-15082363 | MS.gene09218:CDS | 25.0% |
| !!! | TGTATAGTGGATTTACTTAA+AGG | + | chr4.1:15083628-15083647 | MS.gene09218:intron | 25.0% |
| !!! | TTCTGCTTGTTATTTGATTT+AGG | + | chr4.1:15083162-15083181 | MS.gene09218:intron | 25.0% |
| AAAAATTTCAACCACCAAAC+TGG | + | chr4.1:15082245-15082264 | MS.gene09218:CDS | 30.0% | |
| AAACAGTTATCGTGATTGTT+TGG | + | chr4.1:15083658-15083677 | MS.gene09218:intron | 30.0% | |
| AAACCATCTATAACTACCAT+AGG | - | chr4.1:15082736-15082755 | None:intergenic | 30.0% | |
| AAATGAATAACACTGTGCAA+GGG | - | chr4.1:15084307-15084326 | None:intergenic | 30.0% | |
| AACTAAAATTGGCTACTCTT+CGG | - | chr4.1:15083792-15083811 | None:intergenic | 30.0% | |
| ATAATAACCATGCAGAGTAA+TGG | + | chr4.1:15083561-15083580 | MS.gene09218:intron | 30.0% | |
| CAGTCTTTGAATAAGCAAAT+GGG | - | chr4.1:15083934-15083953 | None:intergenic | 30.0% | |
| TACCTATAAAGTTAGTAAGC+AGG | - | chr4.1:15083320-15083339 | None:intergenic | 30.0% | |
| TATAACTACCATAGGAGATT+TGG | - | chr4.1:15082728-15082747 | None:intergenic | 30.0% | |
| TATGGTAGTTATAGATGGTT+TGG | + | chr4.1:15082735-15082754 | MS.gene09218:CDS | 30.0% | |
| TCATATTAGAGTTGCTAGAA+GGG | + | chr4.1:15083584-15083603 | MS.gene09218:intron | 30.0% | |
| TGATGTTCCTAAAACTAGAT+TGG | + | chr4.1:15083696-15083715 | MS.gene09218:intron | 30.0% | |
| TGTTTGGATCTAATTGACAT+AGG | + | chr4.1:15082812-15082831 | MS.gene09218:intron | 30.0% | |
| TTAACAACGGTATGATTGTT+TGG | + | chr4.1:15082796-15082815 | MS.gene09218:intron | 30.0% | |
| TTACTCTAATCAATTACACC+TGG | - | chr4.1:15084258-15084277 | None:intergenic | 30.0% | |
| TTATCTTATTCGTGTCACAA+AGG | - | chr4.1:15083508-15083527 | None:intergenic | 30.0% | |
| TTCCTGCTTACTAACTTTAT+AGG | + | chr4.1:15083315-15083334 | MS.gene09218:intron | 30.0% | |
| TTTACCATTGGAATCATCAT+GGG | - | chr4.1:15082446-15082465 | None:intergenic | 30.0% | |
| TTTGGATGTAAAATGGACAT+CGG | - | chr4.1:15084080-15084099 | None:intergenic | 30.0% | |
| ! | AATAATGTTTTGCCGATGAA+AGG | - | chr4.1:15082675-15082694 | None:intergenic | 30.0% |
| ! | ACAACCAGACATTATTTTCT+CGG | - | chr4.1:15082285-15082304 | None:intergenic | 30.0% |
| ! | TCAATCTAAAACTCGGTAAA+AGG | + | chr4.1:15082542-15082561 | MS.gene09218:CDS | 30.0% |
| ! | TTTTACCATTGGAATCATCA+TGG | - | chr4.1:15082447-15082466 | None:intergenic | 30.0% |
| ! | TTTTCAGTAGCTTTTGTATC+GGG | - | chr4.1:15082223-15082242 | None:intergenic | 30.0% |
| !! | ACAAAGATGATTGACTTGAT+TGG | - | chr4.1:15083087-15083106 | None:intergenic | 30.0% |
| !! | AGAGAAAATCTTTTGTTTGG+GGG | - | chr4.1:15083997-15084016 | None:intergenic | 30.0% |
| !! | CAAAGATGATTGACTTGATT+GGG | - | chr4.1:15083086-15083105 | None:intergenic | 30.0% |
| !! | TTGATTTAGGTTGTTAAACC+TGG | + | chr4.1:15083175-15083194 | MS.gene09218:intron | 30.0% |
| !!! | CTAATTTTTGGTTCTACATC+AGG | + | chr4.1:15082343-15082362 | MS.gene09218:CDS | 30.0% |
| !!! | GACTTCTAGATTTTTTTTCC+AGG | - | chr4.1:15083196-15083215 | None:intergenic | 30.0% |
| AAATCTTCTACACCTGCAAA+AGG | - | chr4.1:15084339-15084358 | None:intergenic | 35.0% | |
| AAGCAGAAACGCATATAAAC+TGG | - | chr4.1:15083150-15083169 | None:intergenic | 35.0% | |
| AAGCCTATAAACGACAACAT+TGG | + | chr4.1:15084019-15084038 | MS.gene09218:CDS | 35.0% | |
| AATATGACCATTACTCTGCA+TGG | - | chr4.1:15083571-15083590 | None:intergenic | 35.0% | |
| AATCAGTTCATCACCAACTA+GGG | + | chr4.1:15082384-15082403 | MS.gene09218:CDS | 35.0% | |
| AGATCATTCCAAATCTCCTA+TGG | + | chr4.1:15082717-15082736 | MS.gene09218:CDS | 35.0% | |
| CAAATGAATAACACTGTGCA+AGG | - | chr4.1:15084308-15084327 | None:intergenic | 35.0% | |
| CAAGGACTTTGGATGTAAAA+TGG | - | chr4.1:15084087-15084106 | None:intergenic | 35.0% | |
| CACTTTGCTTAAAATGCTGA+AGG | + | chr4.1:15082963-15082982 | MS.gene09218:intron | 35.0% | |
| CAGGTAAAGCTTCTTAACAA+CGG | + | chr4.1:15082783-15082802 | MS.gene09218:intron | 35.0% | |
| CATCAAACTCAAACAGATCA+TGG | - | chr4.1:15082991-15083010 | None:intergenic | 35.0% | |
| GATAGCATAGTTACAGTACT+TGG | - | chr4.1:15084049-15084068 | None:intergenic | 35.0% | |
| GCAGTCTTTGAATAAGCAAA+TGG | - | chr4.1:15083935-15083954 | None:intergenic | 35.0% | |
| GTCATATTAGAGTTGCTAGA+AGG | + | chr4.1:15083583-15083602 | MS.gene09218:intron | 35.0% | |
| TAGACCGAGAAAATAATGTC+TGG | + | chr4.1:15082278-15082297 | MS.gene09218:CDS | 35.0% | |
| TCTAATTCGATACTCCAGTT+TGG | - | chr4.1:15082262-15082281 | None:intergenic | 35.0% | |
| TCTCCTATGGTAGTTATAGA+TGG | + | chr4.1:15082730-15082749 | MS.gene09218:CDS | 35.0% | |
| ! | AGTGTCTATTGTAACTTGCA+AGG | - | chr4.1:15083344-15083363 | None:intergenic | 35.0% |
| ! | CATGATCTGTTTGAGTTTGA+TGG | + | chr4.1:15082989-15083008 | MS.gene09218:CDS | 35.0% |
| ! | CCATTGCTCAATCTAAAACT+CGG | + | chr4.1:15082535-15082554 | MS.gene09218:CDS | 35.0% |
| ! | CTAGATACACAAGAAAGCAT+TGG | - | chr4.1:15082511-15082530 | None:intergenic | 35.0% |
| ! | CTTGCACAGTGTTATTCATT+TGG | + | chr4.1:15084306-15084325 | MS.gene09218:intron | 35.0% |
| ! | GTTTTGCTAATATCCCTAGT+TGG | - | chr4.1:15082400-15082419 | None:intergenic | 35.0% |
| ! | TTTGGTAGAATACCTTTTGC+AGG | + | chr4.1:15084324-15084343 | MS.gene09218:intron | 35.0% |
| !! | ACATTGTAAGTTCTGAGCAT+TGG | - | chr4.1:15082617-15082636 | None:intergenic | 35.0% |
| !! | ATGTTCTAGAGAAACGGATT+TGG | - | chr4.1:15084448-15084467 | None:intergenic | 35.0% |
| !! | GCTGTTTTGTATGTTTTGCA+AGG | - | chr4.1:15083969-15083988 | None:intergenic | 35.0% |
| !!! | ACTCACACCAATCTAGTTTT+AGG | - | chr4.1:15083706-15083725 | None:intergenic | 35.0% |
| AAAATCTCCCTCTTCACAGT+GGG | + | chr4.1:15082177-15082196 | MS.gene09218:CDS | 40.0% | |
| AATTCGATACTCCAGTTTGG+TGG | - | chr4.1:15082259-15082278 | None:intergenic | 40.0% | |
| ACTGTGCCAATATTCTGATG+AGG | - | chr4.1:15084535-15084554 | None:intergenic | 40.0% | |
| AGTTCCCATGATGATTCCAA+TGG | + | chr4.1:15082439-15082458 | MS.gene09218:CDS | 40.0% | |
| CAATATTCTGATGAGGCTAG+AGG | - | chr4.1:15084528-15084547 | None:intergenic | 40.0% | |
| CAATCAGTTCATCACCAACT+AGG | + | chr4.1:15082383-15082402 | MS.gene09218:CDS | 40.0% | |
| CATGGTGGTAGCAATCAATA+TGG | - | chr4.1:15084226-15084245 | None:intergenic | 40.0% | |
| CATTGATCCTCTTGGTTTCA+AGG | - | chr4.1:15084105-15084124 | None:intergenic | 40.0% | |
| CGGTAAAAGGATGAAATTCG+AGG | + | chr4.1:15082555-15082574 | MS.gene09218:CDS | 40.0% | |
| CGTCATCTTTAGTTGTTGGA+AGG | + | chr4.1:15082581-15082600 | MS.gene09218:CDS | 40.0% | |
| CTCTAGCCTCATCAGAATAT+TGG | + | chr4.1:15084526-15084545 | MS.gene09218:CDS | 40.0% | |
| GGTGCATTAGAAGCTTCAAT+AGG | - | chr4.1:15082490-15082509 | None:intergenic | 40.0% | |
| TACACCTGGCAATATTTGCA+TGG | - | chr4.1:15084244-15084263 | None:intergenic | 40.0% | |
| ! | AGGGATTGCTATTAGAGTTG+TGG | + | chr4.1:15083603-15083622 | MS.gene09218:intron | 40.0% |
| ! | GGGATTGCTATTAGAGTTGT+GGG | + | chr4.1:15083604-15083623 | MS.gene09218:intron | 40.0% |
| ! | GTAGCTTTTGTATCGGGTAA+TGG | - | chr4.1:15082217-15082236 | None:intergenic | 40.0% |
| ! | GTGCCAATGTTGTCGTTTAT+AGG | - | chr4.1:15084025-15084044 | None:intergenic | 40.0% |
| !! | AATATGTCGATTCCAGCATG+TGG | + | chr4.1:15084565-15084584 | MS.gene09218:CDS | 40.0% |
| !! | CTTTTGTATCGGGTAATGGT+AGG | - | chr4.1:15082213-15082232 | None:intergenic | 40.0% |
| !!! | CCGAGTTTTAGATTGAGCAA+TGG | - | chr4.1:15082538-15082557 | None:intergenic | 40.0% |
| !!! | TCTGGCTCTGAGCTAATTTT+TGG | + | chr4.1:15082331-15082350 | MS.gene09218:CDS | 40.0% |
| ACCACCATGCAAATATTGCC+AGG | + | chr4.1:15084237-15084256 | MS.gene09218:intron | 45.0% | |
| ACCTGGCAATATTTGCATGG+TGG | - | chr4.1:15084241-15084260 | None:intergenic | 45.0% | |
| ACTGGTGAAAACACGACTCA+AGG | - | chr4.1:15084650-15084669 | None:intergenic | 45.0% | |
| AGCTTTACCTGCTACATTGC+TGG | - | chr4.1:15082774-15082793 | None:intergenic | 45.0% | |
| CAAAATCTCCCTCTTCACAG+TGG | + | chr4.1:15082176-15082195 | MS.gene09218:CDS | 45.0% | |
| CAACTATAGCCTGCATAGCA+TGG | - | chr4.1:15083224-15083243 | None:intergenic | 45.0% | |
| CCAAAGTCCTTGAAACCAAG+AGG | + | chr4.1:15084095-15084114 | MS.gene09218:CDS | 45.0% | |
| CCAACTGGAAGTGGTTATTC+TGG | + | chr4.1:15082313-15082332 | MS.gene09218:CDS | 45.0% | |
| CCAGAATAACCACTTCCAGT+TGG | - | chr4.1:15082316-15082335 | None:intergenic | 45.0% | |
| CCTCTTGGTTTCAAGGACTT+TGG | - | chr4.1:15084098-15084117 | None:intergenic | 45.0% | |
| GAAACCAAGAGGATCAATGC+AGG | + | chr4.1:15084106-15084125 | MS.gene09218:CDS | 45.0% | |
| GACGCGTCATCTTTAGTTGT+TGG | + | chr4.1:15082577-15082596 | MS.gene09218:CDS | 45.0% | |
| GCTTCAATAGGCCCTTCTTT+AGG | - | chr4.1:15082478-15082497 | None:intergenic | 45.0% | |
| TGGTTGTTCGATATGCCAAC+TGG | + | chr4.1:15082298-15082317 | MS.gene09218:CDS | 45.0% | |
| TTCGATATGCCAACTGGAAG+TGG | + | chr4.1:15082304-15082323 | MS.gene09218:CDS | 45.0% | |
| TTGGTCGCATATGAATCCCA+CGG | - | chr4.1:15084429-15084448 | None:intergenic | 45.0% | |
| ! | AGTCTAAGACCATGCTATGC+AGG | + | chr4.1:15083212-15083231 | MS.gene09218:intron | 45.0% |
| ! | GATTTTGCCAGCAATGTAGC+AGG | + | chr4.1:15082764-15082783 | MS.gene09218:CDS | 45.0% |
| ! | GTTTTGCCGATGAAAGGTCA+AGG | - | chr4.1:15082669-15082688 | None:intergenic | 45.0% |
| ! | TAGAGTTGTGGGCTGTATAG+TGG | + | chr4.1:15083615-15083634 | MS.gene09218:intron | 45.0% |
| ! | TGAGTCGTGTTTTCACCAGT+TGG | + | chr4.1:15084650-15084669 | MS.gene09218:CDS | 45.0% |
| ! | TGAGTTTGAGATCCACATGC+TGG | - | chr4.1:15084580-15084599 | None:intergenic | 45.0% |
| ! | TTGTGGCCTTGACCTTTCAT+CGG | + | chr4.1:15082660-15082679 | MS.gene09218:CDS | 45.0% |
| ATCCCATTCCCACTGTGAAG+AGG | - | chr4.1:15082188-15082207 | None:intergenic | 50.0% | |
| TCCCATTCCCACTGTGAAGA+GGG | - | chr4.1:15082187-15082206 | None:intergenic | 50.0% | |
| TCCCTCTTCACAGTGGGAAT+GGG | + | chr4.1:15082183-15082202 | MS.gene09218:CDS | 50.0% | |
| TCTTCTGTCAACCAGTCCGT+GGG | + | chr4.1:15084410-15084429 | MS.gene09218:CDS | 50.0% | |
| TCTTTGTCTTCGTCACCCTG+TGG | + | chr4.1:15083100-15083119 | MS.gene09218:CDS | 50.0% | |
| TGTGTGTGCTATGGCTTGAG+CGG | - | chr4.1:15084490-15084509 | None:intergenic | 50.0% | |
| ! | CTGACCTGCATTGATCCTCT+TGG | - | chr4.1:15084113-15084132 | None:intergenic | 50.0% |
| ! | CTGACTCGTTGTGTGTGCTA+TGG | - | chr4.1:15084499-15084518 | None:intergenic | 50.0% |
| ! | TGACAGAAGAGAGGAAGCAC+AGG | - | chr4.1:15084400-15084419 | None:intergenic | 50.0% |
| CAACCTTCAACCTGGCAGAG+AGG | - | chr4.1:15082643-15082662 | None:intergenic | 55.0% | |
| CAAGGCCACAACCTTCAACC+TGG | - | chr4.1:15082651-15082670 | None:intergenic | 55.0% | |
| CGCATATGAATCCCACGGAC+TGG | - | chr4.1:15084424-15084443 | None:intergenic | 55.0% | |
| CTCCCTCTTCACAGTGGGAA+TGG | + | chr4.1:15082182-15082201 | MS.gene09218:CDS | 55.0% | |
| CTCTTCTGTCAACCAGTCCG+TGG | + | chr4.1:15084409-15084428 | MS.gene09218:CDS | 55.0% | |
| TGCTATGGCTTGAGCGGTAC+TGG | - | chr4.1:15084484-15084503 | None:intergenic | 55.0% | |
| ! | CTCTGCCAGGTTGAAGGTTG+TGG | + | chr4.1:15082643-15082662 | MS.gene09218:CDS | 55.0% |
| !! | CGGACTGGTTGACAGAAGAG+AGG | - | chr4.1:15084409-15084428 | None:intergenic | 55.0% |
| ACAATGTCCGCCTCTCTGCC+AGG | + | chr4.1:15082630-15082649 | MS.gene09218:CDS | 60.0% | |
| CCTTCAACCTGGCAGAGAGG+CGG | - | chr4.1:15082640-15082659 | None:intergenic | 60.0% | |
| ! | CCGCCTCTCTGCCAGGTTGA+AGG | + | chr4.1:15082637-15082656 | MS.gene09218:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 15082163 | 15084677 | 15082163 | ID=MS.gene09218 |
| chr4.1 | mRNA | 15082163 | 15084677 | 15082163 | ID=MS.gene09218.t1;Parent=MS.gene09218 |
| chr4.1 | exon | 15082163 | 15082785 | 15082163 | ID=MS.gene09218.t1.exon1;Parent=MS.gene09218.t1 |
| chr4.1 | CDS | 15082163 | 15082785 | 15082163 | ID=cds.MS.gene09218.t1;Parent=MS.gene09218.t1 |
| chr4.1 | exon | 15082985 | 15083121 | 15082985 | ID=MS.gene09218.t1.exon2;Parent=MS.gene09218.t1 |
| chr4.1 | CDS | 15082985 | 15083121 | 15082985 | ID=cds.MS.gene09218.t1;Parent=MS.gene09218.t1 |
| chr4.1 | exon | 15083912 | 15084127 | 15083912 | ID=MS.gene09218.t1.exon3;Parent=MS.gene09218.t1 |
| chr4.1 | CDS | 15083912 | 15084127 | 15083912 | ID=cds.MS.gene09218.t1;Parent=MS.gene09218.t1 |
| chr4.1 | exon | 15084346 | 15084677 | 15084346 | ID=MS.gene09218.t1.exon4;Parent=MS.gene09218.t1 |
| chr4.1 | CDS | 15084346 | 15084677 | 15084346 | ID=cds.MS.gene09218.t1;Parent=MS.gene09218.t1 |
| Gene Sequence |
| Protein sequence |
