AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09342

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09342.t1 MTR_7g028855 63.314 338 48 5 1 337 1 263 5.91e-127 389
MS.gene09342.t1 MTR_7g446520 57.432 296 48 4 61 356 15 232 1.11e-98 311
MS.gene09342.t1 MTR_7g446480 41.969 386 86 7 1 384 1 250 3.34e-71 237
MS.gene09342.t1 MTR_7g446510 82.353 85 15 0 272 356 156 240 1.55e-40 152
MS.gene09342.t1 MTR_7g446510 47.273 110 19 1 375 445 48 157 3.85e-20 93.2
MS.gene09342.t1 MTR_5g076070 30.392 204 141 1 156 359 16 218 7.20e-26 108
MS.gene09342.t1 MTR_1g070355 36.025 161 103 0 196 356 76 236 7.52e-26 113
MS.gene09342.t1 MTR_8g467420 48.193 83 42 1 177 258 61 143 1.43e-19 87.0
MS.gene09342.t1 MTR_6g022080 24.419 172 130 0 185 356 76 247 2.76e-16 80.1
MS.gene09342.t1 MTR_0060s0090 40.000 80 48 0 197 276 59 138 2.60e-14 71.6
MS.gene09342.t1 MTR_6g053140 29.570 186 105 4 124 305 41 204 4.48e-13 69.7
MS.gene09342.t1 MTR_3g448650 42.500 80 46 0 190 269 78 157 1.58e-12 67.4
MS.gene09342.t1 MTR_0402s0040 32.716 162 97 4 198 354 30 184 8.16e-12 68.9
MS.gene09342.t1 MTR_2g098880 34.375 160 96 4 141 295 7 162 1.33e-11 66.2
MS.gene09342.t1 MTR_2g098880 34.375 160 96 4 141 295 19 174 1.78e-11 65.9
MS.gene09342.t1 MTR_6g072520 67.308 52 14 2 1 51 1 50 4.06e-11 62.0
MS.gene09342.t1 MTR_3g080590 50.000 58 29 0 187 244 98 155 4.94e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09342.t1 AT4G38180 36.076 158 98 3 198 353 77 233 1.82e-13 75.1
MS.gene09342.t1 AT3G07500 35.526 152 83 6 167 315 8 147 4.93e-12 66.6
MS.gene09342.t1 AT1G10240 31.343 201 120 7 159 354 25 212 1.66e-11 68.6
MS.gene09342.t1 AT1G10240 31.343 201 120 7 159 354 25 212 1.66e-11 68.6

Find 171 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATGACTTTACGGATTT+TGG 0.057115 6.2:-33236298 MS.gene09342:CDS
ATCCTTCTCCCACGTCTTTC+TGG 0.095830 6.2:+33233575 None:intergenic
ATCCTCCTCCCACGTCTTTC+TGG 0.104496 6.2:+33233473 None:intergenic
AATAAGAACTTGTCATATAA+TGG 0.247315 6.2:-33235330 MS.gene09342:CDS
TGTTCATAACAGACCCAAAA+AGG 0.267221 6.2:-33235489 MS.gene09342:CDS
TTTCCTACTTTAGCTTGTTC+AGG 0.279784 6.2:+33232973 None:intergenic
TGCATTTACACCCTGTTTAT+CGG 0.290641 6.2:-33235403 MS.gene09342:CDS
CCTGAAGTTCCAATTGTTAC+TGG 0.294336 6.2:-33233883 MS.gene09342:CDS
ATCCTTCTCCCACGTCTCTT+TGG 0.296957 6.2:+33233677 None:intergenic
TTTGTTGCGTTGGACGAAAA+AGG 0.308114 6.2:-33234088 MS.gene09342:CDS
TTGCAGGGAAGTGTCCAAAA+AGG 0.313369 6.2:-33233965 MS.gene09342:CDS
AGTGATGATGGTGGTTGTTC+TGG 0.317361 6.2:-33236055 MS.gene09342:CDS
CCTTTGCACTTCACTGGAAA+TGG 0.317899 6.2:+33233832 None:intergenic
CATTAACTGCTGAAGGAATA+AGG 0.318241 6.2:-33235745 MS.gene09342:CDS
TGCTGAAGGAATAAGGAAAA+TGG 0.318497 6.2:-33235738 MS.gene09342:CDS
CCAGTAACAATTGGAACTTC+AGG 0.318979 6.2:+33233883 None:intergenic
AAACAACAACAATGACTTTA+CGG 0.325210 6.2:-33236305 MS.gene09342:CDS
AGACGTGGCAGAAGGATTAA+AGG 0.327759 6.2:-33233182 MS.gene09342:CDS
TTGTTAGGAAGAGTGATATT+AGG 0.334249 6.2:-33235652 MS.gene09342:CDS
TTATGAACACGGAGCCTAAC+TGG 0.336743 6.2:+33235503 None:intergenic
CGCAACAAAATCAAACATTC+TGG 0.341835 6.2:+33234102 None:intergenic
CGCGTGGTGAGGCACCTGTT+AGG 0.362850 6.2:-33232933 MS.gene09342:CDS
TGCTCCAAAGAAGAATAAAA+AGG 0.367722 6.2:-33233809 MS.gene09342:CDS
TGGCTAGCACTCTGAGACAT+AGG 0.369422 6.2:+33233208 None:intergenic
CCCACGTCTCTTTGGCTATC+GGG 0.373225 6.2:+33233685 None:intergenic
CATTGGTTGGAGTAGGTTCA+TGG 0.373380 6.2:+33235429 None:intergenic
TCTTTAATGTGGACTATTGT+GGG 0.382259 6.2:-33234053 MS.gene09342:CDS
GGAAGTAGATTCTAAGTTGA+TGG 0.394286 6.2:-33234031 MS.gene09342:CDS
AGTCTCCTTGATGCCCTAAC+AGG 0.395341 6.2:+33232919 None:intergenic
GTTGAGTTTCCAGTAACAAT+TGG 0.399158 6.2:+33233874 None:intergenic
TCCCACGTCTCTTTGGCTAT+CGG 0.401616 6.2:+33233684 None:intergenic
ATTGTCCATTGCCGCGACTT+TGG 0.403101 6.2:+33232797 None:intergenic
ATAAGAACTTGTCATATAAT+GGG 0.403187 6.2:-33235329 MS.gene09342:CDS
GGATGACATACAAAAGCTTC+AGG 0.411801 6.2:-33233920 MS.gene09342:CDS
TGGCTAGCATGCTGAGACAT+TGG 0.411899 6.2:+33233493 None:intergenic
AACATTTATCAAGATTAGAT+AGG 0.418319 6.2:-33235562 MS.gene09342:CDS
GGTACACCAGAACATGATTA+CGG 0.421572 6.2:-33236277 MS.gene09342:CDS
GATTATAGTGCTGGTGATAA+AGG 0.421954 6.2:-33236031 MS.gene09342:CDS
GGAGCACCTTTGCACTTCAC+TGG 0.432854 6.2:+33233826 None:intergenic
GTAGAACCGTAATCATGTTC+TGG 0.434784 6.2:+33236271 None:intergenic
GCTCAGAAGGGTGGATATCC+AGG 0.434908 6.2:-33235296 MS.gene09342:CDS
TGGCTAGCATGCTCAGACAT+GGG 0.435542 6.2:+33233391 None:intergenic
CAGTAACAATTGGAACTTCA+GGG 0.439435 6.2:+33233884 None:intergenic
GACGTGGGAGGAGGATCAAC+GGG 0.443295 6.2:-33233262 MS.gene09342:CDS
TGGCTAGCATGCTGAGACAT+GGG 0.445342 6.2:+33233289 None:intergenic
AGACGTGGGAGGAGGATCAA+AGG 0.446373 6.2:-33233467 MS.gene09342:CDS
TTCTTTAATGTGGACTATTG+TGG 0.447951 6.2:-33234054 MS.gene09342:CDS
GATATTAGGCGCAATGTTAA+CGG 0.449906 6.2:-33235638 MS.gene09342:CDS
GAAACATATCCGATCATTGT+TGG 0.455087 6.2:-33236229 MS.gene09342:CDS
TATAAGTACGGTAAGTGTAA+AGG 0.460291 6.2:-33235680 MS.gene09342:CDS
GGGATACATGGTGGCTCAGA+AGG 0.464555 6.2:-33235309 MS.gene09342:CDS
CGTAGTTGTTGGTGAGGAAA+TGG 0.465111 6.2:-33235780 MS.gene09342:CDS
CCGATCATTGTTGGGAGTTG+TGG 0.465753 6.2:-33236220 MS.gene09342:CDS
TTGATGGAGATTGCTCGATA+TGG 0.468688 6.2:-33234015 MS.gene09342:CDS
CGAGGCTGTTGAAATCTATA+CGG 0.472274 6.2:-33234369 MS.gene09342:CDS
TTGGCTATCGGGCTGAGACA+TGG 0.475904 6.2:+33233696 None:intergenic
GTAGATAAAGCACAGATTGA+TGG 0.478198 6.2:-33235368 MS.gene09342:CDS
TGATTACGGTTCTACGGATG+TGG 0.481654 6.2:-33236263 MS.gene09342:CDS
TTGGCTAGCATGCTCAGACA+TGG 0.487580 6.2:+33233390 None:intergenic
AAACATATCCGATCATTGTT+GGG 0.488608 6.2:-33236228 MS.gene09342:CDS
TGTTCTGGTGATTATAGTGC+TGG 0.489646 6.2:-33236040 MS.gene09342:CDS
GATGAAGGTGGAGGTGATGA+AGG 0.491454 6.2:-33235911 MS.gene09342:CDS
GCGTGGTGAGGCACCTGTTA+GGG 0.491694 6.2:-33232932 MS.gene09342:CDS
GAAGATATTCAAGCTGGGTC+GGG 0.494884 6.2:-33232630 MS.gene09342:CDS
AGACGTGGGAGAAGGATCAA+AGG 0.494945 6.2:-33233671 MS.gene09342:CDS
CGCAGATGAGTTGTTAGCAC+AGG 0.496005 6.2:+33234404 None:intergenic
AAGCTAAAGTAGGAAAGAAA+AGG 0.496295 6.2:-33232966 MS.gene09342:CDS
TAGCTTGTATGCTGATGTGC+TGG 0.499229 6.2:-33233941 MS.gene09342:CDS
GTGTAGGAAGATATTCAAGC+TGG 0.502504 6.2:-33232636 MS.gene09342:intron
GGTACTTACGTTCATATTCA+CGG 0.502731 6.2:+33233120 None:intergenic
TGGCTATCGGGCTGAGACAT+GGG 0.505485 6.2:+33233697 None:intergenic
GACGTGGCAGAAGGATTAAA+GGG 0.507003 6.2:-33233181 MS.gene09342:CDS
GTGAAAGAAGAGATTATGAA+AGG 0.507624 6.2:-33234329 MS.gene09342:CDS
GCAGTATGTATGCAACAAGC+AGG 0.508678 6.2:-33235600 MS.gene09342:CDS
GACGTGGGAGGAGGATCAAA+GGG 0.511280 6.2:-33233466 MS.gene09342:CDS
AAGAATACTCAAGGGAATAC+AGG 0.512005 6.2:-33236112 MS.gene09342:CDS
ATTCAAGCTGGGTCGGGAAG+CGG 0.513307 6.2:-33232624 MS.gene09342:CDS
TTCTTAGCGAACCCAACACC+TGG 0.515612 6.2:+33235278 None:intergenic
ATAAATTCATTAACTGCTGA+AGG 0.519495 6.2:-33235752 MS.gene09342:CDS
AAGGGTGGATATCCAGGTGT+TGG 0.520377 6.2:-33235290 MS.gene09342:CDS
AGAGGCCAAAGTCGCGGCAA+TGG 0.523523 6.2:-33232802 MS.gene09342:intron
TTGGCTAGCATGCTGAGACA+TGG 0.524354 6.2:+33233288 None:intergenic
GACGTGGGAGAAGGATCAAA+GGG 0.526228 6.2:-33233670 MS.gene09342:CDS
TAGGGCATCAAGGAGACTAA+TGG 0.526483 6.2:-33232914 MS.gene09342:CDS
CTGGCTATCAAGCTGAGACA+TGG 0.527241 6.2:+33233594 None:intergenic
ATCACATTCACAGTAGGTTC+AGG 0.528477 6.2:+33232600 None:intergenic
AGGGTGGATATCCAGGTGTT+GGG 0.529776 6.2:-33235289 MS.gene09342:CDS
GTGGAGGTGATGAAAGTGAA+GGG 0.532610 6.2:-33235889 MS.gene09342:CDS
GAAGATGATGACGTAGTTGT+TGG 0.534581 6.2:-33235791 MS.gene09342:CDS
GGAAGATATTCAAGCTGGGT+CGG 0.536191 6.2:-33232631 MS.gene09342:CDS
CTCGTACAAAGTGTCCAGTT+AGG 0.541961 6.2:-33235517 MS.gene09342:CDS
AGCCAGAAAGACGTGGGAGG+AGG 0.544096 6.2:-33233475 MS.gene09342:CDS
AGAACATGATTACGGTTCTA+CGG 0.545109 6.2:-33236269 MS.gene09342:CDS
CCACAACTCCCAACAATGAT+CGG 0.546136 6.2:+33236220 None:intergenic
ATTCCTGAACAAGCTAAAGT+AGG 0.547544 6.2:-33232976 MS.gene09342:CDS
AAGTCACATTCAACGACGTA+AGG 0.551272 6.2:+33232536 None:intergenic
TGGCTATCAAGCTGAGACAT+GGG 0.552374 6.2:+33233595 None:intergenic
TTGTCATATAATGGGATACA+TGG 0.555297 6.2:-33235321 MS.gene09342:CDS
GATGCTGATGATGTGAGTTA+TGG 0.557370 6.2:-33236145 MS.gene09342:CDS
AGCCAGAAAGACGTGGGAGA+AGG 0.560631 6.2:-33233577 MS.gene09342:CDS
AGCCAAAGAGACGTGGGAGA+AGG 0.560631 6.2:-33233679 MS.gene09342:CDS
TGTAAATGCACAACATTGGT+TGG 0.560698 6.2:+33235416 None:intergenic
GAAGAAGATGATACTGTGTC+AGG 0.566789 6.2:-33232771 MS.gene09342:CDS
GAAGATTGGTTTCTTTAATG+TGG 0.568882 6.2:-33234064 MS.gene09342:CDS
TTGTTGGTGAGGAAATGGTA+AGG 0.572827 6.2:-33235775 MS.gene09342:CDS
TACATGGTGGCTCAGAAGGG+TGG 0.573659 6.2:-33235305 MS.gene09342:CDS
GAAGGTGGAGGTGATGAAGG+TGG 0.573745 6.2:-33235908 MS.gene09342:CDS
TAGTCAAAGCGAGGTTGTCA+AGG 0.577221 6.2:-33233155 MS.gene09342:CDS
AGGCACCTGTTAGGGCATCA+AGG 0.577424 6.2:-33232924 MS.gene09342:CDS
GATGAAAGTCAAGGTGATGA+AGG 0.579998 6.2:-33235986 MS.gene09342:CDS
AGAAAGATGCTCAGTTCTTG+CGG 0.581337 6.2:+33233621 None:intergenic
TGTTTATCGGAAAATATTCG+AGG 0.581558 6.2:-33235390 MS.gene09342:CDS
AGACGTGGGAGGAGGATCAA+CGG 0.584580 6.2:-33233263 MS.gene09342:CDS
AGACGTGGGAGAAGAATCAA+AGG 0.585400 6.2:-33233365 MS.gene09342:CDS
GCCCGATAGCCAAAGAGACG+TGG 0.586320 6.2:-33233686 MS.gene09342:CDS
GATGAACGTGAAGGTGATGA+AGG 0.589312 6.2:-33235926 MS.gene09342:CDS
GATGAAGGTGAACGTGATGA+AGG 0.589312 6.2:-33235971 MS.gene09342:CDS
GGTGATAAAGGTGAAGATGA+TGG 0.589452 6.2:-33236019 MS.gene09342:CDS
CAGTATGTATGCAACAAGCA+GGG 0.591106 6.2:-33235599 MS.gene09342:CDS
GCATGCTAGCCAGAAAGACG+TGG 0.591586 6.2:-33233482 MS.gene09342:CDS
GCTTGATAGCCAGAAAGACG+TGG 0.594912 6.2:-33233584 MS.gene09342:CDS
GGGGATGAAAGTGAAGGTCA+TGG 0.595554 6.2:-33235869 MS.gene09342:CDS
CTTTAATGTGGACTATTGTG+GGG 0.606693 6.2:-33234052 MS.gene09342:CDS
GGTGGAGGTGATGAAGGTGG+AGG 0.609174 6.2:-33235905 MS.gene09342:CDS
TGAACCTACTGTGAATGTGA+TGG 0.609255 6.2:-33232598 MS.gene09342:CDS
AGAGACAATGAAAGTGATGA+TGG 0.611273 6.2:-33236067 MS.gene09342:CDS
GAACGTGAAGGTGATGAAGG+TGG 0.612174 6.2:-33235923 MS.gene09342:CDS
GATTTAAGAGGCCAAAGTCG+CGG 0.612533 6.2:-33232808 MS.gene09342:intron
GGATACATGGTGGCTCAGAA+GGG 0.612576 6.2:-33235308 MS.gene09342:CDS
CCATTTCCAGTGAAGTGCAA+AGG 0.615534 6.2:-33233832 MS.gene09342:CDS
TGTAGGAAGATATTCAAGCT+GGG 0.617274 6.2:-33232635 MS.gene09342:intron
TCTGCGTTGTCTTGAACGCG+AGG 0.617404 6.2:-33234387 MS.gene09342:CDS
GGTGGAGGTGATGAAAGTGA+AGG 0.618077 6.2:-33235890 MS.gene09342:CDS
GTAAGAAAATGTTCAAACTG+TGG 0.620533 6.2:-33233775 MS.gene09342:CDS
GAAAAGAAGAACGCGTGGTG+AGG 0.625556 6.2:-33232944 MS.gene09342:CDS
ACTTCCATCACATTCACAGT+AGG 0.626348 6.2:+33232594 None:intergenic
AGGGTGTAAATGCACAACAT+TGG 0.627835 6.2:+33235412 None:intergenic
GCAGATGAGTTGTTAGCACA+GGG 0.630444 6.2:+33234405 None:intergenic
CGTGAAGGTGATGAAGGTGG+AGG 0.631191 6.2:-33235920 MS.gene09342:CDS
TGCACAACATTGGTTGGAGT+AGG 0.634569 6.2:+33235422 None:intergenic
TGGAGGTGATGAAAGTGAAG+GGG 0.634863 6.2:-33235888 MS.gene09342:CDS
TGTTACTGGAAACTCAACAA+TGG 0.640006 6.2:-33233869 MS.gene09342:CDS
AGTGAAGGGGATGAAAGTGA+AGG 0.643059 6.2:-33235875 MS.gene09342:CDS
CCCGATAGCCAAAGAGACGT+GGG 0.644492 6.2:-33233685 MS.gene09342:CDS
AGTATGTATGCAACAAGCAG+GGG 0.649375 6.2:-33235598 MS.gene09342:CDS
TGATGACGTAGTTGTTGGTG+AGG 0.651153 6.2:-33235786 MS.gene09342:CDS
AAAAGGAAAAGAAGAACGCG+TGG 0.668324 6.2:-33232949 MS.gene09342:CDS
TCATATAATGGGATACATGG+TGG 0.669224 6.2:-33235318 MS.gene09342:CDS
TTAACGGTGAGATTGTAATG+AGG 0.680367 6.2:-33235622 MS.gene09342:CDS
GACGTGGGAGAAGAATCAAA+GGG 0.681507 6.2:-33233364 MS.gene09342:CDS
GAATAAGAACATTGACAGTG+AGG 0.685020 6.2:-33233010 MS.gene09342:CDS
AGTAAAGTTGATGAAAGTGA+AGG 0.685486 6.2:-33235845 MS.gene09342:CDS
AGGTGTTGCACTGAGTGTGA+AGG 0.686205 6.2:-33234309 MS.gene09342:CDS
AAAGGGAGGTAGTCAAAGCG+AGG 0.690394 6.2:-33233164 MS.gene09342:CDS
CTTGATAGCCAGAAAGACGT+GGG 0.690821 6.2:-33233583 MS.gene09342:CDS
CTGGAAATGGATCACGTACG+TGG 0.691151 6.2:+33233845 None:intergenic
GCTAGCCAGAAAGACGTGGG+AGG 0.694454 6.2:-33233478 MS.gene09342:CDS
CATGCTAGCCAGAAAGACGT+GGG 0.697336 6.2:-33233481 MS.gene09342:CDS
GTGGCAGAAGGATTAAAGGG+AGG 0.699976 6.2:-33233178 MS.gene09342:CDS
GTGGGAGGAGGATCAACGGG+AGG 0.701804 6.2:-33233259 MS.gene09342:CDS
GACAATGAAAGTGATGATGG+TGG 0.702934 6.2:-33236064 MS.gene09342:CDS
GTGGGAGGAGGATCAAAGGG+AGG 0.703873 6.2:-33233463 MS.gene09342:CDS
ATTGATGGTCTTCAGTCACA+CGG 0.708259 6.2:-33235353 MS.gene09342:CDS
GTGGGAGAAGGATCAAAGGG+AGG 0.709029 6.2:-33233667 MS.gene09342:CDS
AGTGAAGGTGATGAAAGTGA+AGG 0.717258 6.2:-33235830 MS.gene09342:CDS
GGTGAAAGTGATGAAAGTGA+AGG 0.717258 6.2:-33235950 MS.gene09342:CDS
AGTGAATGTGATGAAAGTCA+AGG 0.717258 6.2:-33235995 MS.gene09342:CDS
GTGGGAGAAGAATCAAAGGG+AGG 0.717418 6.2:-33233361 MS.gene09342:CDS
ACTTTGTACGAGTGAGACGT+CGG 0.726283 6.2:+33235528 None:intergenic
AGTGAAGGTGATGAACGTGA+AGG 0.728116 6.2:-33235935 MS.gene09342:CDS
CAGATGAGTTGTTAGCACAG+GGG 0.781573 6.2:+33234406 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAATTTTTATTATAAGTA+CGG - chr6.2:33233163-33233182 MS.gene09342:CDS 10.0%
!! AAACAATATAAACTTATATG+TGG - chr6.2:33233921-33233940 MS.gene09342:CDS 15.0%
!! AACAATATAAACTTATATGT+GGG - chr6.2:33233922-33233941 MS.gene09342:CDS 15.0%
!! AAATCATAAAGAGTTATGTT+AGG - chr6.2:33234326-33234345 MS.gene09342:CDS 20.0%
!! AACATTTATCAAGATTAGAT+AGG - chr6.2:33233293-33233312 MS.gene09342:CDS 20.0%
!! AATAAGAACTTGTCATATAA+TGG - chr6.2:33233525-33233544 MS.gene09342:CDS 20.0%
!! ATAAGAACTTGTCATATAAT+GGG - chr6.2:33233526-33233545 MS.gene09342:CDS 20.0%
!! CTTAAAAAACAACATATATG+AGG + chr6.2:33236008-33236027 None:intergenic 20.0%
!!! CTCATATATGTTGTTTTTTA+AGG - chr6.2:33236006-33236025 MS.gene09342:CDS 20.0%
!!! TGGATAATTTTTGATTTAAG+AGG - chr6.2:33236035-33236054 MS.gene09342:CDS 20.0%
! AAACAACAACAATGACTTTA+CGG - chr6.2:33232550-33232569 MS.gene09342:CDS 25.0%
! AAATTGAGAAGTTAGTCAAA+AGG + chr6.2:33235819-33235838 None:intergenic 25.0%
! ACTTAACATTCAGATAGTTT+AGG + chr6.2:33233670-33233689 None:intergenic 25.0%
! ATAAATTCATTAACTGCTGA+AGG - chr6.2:33233103-33233122 MS.gene09342:intron 25.0%
! ATATATGAGGTCAAGAATAT+GGG + chr6.2:33235995-33236014 None:intergenic 25.0%
! ATATGAGAACAAAGAATTGT+GGG - chr6.2:33234234-33234253 MS.gene09342:intron 25.0%
! ATTACGTTTAGACTCAAAAT+TGG + chr6.2:33236160-33236179 None:intergenic 25.0%
! CCAACAATGTGTTTAAATAT+AGG - chr6.2:33235756-33235775 MS.gene09342:CDS 25.0%
! CCTATATTTAAACACATTGT+TGG + chr6.2:33235759-33235778 None:intergenic 25.0%
! CCTTCAACACAAAAAAATAT+GGG + chr6.2:33234713-33234732 None:intergenic 25.0%
! CTTAACATTCAGATAGTTTA+GGG + chr6.2:33233669-33233688 None:intergenic 25.0%
! TCCTTCAACACAAAAAAATA+TGG + chr6.2:33234714-33234733 None:intergenic 25.0%
!! AAAAATGTGTGCTGTTATTA+AGG - chr6.2:33233625-33233644 MS.gene09342:CDS 25.0%
!! AATTTTACGAAGAATACTCA+AGG - chr6.2:33232734-33232753 MS.gene09342:intron 25.0%
!! AGCAATGTACTCTAATTTTA+CGG - chr6.2:33234135-33234154 MS.gene09342:intron 25.0%
!! ATGTGTTTACAAATTTTTGC+AGG - chr6.2:33234874-33234893 MS.gene09342:intron 25.0%
!! ATTTTACGAAGAATACTCAA+GGG - chr6.2:33232735-33232754 MS.gene09342:intron 25.0%
!! GAACATTTTCTTACAAACTT+TGG + chr6.2:33235074-33235093 None:intergenic 25.0%
!! TGTGTTTACAAATTTTTGCA+GGG - chr6.2:33234875-33234894 MS.gene09342:intron 25.0%
!! TTCTTTGTTCTCATATGTTT+TGG + chr6.2:33234230-33234249 None:intergenic 25.0%
!! TTGACTAACTTCTCAATTTT+TGG - chr6.2:33235820-33235839 MS.gene09342:CDS 25.0%
!!! AAGAATTTAGCTTTTTTGGA+AGG - chr6.2:33234103-33234122 MS.gene09342:CDS 25.0%
!!! AAGTAAAAAGCATTTCTCAT+TGG + chr6.2:33236193-33236212 None:intergenic 25.0%
!!! ACGTTTGAAATGTCTATTTT+GGG - chr6.2:33233739-33233758 MS.gene09342:CDS 25.0%
!!! AGATCAGATTATTTCTACTT+TGG - chr6.2:33233776-33233795 MS.gene09342:CDS 25.0%
!!! GTTGTTTTTTAAGGATAACA+TGG - chr6.2:33236015-33236034 MS.gene09342:CDS 25.0%
!!! TGTCAAGAATTTAGCTTTTT+TGG - chr6.2:33234099-33234118 MS.gene09342:CDS 25.0%
AAACATATCCGATCATTGTT+GGG - chr6.2:33232627-33232646 MS.gene09342:CDS 30.0%
AAGAGTTATGTTAGGAAGAA+AGG - chr6.2:33234334-33234353 MS.gene09342:CDS 30.0%
AAGCTAAAGTAGGAAAGAAA+AGG - chr6.2:33235889-33235908 MS.gene09342:CDS 30.0%
AGAAATAACAAACTTGTAGC+TGG - chr6.2:33234406-33234425 MS.gene09342:CDS 30.0%
CAAATATAACTGTTTGTGAG+TGG + chr6.2:33233880-33233899 None:intergenic 30.0%
CACTCACAAACAGTTATATT+TGG - chr6.2:33233878-33233897 MS.gene09342:CDS 30.0%
CATATATGAGGTCAAGAATA+TGG + chr6.2:33235996-33236015 None:intergenic 30.0%
CATATGAGAACAAAGAATTG+TGG - chr6.2:33234233-33234252 MS.gene09342:intron 30.0%
GAAGTTGACAAAATATCTTG+AGG - chr6.2:33234600-33234619 MS.gene09342:intron 30.0%
GAATATTCACAAAAGGAATG+TGG + chr6.2:33233704-33233723 None:intergenic 30.0%
GTAAGAAAATGTTCAAACTG+TGG - chr6.2:33235080-33235099 MS.gene09342:intron 30.0%
GTGAAAGAAGAGATTATGAA+AGG - chr6.2:33234526-33234545 MS.gene09342:intron 30.0%
TATAAGTACGGTAAGTGTAA+AGG - chr6.2:33233175-33233194 MS.gene09342:CDS 30.0%
TGCTCCAAAGAAGAATAAAA+AGG - chr6.2:33235046-33235065 MS.gene09342:intron 30.0%
TGTTTATCGGAAAATATTCG+AGG - chr6.2:33233465-33233484 MS.gene09342:CDS 30.0%
TTGACAAAATATCTTGAGGA+AGG - chr6.2:33234604-33234623 MS.gene09342:intron 30.0%
TTGTTAGGAAGAGTGATATT+AGG - chr6.2:33233203-33233222 MS.gene09342:CDS 30.0%
! AACAATGACTTTACGGATTT+TGG - chr6.2:33232557-33232576 MS.gene09342:CDS 30.0%
! AATGTACTCTAATTTTACGG+AGG - chr6.2:33234138-33234157 MS.gene09342:intron 30.0%
! ACAACATATCTACCCTTTTT+GGG + chr6.2:33233382-33233401 None:intergenic 30.0%
! ACCAGTTTTCTAGATTGTAT+GGG - chr6.2:33233950-33233969 MS.gene09342:CDS 30.0%
! AGGATGAATTTGAAGAGTTT+TGG - chr6.2:33234158-33234177 MS.gene09342:intron 30.0%
! CAGAACATGTCTTTTTCTTA+TGG + chr6.2:33235421-33235440 None:intergenic 30.0%
! CAGAACATGTCTTTTTCTTT+GGG + chr6.2:33235625-33235644 None:intergenic 30.0%
! CGAATATTTTCCGATAAACA+GGG + chr6.2:33233465-33233484 None:intergenic 30.0%
! CTTTTTACTTGTGTTTGTGT+AGG - chr6.2:33236203-33236222 MS.gene09342:CDS 30.0%
! GATGAATTTGAAGAGTTTTG+GGG - chr6.2:33234160-33234179 MS.gene09342:intron 30.0%
! GGATGAATTTGAAGAGTTTT+GGG - chr6.2:33234159-33234178 MS.gene09342:intron 30.0%
! TCGAATATTTTCCGATAAAC+AGG + chr6.2:33233466-33233485 None:intergenic 30.0%
! TCTTTAATGTGGACTATTGT+GGG - chr6.2:33234802-33234821 MS.gene09342:intron 30.0%
! TTCTTTAATGTGGACTATTG+TGG - chr6.2:33234801-33234820 MS.gene09342:intron 30.0%
! TTGTCATATAATGGGATACA+TGG - chr6.2:33233534-33233553 MS.gene09342:CDS 30.0%
!! AATGTTTGATTTTGTTGCGT+TGG - chr6.2:33234757-33234776 MS.gene09342:intron 30.0%
!! AGTAAAGTTGATGAAAGTGA+AGG - chr6.2:33233010-33233029 MS.gene09342:CDS 30.0%
!! ATGAATTTGAAGAGTTTTGG+GGG - chr6.2:33234161-33234180 MS.gene09342:intron 30.0%
!! ATTTCTGCACAATTTTGAAG+AGG - chr6.2:33234369-33234388 MS.gene09342:CDS 30.0%
!! GAAGATTGGTTTCTTTAATG+TGG - chr6.2:33234791-33234810 MS.gene09342:intron 30.0%
!! GACGTTTGAAATGTCTATTT+TGG - chr6.2:33233738-33233757 MS.gene09342:CDS 30.0%
!!! AGTGTAAAGGTTTTGTTGTT+AGG - chr6.2:33233188-33233207 MS.gene09342:CDS 30.0%
!!! CCCATATTTTTTTGTGTTGA+AGG - chr6.2:33234710-33234729 MS.gene09342:intron 30.0%
!!! GTTGTGTCTATTTTTGAAGA+GGG - chr6.2:33233397-33233416 MS.gene09342:CDS 30.0%
!!! TGTTGTGTCTATTTTTGAAG+AGG - chr6.2:33233396-33233415 MS.gene09342:CDS 30.0%
!!! TTGTAGCTGGTTTTAAATTC+AGG - chr6.2:33234419-33234438 MS.gene09342:intron 30.0%
AAGAATACTCAAGGGAATAC+AGG - chr6.2:33232743-33232762 MS.gene09342:CDS 35.0%
AGAACATGATTACGGTTCTA+CGG - chr6.2:33232586-33232605 MS.gene09342:CDS 35.0%
AGAGACAATGAAAGTGATGA+TGG - chr6.2:33232788-33232807 MS.gene09342:CDS 35.0%
AGATTACTTGTGCAGTAAGT+AGG + chr6.2:33235793-33235812 None:intergenic 35.0%
AGTGAATGTGATGAAAGTCA+AGG - chr6.2:33232860-33232879 MS.gene09342:intron 35.0%
AGTGGCAGAATATTCACAAA+AGG + chr6.2:33233711-33233730 None:intergenic 35.0%
ATTCCTGAACAAGCTAAAGT+AGG - chr6.2:33235879-33235898 MS.gene09342:CDS 35.0%
CACAAAAAAATATGGGAGCA+TGG + chr6.2:33234706-33234725 None:intergenic 35.0%
CAGTAACAATTGGAACTTCA+GGG + chr6.2:33234974-33234993 None:intergenic 35.0%
CATTAACTGCTGAAGGAATA+AGG - chr6.2:33233110-33233129 MS.gene09342:intron 35.0%
CGCAACAAAATCAAACATTC+TGG + chr6.2:33234756-33234775 None:intergenic 35.0%
GAAACATATCCGATCATTGT+TGG - chr6.2:33232626-33232645 MS.gene09342:CDS 35.0%
GAATAAGAACATTGACAGTG+AGG - chr6.2:33235845-33235864 MS.gene09342:CDS 35.0%
GAATATTCTGCCACTGATAA+CGG - chr6.2:33233716-33233735 MS.gene09342:CDS 35.0%
GATATTAGGCGCAATGTTAA+CGG - chr6.2:33233217-33233236 MS.gene09342:CDS 35.0%
GCATCTGAATAAGAATGCTA+TGG - chr6.2:33234072-33234091 MS.gene09342:CDS 35.0%
GGTACTTACGTTCATATTCA+CGG + chr6.2:33235738-33235757 None:intergenic 35.0%
GTAGATAAAGCACAGATTGA+TGG - chr6.2:33233487-33233506 MS.gene09342:CDS 35.0%
GTTCATAACAGACCCAAAAA+GGG - chr6.2:33233367-33233386 MS.gene09342:CDS 35.0%
GTTGAGTTTCCAGTAACAAT+TGG + chr6.2:33234984-33235003 None:intergenic 35.0%
TCCCATACAATCTAGAAAAC+TGG + chr6.2:33233954-33233973 None:intergenic 35.0%
TGCATTTACACCCTGTTTAT+CGG - chr6.2:33233452-33233471 MS.gene09342:CDS 35.0%
TGCTGAAGGAATAAGGAAAA+TGG - chr6.2:33233117-33233136 MS.gene09342:intron 35.0%
TGTAAATGCACAACATTGGT+TGG + chr6.2:33233442-33233461 None:intergenic 35.0%
TGTAGGAAGATATTCAAGCT+GGG - chr6.2:33236220-33236239 MS.gene09342:CDS 35.0%
TGTTACTGGAAACTCAACAA+TGG - chr6.2:33234986-33235005 MS.gene09342:intron 35.0%
TGTTCATAACAGACCCAAAA+AGG - chr6.2:33233366-33233385 MS.gene09342:CDS 35.0%
TTAACGGTGAGATTGTAATG+AGG - chr6.2:33233233-33233252 MS.gene09342:CDS 35.0%
! AAAGCATTTCTCATTGGACT+GGG + chr6.2:33236187-33236206 None:intergenic 35.0%
! ATGTGTGCTGTTATTAAGGA+TGG - chr6.2:33233629-33233648 MS.gene09342:CDS 35.0%
! CACAACATATCTACCCTTTT+TGG + chr6.2:33233383-33233402 None:intergenic 35.0%
! CAGCACATGTCTTTTTCTTT+GGG + chr6.2:33235523-33235542 None:intergenic 35.0%
! CTTTAATGTGGACTATTGTG+GGG - chr6.2:33234803-33234822 MS.gene09342:intron 35.0%
! GACCAGTTTTCTAGATTGTA+TGG - chr6.2:33233949-33233968 MS.gene09342:CDS 35.0%
! GCAGAACATGTCTTTTTCTT+TGG + chr6.2:33235422-33235441 None:intergenic 35.0%
! GGAAGTAGATTCTAAGTTGA+TGG - chr6.2:33234824-33234843 MS.gene09342:intron 35.0%
! GGTGCCTTTTTATTCTTCTT+TGG + chr6.2:33235053-33235072 None:intergenic 35.0%
! TCATATAATGGGATACATGG+TGG - chr6.2:33233537-33233556 MS.gene09342:CDS 35.0%
!! AAAAGCATTTCTCATTGGAC+TGG + chr6.2:33236188-33236207 None:intergenic 35.0%
!! AAATGTCTATTTTGGGCAGA+TGG - chr6.2:33233746-33233765 MS.gene09342:CDS 35.0%
!! AATTTTGAAGAGGCAATGAG+AGG - chr6.2:33234379-33234398 MS.gene09342:CDS 35.0%
!! AGTTATATTTGGTGCTGCAT+TGG - chr6.2:33233889-33233908 MS.gene09342:CDS 35.0%
!! GATTATAGTGCTGGTGATAA+AGG - chr6.2:33232824-33232843 MS.gene09342:intron 35.0%
!! TTATTTCTACTTTGGCGATG+TGG - chr6.2:33233784-33233803 MS.gene09342:CDS 35.0%
!! TTTCCTACTTTAGCTTGTTC+AGG + chr6.2:33235885-33235904 None:intergenic 35.0%
!! TTTTGGGTCTGTTATGAACA+CGG + chr6.2:33233366-33233385 None:intergenic 35.0%
!!! TCATATGTTTTGGTAACCCA+TGG + chr6.2:33234220-33234239 None:intergenic 35.0%
!!! TGAATTTGAAGAGTTTTGGG+GGG - chr6.2:33234162-33234181 MS.gene09342:intron 35.0%
AAAAAGACGTTCAGTGTCTG+CGG + chr6.2:33235135-33235154 None:intergenic 40.0%
AAAAGGAAAAGAAGAACGCG+TGG - chr6.2:33235906-33235925 MS.gene09342:CDS 40.0%
AAAGGAATGTGGATCAGTTG+AGG + chr6.2:33233693-33233712 None:intergenic 40.0%
ACAAAATCACCAACGGATAG+TGG + chr6.2:33233844-33233863 None:intergenic 40.0%
ACTTCCATCACATTCACAGT+AGG + chr6.2:33236264-33236283 None:intergenic 40.0%
AGAAAGATGCTCAGTTCTTG+CGG + chr6.2:33235237-33235256 None:intergenic 40.0%
AGGGTGTAAATGCACAACAT+TGG + chr6.2:33233446-33233465 None:intergenic 40.0%
AGTATGTATGCAACAAGCAG+GGG - chr6.2:33233257-33233276 MS.gene09342:CDS 40.0%
AGTGAAGGTGATGAAAGTGA+AGG - chr6.2:33233025-33233044 MS.gene09342:intron 40.0%
ATCACATTCACAGTAGGTTC+AGG + chr6.2:33236258-33236277 None:intergenic 40.0%
CAGGAAATTTGAATCTCGAG+GGG - chr6.2:33234678-33234697 MS.gene09342:intron 40.0%
CAGTATGTATGCAACAAGCA+GGG - chr6.2:33233256-33233275 MS.gene09342:CDS 40.0%
CCAAAAGCAGTTGTAACAGA+TGG - chr6.2:33233983-33234002 MS.gene09342:CDS 40.0%
CCAGTAACAATTGGAACTTC+AGG + chr6.2:33234975-33234994 None:intergenic 40.0%
CCTGAAGTTCCAATTGTTAC+TGG - chr6.2:33234972-33234991 MS.gene09342:intron 40.0%
CGAGGCTGTTGAAATCTATA+CGG - chr6.2:33234486-33234505 MS.gene09342:intron 40.0%
GAACAAATACCACTATCCGT+TGG - chr6.2:33233832-33233851 MS.gene09342:CDS 40.0%
GAAGAAGATGATACTGTGTC+AGG - chr6.2:33236084-33236103 MS.gene09342:CDS 40.0%
GATGAAAGTCAAGGTGATGA+AGG - chr6.2:33232869-33232888 MS.gene09342:intron 40.0%
GCAGGAAATTTGAATCTCGA+GGG - chr6.2:33234677-33234696 MS.gene09342:intron 40.0%
GGATGACATACAAAAGCTTC+AGG - chr6.2:33234935-33234954 MS.gene09342:intron 40.0%
GGTACACCAGAACATGATTA+CGG - chr6.2:33232578-33232597 MS.gene09342:CDS 40.0%
GGTGAAAGTGATGAAAGTGA+AGG - chr6.2:33232905-33232924 MS.gene09342:intron 40.0%
GGTGATAAAGGTGAAGATGA+TGG - chr6.2:33232836-33232855 MS.gene09342:intron 40.0%
GTAGAACCGTAATCATGTTC+TGG + chr6.2:33232587-33232606 None:intergenic 40.0%
GTGAAGGAAAAAGAAGTGAG+TGG - chr6.2:33234562-33234581 MS.gene09342:intron 40.0%
GTGTAGGAAGATATTCAAGC+TGG - chr6.2:33236219-33236238 MS.gene09342:CDS 40.0%
TACCTGCATGACGATTTCTT+TGG - chr6.2:33234265-33234284 MS.gene09342:intron 40.0%
TGAACCTACTGTGAATGTGA+TGG - chr6.2:33236257-33236276 MS.gene09342:CDS 40.0%
TGCAGGAAATTTGAATCTCG+AGG - chr6.2:33234676-33234695 MS.gene09342:intron 40.0%
TGTTCTGGTGATTATAGTGC+TGG - chr6.2:33232815-33232834 MS.gene09342:intron 40.0%
TTGATGGAGATTGCTCGATA+TGG - chr6.2:33234840-33234859 MS.gene09342:intron 40.0%
TTTCAAACGTCCGTTATCAG+TGG + chr6.2:33233729-33233748 None:intergenic 40.0%
TTTGTTGCGTTGGACGAAAA+AGG - chr6.2:33234767-33234786 MS.gene09342:intron 40.0%
! AGCATACAAGCTACCCTTTT+TGG + chr6.2:33234907-33234926 None:intergenic 40.0%
! ATTCTTCTCCCACGTCTTTT+TGG + chr6.2:33235487-33235506 None:intergenic 40.0%
! ATTGATGGTCTTCAGTCACA+CGG - chr6.2:33233502-33233521 MS.gene09342:CDS 40.0%
! CCATCTGTTACAACTGCTTT+TGG + chr6.2:33233986-33234005 None:intergenic 40.0%
! GAAGATGATGACGTAGTTGT+TGG - chr6.2:33233064-33233083 MS.gene09342:intron 40.0%
! GATGCTGATGATGTGAGTTA+TGG - chr6.2:33232710-33232729 MS.gene09342:intron 40.0%
! GCAGCACATGTCTTTTTCTT+TGG + chr6.2:33235524-33235543 None:intergenic 40.0%
! TAACCCATGGATTGTTCTCA+AGG + chr6.2:33234207-33234226 None:intergenic 40.0%
! TTGTTGGTGAGGAAATGGTA+AGG - chr6.2:33233080-33233099 MS.gene09342:intron 40.0%
!! AGATGGTGATGGTTCTATGA+GGG - chr6.2:33234000-33234019 MS.gene09342:CDS 40.0%
!! GACAATGAAAGTGATGATGG+TGG - chr6.2:33232791-33232810 MS.gene09342:CDS 40.0%
!!! TATCCGTTGGTGATTTTGTC+TGG - chr6.2:33233845-33233864 MS.gene09342:CDS 40.0%
ACTTTGTACGAGTGAGACGT+CGG + chr6.2:33233330-33233349 None:intergenic 45.0%
AGACGTGGCAGAAGGATTAA+AGG - chr6.2:33235673-33235692 MS.gene09342:CDS 45.0%
AGACGTGGGAGAAGAATCAA+AGG - chr6.2:33235490-33235509 MS.gene09342:CDS 45.0%
AGTGAAGGGGATGAAAGTGA+AGG - chr6.2:33232980-33232999 MS.gene09342:CDS 45.0%
AGTGAAGGTGATGAACGTGA+AGG - chr6.2:33232920-33232939 MS.gene09342:CDS 45.0%
ATCGCCTTGAGAACAATCCA+TGG - chr6.2:33234200-33234219 MS.gene09342:intron 45.0%
CACCAAAGAAATCGTCATGC+AGG + chr6.2:33234270-33234289 None:intergenic 45.0%
CAGATGAGTTGTTAGCACAG+GGG + chr6.2:33234452-33234471 None:intergenic 45.0%
CAGCAATTCAGTGTTCTTGC+AGG - chr6.2:33234659-33234678 MS.gene09342:intron 45.0%
CAGCCAGACAAAATCACCAA+CGG + chr6.2:33233851-33233870 None:intergenic 45.0%
CATGCTAGCCAAAAAGACGT+GGG - chr6.2:33235476-33235495 MS.gene09342:CDS 45.0%
CCACAACTCCCAACAATGAT+CGG + chr6.2:33232638-33232657 None:intergenic 45.0%
CCATTTCCAGTGAAGTGCAA+AGG - chr6.2:33235023-33235042 MS.gene09342:intron 45.0%
CCTTTGCACTTCACTGGAAA+TGG + chr6.2:33235026-33235045 None:intergenic 45.0%
CTGCATGACGATTTCTTTGG+TGG - chr6.2:33234268-33234287 MS.gene09342:intron 45.0%
GAAGATATTCAAGCTGGGTC+GGG - chr6.2:33236225-33236244 MS.gene09342:CDS 45.0%
GACGTGGCAGAAGGATTAAA+GGG - chr6.2:33235674-33235693 MS.gene09342:CDS 45.0%
GACGTGGGAGAAGAATCAAA+GGG - chr6.2:33235491-33235510 MS.gene09342:CDS 45.0%
GATGAACGTGAAGGTGATGA+AGG - chr6.2:33232929-33232948 MS.gene09342:CDS 45.0%
GATGAAGGTGAACGTGATGA+AGG - chr6.2:33232884-33232903 MS.gene09342:intron 45.0%
GATTTAAGAGGCCAAAGTCG+CGG - chr6.2:33236047-33236066 MS.gene09342:CDS 45.0%
GCAGATGAGTTGTTAGCACA+GGG + chr6.2:33234453-33234472 None:intergenic 45.0%
GCAGTATGTATGCAACAAGC+AGG - chr6.2:33233255-33233274 MS.gene09342:CDS 45.0%
GCAGTTGTAACAGATGGTGA+TGG - chr6.2:33233989-33234008 MS.gene09342:CDS 45.0%
GGAAGATATTCAAGCTGGGT+CGG - chr6.2:33236224-33236243 MS.gene09342:CDS 45.0%
GTGGAGGTGATGAAAGTGAA+GGG - chr6.2:33232966-33232985 MS.gene09342:CDS 45.0%
TAGTCAAAGCGAGGTTGTCA+AGG - chr6.2:33235700-33235719 MS.gene09342:CDS 45.0%
TCGCCTTGAGAACAATCCAT+GGG - chr6.2:33234201-33234220 MS.gene09342:intron 45.0%
TGATTACGGTTCTACGGATG+TGG - chr6.2:33232592-33232611 MS.gene09342:CDS 45.0%
TGGACGAAAAAGGCGAAGAT+TGG - chr6.2:33234777-33234796 MS.gene09342:intron 45.0%
TGGAGGTGATGAAAGTGAAG+GGG - chr6.2:33232967-33232986 MS.gene09342:CDS 45.0%
TGGCTATCAAGCTGAGACAT+GGG + chr6.2:33235263-33235282 None:intergenic 45.0%
TTATGAACACGGAGCCTAAC+TGG + chr6.2:33233355-33233374 None:intergenic 45.0%
TTCTATGAGGGAGGCGATAA+AGG - chr6.2:33234012-33234031 MS.gene09342:CDS 45.0%
! AGTGTCTGCGGAACATTTTC+TGG + chr6.2:33235123-33235142 None:intergenic 45.0%
! ATCCTTCTGCCACGTCTTTT+TGG + chr6.2:33235670-33235689 None:intergenic 45.0%
! CATTGGTTGGAGTAGGTTCA+TGG + chr6.2:33233429-33233448 None:intergenic 45.0%
! CGTAGTTGTTGGTGAGGAAA+TGG - chr6.2:33233075-33233094 MS.gene09342:intron 45.0%
! CTCGTACAAAGTGTCCAGTT+AGG - chr6.2:33233338-33233357 MS.gene09342:CDS 45.0%
! CTTGATAGCCAGAAAGACGT+GGG - chr6.2:33235272-33235291 MS.gene09342:CDS 45.0%
! TAGCTTGTATGCTGATGTGC+TGG - chr6.2:33234914-33234933 MS.gene09342:intron 45.0%
! TAGGGCATCAAGGAGACTAA+TGG - chr6.2:33235941-33235960 MS.gene09342:CDS 45.0%
! TGATGACGTAGTTGTTGGTG+AGG - chr6.2:33233069-33233088 MS.gene09342:intron 45.0%
! TGCACAACATTGGTTGGAGT+AGG + chr6.2:33233436-33233455 None:intergenic 45.0%
!! AGTGATGATGGTGGTTGTTC+TGG - chr6.2:33232800-33232819 MS.gene09342:CDS 45.0%
!! ATTTGGTGCTGCATTGGTGA+TGG - chr6.2:33233895-33233914 MS.gene09342:CDS 45.0%
!! CAGATGGTGATGGTTCTATG+AGG - chr6.2:33233999-33234018 MS.gene09342:CDS 45.0%
!! TGCAGGGAAGTGTCCAAAAA+GGG - chr6.2:33234891-33234910 MS.gene09342:intron 45.0%
!! TTGCAGGGAAGTGTCCAAAA+AGG - chr6.2:33234890-33234909 MS.gene09342:intron 45.0%
AAAGGGAGGTAGTCAAAGCG+AGG - chr6.2:33235691-33235710 MS.gene09342:CDS 50.0%
AAGGGTGGATATCCAGGTGT+TGG - chr6.2:33233565-33233584 MS.gene09342:CDS 50.0%
AGACGTGGGAGAAGGATCAA+AGG - chr6.2:33235184-33235203 MS.gene09342:intron 50.0%
AGCCAAAAAGACGTGGCAGA+AGG - chr6.2:33235665-33235684 MS.gene09342:CDS 50.0%
AGGGTGGATATCCAGGTGTT+GGG - chr6.2:33233566-33233585 MS.gene09342:CDS 50.0%
AGTCTCCTTGATGCCCTAAC+AGG + chr6.2:33235939-33235958 None:intergenic 50.0%
ATCCTTCTCCCACGTCTCTT+TGG + chr6.2:33235181-33235200 None:intergenic 50.0%
ATCCTTCTCCCACGTCTTTC+TGG + chr6.2:33235283-33235302 None:intergenic 50.0%
ATTGTCCATTGCCGCGACTT+TGG + chr6.2:33236061-33236080 None:intergenic 50.0%
CATAGACGATGACGCGTACT+TGG + chr6.2:33234046-33234065 None:intergenic 50.0%
CATGCTAGCCAGAAAGACGT+GGG - chr6.2:33235374-33235393 MS.gene09342:CDS 50.0%
CCGATCATTGTTGGGAGTTG+TGG - chr6.2:33232635-33232654 MS.gene09342:intron 50.0%
CGCAGATGAGTTGTTAGCAC+AGG + chr6.2:33234454-33234473 None:intergenic 50.0%
CGCGTCATCGTCTATGTTCT+TGG - chr6.2:33234050-33234069 MS.gene09342:CDS 50.0%
CTGGAAATGGATCACGTACG+TGG + chr6.2:33235013-33235032 None:intergenic 50.0%
CTGGCTATCAAGCTGAGACA+TGG + chr6.2:33235264-33235283 None:intergenic 50.0%
GAAAAGAAGAACGCGTGGTG+AGG - chr6.2:33235911-33235930 MS.gene09342:CDS 50.0%
GAACGTGAAGGTGATGAAGG+TGG - chr6.2:33232932-33232951 MS.gene09342:CDS 50.0%
GACGTGGGAGAAGGATCAAA+GGG - chr6.2:33235185-33235204 MS.gene09342:intron 50.0%
GAGTGCTAGCCAAAAAGACG+TGG - chr6.2:33235658-33235677 MS.gene09342:CDS 50.0%
GATGAAGGTGGAGGTGATGA+AGG - chr6.2:33232944-33232963 MS.gene09342:CDS 50.0%
GCATGCTAGCCAAAAAGACG+TGG - chr6.2:33235475-33235494 MS.gene09342:CDS 50.0%
GGATACATGGTGGCTCAGAA+GGG - chr6.2:33233547-33233566 MS.gene09342:CDS 50.0%
GGGGATGAAAGTGAAGGTCA+TGG - chr6.2:33232986-33233005 MS.gene09342:CDS 50.0%
GGTGGAGGTGATGAAAGTGA+AGG - chr6.2:33232965-33232984 MS.gene09342:CDS 50.0%
GTGGCAGAAGGATTAAAGGG+AGG - chr6.2:33235677-33235696 MS.gene09342:CDS 50.0%
GTGGGAGAAGAATCAAAGGG+AGG - chr6.2:33235494-33235513 MS.gene09342:CDS 50.0%
TATGAGGGAGGCGATAAAGG+CGG - chr6.2:33234015-33234034 MS.gene09342:CDS 50.0%
TCCCACGTCTCTTTGGCTAT+CGG + chr6.2:33235174-33235193 None:intergenic 50.0%
TGGCTAGCATGCTCAGACAT+GGG + chr6.2:33235467-33235486 None:intergenic 50.0%
TGGCTAGCATGCTGAGACAT+GGG + chr6.2:33235365-33235384 None:intergenic 50.0%
TGGCTAGCATGCTGAGACAT+TGG + chr6.2:33235365-33235384 None:intergenic 50.0%
TTCTTAGCGAACCCAACACC+TGG + chr6.2:33233580-33233599 None:intergenic 50.0%
TTGGCTAGCATGCTCAGACA+TGG + chr6.2:33235468-33235487 None:intergenic 50.0%
TTGGCTAGCATGCTGAGACA+TGG + chr6.2:33235570-33235589 None:intergenic 50.0%
! AGGTGTTGCACTGAGTGTGA+AGG - chr6.2:33234546-33234565 MS.gene09342:intron 50.0%
! ATCCTCCTCCCACGTCTTTT+TGG + chr6.2:33235589-33235608 None:intergenic 50.0%
! GCTTGATAGCCAGAAAGACG+TGG - chr6.2:33235271-33235290 MS.gene09342:intron 50.0%
!! TGGCTAGCACTCTGAGACAT+AGG + chr6.2:33235650-33235669 None:intergenic 50.0%
!! TGGTGATGGTTCTATGAGGG+AGG - chr6.2:33234003-33234022 MS.gene09342:CDS 50.0%
!!! TGAAGAGTTTTGGGGGGACT+TGG - chr6.2:33234168-33234187 MS.gene09342:intron 50.0%
AGACGTGGGAGGAGGATCAA+AGG - chr6.2:33235388-33235407 MS.gene09342:CDS 55.0%
AGACGTGGGAGGAGGATCAA+CGG - chr6.2:33235388-33235407 MS.gene09342:CDS 55.0%
AGCCAAAAAGACGTGGGAGG+AGG - chr6.2:33235584-33235603 MS.gene09342:CDS 55.0%
AGCCAAAGAGACGTGGGAGA+AGG - chr6.2:33235176-33235195 MS.gene09342:intron 55.0%
AGCCAGAAAGACGTGGGAGA+AGG - chr6.2:33235278-33235297 MS.gene09342:CDS 55.0%
ATCCTCCTCCCACGTCTTTC+TGG + chr6.2:33235385-33235404 None:intergenic 55.0%
ATTCAAGCTGGGTCGGGAAG+CGG - chr6.2:33236231-33236250 MS.gene09342:CDS 55.0%
CCCACGTCTCTTTGGCTATC+GGG + chr6.2:33235173-33235192 None:intergenic 55.0%
CCCGATAGCCAAAGAGACGT+GGG - chr6.2:33235170-33235189 MS.gene09342:intron 55.0%
CGTGAAGGTGATGAAGGTGG+AGG - chr6.2:33232935-33232954 MS.gene09342:CDS 55.0%
GAAGGTGGAGGTGATGAAGG+TGG - chr6.2:33232947-33232966 MS.gene09342:CDS 55.0%
GACGTGGGAGGAGGATCAAA+GGG - chr6.2:33235389-33235408 MS.gene09342:CDS 55.0%
GCATGCTAGCCAGAAAGACG+TGG - chr6.2:33235373-33235392 MS.gene09342:CDS 55.0%
GCTAGCCAAAAAGACGTGGG+AGG - chr6.2:33235479-33235498 MS.gene09342:CDS 55.0%
GCTCAGAAGGGTGGATATCC+AGG - chr6.2:33233559-33233578 MS.gene09342:CDS 55.0%
GGGATACATGGTGGCTCAGA+AGG - chr6.2:33233546-33233565 MS.gene09342:CDS 55.0%
GTGGGAGAAGGATCAAAGGG+AGG - chr6.2:33235188-33235207 MS.gene09342:intron 55.0%
TACATGGTGGCTCAGAAGGG+TGG - chr6.2:33233550-33233569 MS.gene09342:CDS 55.0%
TCTGCGTTGTCTTGAACGCG+AGG - chr6.2:33234468-33234487 MS.gene09342:intron 55.0%
TGGCTATCGGGCTGAGACAT+GGG + chr6.2:33235161-33235180 None:intergenic 55.0%
TTGGCTATCGGGCTGAGACA+TGG + chr6.2:33235162-33235181 None:intergenic 55.0%
! AGGCACCTGTTAGGGCATCA+AGG - chr6.2:33235931-33235950 MS.gene09342:CDS 55.0%
! GGAGCACCTTTGCACTTCAC+TGG + chr6.2:33235032-33235051 None:intergenic 55.0%
!!! AGTTTTGGGGGGACTTGGTG+AGG - chr6.2:33234173-33234192 MS.gene09342:intron 55.0%
!!! GTTTTGGGGGGACTTGGTGA+GGG - chr6.2:33234174-33234193 MS.gene09342:intron 55.0%
AGAGGCCAAAGTCGCGGCAA+TGG - chr6.2:33236053-33236072 MS.gene09342:CDS 60.0%
AGCCAGAAAGACGTGGGAGG+AGG - chr6.2:33235380-33235399 MS.gene09342:CDS 60.0%
GACGTGGGAGGAGGATCAAC+GGG - chr6.2:33235593-33235612 MS.gene09342:CDS 60.0%
GCCCGATAGCCAAAGAGACG+TGG - chr6.2:33235169-33235188 MS.gene09342:intron 60.0%
GCTAGCCAGAAAGACGTGGG+AGG - chr6.2:33235377-33235396 MS.gene09342:CDS 60.0%
GGTGGAGGTGATGAAGGTGG+AGG - chr6.2:33232950-33232969 MS.gene09342:CDS 60.0%
GTGGGAGGAGGATCAAAGGG+AGG - chr6.2:33235392-33235411 MS.gene09342:CDS 60.0%
! GCGTGGTGAGGCACCTGTTA+GGG - chr6.2:33235923-33235942 MS.gene09342:CDS 60.0%
GTGGGAGGAGGATCAACGGG+AGG - chr6.2:33235596-33235615 MS.gene09342:CDS 65.0%
! CGCGTGGTGAGGCACCTGTT+AGG - chr6.2:33235922-33235941 MS.gene09342:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 33232545 33236332 33232545 ID=MS.gene09342
chr6.2 mRNA 33232545 33236332 33232545 ID=MS.gene09342.t1;Parent=MS.gene09342
chr6.2 exon 33235272 33236332 33235272 ID=MS.gene09342.t1.exon1;Parent=MS.gene09342.t1
chr6.2 CDS 33235272 33236332 33235272 ID=cds.MS.gene09342.t1;Parent=MS.gene09342.t1
chr6.2 exon 33234301 33234436 33234301 ID=MS.gene09342.t1.exon2;Parent=MS.gene09342.t1
chr6.2 CDS 33234301 33234436 33234301 ID=cds.MS.gene09342.t1;Parent=MS.gene09342.t1
chr6.2 exon 33233129 33234145 33233129 ID=MS.gene09342.t1.exon3;Parent=MS.gene09342.t1
chr6.2 CDS 33233129 33234145 33233129 ID=cds.MS.gene09342.t1;Parent=MS.gene09342.t1
chr6.2 exon 33232906 33233031 33232906 ID=MS.gene09342.t1.exon4;Parent=MS.gene09342.t1
chr6.2 CDS 33232906 33233031 33232906 ID=cds.MS.gene09342.t1;Parent=MS.gene09342.t1
chr6.2 exon 33232743 33232820 33232743 ID=MS.gene09342.t1.exon5;Parent=MS.gene09342.t1
chr6.2 CDS 33232743 33232820 33232743 ID=cds.MS.gene09342.t1;Parent=MS.gene09342.t1
chr6.2 exon 33232545 33232652 33232545 ID=MS.gene09342.t1.exon6;Parent=MS.gene09342.t1
chr6.2 CDS 33232545 33232652 33232545 ID=cds.MS.gene09342.t1;Parent=MS.gene09342.t1
Gene Sequence

>MS.gene09342

ATGGAAAACAACAACAATGACTTTACGGATTTTGGTACACCAGAACATGATTACGGTTCTACGGATGTGGATTTGAGTGATGAAACATATCCGATCATTGTTGGGAGTTGTGGTAAATCTTCTGAGAATGTCGAACAGAATGTAGATGATGATGATGATGATGATGATGCTGATGATGTGAGTTATGGTAATTTTACGAAGAATACTCAAGGGAATACAGGTGATGAGCAGTATGATGAAACTAGAGACAATGAAAGTGATGATGGTGGTTGTTCTGGTGATTATAGTGCTGGTGATAAAGGTGAAGATGATGGAAGTGAATGTGATGAAAGTCAAGGTGATGAAGGTGAACGTGATGAAGGTGAAAGTGATGAAAGTGAAGGTGATGAACGTGAAGGTGATGAAGGTGGAGGTGATGAAGGTGGAGGTGATGAAAGTGAAGGGGATGAAAGTGAAGGTCATGGTAGTAAAGTTGATGAAAGTGAAGGTGATGAAAGTGAAGGTGATAACAATTTAGCTGAAGATGATGACGTAGTTGTTGGTGAGGAAATGGTAAGGATAAATTCATTAACTGCTGAAGGAATAAGGAAAATGGAATTTGTGAGTGTCGATGAAGCTTACAATTTTTATTATAAGTACGGTAAGTGTAAAGGTTTTGTTGTTAGGAAGAGTGATATTAGGCGCAATGTTAACGGTGAGATTGTAATGAGGCAGTATGTATGCAACAAGCAGGGGATCAGAGAGAAGAAACATTTATCAAGATTAGATAGGCAAAGAGAGCACCGACGTCTCACTCGTACAAAGTGTCCAGTTAGGCTCCGTGTTCATAACAGACCCAAAAAGGGTAGATATGTTGTGTCTATTTTTGAAGAGGGTCACAACCATGAACCTACTCCAACCAATGTTGTGCATTTACACCCTGTTTATCGGAAAATATTCGAGGTAGATAAAGCACAGATTGATGGTCTTCAGTCACACGGAATAAGAACTTGTCATATAATGGGATACATGGTGGCTCAGAAGGGTGGATATCCAGGTGTTGGGTTCGCTAAGAAAGATCTGTACAATTACTTTGACAAAAAAAATGTGTGCTGTTATTAAGGATGGTGATGTTTTAGCTGCCCTAAACTATCTGAATGTTAAGTCCTCAACTGATCCACATTCCTTTTGTGAATATTCTGCCACTGATAACGGACGTTTGAAATGTCTATTTTGGGCAGATGGCAAAAGCAGATCAGATTATTTCTACTTTGGCGATGTGGTTGCATTTGACACAACGTACAACAAGAACAAATACCACTATCCGTTGGTGATTTTGTCTGGCTGCAACAACCACTCACAAACAGTTATATTTGGTGCTGCATTGGTGATGGATGAAACAATATAAACTTATATGTGGGTGTTGACCAGTTTTCTAGATTGTATGGGAAAAAAACTTCCAAAAGCAGTTGTAACAGATGGTGATGGTTCTATGAGGGAGGCGATAAAGGCGGTTTTACCAAGTACGCGTCATCGTCTATGTTCTTGGCATCTGAATAAGAATGCTATGGACAATGTCAAGAATTTAGCTTTTTTGGAAGGTTTTAAAAAAGCAATGTACTCTAATTTTACGGAGGATGAATTTGAAGAGTTTTGGGGGGACTTGGTGAGGGAAAATCGCCTTGAGAACAATCCATGGGTTACCAAAACATATGAGAACAAAGAATTGTGGGCAACTGCATACCTGCATGACGATTTCTTTGGTGGTATAAGAACTACGTCTCAATGTGAGTCTGTTAATAAAATCATAAAGAGTTATGTTAGGAAGAAAGGAAGCATCTTTGAATTTCTGCACAATTTTGAAGAGGCAATGAGAGGCTACAGAAATAACAAACTTGTAGCTGGTTTTAAATTCAGGTTTTCATCCCCTGTGCTAACAACTCATCTGCGTTGTCTTGAACGCGAGGCTGTTGAAATCTATACGGCAGAGATCTTTCAAGAAGTGAAAGAAGAGATTATGAAAGGTGTTGCACTGAGTGTGAAGGAAAAAGAAGTGAGTGGTGACTTAAGAAAAATGAAGTTGACAAAATATCTTGAGGAAGGTGTTTATGAAATTCTATACGATGAGTCGATCTCAGCAATTCAGTGTTCTTGCAGGAAATTTGAATCTCGAGGGGTTCCATGCTCCCATATTTTTTTGTGTTGAAGGAAGAACGTGCTGAACACATTCCAGAATGTTTGATTTTGTTGCGTTGGACGAAAAAGGCGAAGATTGGTTTCTTTAATGTGGACTATTGTGGGGAAGTAGATTCTAAGTTGATGGAGATTGCTCGATATGGTGCATTATGTAATGTGTTTACAAATTTTTGCAGGGAAGTGTCCAAAAAGGGTAGCTTGTATGCTGATGTGCTGGATGACATACAAAAGCTTCAGGAAAAGTACGTGAGCCCTGAAGTTCCAATTGTTACTGGAAACTCAACAATGGACCACGTACGTGATCCATTTCCAGTGAAGTGCAAAGGTGCTCCAAAGAAGAATAAAAAGGCACCAAAGTTTGTAAGAAAATGTTCAAACTGTGGCAGCAAGCAACATGATGCCAGAAAATGTTCCGCAGACACTGAACGTCTTTTTGTGCCCATGTCTCAGCCCGATAGCCAAAGAGACGTGGGAGAAGGATCAAAGGGAGGAAAATCAAAGAAGAAGACATGTTCCGCAAGAACTGAGCATCTTTCTGTGCCCATGTCTCAGCTTGATAGCCAGAAAGACGTGGGAGAAGGATCAAAGAGAGTGAAATCGAAGAAAAAGAATTGTTATGCAAGCAATCAACATCTTTCTATGCCAATGTCTCAGCATGCTAGCCAGAAAGACGTGGGAGGAGGATCAAAGGGAGGAAACCATAAGAAAAAGACATGTTCTGCAAGAAATCAACATATTTCTGCGCCCATGTCTGAGCATGCTAGCCAAAAAGACGTGGGAGAAGAATCAAAGGGAGGAAACCCAAAGAAAAAGACATGTGCTGCTAGCAATCAACATATTTCTGCTCCCATGTCTCAGCATGCTAGCCAAAAAGACGTGGGAGGAGGATCAACGGGAGGAAACCCAAAGAAAAAGACATGTTCTGCGCCTATGTCTCAGAGTGCTAGCCAAAAAGACGTGGCAGAAGGATTAAAGGGAGGTAGTCAAAGCGAGGTTGTCAAGGATTCACAAAGATCCGTGAATATGAACGTAAGTACCAACAATGTGTTTAAATATAGGAATGTAAATGACCTACTTACTGCACAAGTAATCTGCACCTTTTGACTAACTTCTCAATTTTTGGCAGAATAAGAACATTGACAGTGAGGATTGTGTGATGATTCCTGAACAAGCTAAAGTAGGAAAGAAAAGGAAAAGAAGAACGCGTGGTGAGGCACCTGTTAGGGCATCAAGGAGACTAATGGCACTGAATGTAAGTTCAATCAAATTAATCCCATATTCTTGACCTCATATATGTTGTTTTTTAAGGATAACATGGATAATTTTTGATTTAAGAGGCCAAAGTCGCGGCAATGGACAATGATGAAGAAGATGATACTGTGTCAGGAAATGATTCGTCTAACGAAGATGACAGAGTATAACTTCAATTTTGAATTGCCAATTTTGAGTCTAAACGTAATGTGTCCCAGTCCAATGAGAAATGCTTTTTACTTGTGTTTGTGTAGGAAGATATTCAAGCTGGGTCGGGAAGCGGACCTGAACCTACTGTGAATGTGATGGAAGTTGCTTCTTGTACGACGTTGATGCAACATATGATGTCCTTACGTCGTTGA
Protein sequence

>MS.gene09342.t1

MENNNNDFTDFGTPEHDYGSTDVDLSDETYPIIVGSCGKSSENVEQNVDDDDDDDDADDVSYGNFTKNTQGNTGDEQYDETRDNESDDGGCSGDYSAGDKGEDDGSECDESQGDEGERDEGESDESEGDEREGDEGGGDEGGGDESEGDESEGHGSKVDESEGDESEGDNNLAEDDDVVVGEEMVRINSLTAEGIRKMEFVSVDEAYNFYYKYGKCKGFVVRKSDIRRNVNGEIVMRQYVCNKQGIREKKHLSRLDRQREHRRLTRTKCPVRLRVHNRPKKGRYVVSIFEEGHNHEPTPTNVVHLHPVYRKIFEVDKAQIDGLQSHGIRTCHIMGYMVAQKGGYPGVGFAKKDLFSSPVLTTHLRCLEREAVEIYTAEIFQEVKEEIMKGVALSVKEKEEERAEHIPECLILLRWTKKAKIGFFNVDYCGEVDSKLMEIARYGALCNVFTNFCREVSKKGSLYADVLDDIQKLQEKYVSPEVPIVTGNSTMDHVRDPFPVKCKGAPKKNKKAPKFVRKCSNCGSKQHDARKCSADTERLFVPMSQPDSQRDVGEGSKGGKSKKKTCSARTEHLSVPMSQLDSQKDVGEGSKRVKSKKKNCYASNQHLSMPMSQHASQKDVGGGSKGGNHKKKTCSARNQHISAPMSEHASQKDVGEESKGGNPKKKTCAASNQHISAPMSQHASQKDVGGGSTGGNPKKKTCSAPMSQSASQKDVAEGLKGGSQSEVVKDSQRSVNMNNKNIDSEDCVMIPEQAKVGKKRKRRTRGEAPVRASRRLMALNAKVAAMDNDEEDDTVSGNDSSNEDDREDIQAGSGSGPEPTVNVMEVASCTTLMQHMMSLRR