Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09427.t1 | TKY57837.1 | 44.4 | 160 | 83 | 3 | 3 | 156 | 8 | 167 | 8.40E-29 | 137.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09427.t1 | Q9LVA1 | 32.2 | 152 | 87 | 6 | 5 | 145 | 8 | 154 | 5.2e-11 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09427.t1 | A0A445H3P5 | 43.1 | 160 | 85 | 3 | 5 | 158 | 10 | 169 | 3.0e-28 | 135.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09427.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09427.t1 | MTR_1g047060 | 53.125 | 96 | 36 | 2 | 111 | 206 | 3 | 89 | 7.25e-24 | 92.0 |
| MS.gene09427.t1 | MTR_4g094302 | 28.108 | 185 | 109 | 7 | 5 | 175 | 12 | 186 | 3.64e-15 | 72.0 |
| MS.gene09427.t1 | MTR_5g021710 | 31.818 | 154 | 85 | 6 | 5 | 145 | 9 | 155 | 4.51e-15 | 73.9 |
| MS.gene09427.t1 | MTR_4g101680 | 32.903 | 155 | 82 | 6 | 5 | 145 | 8 | 154 | 1.01e-14 | 73.2 |
| MS.gene09427.t1 | MTR_7g105170 | 28.161 | 174 | 101 | 7 | 1 | 152 | 1 | 172 | 1.74e-14 | 71.2 |
| MS.gene09427.t1 | MTR_8g059170 | 35.766 | 137 | 70 | 7 | 5 | 133 | 15 | 141 | 1.89e-14 | 72.0 |
| MS.gene09427.t1 | MTR_4g094302 | 30.709 | 127 | 80 | 4 | 5 | 131 | 12 | 130 | 2.00e-14 | 69.3 |
| MS.gene09427.t1 | MTR_2g080010 | 31.618 | 136 | 81 | 4 | 5 | 134 | 16 | 145 | 4.17e-14 | 71.2 |
| MS.gene09427.t1 | MTR_8g094580 | 34.074 | 135 | 74 | 7 | 5 | 133 | 8 | 133 | 6.58e-14 | 70.1 |
| MS.gene09427.t1 | MTR_1g008740 | 32.468 | 154 | 85 | 7 | 5 | 145 | 28 | 175 | 2.56e-13 | 68.9 |
| MS.gene09427.t1 | MTR_2g079990 | 34.058 | 138 | 73 | 7 | 5 | 134 | 17 | 144 | 2.64e-13 | 68.9 |
| MS.gene09427.t1 | MTR_1g008740 | 32.468 | 154 | 85 | 7 | 5 | 145 | 14 | 161 | 3.03e-13 | 68.6 |
| MS.gene09427.t1 | MTR_4g035590 | 30.460 | 174 | 100 | 8 | 5 | 165 | 9 | 174 | 3.55e-13 | 68.6 |
| MS.gene09427.t1 | MTR_2g079990 | 34.058 | 138 | 73 | 7 | 5 | 134 | 17 | 144 | 4.21e-13 | 68.6 |
| MS.gene09427.t1 | MTR_2g086880 | 29.530 | 149 | 80 | 7 | 6 | 142 | 20 | 155 | 4.61e-13 | 68.6 |
| MS.gene09427.t1 | MTR_2g086880 | 29.530 | 149 | 80 | 7 | 6 | 142 | 20 | 155 | 5.17e-13 | 68.6 |
| MS.gene09427.t1 | MTR_3g109340 | 31.169 | 154 | 86 | 7 | 5 | 145 | 23 | 169 | 8.27e-13 | 67.4 |
| MS.gene09427.t1 | MTR_3g096920 | 33.577 | 137 | 72 | 8 | 5 | 133 | 8 | 133 | 1.17e-12 | 66.6 |
| MS.gene09427.t1 | MTR_3g064580 | 30.000 | 160 | 82 | 8 | 5 | 145 | 7 | 155 | 1.32e-12 | 67.4 |
| MS.gene09427.t1 | MTR_3g096920 | 33.577 | 137 | 72 | 8 | 5 | 133 | 8 | 133 | 1.51e-12 | 66.6 |
| MS.gene09427.t1 | MTR_2g064090 | 30.657 | 137 | 81 | 6 | 5 | 134 | 7 | 136 | 8.86e-12 | 64.3 |
| MS.gene09427.t1 | MTR_1g069805 | 32.026 | 153 | 83 | 9 | 5 | 145 | 11 | 154 | 1.06e-11 | 63.5 |
| MS.gene09427.t1 | MTR_4g134460 | 35.075 | 134 | 70 | 7 | 6 | 131 | 56 | 180 | 1.14e-11 | 64.3 |
| MS.gene09427.t1 | MTR_6g011860 | 30.827 | 133 | 77 | 6 | 6 | 131 | 17 | 141 | 1.41e-11 | 63.9 |
| MS.gene09427.t1 | MTR_3g088110 | 32.353 | 136 | 75 | 6 | 5 | 133 | 8 | 133 | 1.90e-11 | 63.2 |
| MS.gene09427.t1 | MTR_8g023860 | 28.846 | 156 | 87 | 7 | 1 | 142 | 9 | 154 | 2.75e-11 | 63.2 |
| MS.gene09427.t1 | MTR_5g040420 | 30.075 | 133 | 79 | 4 | 6 | 131 | 16 | 141 | 2.90e-11 | 63.2 |
| MS.gene09427.t1 | MTR_7g097090 | 32.680 | 153 | 82 | 9 | 5 | 145 | 11 | 154 | 2.98e-11 | 62.4 |
| MS.gene09427.t1 | MTR_1g097300 | 32.593 | 135 | 73 | 6 | 6 | 131 | 21 | 146 | 3.18e-11 | 63.2 |
| MS.gene09427.t1 | MTR_8g023930 | 29.801 | 151 | 90 | 6 | 2 | 142 | 22 | 166 | 3.87e-11 | 62.8 |
| MS.gene09427.t1 | MTR_3g109340 | 29.412 | 153 | 89 | 7 | 5 | 145 | 23 | 168 | 4.16e-11 | 62.4 |
| MS.gene09427.t1 | MTR_8g093790 | 29.310 | 174 | 97 | 9 | 5 | 174 | 11 | 162 | 5.90e-11 | 60.1 |
| MS.gene09427.t1 | MTR_4g075980 | 29.530 | 149 | 90 | 6 | 6 | 145 | 17 | 159 | 6.11e-11 | 61.6 |
| MS.gene09427.t1 | MTR_4g108760 | 29.375 | 160 | 89 | 8 | 1 | 145 | 15 | 165 | 7.08e-11 | 61.6 |
| MS.gene09427.t1 | MTR_5g014300 | 26.452 | 155 | 95 | 6 | 5 | 144 | 7 | 157 | 7.39e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09427.t1 | AT4G36160 | 32.468 | 154 | 84 | 6 | 5 | 145 | 11 | 157 | 2.19e-16 | 77.8 |
| MS.gene09427.t1 | AT4G36160 | 32.468 | 154 | 84 | 6 | 5 | 145 | 11 | 157 | 2.19e-16 | 77.8 |
| MS.gene09427.t1 | AT4G36160 | 32.468 | 154 | 84 | 6 | 5 | 145 | 15 | 161 | 2.19e-16 | 78.2 |
| MS.gene09427.t1 | AT1G71930 | 29.677 | 155 | 93 | 5 | 5 | 148 | 10 | 159 | 1.02e-15 | 75.5 |
| MS.gene09427.t1 | AT1G71930 | 29.677 | 155 | 93 | 5 | 5 | 148 | 10 | 159 | 1.02e-15 | 75.5 |
| MS.gene09427.t1 | AT2G18060 | 31.818 | 154 | 85 | 6 | 5 | 145 | 10 | 156 | 1.23e-15 | 75.9 |
| MS.gene09427.t1 | AT2G18060 | 31.818 | 154 | 85 | 6 | 5 | 145 | 10 | 156 | 1.23e-15 | 75.9 |
| MS.gene09427.t1 | AT4G27410 | 31.677 | 161 | 85 | 8 | 5 | 150 | 15 | 165 | 2.01e-15 | 74.3 |
| MS.gene09427.t1 | AT4G27410 | 29.379 | 177 | 85 | 9 | 5 | 150 | 15 | 182 | 3.76e-14 | 71.2 |
| MS.gene09427.t1 | AT4G17980 | 30.435 | 138 | 80 | 4 | 5 | 133 | 7 | 137 | 1.20e-13 | 68.9 |
| MS.gene09427.t1 | AT4G17980 | 30.435 | 138 | 80 | 4 | 5 | 133 | 7 | 137 | 1.41e-13 | 69.3 |
| MS.gene09427.t1 | AT5G08790 | 28.972 | 214 | 117 | 11 | 5 | 196 | 8 | 208 | 1.42e-13 | 68.9 |
| MS.gene09427.t1 | AT3G15500 | 32.593 | 135 | 75 | 6 | 5 | 132 | 15 | 140 | 4.49e-13 | 68.2 |
| MS.gene09427.t1 | AT5G63790 | 36.765 | 136 | 69 | 8 | 5 | 133 | 51 | 176 | 4.79e-13 | 67.8 |
| MS.gene09427.t1 | AT3G44290 | 25.874 | 143 | 93 | 5 | 6 | 142 | 16 | 151 | 5.39e-13 | 66.6 |
| MS.gene09427.t1 | AT3G44290 | 25.874 | 143 | 93 | 5 | 6 | 142 | 16 | 151 | 5.54e-13 | 67.8 |
| MS.gene09427.t1 | AT1G77450 | 36.496 | 137 | 68 | 7 | 5 | 133 | 11 | 136 | 5.56e-13 | 67.0 |
| MS.gene09427.t1 | AT5G63790 | 36.765 | 136 | 69 | 8 | 5 | 133 | 61 | 186 | 5.61e-13 | 67.8 |
| MS.gene09427.t1 | AT1G52890 | 33.094 | 139 | 69 | 7 | 5 | 132 | 15 | 140 | 1.14e-12 | 67.0 |
| MS.gene09427.t1 | AT5G64530 | 33.077 | 130 | 69 | 5 | 5 | 131 | 4 | 118 | 1.29e-12 | 64.3 |
| MS.gene09427.t1 | AT1G01720 | 33.577 | 137 | 72 | 6 | 5 | 133 | 8 | 133 | 1.88e-12 | 65.9 |
| MS.gene09427.t1 | AT5G64530 | 27.604 | 192 | 106 | 5 | 5 | 175 | 4 | 183 | 3.06e-12 | 63.9 |
| MS.gene09427.t1 | AT5G17260 | 28.025 | 157 | 89 | 7 | 5 | 145 | 7 | 155 | 3.88e-12 | 65.9 |
| MS.gene09427.t1 | AT3G29035 | 32.090 | 134 | 75 | 6 | 5 | 131 | 25 | 149 | 5.27e-12 | 65.1 |
| MS.gene09427.t1 | AT3G03200 | 28.662 | 157 | 88 | 7 | 5 | 145 | 7 | 155 | 5.98e-12 | 65.5 |
| MS.gene09427.t1 | AT5G64060 | 27.803 | 223 | 123 | 10 | 6 | 211 | 8 | 209 | 6.47e-12 | 65.1 |
| MS.gene09427.t1 | AT4G28530 | 29.651 | 172 | 94 | 6 | 5 | 153 | 11 | 178 | 7.15e-12 | 64.7 |
| MS.gene09427.t1 | AT5G39610 | 30.573 | 157 | 84 | 8 | 5 | 145 | 21 | 168 | 8.25e-12 | 63.9 |
| MS.gene09427.t1 | AT4G10350 | 31.210 | 157 | 84 | 8 | 5 | 145 | 10 | 158 | 8.28e-12 | 64.7 |
| MS.gene09427.t1 | AT5G04395 | 31.293 | 147 | 81 | 6 | 5 | 134 | 29 | 172 | 8.43e-12 | 62.8 |
| MS.gene09427.t1 | AT5G50820 | 34.074 | 135 | 73 | 7 | 5 | 134 | 18 | 141 | 9.19e-12 | 62.8 |
| MS.gene09427.t1 | AT1G26870 | 29.231 | 130 | 80 | 4 | 6 | 129 | 18 | 141 | 1.57e-11 | 63.9 |
| MS.gene09427.t1 | AT5G61430 | 29.697 | 165 | 92 | 8 | 1 | 150 | 14 | 169 | 2.23e-11 | 63.2 |
| MS.gene09427.t1 | AT5G07680 | 30.000 | 160 | 88 | 8 | 1 | 145 | 15 | 165 | 5.91e-11 | 62.0 |
| MS.gene09427.t1 | AT1G33280 | 29.870 | 154 | 87 | 7 | 5 | 145 | 9 | 154 | 6.08e-11 | 61.6 |
| MS.gene09427.t1 | AT5G07680 | 30.000 | 160 | 88 | 8 | 1 | 145 | 1 | 151 | 8.19e-11 | 61.6 |
Find 57 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACTTATGCTTGCAATTA+TGG | 0.161929 | 6.4:+22772104 | MS.gene09427:CDS |
| ATGGATCTAGACTCTGAATT+TGG | 0.204240 | 6.4:+22770953 | MS.gene09427:CDS |
| GGCATTGTAAGACTGGATTT+TGG | 0.240614 | 6.4:+22770623 | MS.gene09427:CDS |
| CCATGGTTCTGACCGGATTA+AGG | 0.270785 | 6.4:+22770489 | MS.gene09427:CDS |
| CCTCCTCGGCTCCTCAGTTT+TGG | 0.293397 | 6.4:-22770602 | None:intergenic |
| TGGATCTAGACTCTGAATTT+GGG | 0.333596 | 6.4:+22770954 | MS.gene09427:CDS |
| CCTTGTGTGAGGGAAGAAAA+AGG | 0.356880 | 6.4:-22770560 | None:intergenic |
| TGTTGGAGCTGATGACGTTT+TGG | 0.393392 | 6.4:+22770675 | MS.gene09427:CDS |
| AAAACACAACAAACAACAAA+AGG | 0.431197 | 6.4:-22770914 | None:intergenic |
| TGAAGGAACTCAGCAACTTA+AGG | 0.444240 | 6.4:+22771036 | MS.gene09427:CDS |
| ACAGTCTCAGCTCCTTAATC+CGG | 0.483053 | 6.4:-22770501 | None:intergenic |
| TCTAGTGCTGGTGTTGGTGT+TGG | 0.484669 | 6.4:+22771073 | MS.gene09427:CDS |
| CCGAGGAGGCATTGTAAGAC+TGG | 0.484776 | 6.4:+22770616 | MS.gene09427:CDS |
| TGAGCAAGATGTAATTCAAA+AGG | 0.487325 | 6.4:-22770535 | None:intergenic |
| ACTCAGCAACTTAAGGAGGC+TGG | 0.487489 | 6.4:+22771043 | MS.gene09427:CDS |
| GTTGGTGTTGGTGTTGAGCA+AGG | 0.488176 | 6.4:+22771085 | MS.gene09427:CDS |
| TTGTTCATCGGAAGGGAAGA+AGG | 0.494722 | 6.4:-22770419 | None:intergenic |
| CTCAGCAACTTAAGGAGGCT+GGG | 0.496847 | 6.4:+22771044 | MS.gene09427:CDS |
| GAGTCTAGATCCATCCCTCT+AGG | 0.505901 | 6.4:-22770944 | None:intergenic |
| GGCTACTCAAGCCACTCCTC+AGG | 0.507680 | 6.4:+22771126 | MS.gene09427:CDS |
| GCTGGGACTAGTTCTAGTGC+TGG | 0.526562 | 6.4:+22771061 | MS.gene09427:CDS |
| GAAGAGGTTCAGAATTTCCA+TGG | 0.526667 | 6.4:+22770472 | MS.gene09427:CDS |
| AGAACGCGATCAAAACTAGT+TGG | 0.526855 | 6.4:+22770743 | MS.gene09427:CDS |
| GCTGTTAGAGACATTACTGT+TGG | 0.528259 | 6.4:+22770658 | MS.gene09427:CDS |
| CACTCTTGTTAACAATCCTC+AGG | 0.528444 | 6.4:+22770780 | MS.gene09427:CDS |
| TCTGATGACAAGGCGAATGA+AGG | 0.528665 | 6.4:+22771019 | MS.gene09427:CDS |
| AGAATTTCCATGGTTCTGAC+CGG | 0.533129 | 6.4:+22770482 | MS.gene09427:CDS |
| ACCTTCATCGACATCAGATA+AGG | 0.533255 | 6.4:-22770978 | None:intergenic |
| GCAATGGATTTGCCTCCACC+TGG | 0.541606 | 6.4:+22770391 | None:intergenic |
| CCAGTCTTACAATGCCTCCT+CGG | 0.543084 | 6.4:-22770616 | None:intergenic |
| CCACATGGAAGCTATGACGC+CGG | 0.546830 | 6.4:+22772080 | MS.gene09427:CDS |
| ATTGCAAGCATAAGTTGCTC+CGG | 0.553025 | 6.4:-22772099 | None:intergenic |
| ACTAGTTCTAGTGCTGGTGT+TGG | 0.556272 | 6.4:+22771067 | MS.gene09427:CDS |
| AGGAGTGGCTTGAGTAGCCA+TGG | 0.558328 | 6.4:-22771122 | None:intergenic |
| AAGAAGGCAACACCAGGTGG+AGG | 0.559720 | 6.4:-22770403 | None:intergenic |
| AGTCTAGATCCATCCCTCTA+GGG | 0.570873 | 6.4:-22770943 | None:intergenic |
| AGGTGATGCATCGCATTCCA+TGG | 0.574376 | 6.4:+22771105 | MS.gene09427:CDS |
| CAGTAAAACTCCCTTGTGTG+AGG | 0.577220 | 6.4:-22770571 | None:intergenic |
| CCTTAATCCGGTCAGAACCA+TGG | 0.580530 | 6.4:-22770489 | None:intergenic |
| GAAGGGAAGAAGGCAACACC+AGG | 0.588550 | 6.4:-22770409 | None:intergenic |
| GCCTTATCTGATGTCGATGA+AGG | 0.589295 | 6.4:+22770977 | MS.gene09427:CDS |
| GGGAAGAAGGCAACACCAGG+TGG | 0.590123 | 6.4:-22770406 | None:intergenic |
| GTAGCTAACAAGTTGTTCAT+CGG | 0.592426 | 6.4:-22770431 | None:intergenic |
| TAACAAGTTGTTCATCGGAA+GGG | 0.594831 | 6.4:-22770426 | None:intergenic |
| CTAACAAGTTGTTCATCGGA+AGG | 0.597677 | 6.4:-22770427 | None:intergenic |
| AGTAAAACTCCCTTGTGTGA+GGG | 0.603789 | 6.4:-22770570 | None:intergenic |
| GTAATTCAAAAGGATCATAC+CGG | 0.608058 | 6.4:-22770525 | None:intergenic |
| TTAAGGAGCTGAGACTGTAC+CGG | 0.611881 | 6.4:+22770506 | MS.gene09427:CDS |
| CTGCCAAAACTGAGGAGCCG+AGG | 0.619650 | 6.4:+22770599 | MS.gene09427:CDS |
| CCGGCGTCATAGCTTCCATG+TGG | 0.629672 | 6.4:-22772080 | None:intergenic |
| TGACTATGTTGTGTCCCACA+TGG | 0.631632 | 6.4:+22772065 | MS.gene09427:CDS |
| GGATCTAGACTCTGAATTTG+GGG | 0.633562 | 6.4:+22770955 | MS.gene09427:CDS |
| CCAAAACTGAGGAGCCGAGG+AGG | 0.634705 | 6.4:+22770602 | MS.gene09427:CDS |
| CGGCGTCATAGCTTCCATGT+GGG | 0.637767 | 6.4:-22772079 | None:intergenic |
| CTGCTTCACTGCCAAAACTG+AGG | 0.647730 | 6.4:+22770591 | MS.gene09427:CDS |
| AGGAACTCAGCAACTTAAGG+AGG | 0.651240 | 6.4:+22771039 | MS.gene09427:CDS |
| TGATGACGACTCTGATGACA+AGG | 0.678157 | 6.4:+22771009 | MS.gene09427:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATATAAATAATT+GGG | + | chr6.4:22770885-22770904 | MS.gene09427:intron | 0.0% |
| !!! | TTTTTTTTAATATAAATAAT+TGG | + | chr6.4:22770884-22770903 | MS.gene09427:intron | 0.0% |
| !! | AAACTTAAAGAAAAATAAAA+AGG | - | chr6.4:22771848-22771867 | None:intergenic | 10.0% |
| !! | TACATATAATAAACAAAAAC+AGG | - | chr6.4:22771254-22771273 | None:intergenic | 15.0% |
| !!! | ATTTTTCTTTAAGTTTTTTG+TGG | + | chr6.4:22771852-22771871 | MS.gene09427:intron | 15.0% |
| !! | AAAAAACTACCAATACATAA+AGG | - | chr6.4:22771470-22771489 | None:intergenic | 20.0% |
| !! | TATTCAAAACCTTTATGTAT+TGG | + | chr6.4:22771458-22771477 | MS.gene09427:intron | 20.0% |
| !! | TCGATGATTAATTTATGTAT+TGG | + | chr6.4:22770847-22770866 | MS.gene09427:intron | 20.0% |
| !! | TTTAATATAAATAATTGGGC+AGG | + | chr6.4:22770889-22770908 | MS.gene09427:intron | 20.0% |
| !!! | ATTGAAATATATTTTACCTG+AGG | - | chr6.4:22771145-22771164 | None:intergenic | 20.0% |
| !!! | CATAATTTTTGATACAATTG+TGG | - | chr6.4:22771573-22771592 | None:intergenic | 20.0% |
| !!! | CATCTTTTCATGTAATTTTA+TGG | + | chr6.4:22771962-22771981 | MS.gene09427:intron | 20.0% |
| !!! | CATGTTTTTTTTTTCCTTTT+TGG | + | chr6.4:22771736-22771755 | MS.gene09427:intron | 20.0% |
| !!! | GATTAATTTATGTATTGGTA+AGG | + | chr6.4:22770852-22770871 | MS.gene09427:intron | 20.0% |
| !!! | GTTTTGAATAACAACAAATA+TGG | - | chr6.4:22771448-22771467 | None:intergenic | 20.0% |
| !!! | TTAATTTGTTACATGTTTTG+AGG | - | chr6.4:22771784-22771803 | None:intergenic | 20.0% |
| !!! | TTATGTATTGGTAGTTTTTT+TGG | + | chr6.4:22771470-22771489 | MS.gene09427:intron | 20.0% |
| ! | AAAACACAACAAACAACAAA+AGG | - | chr6.4:22770917-22770936 | None:intergenic | 25.0% |
| ! | ATATGTATTTCACTTTCTGT+TGG | + | chr6.4:22771267-22771286 | MS.gene09427:intron | 25.0% |
| ! | CATAAATAATCCAAACACAA+TGG | - | chr6.4:22771519-22771538 | None:intergenic | 25.0% |
| ! | CATGAAAATCATTGATATTG+TGG | - | chr6.4:22771330-22771349 | None:intergenic | 25.0% |
| ! | GTTTGATATTGATGTTTATC+AGG | + | chr6.4:22772023-22772042 | MS.gene09427:intron | 25.0% |
| ! | TTAATTTCTACACACCAAAA+AGG | - | chr6.4:22771753-22771772 | None:intergenic | 25.0% |
| !! | AATAAAAAGGACATGTTTTG+AGG | - | chr6.4:22771835-22771854 | None:intergenic | 25.0% |
| !! | CTTTTCATGTAATTTTATGG+TGG | + | chr6.4:22771965-22771984 | MS.gene09427:intron | 25.0% |
| !! | TCTCTCTTCATTTTCTATAT+AGG | + | chr6.4:22770709-22770728 | MS.gene09427:CDS | 25.0% |
| AACTCAATTCATTCATGTGA+TGG | + | chr6.4:22771664-22771683 | MS.gene09427:intron | 30.0% | |
| ACAATTGTGGATGTAGAATT+CGG | - | chr6.4:22771560-22771579 | None:intergenic | 30.0% | |
| GTAATTCAAAAGGATCATAC+CGG | - | chr6.4:22770528-22770547 | None:intergenic | 30.0% | |
| TCGATGAAATAACGAACATA+CGG | - | chr6.4:22770831-22770850 | None:intergenic | 30.0% | |
| TGAGCAAGATGTAATTCAAA+AGG | - | chr6.4:22770538-22770557 | None:intergenic | 30.0% | |
| TGTAAAATTCAGTTGCAAAG+AGG | - | chr6.4:22771645-22771664 | None:intergenic | 30.0% | |
| TGTGACCATGATTTAAAAGT+TGG | - | chr6.4:22771362-22771381 | None:intergenic | 30.0% | |
| ! | AAGCATTGTAAAATTGTTGC+CGG | - | chr6.4:22771194-22771213 | None:intergenic | 30.0% |
| ! | AATATATTTTACCTGAGGAG+TGG | - | chr6.4:22771140-22771159 | None:intergenic | 30.0% |
| ! | CATGACCAACTTTTAAATCA+TGG | + | chr6.4:22771354-22771373 | MS.gene09427:intron | 30.0% |
| !!! | AACCTCTTCATTGTTTTTGT+TGG | - | chr6.4:22770461-22770480 | None:intergenic | 30.0% |
| !!! | CTCGATATTTATTTTGTCAC+CGG | + | chr6.4:22771172-22771191 | MS.gene09427:intron | 30.0% |
| AATCATGGTCACACTAATTG+TGG | + | chr6.4:22771369-22771388 | MS.gene09427:intron | 35.0% | |
| AGAGGATCAACAACATTAAC+AGG | - | chr6.4:22771627-22771646 | None:intergenic | 35.0% | |
| ATATTGTGGCTGACATATGA+TGG | - | chr6.4:22771316-22771335 | None:intergenic | 35.0% | |
| ATGGATCTAGACTCTGAATT+TGG | + | chr6.4:22770953-22770972 | MS.gene09427:CDS | 35.0% | |
| GCAACTTATGCTTGCAATTA+TGG | + | chr6.4:22772104-22772123 | MS.gene09427:CDS | 35.0% | |
| GTAGCTAACAAGTTGTTCAT+CGG | - | chr6.4:22770434-22770453 | None:intergenic | 35.0% | |
| TAACAAGTTGTTCATCGGAA+GGG | - | chr6.4:22770429-22770448 | None:intergenic | 35.0% | |
| TGCCAACAAAAACAATGAAG+AGG | + | chr6.4:22770456-22770475 | MS.gene09427:CDS | 35.0% | |
| TGGATCTAGACTCTGAATTT+GGG | + | chr6.4:22770954-22770973 | MS.gene09427:CDS | 35.0% | |
| TGGATGTAGAATTCGGTAAT+TGG | - | chr6.4:22771553-22771572 | None:intergenic | 35.0% | |
| ! | AATCCTCAGGTATGTCATTT+GGG | + | chr6.4:22770793-22770812 | MS.gene09427:intron | 35.0% |
| !!! | CTTCATTGTTTTTGTTGGCA+AGG | - | chr6.4:22770456-22770475 | None:intergenic | 35.0% |
| ACCTTCATCGACATCAGATA+AGG | - | chr6.4:22770981-22771000 | None:intergenic | 40.0% | |
| AGAACGCGATCAAAACTAGT+TGG | + | chr6.4:22770743-22770762 | MS.gene09427:CDS | 40.0% | |
| AGTAAAACTCCCTTGTGTGA+GGG | - | chr6.4:22770573-22770592 | None:intergenic | 40.0% | |
| ATTGCAAGCATAAGTTGCTC+CGG | - | chr6.4:22772102-22772121 | None:intergenic | 40.0% | |
| CAATCCTCAGGTATGTCATT+TGG | + | chr6.4:22770792-22770811 | MS.gene09427:intron | 40.0% | |
| CACTCTTGTTAACAATCCTC+AGG | + | chr6.4:22770780-22770799 | MS.gene09427:CDS | 40.0% | |
| CCAAACACAATGGAGCTATT+TGG | - | chr6.4:22771509-22771528 | None:intergenic | 40.0% | |
| CCAAATAGCTCCATTGTGTT+TGG | + | chr6.4:22771506-22771525 | MS.gene09427:intron | 40.0% | |
| CTAACAAGTTGTTCATCGGA+AGG | - | chr6.4:22770430-22770449 | None:intergenic | 40.0% | |
| GAAGAGGTTCAGAATTTCCA+TGG | + | chr6.4:22770472-22770491 | MS.gene09427:CDS | 40.0% | |
| GCTGTTAGAGACATTACTGT+TGG | + | chr6.4:22770658-22770677 | MS.gene09427:CDS | 40.0% | |
| GGATCTAGACTCTGAATTTG+GGG | + | chr6.4:22770955-22770974 | MS.gene09427:CDS | 40.0% | |
| TGAAGGAACTCAGCAACTTA+AGG | + | chr6.4:22771036-22771055 | MS.gene09427:CDS | 40.0% | |
| TTTCCCAAATGACATACCTG+AGG | - | chr6.4:22770799-22770818 | None:intergenic | 40.0% | |
| ! | ACTGGATTTTGGATGCAGAA+GGG | + | chr6.4:22770634-22770653 | MS.gene09427:CDS | 40.0% |
| ! | CTTTTTCTTCCCTCACACAA+GGG | + | chr6.4:22770561-22770580 | MS.gene09427:CDS | 40.0% |
| ! | GGCATTGTAAGACTGGATTT+TGG | + | chr6.4:22770623-22770642 | MS.gene09427:CDS | 40.0% |
| !! | AGAATTTCCATGGTTCTGAC+CGG | + | chr6.4:22770482-22770501 | MS.gene09427:CDS | 40.0% |
| !!! | AGGACATGTTTTGAGGAATC+TGG | - | chr6.4:22771828-22771847 | None:intergenic | 40.0% |
| !!! | TAGTTTTGATCGCGTTCTGA+GGG | - | chr6.4:22770741-22770760 | None:intergenic | 40.0% |
| ACAGTCTCAGCTCCTTAATC+CGG | - | chr6.4:22770504-22770523 | None:intergenic | 45.0% | |
| AGGAACTCAGCAACTTAAGG+AGG | + | chr6.4:22771039-22771058 | MS.gene09427:CDS | 45.0% | |
| AGTCTAGATCCATCCCTCTA+GGG | - | chr6.4:22770946-22770965 | None:intergenic | 45.0% | |
| CAGTAAAACTCCCTTGTGTG+AGG | - | chr6.4:22770574-22770593 | None:intergenic | 45.0% | |
| CCTTGTGTGAGGGAAGAAAA+AGG | - | chr6.4:22770563-22770582 | None:intergenic | 45.0% | |
| GCCTTATCTGATGTCGATGA+AGG | + | chr6.4:22770977-22770996 | MS.gene09427:CDS | 45.0% | |
| TCTGATGACAAGGCGAATGA+AGG | + | chr6.4:22771019-22771038 | MS.gene09427:CDS | 45.0% | |
| TGACTATGTTGTGTCCCACA+TGG | + | chr6.4:22772065-22772084 | MS.gene09427:CDS | 45.0% | |
| TTAAGGAGCTGAGACTGTAC+CGG | + | chr6.4:22770506-22770525 | MS.gene09427:CDS | 45.0% | |
| TTGTGGCTGACATATGATGG+AGG | - | chr6.4:22771313-22771332 | None:intergenic | 45.0% | |
| TTGTTCATCGGAAGGGAAGA+AGG | - | chr6.4:22770422-22770441 | None:intergenic | 45.0% | |
| ! | CCTTTTTCTTCCCTCACACA+AGG | + | chr6.4:22770560-22770579 | MS.gene09427:CDS | 45.0% |
| ! | GACTGGATTTTGGATGCAGA+AGG | + | chr6.4:22770633-22770652 | MS.gene09427:CDS | 45.0% |
| ! | TGATGACGACTCTGATGACA+AGG | + | chr6.4:22771009-22771028 | MS.gene09427:CDS | 45.0% |
| !! | ACTAGTTCTAGTGCTGGTGT+TGG | + | chr6.4:22771067-22771086 | MS.gene09427:CDS | 45.0% |
| !! | AGTTTTGATCGCGTTCTGAG+GGG | - | chr6.4:22770740-22770759 | None:intergenic | 45.0% |
| !! | GTGTTTTTGACTGCCCTAGA+GGG | + | chr6.4:22770930-22770949 | MS.gene09427:CDS | 45.0% |
| !! | TGTGTTTTTGACTGCCCTAG+AGG | + | chr6.4:22770929-22770948 | MS.gene09427:CDS | 45.0% |
| !! | TGTTGGAGCTGATGACGTTT+TGG | + | chr6.4:22770675-22770694 | MS.gene09427:CDS | 45.0% |
| !!! | CTAGTTTTGATCGCGTTCTG+AGG | - | chr6.4:22770742-22770761 | None:intergenic | 45.0% |
| ACTCAGCAACTTAAGGAGGC+TGG | + | chr6.4:22771043-22771062 | MS.gene09427:CDS | 50.0% | |
| AGGTGATGCATCGCATTCCA+TGG | + | chr6.4:22771105-22771124 | MS.gene09427:CDS | 50.0% | |
| CCAGTCTTACAATGCCTCCT+CGG | - | chr6.4:22770619-22770638 | None:intergenic | 50.0% | |
| CCTTAATCCGGTCAGAACCA+TGG | - | chr6.4:22770492-22770511 | None:intergenic | 50.0% | |
| CTCAGCAACTTAAGGAGGCT+GGG | + | chr6.4:22771044-22771063 | MS.gene09427:CDS | 50.0% | |
| CTGCTTCACTGCCAAAACTG+AGG | + | chr6.4:22770591-22770610 | MS.gene09427:CDS | 50.0% | |
| GAGTCTAGATCCATCCCTCT+AGG | - | chr6.4:22770947-22770966 | None:intergenic | 50.0% | |
| !! | CCATGGTTCTGACCGGATTA+AGG | + | chr6.4:22770489-22770508 | MS.gene09427:CDS | 50.0% |
| !! | GGAGCTGATGACGTTTTGGT+GGG | + | chr6.4:22770679-22770698 | MS.gene09427:CDS | 50.0% |
| !! | GTTGGTGTTGGTGTTGAGCA+AGG | + | chr6.4:22771085-22771104 | MS.gene09427:CDS | 50.0% |
| !! | TCTAGTGCTGGTGTTGGTGT+TGG | + | chr6.4:22771073-22771092 | MS.gene09427:CDS | 50.0% |
| !! | TGGAGCTGATGACGTTTTGG+TGG | + | chr6.4:22770678-22770697 | MS.gene09427:CDS | 50.0% |
| !! | TTTTGACTGCCCTAGAGGGA+TGG | + | chr6.4:22770934-22770953 | MS.gene09427:CDS | 50.0% |
| AAGAAGGCAACACCAGGTGG+AGG | - | chr6.4:22770406-22770425 | None:intergenic | 55.0% | |
| AGGAGTGGCTTGAGTAGCCA+TGG | - | chr6.4:22771125-22771144 | None:intergenic | 55.0% | |
| CCACATGGAAGCTATGACGC+CGG | + | chr6.4:22772080-22772099 | MS.gene09427:CDS | 55.0% | |
| CGGCGTCATAGCTTCCATGT+GGG | - | chr6.4:22772082-22772101 | None:intergenic | 55.0% | |
| GAAGGGAAGAAGGCAACACC+AGG | - | chr6.4:22770412-22770431 | None:intergenic | 55.0% | |
| !! | CCGAGGAGGCATTGTAAGAC+TGG | + | chr6.4:22770616-22770635 | MS.gene09427:CDS | 55.0% |
| !! | GCTGGGACTAGTTCTAGTGC+TGG | + | chr6.4:22771061-22771080 | MS.gene09427:CDS | 55.0% |
| CCAAAACTGAGGAGCCGAGG+AGG | + | chr6.4:22770602-22770621 | MS.gene09427:CDS | 60.0% | |
| CCGGCGTCATAGCTTCCATG+TGG | - | chr6.4:22772083-22772102 | None:intergenic | 60.0% | |
| CTGCCAAAACTGAGGAGCCG+AGG | + | chr6.4:22770599-22770618 | MS.gene09427:CDS | 60.0% | |
| GGCTACTCAAGCCACTCCTC+AGG | + | chr6.4:22771126-22771145 | MS.gene09427:CDS | 60.0% | |
| GGGAAGAAGGCAACACCAGG+TGG | - | chr6.4:22770409-22770428 | None:intergenic | 60.0% | |
| ! | CCTCCTCGGCTCCTCAGTTT+TGG | - | chr6.4:22770605-22770624 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 22770394 | 22772146 | 22770394 | ID=MS.gene09427 |
| chr6.4 | mRNA | 22770394 | 22772146 | 22770394 | ID=MS.gene09427.t1;Parent=MS.gene09427 |
| chr6.4 | exon | 22770394 | 22770801 | 22770394 | ID=MS.gene09427.t1.exon1;Parent=MS.gene09427.t1 |
| chr6.4 | CDS | 22770394 | 22770801 | 22770394 | ID=cds.MS.gene09427.t1;Parent=MS.gene09427.t1 |
| chr6.4 | exon | 22770911 | 22771147 | 22770911 | ID=MS.gene09427.t1.exon2;Parent=MS.gene09427.t1 |
| chr6.4 | CDS | 22770911 | 22771147 | 22770911 | ID=cds.MS.gene09427.t1;Parent=MS.gene09427.t1 |
| chr6.4 | exon | 22772045 | 22772146 | 22772045 | ID=MS.gene09427.t1.exon3;Parent=MS.gene09427.t1 |
| chr6.4 | CDS | 22772045 | 22772146 | 22772045 | ID=cds.MS.gene09427.t1;Parent=MS.gene09427.t1 |
| Gene Sequence |
| Protein sequence |
