AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09576

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09576.t1 MTR_5g015950 94.196 448 26 0 1 448 1 448 0.0 860
MS.gene09576.t1 MTR_3g053270 94.196 448 26 0 1 448 1 448 0.0 860
MS.gene09576.t1 MTR_4g095500 67.100 462 122 9 1 448 25 470 0.0 590
MS.gene09576.t1 MTR_2g089100 44.573 433 196 9 28 448 45 445 3.21e-122 363
MS.gene09576.t1 MTR_4g097080 26.573 429 264 7 24 447 122 504 1.07e-47 171
MS.gene09576.t1 MTR_5g015490 27.098 417 259 9 36 447 115 491 7.64e-43 157
MS.gene09576.t1 MTR_1g029420 26.265 415 258 6 33 445 223 591 1.94e-39 150
MS.gene09576.t1 MTR_3g089055 27.014 422 246 8 33 445 201 569 1.96e-39 149
MS.gene09576.t1 MTR_3g089055 27.014 422 246 8 33 445 196 564 2.26e-39 149
MS.gene09576.t1 MTR_2g099110 26.728 434 244 13 34 447 73 452 5.63e-36 138
MS.gene09576.t1 MTR_5g094450 24.773 440 261 11 21 445 147 531 1.21e-35 138
MS.gene09576.t1 MTR_2g082090 26.241 423 250 10 32 445 209 578 1.11e-34 136
MS.gene09576.t1 MTR_3g056110 25.000 424 254 11 32 445 172 541 1.49e-34 135
MS.gene09576.t1 MTR_5g097480 25.754 431 242 12 32 445 174 543 5.32e-34 134
MS.gene09576.t1 MTR_4g133660 25.349 430 248 11 32 446 172 543 2.29e-32 129
MS.gene09576.t1 MTR_8g442410 25.837 418 253 12 36 445 156 524 3.43e-32 129
MS.gene09576.t1 MTR_8g020840 25.935 428 253 12 33 445 169 547 1.96e-30 124
MS.gene09576.t1 MTR_4g064150 23.697 422 273 10 32 448 358 735 8.18e-30 123
MS.gene09576.t1 MTR_2g026250 25.476 420 258 11 32 445 225 595 2.99e-29 120
MS.gene09576.t1 MTR_3g065980 25.935 428 238 10 36 445 173 539 4.62e-29 120
MS.gene09576.t1 MTR_7g027190 24.821 419 261 10 35 445 300 672 3.39e-28 118
MS.gene09576.t1 MTR_4g104020 27.123 424 245 15 34 445 148 519 1.35e-27 115
MS.gene09576.t1 MTR_4g064180 24.582 419 268 15 32 446 251 625 3.95e-27 114
MS.gene09576.t1 MTR_2g097410 22.381 420 279 9 32 448 368 743 2.38e-26 112
MS.gene09576.t1 MTR_4g064120 24.105 419 270 14 32 446 251 625 6.69e-26 111
MS.gene09576.t1 MTR_4g064160 24.645 422 265 12 32 448 313 686 1.50e-24 107
MS.gene09576.t1 MTR_3g022830 24.312 436 278 11 36 445 26 435 1.27e-23 103
MS.gene09576.t1 MTR_4g102790 22.619 420 270 12 35 447 292 663 1.66e-23 103
MS.gene09576.t1 MTR_4g064200 22.912 419 268 12 35 448 284 652 9.14e-23 101
MS.gene09576.t1 MTR_4g077760 26.366 421 251 13 30 445 188 554 9.75e-22 98.2
MS.gene09576.t1 MTR_7g062120 21.667 420 280 9 32 448 369 742 2.66e-21 97.4
MS.gene09576.t1 MTR_7g057230 25.000 444 256 12 9 445 283 656 2.92e-21 97.1
MS.gene09576.t1 MTR_7g074650 22.330 412 259 12 38 447 441 793 4.62e-21 96.7
MS.gene09576.t1 MTR_2g097310 22.038 422 274 11 32 448 269 640 1.00e-20 95.5
MS.gene09576.t1 MTR_2g097473 21.968 437 267 12 27 448 279 656 1.40e-20 95.1
MS.gene09576.t1 MTR_4g076140 23.251 486 288 16 9 445 19 468 2.23e-20 93.6
MS.gene09576.t1 MTR_2g097463 23.185 427 274 12 27 448 280 657 2.73e-20 94.0
MS.gene09576.t1 MTR_5g009080 23.160 462 264 13 35 445 56 477 3.62e-20 93.2
MS.gene09576.t1 MTR_2g097467 23.242 327 216 9 124 448 363 656 5.07e-20 93.2
MS.gene09576.t1 MTR_1g069725 21.928 415 259 12 35 445 109 462 2.71e-18 87.4
MS.gene09576.t1 MTR_8g093070 23.419 427 245 14 36 448 140 498 8.61e-16 79.7
MS.gene09576.t1 MTR_2g097380 21.308 413 239 13 42 448 231 563 9.72e-16 79.7
MS.gene09576.t1 MTR_1g096030 23.009 452 251 15 22 445 76 458 9.51e-15 76.6
MS.gene09576.t1 MTR_7g109580 23.220 323 199 9 129 445 274 553 4.95e-14 74.7
MS.gene09576.t1 MTR_3g072710 21.646 328 207 7 126 445 214 499 3.55e-13 71.6
MS.gene09576.t1 MTR_5g058860 22.931 423 269 15 35 445 119 496 1.30e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09576.t1 AT3G49950 56.293 437 151 9 14 447 10 409 1.34e-166 475
MS.gene09576.t1 AT5G67411 55.066 227 75 4 163 387 1 202 5.55e-75 233
MS.gene09576.t1 AT4G37650 27.716 451 268 12 14 448 123 531 6.19e-43 159
MS.gene09576.t1 AT1G21450 26.241 423 249 9 33 445 223 592 4.37e-34 135
MS.gene09576.t1 AT5G48150 26.988 415 250 7 36 445 123 489 4.45e-34 133
MS.gene09576.t1 AT5G48150 26.988 415 250 7 36 445 123 489 4.45e-34 133
MS.gene09576.t1 AT5G48150 26.988 415 250 7 36 445 123 489 4.45e-34 133
MS.gene09576.t1 AT5G48150 26.988 415 250 7 36 445 123 489 4.45e-34 133
MS.gene09576.t1 AT2G04890 25.243 412 253 7 36 445 54 412 8.89e-34 131
MS.gene09576.t1 AT5G17490 26.087 414 247 6 34 445 159 515 5.35e-33 131
MS.gene09576.t1 AT1G50600 24.645 422 258 9 32 445 156 525 2.12e-32 129
MS.gene09576.t1 AT1G50600 25.118 422 256 10 32 445 231 600 4.21e-32 129
MS.gene09576.t1 AT1G50600 25.118 422 256 10 32 445 227 596 4.48e-32 129
MS.gene09576.t1 AT3G03450 26.214 412 251 8 36 445 184 544 6.58e-32 128
MS.gene09576.t1 AT4G17230 24.009 429 256 9 32 447 155 526 1.48e-29 121
MS.gene09576.t1 AT4G17230 24.009 429 256 9 32 447 155 526 1.48e-29 121
MS.gene09576.t1 AT2G29065 25.837 418 267 11 35 448 252 630 1.69e-28 119
MS.gene09576.t1 AT2G01570 24.939 413 250 13 36 445 225 580 4.48e-27 114
MS.gene09576.t1 AT1G14920 24.578 415 249 12 36 445 173 528 1.12e-26 112
MS.gene09576.t1 AT3G13840 25.943 424 243 13 33 445 146 509 2.45e-26 111
MS.gene09576.t1 AT5G52510 22.811 434 258 11 31 445 264 639 2.84e-25 109
MS.gene09576.t1 AT1G50420 23.904 456 268 14 35 445 57 478 4.49e-24 104
MS.gene09576.t1 AT1G66350 24.455 413 246 10 36 445 156 505 5.61e-24 104
MS.gene09576.t1 AT2G37650 22.931 423 267 14 32 447 332 702 2.68e-21 97.4
MS.gene09576.t1 AT2G37650 22.931 423 267 14 32 447 344 714 3.37e-21 97.1
MS.gene09576.t1 AT3G46600 23.333 420 272 11 32 448 1 373 4.61e-21 94.7
MS.gene09576.t1 AT3G46600 23.239 426 265 11 32 448 209 581 1.73e-20 94.7
MS.gene09576.t1 AT1G55580 23.462 439 276 13 32 445 41 444 2.21e-20 93.6
MS.gene09576.t1 AT3G46600 23.404 423 268 11 32 448 177 549 2.83e-20 94.0
MS.gene09576.t1 AT1G07520 23.611 432 256 14 36 448 155 531 4.32e-20 93.2
MS.gene09576.t1 AT1G07520 23.611 432 256 14 36 448 155 531 4.32e-20 93.2
MS.gene09576.t1 AT5G59450 22.936 436 282 10 20 448 212 600 4.39e-20 93.6
MS.gene09576.t1 AT1G07520 23.611 432 256 14 36 448 320 696 7.39e-20 92.8
MS.gene09576.t1 AT1G07520 23.611 432 256 14 36 448 319 695 7.72e-20 92.8
MS.gene09576.t1 AT1G07530 20.903 421 283 11 32 448 393 767 1.43e-18 89.0
MS.gene09576.t1 AT1G63100 23.653 334 199 9 127 445 336 628 2.35e-18 88.2
MS.gene09576.t1 AT1G63100 23.653 334 199 9 127 445 361 653 2.78e-18 88.2
MS.gene09576.t1 AT2G29060 21.934 424 275 10 32 447 318 693 4.72e-18 87.4
MS.gene09576.t1 AT2G29060 21.934 424 275 10 32 447 281 656 4.85e-18 87.4
MS.gene09576.t1 AT5G66770 26.370 292 176 8 126 414 294 549 3.50e-17 84.3
MS.gene09576.t1 AT5G41920 22.542 417 257 14 35 445 43 399 7.39e-16 79.7
MS.gene09576.t1 AT3G50650 24.706 340 190 9 126 445 248 541 1.09e-12 70.5

Find 74 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTTCTTACGACGAATT+AGG 0.219981 5.2:+7646470 MS.gene09576:CDS
CGACGAATTAGGTTCAAAAT+TGG 0.230348 5.2:+7646481 MS.gene09576:CDS
AATCCGCGTTTAATTATCTT+TGG 0.234805 5.2:+7646849 MS.gene09576:CDS
GCGGTTTGTGTAACTGCTTC+TGG 0.248870 5.2:-7646131 None:intergenic
GCAGCTGTTAGCTTGATTAA+AGG 0.266223 5.2:-7646392 None:intergenic
TTTCAGTGAGGATTCGGTTT+TGG 0.295734 5.2:+7647057 MS.gene09576:CDS
AGATCAAGCATTGGTGGAAT+TGG 0.305832 5.2:-7646452 None:intergenic
TAAAACAAGAAACGTGATTA+TGG 0.317994 5.2:+7646514 MS.gene09576:CDS
AAGTGTAGTAGAGGGTTATT+AGG 0.328746 5.2:-7645909 None:intergenic
GCATTGGTGGAATTGGAATA+TGG 0.329573 5.2:-7646445 None:intergenic
ATGAGCTTCTTGTGCTTACT+TGG 0.341746 5.2:+7647134 MS.gene09576:CDS
AATGTAAATAGAGTTTCTTC+AGG 0.361286 5.2:-7646671 None:intergenic
AGATTTAACATCAAGTAGTT+TGG 0.367518 5.2:+7646814 MS.gene09576:CDS
CACTAGCACAACAAATCCTT+TGG 0.378101 5.2:+7646000 MS.gene09576:CDS
GCTTCCTGCTAGGCGTTGAT+TGG 0.395425 5.2:-7646057 None:intergenic
TTAACACCTTGGCATCGTTT+CGG 0.442385 5.2:+7646233 MS.gene09576:CDS
TCCACCAAGACGACTATTGT+TGG 0.444785 5.2:-7646782 None:intergenic
TCTCATTCGTTGCTCCCACT+TGG 0.447629 5.2:-7647011 None:intergenic
ATGATAGTTATAACTATTTG+CGG 0.450034 5.2:-7646150 None:intergenic
GAGGAACTGCTCCATGCAAT+TGG 0.452861 5.2:-7645940 None:intergenic
AGTTTGTTTCAGTGAGGATT+CGG 0.453807 5.2:+7647051 MS.gene09576:CDS
GAACAAGGACTAATAACTAC+AGG 0.460908 5.2:-7645873 None:intergenic
TAATAAATCTCATGAAGCAT+TGG 0.465324 5.2:+7646616 MS.gene09576:CDS
CTGAGAGTGTTGTGTTGTTA+AGG 0.465694 5.2:-7646025 None:intergenic
ATGTTATCTTTGCTTCTGCT+TGG 0.471769 5.2:+7647167 MS.gene09576:CDS
TAGTAGAGGGTTATTAGGTG+TGG 0.478477 5.2:-7645904 None:intergenic
GGTATGAAGCTGAAATTTGT+TGG 0.481427 5.2:+7646927 MS.gene09576:CDS
GCAATTCTAGAAGCTACTAA+AGG 0.483791 5.2:+7646275 MS.gene09576:CDS
ATTGTTACTTTCAATTGCAC+TGG 0.486642 5.2:-7645973 None:intergenic
GTCTCCAATCAACGCCTAGC+AGG 0.489729 5.2:+7646053 MS.gene09576:CDS
AGAAAACTCGTGTGTTTGTA+TGG 0.500579 5.2:-7646183 None:intergenic
CTTCTTGTGCTTACTTGGAA+AGG 0.503343 5.2:+7647139 MS.gene09576:CDS
TGATGAACATGCAGCTGGAT+GGG 0.514109 5.2:+7647096 MS.gene09576:CDS
TTCTGGAATATTGCACCTAC+AGG 0.516060 5.2:-7646114 None:intergenic
GAGAATGTGATAGCATATGA+AGG 0.519545 5.2:+7646956 MS.gene09576:CDS
AGATCCAACAATAGTCGTCT+TGG 0.519549 5.2:+7646778 MS.gene09576:CDS
TCCAACAATAGTCGTCTTGG+TGG 0.526010 5.2:+7646781 MS.gene09576:CDS
AATGTGTCCACCGTGTCAAA+CGG 0.536257 5.2:-7646875 None:intergenic
ACTAGCACAACAAATCCTTT+GGG 0.538819 5.2:+7646001 MS.gene09576:CDS
CTTCAACAACGCCAATTGCA+TGG 0.549170 5.2:+7645929 MS.gene09576:CDS
AGTAGAGGGTTATTAGGTGT+GGG 0.549560 5.2:-7645903 None:intergenic
TTGCACTGGCACAGTGAATG+AGG 0.552241 5.2:-7645959 None:intergenic
ATGCTTGATGAACATGCAGC+TGG 0.552523 5.2:+7647091 MS.gene09576:CDS
CGTTGTTGAAGTGTAGTAGA+GGG 0.553431 5.2:-7645917 None:intergenic
GTGGGAGCAACGAATGAGAA+AGG 0.554477 5.2:+7647015 MS.gene09576:CDS
GATGAACATGCAGCTGGATG+GGG 0.559473 5.2:+7647097 MS.gene09576:CDS
TGAAGCTGAAATTTGTTGGA+AGG 0.560306 5.2:+7646931 MS.gene09576:CDS
TAAGAAAGATCAAGCATTGG+TGG 0.560629 5.2:-7646458 None:intergenic
GTTTCTTCAACTTATTCAGA+CGG 0.564374 5.2:+7646548 MS.gene09576:CDS
CTCGAATGAAGCTTCCTGCT+AGG 0.577569 5.2:-7646067 None:intergenic
TTGATGAACATGCAGCTGGA+TGG 0.579446 5.2:+7647095 MS.gene09576:CDS
TTGTGTTGTTAAGGACCCAA+AGG 0.585571 5.2:-7646016 None:intergenic
GCAATGGCGTCGATTAGTGT+AGG 0.586251 5.2:-7646350 None:intergenic
TGCCTTTGTTTACTCCCTCG+TGG 0.588128 5.2:-7646902 None:intergenic
GCGTTGTTGAAGTGTAGTAG+AGG 0.604252 5.2:-7645918 None:intergenic
GCTGTTAGCTTGATTAAAGG+AGG 0.610301 5.2:-7646389 None:intergenic
AACCTCATGATGATTTGCAA+TGG 0.610435 5.2:-7646366 None:intergenic
CAGCTGCAGTTAATAACTGT+AGG 0.611302 5.2:+7646408 MS.gene09576:CDS
AATGTTGCACTTGCACTCGT+AGG 0.611711 5.2:-7646592 None:intergenic
CGCCATTGCAAATCATCATG+AGG 0.616800 5.2:+7646364 MS.gene09576:CDS
TTGGATACCGTTTGACACGG+TGG 0.625357 5.2:+7646868 MS.gene09576:CDS
TCTTTGGATACCGTTTGACA+CGG 0.625561 5.2:+7646865 MS.gene09576:CDS
AGAATGTGATAGCATATGAA+GGG 0.625664 5.2:+7646957 MS.gene09576:CDS
GAGGGAGTAAACAAAGGCAG+TGG 0.640189 5.2:+7646906 MS.gene09576:CDS
TCAAGGAGTTTGTTTCAGTG+AGG 0.641089 5.2:+7647045 MS.gene09576:CDS
GGTGTGGGAAATTCTGAACA+AGG 0.649547 5.2:-7645888 None:intergenic
TCGTAAGAAAGATCAAGCAT+TGG 0.656089 5.2:-7646461 None:intergenic
GAGTCGAGTCTAAAACCAAG+TGG 0.658958 5.2:+7646996 MS.gene09576:CDS
AACAAGGACTAATAACTACA+GGG 0.659957 5.2:-7645872 None:intergenic
AGTCGAGTCTAAAACCAAGT+GGG 0.662079 5.2:+7646997 MS.gene09576:CDS
TACCACGAGGGAGTAAACAA+AGG 0.668759 5.2:+7646900 MS.gene09576:CDS
GTGTAACCGAAACGATGCCA+AGG 0.704462 5.2:-7646239 None:intergenic
CGCGTGCAAGAAGATCCTGT+AGG 0.763698 5.2:+7646099 MS.gene09576:CDS
TATCCAAAGATAATTAAACG+CGG 0.789557 5.2:-7646852 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATAGTTATAACTATTTG+CGG - chr5.2:7646153-7646172 None:intergenic 20.0%
!!! ATTTTATTGATTTAACACCT+TGG + chr5.2:7646222-7646241 MS.gene09576:CDS 20.0%
! AATGTAAATAGAGTTTCTTC+AGG - chr5.2:7646674-7646693 None:intergenic 25.0%
! AGATTTAACATCAAGTAGTT+TGG + chr5.2:7646814-7646833 MS.gene09576:CDS 25.0%
! TAAAACAAGAAACGTGATTA+TGG + chr5.2:7646514-7646533 MS.gene09576:CDS 25.0%
! TAATAAATCTCATGAAGCAT+TGG + chr5.2:7646616-7646635 MS.gene09576:CDS 25.0%
! TATCCAAAGATAATTAAACG+CGG - chr5.2:7646855-7646874 None:intergenic 25.0%
AACAAGGACTAATAACTACA+GGG - chr5.2:7645875-7645894 None:intergenic 30.0%
AATCCGCGTTTAATTATCTT+TGG + chr5.2:7646849-7646868 MS.gene09576:CDS 30.0%
AGAATGTGATAGCATATGAA+GGG + chr5.2:7646957-7646976 MS.gene09576:CDS 30.0%
GTTTCTTCAACTTATTCAGA+CGG + chr5.2:7646548-7646567 MS.gene09576:CDS 30.0%
!! ATTGTTACTTTCAATTGCAC+TGG - chr5.2:7645976-7645995 None:intergenic 30.0%
AAGTGTAGTAGAGGGTTATT+AGG - chr5.2:7645912-7645931 None:intergenic 35.0%
ACTAGCACAACAAATCCTTT+GGG + chr5.2:7646001-7646020 MS.gene09576:CDS 35.0%
AGAAAACTCGTGTGTTTGTA+TGG - chr5.2:7646186-7646205 None:intergenic 35.0%
ATGTTATCTTTGCTTCTGCT+TGG + chr5.2:7647167-7647186 MS.gene09576:CDS 35.0%
CGACGAATTAGGTTCAAAAT+TGG + chr5.2:7646481-7646500 MS.gene09576:CDS 35.0%
GAACAAGGACTAATAACTAC+AGG - chr5.2:7645876-7645895 None:intergenic 35.0%
GAGAATGTGATAGCATATGA+AGG + chr5.2:7646956-7646975 MS.gene09576:CDS 35.0%
GATCTTTCTTACGACGAATT+AGG + chr5.2:7646470-7646489 MS.gene09576:CDS 35.0%
GGTATGAAGCTGAAATTTGT+TGG + chr5.2:7646927-7646946 MS.gene09576:CDS 35.0%
TCGTAAGAAAGATCAAGCAT+TGG - chr5.2:7646464-7646483 None:intergenic 35.0%
! AACCTCATGATGATTTGCAA+TGG - chr5.2:7646369-7646388 None:intergenic 35.0%
! AGTTTGTTTCAGTGAGGATT+CGG + chr5.2:7647051-7647070 MS.gene09576:CDS 35.0%
! GCAATTCTAGAAGCTACTAA+AGG + chr5.2:7646275-7646294 MS.gene09576:CDS 35.0%
!! CGAAGTTTTTAGAAGCTGTA+CGG + chr5.2:7646750-7646769 MS.gene09576:CDS 35.0%
!! TAAGAAAGATCAAGCATTGG+TGG - chr5.2:7646461-7646480 None:intergenic 35.0%
!! TGAAGCTGAAATTTGTTGGA+AGG + chr5.2:7646931-7646950 MS.gene09576:CDS 35.0%
AGATCCAACAATAGTCGTCT+TGG + chr5.2:7646778-7646797 MS.gene09576:CDS 40.0%
AGTAGAGGGTTATTAGGTGT+GGG - chr5.2:7645906-7645925 None:intergenic 40.0%
ATGAGCTTCTTGTGCTTACT+TGG + chr5.2:7647134-7647153 MS.gene09576:CDS 40.0%
CACTAGCACAACAAATCCTT+TGG + chr5.2:7646000-7646019 MS.gene09576:CDS 40.0%
CAGCTGCAGTTAATAACTGT+AGG + chr5.2:7646408-7646427 MS.gene09576:CDS 40.0%
CGTTGTTGAAGTGTAGTAGA+GGG - chr5.2:7645920-7645939 None:intergenic 40.0%
CTTCTTGTGCTTACTTGGAA+AGG + chr5.2:7647139-7647158 MS.gene09576:CDS 40.0%
TAGTAGAGGGTTATTAGGTG+TGG - chr5.2:7645907-7645926 None:intergenic 40.0%
TCTTTGGATACCGTTTGACA+CGG + chr5.2:7646865-7646884 MS.gene09576:CDS 40.0%
TTAACACCTTGGCATCGTTT+CGG + chr5.2:7646233-7646252 MS.gene09576:CDS 40.0%
! AGTCGAGTCTAAAACCAAGT+GGG + chr5.2:7646997-7647016 MS.gene09576:CDS 40.0%
! GCAGCTGTTAGCTTGATTAA+AGG - chr5.2:7646395-7646414 None:intergenic 40.0%
! GCATTGGTGGAATTGGAATA+TGG - chr5.2:7646448-7646467 None:intergenic 40.0%
! GCTGTTAGCTTGATTAAAGG+AGG - chr5.2:7646392-7646411 None:intergenic 40.0%
! TCAAGGAGTTTGTTTCAGTG+AGG + chr5.2:7647045-7647064 MS.gene09576:CDS 40.0%
! TGGACACATTTTTACCACGA+GGG + chr5.2:7646888-7646907 MS.gene09576:CDS 40.0%
! TTGTGTTGTTAAGGACCCAA+AGG - chr5.2:7646019-7646038 None:intergenic 40.0%
!! AGATCAAGCATTGGTGGAAT+TGG - chr5.2:7646455-7646474 None:intergenic 40.0%
!! ATGAGAAAGGCACGTTTTCA+AGG + chr5.2:7647028-7647047 MS.gene09576:CDS 40.0%
!! CTGAGAGTGTTGTGTTGTTA+AGG - chr5.2:7646028-7646047 None:intergenic 40.0%
!! TTCTGGAATATTGCACCTAC+AGG - chr5.2:7646117-7646136 None:intergenic 40.0%
!! TTTCAGTGAGGATTCGGTTT+TGG + chr5.2:7647057-7647076 MS.gene09576:CDS 40.0%
!!! GATTCGGTTTTGGAGGTTAA+GGG + chr5.2:7647067-7647086 MS.gene09576:CDS 40.0%
AATGTGTCCACCGTGTCAAA+CGG - chr5.2:7646878-7646897 None:intergenic 45.0%
AATGTTGCACTTGCACTCGT+AGG - chr5.2:7646595-7646614 None:intergenic 45.0%
ATGCTTGATGAACATGCAGC+TGG + chr5.2:7647091-7647110 MS.gene09576:CDS 45.0%
CGCCATTGCAAATCATCATG+AGG + chr5.2:7646364-7646383 MS.gene09576:CDS 45.0%
CTTCAACAACGCCAATTGCA+TGG + chr5.2:7645929-7645948 MS.gene09576:CDS 45.0%
GCGTTGTTGAAGTGTAGTAG+AGG - chr5.2:7645921-7645940 None:intergenic 45.0%
GGTGTGGGAAATTCTGAACA+AGG - chr5.2:7645891-7645910 None:intergenic 45.0%
TACCACGAGGGAGTAAACAA+AGG + chr5.2:7646900-7646919 MS.gene09576:CDS 45.0%
TCCAACAATAGTCGTCTTGG+TGG + chr5.2:7646781-7646800 MS.gene09576:CDS 45.0%
TCCACCAAGACGACTATTGT+TGG - chr5.2:7646785-7646804 None:intergenic 45.0%
TGATGAACATGCAGCTGGAT+GGG + chr5.2:7647096-7647115 MS.gene09576:CDS 45.0%
TTGATGAACATGCAGCTGGA+TGG + chr5.2:7647095-7647114 MS.gene09576:CDS 45.0%
! GAGTCGAGTCTAAAACCAAG+TGG + chr5.2:7646996-7647015 MS.gene09576:CDS 45.0%
! GTGGACACATTTTTACCACG+AGG + chr5.2:7646887-7646906 MS.gene09576:CDS 45.0%
!!! GGATTCGGTTTTGGAGGTTA+AGG + chr5.2:7647066-7647085 MS.gene09576:CDS 45.0%
CTCGAATGAAGCTTCCTGCT+AGG - chr5.2:7646070-7646089 None:intergenic 50.0%
GAGGAACTGCTCCATGCAAT+TGG - chr5.2:7645943-7645962 None:intergenic 50.0%
GAGGGAGTAAACAAAGGCAG+TGG + chr5.2:7646906-7646925 MS.gene09576:CDS 50.0%
GATGAACATGCAGCTGGATG+GGG + chr5.2:7647097-7647116 MS.gene09576:CDS 50.0%
GCGGTTTGTGTAACTGCTTC+TGG - chr5.2:7646134-7646153 None:intergenic 50.0%
GTGGGAGCAACGAATGAGAA+AGG + chr5.2:7647015-7647034 MS.gene09576:CDS 50.0%
GTGTAACCGAAACGATGCCA+AGG - chr5.2:7646242-7646261 None:intergenic 50.0%
TCTCATTCGTTGCTCCCACT+TGG - chr5.2:7647014-7647033 None:intergenic 50.0%
TTGGATACCGTTTGACACGG+TGG + chr5.2:7646868-7646887 MS.gene09576:CDS 50.0%
! TGCCTTTGTTTACTCCCTCG+TGG - chr5.2:7646905-7646924 None:intergenic 50.0%
! TTGCACTGGCACAGTGAATG+AGG - chr5.2:7645962-7645981 None:intergenic 50.0%
!! CAGTGAGGATTCGGTTTTGG+AGG + chr5.2:7647060-7647079 MS.gene09576:CDS 50.0%
!! GCAATGGCGTCGATTAGTGT+AGG - chr5.2:7646353-7646372 None:intergenic 50.0%
CGCGTGCAAGAAGATCCTGT+AGG + chr5.2:7646099-7646118 MS.gene09576:CDS 55.0%
GTCTCCAATCAACGCCTAGC+AGG + chr5.2:7646053-7646072 MS.gene09576:CDS 55.0%
!! GCTTCCTGCTAGGCGTTGAT+TGG - chr5.2:7646060-7646079 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 7645855 7647201 7645855 ID=MS.gene09576
chr5.2 mRNA 7645855 7647201 7645855 ID=MS.gene09576.t1;Parent=MS.gene09576
chr5.2 exon 7645855 7647201 7645855 ID=MS.gene09576.t1.exon1;Parent=MS.gene09576.t1
chr5.2 CDS 7645855 7647201 7645855 ID=cds.MS.gene09576.t1;Parent=MS.gene09576.t1
Gene Sequence

>MS.gene09576

ATGAACAAAAATCAAATCCCTGTAGTTATTAGTCCTTGTTCAGAATTTCCCACACCTAATAACCCTCTACTACACTTCAACAACGCCAATTGCATGGAGCAGTTCCTCATTCACTGTGCCAGTGCAATTGAAAGTAACAATGCAACACTAGCACAACAAATCCTTTGGGTCCTTAACAACACAACACTCTCAGACGACGTCTCCAATCAACGCCTAGCAGGAAGCTTCATTCGAGCTCTTACAACGCGTGCAAGAAGATCCTGTAGGTGCAATATTCCAGAAGCAGTTACACAAACCGCAAATAGTTATAACTATCATCACAATCTCGCCATACAAACACACGAGTTTTCTGTCATTGAGTTAGCAAATTTTATTGATTTAACACCTTGGCATCGTTTCGGTTACACAGCAGCTAATTCTGCAATTCTAGAAGCTACTAAAGGATTTTCAGTTATTCACATTGTTGATTTGAGTTTAACACACTGCATGCAGATTCCTACACTAATCGACGCCATTGCAAATCATCATGAGGTTCCTCCTTTAATCAAGCTAACAGCTGCAGTTAATAACTGTAGGAATAAGAATATTAACCATATTCCAATTCCACCAATGCTTGATCTTTCTTACGACGAATTAGGTTCAAAATTGGTTAATTTTGCTAAAACAAGAAACGTGATTATGGAATTCAAAGCTGTTTCTTCAACTTATTCAGACGGATTTGCTTCGTTGATTGAACACCTACGAGTGCAAGTGCAACATTTTAATAAATCTCATGAAGCATTGGTTATAAACTGTCACATGATGCTTCATTATATTCCTGAAGAAACTCTATTTACATTTAAAGATACAAATTCAAATTCAAATTTGAATTTAAACTTTTGTTCATCGCTGCGCTCGAAGTTTTTAGAAGCTGTACGGAGTTTAGATCCAACAATAGTCGTCTTGGTGGATGAAGATGCAGATTTAACATCAAGTAGTTTGGTTAGTAGACTAAAATCCGCGTTTAATTATCTTTGGATACCGTTTGACACGGTGGACACATTTTTACCACGAGGGAGTAAACAAAGGCAGTGGTATGAAGCTGAAATTTGTTGGAAGGTTGAGAATGTGATAGCATATGAAGGGATTCAGAGAGTTGAGAGAGTCGAGTCTAAAACCAAGTGGGAGCAACGAATGAGAAAGGCACGTTTTCAAGGAGTTTGTTTCAGTGAGGATTCGGTTTTGGAGGTTAAGGGTATGCTTGATGAACATGCAGCTGGATGGGGATTGAAGAAAGAAGATGAGCTTCTTGTGCTTACTTGGAAAGGACATAATGTTATCTTTGCTTCTGCTTGGTTACCTTCTTGA
Protein sequence

>MS.gene09576.t1

MNKNQIPVVISPCSEFPTPNNPLLHFNNANCMEQFLIHCASAIESNNATLAQQILWVLNNTTLSDDVSNQRLAGSFIRALTTRARRSCRCNIPEAVTQTANSYNYHHNLAIQTHEFSVIELANFIDLTPWHRFGYTAANSAILEATKGFSVIHIVDLSLTHCMQIPTLIDAIANHHEVPPLIKLTAAVNNCRNKNINHIPIPPMLDLSYDELGSKLVNFAKTRNVIMEFKAVSSTYSDGFASLIEHLRVQVQHFNKSHEALVINCHMMLHYIPEETLFTFKDTNSNSNLNLNFCSSLRSKFLEAVRSLDPTIVVLVDEDADLTSSSLVSRLKSAFNYLWIPFDTVDTFLPRGSKQRQWYEAEICWKVENVIAYEGIQRVERVESKTKWEQRMRKARFQGVCFSEDSVLEVKGMLDEHAAGWGLKKEDELLVLTWKGHNVIFASAWLPS