Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09606.t1 | AES94520.2 | 95.8 | 309 | 13 | 0 | 1 | 309 | 1 | 309 | 1.70E-130 | 475.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09606.t1 | Q8VWK4 | 49.4 | 247 | 117 | 5 | 1 | 242 | 1 | 244 | 7.9e-55 | 215.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09606.t1 | G7K2G9 | 95.8 | 309 | 13 | 0 | 1 | 309 | 1 | 309 | 1.3e-130 | 475.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09606.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09606.t1 | MTR_5g015340 | 98.382 | 309 | 5 | 0 | 1 | 309 | 1 | 309 | 0.0 | 613 |
| MS.gene09606.t1 | MTR_5g015340 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 585 |
| MS.gene09606.t1 | MTR_5g015340 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 585 |
| MS.gene09606.t1 | MTR_4g097130 | 65.806 | 310 | 89 | 6 | 1 | 294 | 1 | 309 | 8.73e-105 | 309 |
| MS.gene09606.t1 | MTR_4g097130 | 65.696 | 309 | 89 | 6 | 1 | 293 | 1 | 308 | 3.91e-103 | 305 |
| MS.gene09606.t1 | MTR_4g097130 | 64.331 | 314 | 90 | 6 | 1 | 293 | 1 | 313 | 6.29e-102 | 302 |
| MS.gene09606.t1 | MTR_2g031870 | 48.133 | 241 | 118 | 5 | 1 | 236 | 1 | 239 | 9.28e-65 | 207 |
| MS.gene09606.t1 | MTR_8g494240 | 48.117 | 239 | 119 | 5 | 1 | 236 | 1 | 237 | 7.39e-63 | 202 |
| MS.gene09606.t1 | MTR_8g494240 | 48.117 | 239 | 119 | 5 | 1 | 236 | 1 | 237 | 9.28e-63 | 202 |
| MS.gene09606.t1 | MTR_8g494240 | 48.117 | 239 | 119 | 5 | 1 | 236 | 1 | 237 | 1.38e-61 | 202 |
| MS.gene09606.t1 | MTR_8g092810 | 40.316 | 253 | 137 | 4 | 1 | 240 | 1 | 252 | 6.99e-49 | 170 |
| MS.gene09606.t1 | MTR_2g031870 | 44.863 | 292 | 128 | 6 | 1 | 287 | 1 | 264 | 9.22e-43 | 149 |
| MS.gene09606.t1 | MTR_0095s0040 | 49.032 | 155 | 73 | 4 | 1 | 149 | 1 | 155 | 5.96e-37 | 133 |
| MS.gene09606.t1 | MTR_1g041765 | 66.292 | 89 | 28 | 1 | 1 | 89 | 1 | 87 | 1.75e-32 | 120 |
| MS.gene09606.t1 | MTR_8g018410 | 32.384 | 281 | 163 | 5 | 1 | 270 | 1 | 265 | 2.47e-31 | 119 |
| MS.gene09606.t1 | MTR_2g099610 | 72.414 | 58 | 16 | 0 | 1 | 58 | 1 | 58 | 2.69e-21 | 92.8 |
| MS.gene09606.t1 | MTR_1g088180 | 38.017 | 121 | 71 | 2 | 121 | 241 | 295 | 411 | 7.47e-14 | 72.4 |
| MS.gene09606.t1 | MTR_3g467090 | 60.377 | 53 | 17 | 2 | 5 | 56 | 569 | 618 | 1.64e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09606.t1 | AT5G67580 | 53.925 | 293 | 131 | 1 | 1 | 289 | 1 | 293 | 1.37e-75 | 234 |
| MS.gene09606.t1 | AT5G67580 | 53.925 | 293 | 131 | 1 | 1 | 289 | 1 | 293 | 1.37e-75 | 234 |
| MS.gene09606.t1 | AT1G49950 | 48.971 | 243 | 116 | 5 | 1 | 238 | 1 | 240 | 3.64e-70 | 221 |
| MS.gene09606.t1 | AT1G49950 | 48.971 | 243 | 116 | 5 | 1 | 238 | 1 | 240 | 3.64e-70 | 221 |
| MS.gene09606.t1 | AT1G49950 | 48.971 | 243 | 116 | 5 | 1 | 238 | 1 | 240 | 3.64e-70 | 221 |
| MS.gene09606.t1 | AT3G49850 | 51.186 | 295 | 132 | 5 | 1 | 289 | 1 | 289 | 3.49e-66 | 210 |
| MS.gene09606.t1 | AT3G49850 | 51.186 | 295 | 132 | 5 | 1 | 289 | 1 | 289 | 3.49e-66 | 210 |
| MS.gene09606.t1 | AT1G72740 | 33.798 | 287 | 167 | 5 | 1 | 284 | 1 | 267 | 1.41e-31 | 120 |
| MS.gene09606.t1 | AT1G72740 | 33.798 | 287 | 173 | 6 | 1 | 284 | 1 | 273 | 5.61e-30 | 115 |
| MS.gene09606.t1 | AT1G17520 | 35.500 | 200 | 112 | 3 | 1 | 187 | 1 | 196 | 1.51e-28 | 112 |
| MS.gene09606.t1 | AT1G17520 | 32.302 | 291 | 163 | 7 | 1 | 275 | 1 | 273 | 4.78e-28 | 110 |
| MS.gene09606.t1 | AT1G17520 | 35.821 | 201 | 111 | 4 | 1 | 187 | 1 | 197 | 6.61e-28 | 110 |
| MS.gene09606.t1 | AT1G17520 | 32.534 | 292 | 162 | 8 | 1 | 275 | 1 | 274 | 2.17e-27 | 109 |
Find 81 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAGCCTCTTTCAGTTTC+TGG | 0.037607 | 5.2:+7227168 | MS.gene09606:CDS |
| GGCTTAGGAGCTGCAACTTC+TGG | 0.214227 | 5.2:-7227153 | None:intergenic |
| AATGCAGAAGACTTAATATT+TGG | 0.225595 | 5.2:+7229706 | MS.gene09606:CDS |
| CTGTTCATGGATTGGTTTAT+AGG | 0.229623 | 5.2:+7230324 | MS.gene09606:CDS |
| CGCAAAATGGTGCTGAAATC+TGG | 0.244024 | 5.2:-7226733 | None:intergenic |
| TAACCTTGATATTTGTTCTT+TGG | 0.249384 | 5.2:-7227205 | None:intergenic |
| GAACCAGTTTGCTTTGATTC+AGG | 0.268324 | 5.2:-7230406 | None:intergenic |
| ACATAAATGTGACTGCAATA+TGG | 0.284211 | 5.2:+7227028 | MS.gene09606:CDS |
| TTCTGGATTATATTGAACTA+TGG | 0.296937 | 5.2:-7227136 | None:intergenic |
| CAGGTGAAGCCATTGAAGTT+TGG | 0.341585 | 5.2:-7230387 | None:intergenic |
| ATTTGAACGCATGCGCAAAA+TGG | 0.355071 | 5.2:-7226746 | None:intergenic |
| CATAAATGTGACTGCAATAT+GGG | 0.356271 | 5.2:+7227029 | MS.gene09606:CDS |
| TGACAATCGAGTCGAATATA+AGG | 0.364822 | 5.2:-7227746 | None:intergenic |
| TCAAATACGGGGCTGGAAAA+TGG | 0.375403 | 5.2:+7226692 | MS.gene09606:CDS |
| TCTGCAGTCCATTTCTGCTT+AGG | 0.379164 | 5.2:-7226640 | None:intergenic |
| AAGCCATTGAAGTTTGGTTC+GGG | 0.398061 | 5.2:-7230381 | None:intergenic |
| GAACTATGGCGGTCGAGGTT+GGG | 0.406154 | 5.2:-7227122 | None:intergenic |
| AGCAGCTGCAAAAGCAGTTG+CGG | 0.409911 | 5.2:+7229572 | MS.gene09606:CDS |
| GACAGTAACTTTATGAGGTT+TGG | 0.411444 | 5.2:-7228913 | None:intergenic |
| CGCCATTGCTGCTTATATAG+AGG | 0.411827 | 5.2:+7227800 | MS.gene09606:CDS |
| ATGCTCTTCCTTGTTACTCC+TGG | 0.423977 | 5.2:+7229431 | MS.gene09606:CDS |
| TGGGTGCTCCTAAGCAGAAA+TGG | 0.425779 | 5.2:+7226632 | MS.gene09606:CDS |
| GAAGAGGCAGCTCTGAAAGC+TGG | 0.428221 | 5.2:+7226664 | MS.gene09606:CDS |
| AGCTGCAAAAGCAGTTGCGG+AGG | 0.430575 | 5.2:+7229575 | MS.gene09606:CDS |
| GAAGCCATTGAAGTTTGGTT+CGG | 0.433007 | 5.2:-7230382 | None:intergenic |
| TTGTTGACAGTAACTTTATG+AGG | 0.436494 | 5.2:-7228918 | None:intergenic |
| TATCTAGGTAGGGCTGTTCA+TGG | 0.446835 | 5.2:+7230311 | MS.gene09606:intron |
| CCAGAAACTGAAAGAGGCTT+AGG | 0.456807 | 5.2:-7227168 | None:intergenic |
| AGGTAGGGCTGTTCATGGAT+TGG | 0.462926 | 5.2:+7230316 | MS.gene09606:intron |
| TCACCTGAATCAAAGCAAAC+TGG | 0.466576 | 5.2:+7230403 | MS.gene09606:CDS |
| CGACTCGATTGTCAAGTTGA+AGG | 0.467379 | 5.2:+7227755 | MS.gene09606:CDS |
| TGAACTATGGCGGTCGAGGT+TGG | 0.475508 | 5.2:-7227123 | None:intergenic |
| AAAGCTGGAGTAGTCAAATA+CGG | 0.485337 | 5.2:+7226679 | MS.gene09606:CDS |
| GTCAACAAAACTGAAGCATA+TGG | 0.488294 | 5.2:+7228933 | MS.gene09606:CDS |
| TAAGCTATGAACAGGACAAA+TGG | 0.495183 | 5.2:+7227001 | MS.gene09606:intron |
| TGACTGCAATATGGGGATCC+AGG | 0.496295 | 5.2:+7227037 | MS.gene09606:CDS |
| AAGCCTCTTTCAGTTTCTGG+TGG | 0.504900 | 5.2:+7227171 | MS.gene09606:CDS |
| CTTCCTTGTTACTCCTGGAA+GGG | 0.505904 | 5.2:+7229436 | MS.gene09606:CDS |
| GAAATCTGGGTCTGTAAGAA+TGG | 0.507475 | 5.2:-7226719 | None:intergenic |
| GCGGCAATGTCAGAACCCTT+TGG | 0.508392 | 5.2:-7227780 | None:intergenic |
| TCTTCCTTGTTACTCCTGGA+AGG | 0.509910 | 5.2:+7229435 | MS.gene09606:CDS |
| TTATGAGGTTTGGTGGAGAC+CGG | 0.510215 | 5.2:-7228903 | None:intergenic |
| GACAGGTAAATCATAAGTAC+AGG | 0.511866 | 5.2:+7229370 | MS.gene09606:intron |
| AGTAACTTTATGAGGTTTGG+TGG | 0.512273 | 5.2:-7228910 | None:intergenic |
| TGCTGTCTCAGCCTCAGCAA+TGG | 0.514472 | 5.2:-7229607 | None:intergenic |
| GGCTGAGACAGCAGCAAGGG+AGG | 0.514772 | 5.2:+7229617 | MS.gene09606:CDS |
| TGGCGGTCGAGGTTGGGTGG+TGG | 0.532625 | 5.2:-7227116 | None:intergenic |
| GGAGTAGTCAAATACGGGGC+TGG | 0.532847 | 5.2:+7226685 | MS.gene09606:CDS |
| CTTCCAAAGAACAAATATCA+AGG | 0.532967 | 5.2:+7227202 | MS.gene09606:CDS |
| AAACCCGAACCAAACTTCAA+TGG | 0.535228 | 5.2:+7230378 | MS.gene09606:CDS |
| AAGCTGGAGTAGTCAAATAC+GGG | 0.536563 | 5.2:+7226680 | MS.gene09606:CDS |
| GCAAAATGGTGCTGAAATCT+GGG | 0.539501 | 5.2:-7226732 | None:intergenic |
| ATATTGAACTATGGCGGTCG+AGG | 0.543535 | 5.2:-7227127 | None:intergenic |
| GAACAAAACTACAAAACAGT+TGG | 0.546905 | 5.2:+7230353 | MS.gene09606:CDS |
| CCTTGTTACTCCTGGAAGGG+AGG | 0.547136 | 5.2:+7229439 | MS.gene09606:CDS |
| GGCAGAAGCTGCCATTGCTG+AGG | 0.547830 | 5.2:+7229596 | MS.gene09606:CDS |
| TACCTCTATATAAGCAGCAA+TGG | 0.560953 | 5.2:-7227802 | None:intergenic |
| TGAGGCTGAGACAGCAGCAA+GGG | 0.562956 | 5.2:+7229614 | MS.gene09606:CDS |
| CTATGGCGGTCGAGGTTGGG+TGG | 0.567809 | 5.2:-7227119 | None:intergenic |
| TTCTGCTTAGGAGCACCCAT+TGG | 0.569658 | 5.2:-7226628 | None:intergenic |
| TACCTCAATAGGATCAATAC+CGG | 0.570066 | 5.2:+7228884 | MS.gene09606:intron |
| GAAATGGACTGCAGAAGAAG+AGG | 0.574527 | 5.2:+7226648 | MS.gene09606:CDS |
| TGTCAAGTTGAAGGAGCCAA+AGG | 0.577322 | 5.2:+7227764 | MS.gene09606:CDS |
| GTATTGAAACCATAGTCAAT+CGG | 0.577926 | 5.2:-7230435 | None:intergenic |
| GCGTTCAAATGTAGATCTCA+AGG | 0.582023 | 5.2:+7226759 | MS.gene09606:CDS |
| CTCTATATAAGCAGCAATGG+CGG | 0.582614 | 5.2:-7227799 | None:intergenic |
| GTCAAGTTGAAGGAGCCAAA+GGG | 0.586146 | 5.2:+7227765 | MS.gene09606:CDS |
| GAGGGGTGTGACAGCTCAAG+AGG | 0.591616 | 5.2:+7229542 | MS.gene09606:CDS |
| CCTCCCTTCCAGGAGTAACA+AGG | 0.596501 | 5.2:-7229439 | None:intergenic |
| GTTCCACCAGAAACTGAAAG+AGG | 0.604200 | 5.2:-7227174 | None:intergenic |
| CTGAGGCTGAGACAGCAGCA+AGG | 0.616768 | 5.2:+7229613 | MS.gene09606:CDS |
| AACAGCTGAAGCTGAAGCAG+AGG | 0.618779 | 5.2:+7229644 | MS.gene09606:CDS |
| GTTTGCAAAAGCAGCAACGA+AGG | 0.621698 | 5.2:+7229677 | MS.gene09606:CDS |
| CTGAAGCATATGGTGGCAAG+CGG | 0.627992 | 5.2:+7228943 | MS.gene09606:CDS |
| AATATGGGGATCCAGGCAGA+AGG | 0.633799 | 5.2:+7227044 | MS.gene09606:CDS |
| TGGATTATATTGAACTATGG+CGG | 0.635820 | 5.2:-7227133 | None:intergenic |
| GGCAAGCGGCAAATTAGTGA+AGG | 0.638026 | 5.2:+7228957 | MS.gene09606:CDS |
| GCTATGAACAGGACAAATGG+AGG | 0.639785 | 5.2:+7227004 | MS.gene09606:intron |
| ATAAATGTGACTGCAATATG+GGG | 0.648699 | 5.2:+7227030 | MS.gene09606:CDS |
| AACAAAACTGAAGCATATGG+TGG | 0.677408 | 5.2:+7228936 | MS.gene09606:CDS |
| AGCTGGAGTAGTCAAATACG+GGG | 0.718064 | 5.2:+7226681 | MS.gene09606:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAGCATTATAAAAAATT+AGG | - | chr5.2:7229985-7230004 | None:intergenic | 10.0% |
| !! | AGTTAACTTTATAAAAAATT+AGG | - | chr5.2:7229836-7229855 | None:intergenic | 10.0% |
| !! | ATTAGCATTATAAAAAATTA+GGG | - | chr5.2:7229984-7230003 | None:intergenic | 10.0% |
| !! | GTTAACTTTATAAAAAATTA+GGG | - | chr5.2:7229835-7229854 | None:intergenic | 10.0% |
| !! | AAGTAATTTAATATGATACT+TGG | + | chr5.2:7229317-7229336 | MS.gene09606:intron | 15.0% |
| !! | AGTAAAATTATTGTTATGTT+AGG | + | chr5.2:7226828-7226847 | MS.gene09606:intron | 15.0% |
| !! | AGTAATATAGGTTTATTAAA+AGG | - | chr5.2:7229279-7229298 | None:intergenic | 15.0% |
| !! | ATAAACAACATATAAATCAA+TGG | - | chr5.2:7228555-7228574 | None:intergenic | 15.0% |
| !! | TATTACTGTAAGATAAATAT+TGG | + | chr5.2:7229292-7229311 | MS.gene09606:intron | 15.0% |
| !! | TATTTATCTTACAGTAATAT+AGG | - | chr5.2:7229291-7229310 | None:intergenic | 15.0% |
| !!! | CATTAATTCATTTAAAACTT+TGG | - | chr5.2:7227403-7227422 | None:intergenic | 15.0% |
| !!! | TAAAAGTATTTTAAACTCTT+TGG | + | chr5.2:7228063-7228082 | MS.gene09606:intron | 15.0% |
| !! | ATATCCAATAAATTATTCAG+TGG | - | chr5.2:7229081-7229100 | None:intergenic | 20.0% |
| !! | ATTGGTAAAGAGAAATTAAT+TGG | + | chr5.2:7229147-7229166 | MS.gene09606:intron | 20.0% |
| !! | GAAAAACTTAGATATTAATG+AGG | + | chr5.2:7228417-7228436 | MS.gene09606:intron | 20.0% |
| !! | GATTATATATACCATTAATG+AGG | - | chr5.2:7227843-7227862 | None:intergenic | 20.0% |
| !! | TCATATTAAACTATATACGT+AGG | + | chr5.2:7226951-7226970 | MS.gene09606:intron | 20.0% |
| !! | TGAATACAAAAAATCTGTTA+TGG | + | chr5.2:7229185-7229204 | MS.gene09606:intron | 20.0% |
| !! | TTACACTTTATAGAACTAAA+TGG | + | chr5.2:7227251-7227270 | MS.gene09606:intron | 20.0% |
| !! | TTATTGGATATTGAATGTTA+TGG | + | chr5.2:7229090-7229109 | MS.gene09606:intron | 20.0% |
| !!! | AAAAAACTGCTCTAATATTT+TGG | - | chr5.2:7228639-7228658 | None:intergenic | 20.0% |
| !!! | AAACATTTTGTAGTTGTAAT+TGG | - | chr5.2:7227588-7227607 | None:intergenic | 20.0% |
| !!! | TCTTTTTAATAATGACAGAT+TGG | + | chr5.2:7227719-7227738 | MS.gene09606:intron | 20.0% |
| !!! | TTTTAACACAATTACAAACA+TGG | - | chr5.2:7230085-7230104 | None:intergenic | 20.0% |
| ! | AATGCAGAAGACTTAATATT+TGG | + | chr5.2:7229706-7229725 | MS.gene09606:CDS | 25.0% |
| ! | AGTTATTAGCAGAAAATGAT+TGG | + | chr5.2:7229129-7229148 | MS.gene09606:intron | 25.0% |
| ! | ATGCATTAAGTAATGTTTCT+TGG | - | chr5.2:7229744-7229763 | None:intergenic | 25.0% |
| ! | GTTCTATCATAAACCTTATT+TGG | - | chr5.2:7228445-7228464 | None:intergenic | 25.0% |
| ! | TAACCTTGATATTTGTTCTT+TGG | - | chr5.2:7227208-7227227 | None:intergenic | 25.0% |
| ! | TAACTGTTTACTTTATCACA+AGG | + | chr5.2:7226887-7226906 | MS.gene09606:intron | 25.0% |
| ! | TATAATAGTTATCAGCTCTA+AGG | + | chr5.2:7227352-7227371 | MS.gene09606:intron | 25.0% |
| ! | TATGAAGGAATTGGAATAAA+TGG | - | chr5.2:7227966-7227985 | None:intergenic | 25.0% |
| ! | TATTAATGAGGATCCAAATA+AGG | + | chr5.2:7228429-7228448 | MS.gene09606:intron | 25.0% |
| ! | TTAAGTAATGTTTCTTGGTA+AGG | - | chr5.2:7229739-7229758 | None:intergenic | 25.0% |
| ! | TTCTGGATTATATTGAACTA+TGG | - | chr5.2:7227139-7227158 | None:intergenic | 25.0% |
| !! | AAACAAGTTGCAAACAATTT+TGG | + | chr5.2:7227427-7227446 | MS.gene09606:intron | 25.0% |
| !! | GTTTCTCATATAGTTTTTCT+AGG | - | chr5.2:7228391-7228410 | None:intergenic | 25.0% |
| !!! | ATGTTGAGCTTTTAAAAATG+AGG | + | chr5.2:7229523-7229542 | MS.gene09606:CDS | 25.0% |
| !!! | CATCAATTTGAGATTTTGAA+AGG | - | chr5.2:7229506-7229525 | None:intergenic | 25.0% |
| !!! | TGGTGGTTATTTTCATTTTT+CGG | - | chr5.2:7227102-7227121 | None:intergenic | 25.0% |
| !!! | TGTTGAGCTTTTAAAAATGA+GGG | + | chr5.2:7229524-7229543 | MS.gene09606:CDS | 25.0% |
| !!! | TTTGTTTTAAATGTTCTAGC+AGG | + | chr5.2:7226787-7226806 | MS.gene09606:intron | 25.0% |
| AAAACAAGCATAGCAAAGAT+GGG | + | chr5.2:7228157-7228176 | MS.gene09606:intron | 30.0% | |
| AAATATCTTTCGTATTCCCA+CGG | + | chr5.2:7230139-7230158 | MS.gene09606:intron | 30.0% | |
| AAATTCACCACAATCTTAAG+GGG | - | chr5.2:7227652-7227671 | None:intergenic | 30.0% | |
| AACAAAAATCCCCTAAGATT+TGG | + | chr5.2:7230248-7230267 | MS.gene09606:intron | 30.0% | |
| AATACATTCCCAGGAATATA+TGG | + | chr5.2:7230043-7230062 | MS.gene09606:intron | 30.0% | |
| ACATAAATGTGACTGCAATA+TGG | + | chr5.2:7227028-7227047 | MS.gene09606:CDS | 30.0% | |
| ACATATAAATCAATGGACCT+AGG | - | chr5.2:7228548-7228567 | None:intergenic | 30.0% | |
| AGAAACATTGCCAAATCTTA+GGG | - | chr5.2:7230261-7230280 | None:intergenic | 30.0% | |
| ATAAATGTGACTGCAATATG+GGG | + | chr5.2:7227030-7227049 | MS.gene09606:CDS | 30.0% | |
| CAAATTCACCACAATCTTAA+GGG | - | chr5.2:7227653-7227672 | None:intergenic | 30.0% | |
| CATAAATGTGACTGCAATAT+GGG | + | chr5.2:7227029-7227048 | MS.gene09606:CDS | 30.0% | |
| CTGAAATTGTTTACCTCAAT+AGG | + | chr5.2:7228873-7228892 | MS.gene09606:intron | 30.0% | |
| CTGTCCACTGAATAATTTAT+TGG | + | chr5.2:7229074-7229093 | MS.gene09606:intron | 30.0% | |
| CTTATGATTTACCTGTCATT+AGG | - | chr5.2:7229367-7229386 | None:intergenic | 30.0% | |
| CTTCCAAAGAACAAATATCA+AGG | + | chr5.2:7227202-7227221 | MS.gene09606:CDS | 30.0% | |
| GAAATAATACTGCAATGCAA+AGG | + | chr5.2:7230187-7230206 | MS.gene09606:intron | 30.0% | |
| GAACAAAACTACAAAACAGT+TGG | + | chr5.2:7230353-7230372 | MS.gene09606:CDS | 30.0% | |
| GTTAGAACTAGTTGAAATTG+TGG | - | chr5.2:7228585-7228604 | None:intergenic | 30.0% | |
| TAAAACAAGCATAGCAAAGA+TGG | + | chr5.2:7228156-7228175 | MS.gene09606:intron | 30.0% | |
| TAAATGTTCTAGCAGGTTAT+AGG | + | chr5.2:7226794-7226813 | MS.gene09606:intron | 30.0% | |
| TAGAAACATTGCCAAATCTT+AGG | - | chr5.2:7230262-7230281 | None:intergenic | 30.0% | |
| TATAGGTCAAACTGTTATGA+AGG | - | chr5.2:7227981-7228000 | None:intergenic | 30.0% | |
| TATATTCCTGGGAATGTATT+TGG | - | chr5.2:7230043-7230062 | None:intergenic | 30.0% | |
| TCAAACTGTTATGAAGGAAT+TGG | - | chr5.2:7227975-7227994 | None:intergenic | 30.0% | |
| TCAGAAAACAATATACCTTG+TGG | - | chr5.2:7227467-7227486 | None:intergenic | 30.0% | |
| TGGATTATATTGAACTATGG+CGG | - | chr5.2:7227136-7227155 | None:intergenic | 30.0% | |
| TTGTTGACAGTAACTTTATG+AGG | - | chr5.2:7228921-7228940 | None:intergenic | 30.0% | |
| ! | CATTTAAAACTTTGGTATGC+TGG | - | chr5.2:7227395-7227414 | None:intergenic | 30.0% |
| ! | TGATGATTCTTTTCTAAGCA+TGG | + | chr5.2:7227511-7227530 | MS.gene09606:intron | 30.0% |
| !! | ACTAGTTCTAACATGTAACT+CGG | + | chr5.2:7228593-7228612 | MS.gene09606:intron | 30.0% |
| !! | GGTGGTTATTTTCATTTTTC+GGG | - | chr5.2:7227101-7227120 | None:intergenic | 30.0% |
| !! | GTGGTTATTTTCATTTTTCG+GGG | - | chr5.2:7227100-7227119 | None:intergenic | 30.0% |
| !! | GTTGAGCTTTTAAAAATGAG+GGG | + | chr5.2:7229525-7229544 | MS.gene09606:CDS | 30.0% |
| !! | TAGGAGAAAGCATTCAAAAT+GGG | - | chr5.2:7229801-7229820 | None:intergenic | 30.0% |
| !! | TGGTTATTTTCATTTTTCGG+GGG | - | chr5.2:7227099-7227118 | None:intergenic | 30.0% |
| !! | TTGAGATTTTGAAAGGATGT+TGG | - | chr5.2:7229499-7229518 | None:intergenic | 30.0% |
| !!! | AGAGCAGTTTTTTCATTTGA+TGG | + | chr5.2:7228646-7228665 | MS.gene09606:intron | 30.0% |
| !!! | ATATTTTGGTACCAGAAGAA+TGG | - | chr5.2:7228625-7228644 | None:intergenic | 30.0% |
| !!! | TGGCAATGTTTTTTCAATGA+TGG | + | chr5.2:7227687-7227706 | MS.gene09606:intron | 30.0% |
| AAACAAGCATAGCAAAGATG+GGG | + | chr5.2:7228158-7228177 | MS.gene09606:intron | 35.0% | |
| AAACTTGGTTTCTTGGAACT+TGG | + | chr5.2:7229001-7229020 | MS.gene09606:intron | 35.0% | |
| AAAGCTGGAGTAGTCAAATA+CGG | + | chr5.2:7226679-7226698 | MS.gene09606:CDS | 35.0% | |
| AACAAAACTGAAGCATATGG+TGG | + | chr5.2:7228936-7228955 | MS.gene09606:CDS | 35.0% | |
| AACATTAGAGAGAGAGAGTT+GGG | + | chr5.2:7228232-7228251 | MS.gene09606:intron | 35.0% | |
| AAGAACCAACACGAGAATAA+CGG | + | chr5.2:7228102-7228121 | MS.gene09606:intron | 35.0% | |
| AATTAGGGAAAGTAACCACT+AGG | - | chr5.2:7229820-7229839 | None:intergenic | 35.0% | |
| AATTTGCAACGTCAATCATG+TGG | + | chr5.2:7227667-7227686 | MS.gene09606:intron | 35.0% | |
| ACAATATCCCCTTAAGATTG+TGG | + | chr5.2:7227642-7227661 | MS.gene09606:intron | 35.0% | |
| ACCTACAGTAGAAATGATAG+TGG | + | chr5.2:7228260-7228279 | MS.gene09606:intron | 35.0% | |
| ACTAAATGGTCTGTGATTCT+TGG | + | chr5.2:7227265-7227284 | MS.gene09606:intron | 35.0% | |
| ACTGAGTGAGGAAAAAAACT+TGG | - | chr5.2:7227889-7227908 | None:intergenic | 35.0% | |
| AGTAACTTTATGAGGTTTGG+TGG | - | chr5.2:7228913-7228932 | None:intergenic | 35.0% | |
| AGTTAACCAAATACATTCCC+AGG | + | chr5.2:7230034-7230053 | MS.gene09606:intron | 35.0% | |
| ATGCATTGAGAAACGTTTCT+AGG | - | chr5.2:7229893-7229912 | None:intergenic | 35.0% | |
| ATTCCCAGGAATATATGGTA+AGG | + | chr5.2:7230048-7230067 | MS.gene09606:intron | 35.0% | |
| CCATAGAGAATAAAAACCGT+GGG | - | chr5.2:7230158-7230177 | None:intergenic | 35.0% | |
| CTCTCCTTATACAGAATCTA+CGG | - | chr5.2:7228324-7228343 | None:intergenic | 35.0% | |
| GAAACATTGCCAAATCTTAG+GGG | - | chr5.2:7230260-7230279 | None:intergenic | 35.0% | |
| GACAGGTAAATCATAAGTAC+AGG | + | chr5.2:7229370-7229389 | MS.gene09606:intron | 35.0% | |
| GACAGTAACTTTATGAGGTT+TGG | - | chr5.2:7228916-7228935 | None:intergenic | 35.0% | |
| GCAAATTCACCACAATCTTA+AGG | - | chr5.2:7227654-7227673 | None:intergenic | 35.0% | |
| GGGAGACTGAATAAAACTAT+AGG | - | chr5.2:7227998-7228017 | None:intergenic | 35.0% | |
| GTCAACAAAACTGAAGCATA+TGG | + | chr5.2:7228933-7228952 | MS.gene09606:CDS | 35.0% | |
| GTTACTGAAACTTGGTTTCT+TGG | + | chr5.2:7228994-7229013 | MS.gene09606:intron | 35.0% | |
| TAAGCTATGAACAGGACAAA+TGG | + | chr5.2:7227001-7227020 | MS.gene09606:intron | 35.0% | |
| TACCATTAATGAGGCAATCA+AGG | - | chr5.2:7227834-7227853 | None:intergenic | 35.0% | |
| TACCTCAATAGGATCAATAC+CGG | + | chr5.2:7228884-7228903 | MS.gene09606:intron | 35.0% | |
| TACCTCTATATAAGCAGCAA+TGG | - | chr5.2:7227805-7227824 | None:intergenic | 35.0% | |
| TACCTTGATTGCCTCATTAA+TGG | + | chr5.2:7227829-7227848 | MS.gene09606:intron | 35.0% | |
| TACTCTTCGTTACTGAAACT+TGG | + | chr5.2:7228986-7229005 | MS.gene09606:intron | 35.0% | |
| TAGTGGGAGTGAAATTCTAT+TGG | + | chr5.2:7229240-7229259 | MS.gene09606:intron | 35.0% | |
| TATAAGGAGAGTAGATCAGA+TGG | + | chr5.2:7228333-7228352 | MS.gene09606:intron | 35.0% | |
| TCCACTATCATTTCTACTGT+AGG | - | chr5.2:7228264-7228283 | None:intergenic | 35.0% | |
| TCCATAGAGAATAAAAACCG+TGG | - | chr5.2:7230159-7230178 | None:intergenic | 35.0% | |
| TCTCCTTATACAGAATCTAC+GGG | - | chr5.2:7228323-7228342 | None:intergenic | 35.0% | |
| TGACAATCGAGTCGAATATA+AGG | - | chr5.2:7227749-7227768 | None:intergenic | 35.0% | |
| TGTTATGGTTACACTGTTAC+TGG | + | chr5.2:7229105-7229124 | MS.gene09606:intron | 35.0% | |
| TTCCCAGGAATATATGGTAA+GGG | + | chr5.2:7230049-7230068 | MS.gene09606:intron | 35.0% | |
| TTCCCTTACCATATATTCCT+GGG | - | chr5.2:7230054-7230073 | None:intergenic | 35.0% | |
| ! | AATGGTCTGTCATTTGAGAT+AGG | - | chr5.2:7227948-7227967 | None:intergenic | 35.0% |
| ! | ACGGTTTTTATTCTCTATGG+AGG | + | chr5.2:7230158-7230177 | MS.gene09606:intron | 35.0% |
| ! | AGTCTCCCTCTAGAAAATAT+CGG | + | chr5.2:7228010-7228029 | MS.gene09606:intron | 35.0% |
| ! | ATGTGCTTTAAGCTATGAAC+AGG | + | chr5.2:7226993-7227012 | MS.gene09606:intron | 35.0% |
| ! | CGGTTTTTATTCTCTATGGA+GGG | + | chr5.2:7230159-7230178 | MS.gene09606:intron | 35.0% |
| ! | GCTATAATTTGTGTACCACA+AGG | + | chr5.2:7227449-7227468 | MS.gene09606:intron | 35.0% |
| ! | GGTTTTTATTCTCTATGGAG+GGG | + | chr5.2:7230160-7230179 | MS.gene09606:intron | 35.0% |
| ! | GTTTTTATTCTCTATGGAGG+GGG | + | chr5.2:7230161-7230180 | MS.gene09606:intron | 35.0% |
| ! | TCATTTGAGATAGGATAGTG+TGG | - | chr5.2:7227939-7227958 | None:intergenic | 35.0% |
| ! | TCTTTTCCTGCAAACTTTTC+TGG | + | chr5.2:7229040-7229059 | MS.gene09606:intron | 35.0% |
| ! | TTTTGAATGCTTTCTCCTAG+TGG | + | chr5.2:7229802-7229821 | MS.gene09606:intron | 35.0% |
| !! | AGCATTCAAAATGGGCTAAA+AGG | - | chr5.2:7229793-7229812 | None:intergenic | 35.0% |
| !! | CAGGAAAAGATACTGCTTTT+TGG | - | chr5.2:7229030-7229049 | None:intergenic | 35.0% |
| !! | CTAGGAGAAAGCATTCAAAA+TGG | - | chr5.2:7229802-7229821 | None:intergenic | 35.0% |
| !! | CTAGTTCTAACATGTAACTC+GGG | + | chr5.2:7228594-7228613 | MS.gene09606:intron | 35.0% |
| !! | CTGTTCATGGATTGGTTTAT+AGG | + | chr5.2:7230324-7230343 | MS.gene09606:CDS | 35.0% |
| !! | GTAGAAATGATAGTGGAAAC+AGG | + | chr5.2:7228267-7228286 | MS.gene09606:intron | 35.0% |
| !! | TAGGAGAAAGCATTCAAGAT+GGG | - | chr5.2:7229950-7229969 | None:intergenic | 35.0% |
| !! | TAGTTCTAACATGTAACTCG+GGG | + | chr5.2:7228595-7228614 | MS.gene09606:intron | 35.0% |
| !! | TCTGCTTTTGGAGAATCTTT+TGG | - | chr5.2:7229465-7229484 | None:intergenic | 35.0% |
| !!! | TTATTTTCATTTTTCGGGGG+TGG | - | chr5.2:7227096-7227115 | None:intergenic | 35.0% |
| AAACCCGAACCAAACTTCAA+TGG | + | chr5.2:7230378-7230397 | MS.gene09606:CDS | 40.0% | |
| AAGCTGGAGTAGTCAAATAC+GGG | + | chr5.2:7226680-7226699 | MS.gene09606:CDS | 40.0% | |
| AATGGTCTGTGATTCTTGGT+TGG | + | chr5.2:7227269-7227288 | MS.gene09606:intron | 40.0% | |
| ACACGCACAAACTCACATAT+AGG | + | chr5.2:7227560-7227579 | MS.gene09606:intron | 40.0% | |
| ACATTAGAGAGAGAGAGTTG+GGG | + | chr5.2:7228233-7228252 | MS.gene09606:intron | 40.0% | |
| ACATTCCGTTATTCTCGTGT+TGG | - | chr5.2:7228110-7228129 | None:intergenic | 40.0% | |
| AGACCCGTAGATTCTGTATA+AGG | + | chr5.2:7228317-7228336 | MS.gene09606:intron | 40.0% | |
| AGCCTTTCTTAAACACAGGA+AGG | - | chr5.2:7228739-7228758 | None:intergenic | 40.0% | |
| AGTCTGACATACCTAATGAC+AGG | + | chr5.2:7229353-7229372 | MS.gene09606:intron | 40.0% | |
| ATATGGGCATTCTCTGTAGT+GGG | + | chr5.2:7229224-7229243 | MS.gene09606:intron | 40.0% | |
| ATTTGAACGCATGCGCAAAA+TGG | - | chr5.2:7226749-7226768 | None:intergenic | 40.0% | |
| CAACATTAGAGAGAGAGAGT+TGG | + | chr5.2:7228231-7228250 | MS.gene09606:intron | 40.0% | |
| CTCTATATAAGCAGCAATGG+CGG | - | chr5.2:7227802-7227821 | None:intergenic | 40.0% | |
| GAAATCTGGGTCTGTAAGAA+TGG | - | chr5.2:7226722-7226741 | None:intergenic | 40.0% | |
| GAAGCCATTGAAGTTTGGTT+CGG | - | chr5.2:7230385-7230404 | None:intergenic | 40.0% | |
| GCGTTCAAATGTAGATCTCA+AGG | + | chr5.2:7226759-7226778 | MS.gene09606:CDS | 40.0% | |
| GCTAAGCCTTTCTTAAACAC+AGG | - | chr5.2:7228743-7228762 | None:intergenic | 40.0% | |
| GTCATTAGGTATGTCAGACT+AGG | - | chr5.2:7229353-7229372 | None:intergenic | 40.0% | |
| GTGGTAAGACTAGACAAGAT+AGG | + | chr5.2:7228197-7228216 | MS.gene09606:intron | 40.0% | |
| GTTCCCTTACCATATATTCC+TGG | - | chr5.2:7230055-7230074 | None:intergenic | 40.0% | |
| GTTGGAAATGTTTCTCTCCT+AGG | + | chr5.2:7228528-7228547 | MS.gene09606:intron | 40.0% | |
| TAGGGCGCATTATGAAAAGA+TGG | - | chr5.2:7230293-7230312 | None:intergenic | 40.0% | |
| TAGTCGAACTACGCACATAT+GGG | + | chr5.2:7229208-7229227 | MS.gene09606:intron | 40.0% | |
| TCACCTGAATCAAAGCAAAC+TGG | + | chr5.2:7230403-7230422 | MS.gene09606:CDS | 40.0% | |
| TCTTGAATGCTTTCTCCTAG+TGG | + | chr5.2:7229951-7229970 | MS.gene09606:intron | 40.0% | |
| TGCCTTCCTGTGTTTAAGAA+AGG | + | chr5.2:7228734-7228753 | MS.gene09606:intron | 40.0% | |
| TTGTAAACTTGATCGCAAGC+AGG | - | chr5.2:7228040-7228059 | None:intergenic | 40.0% | |
| TTTCATAATGCGCCCTATCT+AGG | + | chr5.2:7230296-7230315 | MS.gene09606:intron | 40.0% | |
| ! | AAGCCATTGAAGTTTGGTTC+GGG | - | chr5.2:7230384-7230403 | None:intergenic | 40.0% |
| ! | CCCACGGTTTTTATTCTCTA+TGG | + | chr5.2:7230155-7230174 | MS.gene09606:intron | 40.0% |
| ! | GAACCAGTTTGCTTTGATTC+AGG | - | chr5.2:7230409-7230428 | None:intergenic | 40.0% |
| ! | GAGAATAACGGAATGTTGAG+CGG | + | chr5.2:7228114-7228133 | MS.gene09606:intron | 40.0% |
| ! | GCAAAATGGTGCTGAAATCT+GGG | - | chr5.2:7226735-7226754 | None:intergenic | 40.0% |
| ! | GCATCAGTTTTCTCTGCTTT+TGG | - | chr5.2:7229477-7229496 | None:intergenic | 40.0% |
| ! | GCTGACCGATATTTTCTAGA+GGG | - | chr5.2:7228018-7228037 | None:intergenic | 40.0% |
| ! | TAAGGCTTGATGGTTGTTGT+TGG | + | chr5.2:7228510-7228529 | MS.gene09606:intron | 40.0% |
| !! | AGCATTCAAGATGGGCTAAA+AGG | - | chr5.2:7229942-7229961 | None:intergenic | 40.0% |
| !! | CTAGGAGAAAGCATTCAAGA+TGG | - | chr5.2:7229951-7229970 | None:intergenic | 40.0% |
| !! | TCGTGTTGGTTCTTATACAG+AGG | - | chr5.2:7228096-7228115 | None:intergenic | 40.0% |
| !!! | GGAAGAGCATCTTCTTTTCT+CGG | - | chr5.2:7229421-7229440 | None:intergenic | 40.0% |
| AAGGAGAGTAGATCAGATGG+AGG | + | chr5.2:7228336-7228355 | MS.gene09606:intron | 45.0% | |
| AGCTGGAGTAGTCAAATACG+GGG | + | chr5.2:7226681-7226700 | MS.gene09606:CDS | 45.0% | |
| ATAATGCGCCCTATCTAGGT+AGG | + | chr5.2:7230300-7230319 | MS.gene09606:intron | 45.0% | |
| ATATTGAACTATGGCGGTCG+AGG | - | chr5.2:7227130-7227149 | None:intergenic | 45.0% | |
| ATGAACAGCCCTACCTAGAT+AGG | - | chr5.2:7230312-7230331 | None:intergenic | 45.0% | |
| ATGCTCTTCCTTGTTACTCC+TGG | + | chr5.2:7229431-7229450 | MS.gene09606:CDS | 45.0% | |
| CAGGTGAAGCCATTGAAGTT+TGG | - | chr5.2:7230390-7230409 | None:intergenic | 45.0% | |
| CATATGGGCATTCTCTGTAG+TGG | + | chr5.2:7229223-7229242 | MS.gene09606:intron | 45.0% | |
| CCAGAAACTGAAAGAGGCTT+AGG | - | chr5.2:7227171-7227190 | None:intergenic | 45.0% | |
| CCTAAGCCTCTTTCAGTTTC+TGG | + | chr5.2:7227168-7227187 | MS.gene09606:CDS | 45.0% | |
| CTTAGTGGGATAAGGCTTGA+TGG | + | chr5.2:7228500-7228519 | MS.gene09606:intron | 45.0% | |
| CTTCCTTGTTACTCCTGGAA+GGG | + | chr5.2:7229436-7229455 | MS.gene09606:CDS | 45.0% | |
| GAGGATAGTCAGATCACTAG+AGG | + | chr5.2:7228355-7228374 | MS.gene09606:intron | 45.0% | |
| GCTATGAACAGGACAAATGG+AGG | + | chr5.2:7227004-7227023 | MS.gene09606:intron | 45.0% | |
| GTAACTGATCTCACTGAGTG+AGG | - | chr5.2:7227901-7227920 | None:intergenic | 45.0% | |
| GTAGTCGAACTACGCACATA+TGG | + | chr5.2:7229207-7229226 | MS.gene09606:intron | 45.0% | |
| GTTCCACCAGAAACTGAAAG+AGG | - | chr5.2:7227177-7227196 | None:intergenic | 45.0% | |
| GTTTGCAAAAGCAGCAACGA+AGG | + | chr5.2:7229677-7229696 | MS.gene09606:CDS | 45.0% | |
| TAATGCGCCCTATCTAGGTA+GGG | + | chr5.2:7230301-7230320 | MS.gene09606:intron | 45.0% | |
| TATCTAGGTAGGGCTGTTCA+TGG | + | chr5.2:7230311-7230330 | MS.gene09606:intron | 45.0% | |
| TCAAATACGGGGCTGGAAAA+TGG | + | chr5.2:7226692-7226711 | MS.gene09606:CDS | 45.0% | |
| TCTGCAGTCCATTTCTGCTT+AGG | - | chr5.2:7226643-7226662 | None:intergenic | 45.0% | |
| TCTTCCTTGTTACTCCTGGA+AGG | + | chr5.2:7229435-7229454 | MS.gene09606:CDS | 45.0% | |
| TGAACAGCCCTACCTAGATA+GGG | - | chr5.2:7230311-7230330 | None:intergenic | 45.0% | |
| TTATTCTCTATGGAGGGGGT+GGG | + | chr5.2:7230165-7230184 | MS.gene09606:intron | 45.0% | |
| TTTATTCTCTATGGAGGGGG+TGG | + | chr5.2:7230164-7230183 | MS.gene09606:intron | 45.0% | |
| ! | AAGCCTCTTTCAGTTTCTGG+TGG | + | chr5.2:7227171-7227190 | MS.gene09606:CDS | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5.2:7228498-7228517 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5.2:7228499-7228518 | None:intergenic | 45.0% |
| ! | CGCAAAATGGTGCTGAAATC+TGG | - | chr5.2:7226736-7226755 | None:intergenic | 45.0% |
| ! | CGCCATTGCTGCTTATATAG+AGG | + | chr5.2:7227800-7227819 | MS.gene09606:CDS | 45.0% |
| ! | GAGCTTAGGGGAACTTGTTT+AGG | - | chr5.2:7228684-7228703 | None:intergenic | 45.0% |
| ! | GGCTGACCGATATTTTCTAG+AGG | - | chr5.2:7228019-7228038 | None:intergenic | 45.0% |
| ! | GGTTTGAGATGCTACTGCTA+CGG | + | chr5.2:7226849-7226868 | MS.gene09606:intron | 45.0% |
| ! | GTTAAGAGCTTGTTCTTGCC+AGG | - | chr5.2:7228710-7228729 | None:intergenic | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | - | chr5.2:7228500-7228519 | None:intergenic | 45.0% |
| !! | CGACTCGATTGTCAAGTTGA+AGG | + | chr5.2:7227755-7227774 | MS.gene09606:CDS | 45.0% |
| !! | CTGCAAACTTTTCTGGCGAA+GGG | + | chr5.2:7229047-7229066 | MS.gene09606:intron | 45.0% |
| !! | GAAATGGACTGCAGAAGAAG+AGG | + | chr5.2:7226648-7226667 | MS.gene09606:CDS | 45.0% |
| !! | GACCGGTATTGATCCTATTG+AGG | - | chr5.2:7228889-7228908 | None:intergenic | 45.0% |
| !! | GTCAAGTTGAAGGAGCCAAA+GGG | + | chr5.2:7227765-7227784 | MS.gene09606:CDS | 45.0% |
| !! | TGTCAAGTTGAAGGAGCCAA+AGG | + | chr5.2:7227764-7227783 | MS.gene09606:CDS | 45.0% |
| !! | TTATGAGGTTTGGTGGAGAC+CGG | - | chr5.2:7228906-7228925 | None:intergenic | 45.0% |
| !!! | TTTCATTTTTCGGGGGTGGT+AGG | - | chr5.2:7227092-7227111 | None:intergenic | 45.0% |
| AACAGCTGAAGCTGAAGCAG+AGG | + | chr5.2:7229644-7229663 | MS.gene09606:CDS | 50.0% | |
| AATATGGGGATCCAGGCAGA+AGG | + | chr5.2:7227044-7227063 | MS.gene09606:CDS | 50.0% | |
| ACTAAGTGGGGTCTGCTACA+TGG | - | chr5.2:7228486-7228505 | None:intergenic | 50.0% | |
| AGACCCCACTTAGTGGGATA+AGG | + | chr5.2:7228492-7228511 | MS.gene09606:intron | 50.0% | |
| AGCAGCTGCAAAAGCAGTTG+CGG | + | chr5.2:7229572-7229591 | MS.gene09606:CDS | 50.0% | |
| AGGTAGGGCTGTTCATGGAT+TGG | + | chr5.2:7230316-7230335 | MS.gene09606:intron | 50.0% | |
| AGTCAGATCACTAGAGGCAG+AGG | + | chr5.2:7228361-7228380 | MS.gene09606:intron | 50.0% | |
| ATGTAGCAGACCCCACTTAG+TGG | + | chr5.2:7228485-7228504 | MS.gene09606:intron | 50.0% | |
| CAAAGATGGGGATGTTGCGT+TGG | + | chr5.2:7228170-7228189 | MS.gene09606:intron | 50.0% | |
| CCTTCGCCAGAAAAGTTTGC+AGG | - | chr5.2:7229049-7229068 | None:intergenic | 50.0% | |
| CTGAAGCATATGGTGGCAAG+CGG | + | chr5.2:7228943-7228962 | MS.gene09606:CDS | 50.0% | |
| GGCAAGCGGCAAATTAGTGA+AGG | + | chr5.2:7228957-7228976 | MS.gene09606:CDS | 50.0% | |
| TCTTGCCAGGTGAGAGCTTA+GGG | - | chr5.2:7228697-7228716 | None:intergenic | 50.0% | |
| TGACTGCAATATGGGGATCC+AGG | + | chr5.2:7227037-7227056 | MS.gene09606:CDS | 50.0% | |
| TGGGTGCTCCTAAGCAGAAA+TGG | + | chr5.2:7226632-7226651 | MS.gene09606:CDS | 50.0% | |
| TGTAGCAGACCCCACTTAGT+GGG | + | chr5.2:7228486-7228505 | MS.gene09606:intron | 50.0% | |
| TTCTTGCCAGGTGAGAGCTT+AGG | - | chr5.2:7228698-7228717 | None:intergenic | 50.0% | |
| ! | AATCTTTTGGCCTCCCTTCC+AGG | - | chr5.2:7229452-7229471 | None:intergenic | 50.0% |
| ! | TGCAAGTTTTGCCTTCTGCC+TGG | - | chr5.2:7227058-7227077 | None:intergenic | 50.0% |
| !! | ATGATAGTGGAAACAGGCGC+AGG | + | chr5.2:7228273-7228292 | MS.gene09606:intron | 50.0% |
| !! | CCTGCAAACTTTTCTGGCGA+AGG | + | chr5.2:7229046-7229065 | MS.gene09606:intron | 50.0% |
| AGCTGCAAAAGCAGTTGCGG+AGG | + | chr5.2:7229575-7229594 | MS.gene09606:CDS | 55.0% | |
| AGTTCCCCTAAGCTCTCACC+TGG | + | chr5.2:7228689-7228708 | MS.gene09606:intron | 55.0% | |
| CCTCCCTTCCAGGAGTAACA+AGG | - | chr5.2:7229442-7229461 | None:intergenic | 55.0% | |
| CCTTGTTACTCCTGGAAGGG+AGG | + | chr5.2:7229439-7229458 | MS.gene09606:CDS | 55.0% | |
| CTCGGGGACTTCCATTCTTC+TGG | + | chr5.2:7228611-7228630 | MS.gene09606:intron | 55.0% | |
| CTTGCCAGGTGAGAGCTTAG+GGG | - | chr5.2:7228696-7228715 | None:intergenic | 55.0% | |
| GAACTATGGCGGTCGAGGTT+GGG | - | chr5.2:7227125-7227144 | None:intergenic | 55.0% | |
| GCGGCAATGTCAGAACCCTT+TGG | - | chr5.2:7227783-7227802 | None:intergenic | 55.0% | |
| GGAGTAGTCAAATACGGGGC+TGG | + | chr5.2:7226685-7226704 | MS.gene09606:CDS | 55.0% | |
| GGCTTAGGAGCTGCAACTTC+TGG | - | chr5.2:7227156-7227175 | None:intergenic | 55.0% | |
| GGGATGTTGCGTTGGATGTG+TGG | + | chr5.2:7228178-7228197 | MS.gene09606:intron | 55.0% | |
| TGAACTATGGCGGTCGAGGT+TGG | - | chr5.2:7227126-7227145 | None:intergenic | 55.0% | |
| TGAGGCTGAGACAGCAGCAA+GGG | + | chr5.2:7229614-7229633 | MS.gene09606:CDS | 55.0% | |
| TGCTGTCTCAGCCTCAGCAA+TGG | - | chr5.2:7229610-7229629 | None:intergenic | 55.0% | |
| ! | ATAGTGGAAACAGGCGCAGG+TGG | + | chr5.2:7228276-7228295 | MS.gene09606:intron | 55.0% |
| !! | GAAGAGGCAGCTCTGAAAGC+TGG | + | chr5.2:7226664-7226683 | MS.gene09606:CDS | 55.0% |
| CTGAGGCTGAGACAGCAGCA+AGG | + | chr5.2:7229613-7229632 | MS.gene09606:CDS | 60.0% | |
| GGCAGAAGCTGCCATTGCTG+AGG | + | chr5.2:7229596-7229615 | MS.gene09606:CDS | 60.0% | |
| ! | GAGGGGTGTGACAGCTCAAG+AGG | + | chr5.2:7229542-7229561 | MS.gene09606:CDS | 60.0% |
| CTATGGCGGTCGAGGTTGGG+TGG | - | chr5.2:7227122-7227141 | None:intergenic | 65.0% | |
| GGCTGAGACAGCAGCAAGGG+AGG | + | chr5.2:7229617-7229636 | MS.gene09606:CDS | 65.0% | |
| TGGCGGTCGAGGTTGGGTGG+TGG | - | chr5.2:7227119-7227138 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 7226631 | 7230442 | 7226631 | ID=MS.gene09606 |
| chr5.2 | mRNA | 7226631 | 7230442 | 7226631 | ID=MS.gene09606.t1;Parent=MS.gene09606 |
| chr5.2 | exon | 7226631 | 7226780 | 7226631 | ID=MS.gene09606.t1.exon1;Parent=MS.gene09606.t1 |
| chr5.2 | CDS | 7226631 | 7226780 | 7226631 | ID=cds.MS.gene09606.t1;Parent=MS.gene09606.t1 |
| chr5.2 | exon | 7227015 | 7227223 | 7227015 | ID=MS.gene09606.t1.exon2;Parent=MS.gene09606.t1 |
| chr5.2 | CDS | 7227015 | 7227223 | 7227015 | ID=cds.MS.gene09606.t1;Parent=MS.gene09606.t1 |
| chr5.2 | exon | 7227737 | 7227821 | 7227737 | ID=MS.gene09606.t1.exon3;Parent=MS.gene09606.t1 |
| chr5.2 | CDS | 7227737 | 7227821 | 7227737 | ID=cds.MS.gene09606.t1;Parent=MS.gene09606.t1 |
| chr5.2 | exon | 7228895 | 7228978 | 7228895 | ID=MS.gene09606.t1.exon4;Parent=MS.gene09606.t1 |
| chr5.2 | CDS | 7228895 | 7228978 | 7228895 | ID=cds.MS.gene09606.t1;Parent=MS.gene09606.t1 |
| chr5.2 | exon | 7229375 | 7229727 | 7229375 | ID=MS.gene09606.t1.exon5;Parent=MS.gene09606.t1 |
| chr5.2 | CDS | 7229375 | 7229727 | 7229375 | ID=cds.MS.gene09606.t1;Parent=MS.gene09606.t1 |
| chr5.2 | exon | 7230322 | 7230442 | 7230322 | ID=MS.gene09606.t1.exon6;Parent=MS.gene09606.t1 |
| chr5.2 | CDS | 7230322 | 7230442 | 7230322 | ID=cds.MS.gene09606.t1;Parent=MS.gene09606.t1 |
| Gene Sequence |
| Protein sequence |
