Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09631.t1 | XP_003611533.1 | 82.6 | 230 | 26 | 3 | 2 | 226 | 89 | 309 | 5.40E-99 | 370.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09631.t1 | Q9M2Y9 | 91.2 | 34 | 3 | 0 | 2 | 35 | 89 | 122 | 1.6e-11 | 71.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09631.t1 | G7K165 | 82.6 | 230 | 26 | 3 | 2 | 226 | 89 | 309 | 3.9e-99 | 370.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene09631.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09631.t1 | MTR_5g014990 | 89.565 | 230 | 10 | 3 | 2 | 226 | 89 | 309 | 2.45e-139 | 392 |
MS.gene09631.t1 | MTR_4g097570 | 40.693 | 231 | 98 | 12 | 2 | 223 | 90 | 290 | 1.83e-25 | 101 |
MS.gene09631.t1 | MTR_4g097570 | 40.693 | 231 | 98 | 12 | 2 | 223 | 89 | 289 | 1.89e-25 | 101 |
MS.gene09631.t1 | MTR_1g017140 | 59.259 | 81 | 28 | 2 | 2 | 79 | 89 | 167 | 2.08e-20 | 88.2 |
MS.gene09631.t1 | MTR_3g103570 | 47.059 | 85 | 43 | 1 | 2 | 86 | 89 | 171 | 3.49e-18 | 82.0 |
MS.gene09631.t1 | MTR_4g057635 | 84.848 | 33 | 5 | 0 | 2 | 34 | 89 | 121 | 1.81e-12 | 65.9 |
MS.gene09631.t1 | MTR_3g461490 | 80.645 | 31 | 6 | 0 | 2 | 32 | 88 | 118 | 3.39e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09631.t1 | AT5G65790 | 57.647 | 85 | 21 | 4 | 2 | 78 | 89 | 166 | 1.61e-17 | 80.5 |
MS.gene09631.t1 | AT3G49690 | 29.730 | 222 | 123 | 5 | 2 | 197 | 89 | 303 | 8.23e-16 | 75.1 |
MS.gene09631.t1 | AT5G57620 | 85.714 | 35 | 5 | 0 | 2 | 36 | 89 | 123 | 1.76e-14 | 71.6 |
MS.gene09631.t1 | AT4G37780 | 72.727 | 44 | 12 | 0 | 2 | 45 | 89 | 132 | 2.47e-14 | 70.9 |
MS.gene09631.t1 | AT5G23000 | 45.455 | 66 | 36 | 0 | 2 | 67 | 89 | 154 | 2.29e-12 | 65.5 |
MS.gene09631.t1 | AT5G56110 | 83.871 | 31 | 5 | 0 | 2 | 32 | 88 | 118 | 1.32e-11 | 63.2 |
MS.gene09631.t1 | AT2G16720 | 78.125 | 32 | 7 | 0 | 2 | 33 | 88 | 119 | 7.86e-11 | 60.8 |
Find 46 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGAGGAGTCTAGGTATTT+TGG | 0.172232 | 5.2:+6881916 | MS.gene09631:CDS |
ATATGAGTTCAGCTCCTTAT+TGG | 0.208038 | 5.2:+6881485 | MS.gene09631:CDS |
GTATTACTCACAATGGAAAA+AGG | 0.210111 | 5.2:-6881613 | None:intergenic |
GTTCATATCATAATCAATTA+TGG | 0.256120 | 5.2:-6881551 | None:intergenic |
TTGGAATGCAAATGCAATAA+AGG | 0.260472 | 5.2:+6881935 | MS.gene09631:CDS |
GAATTTGATGGTGGCGGCTT+CGG | 0.274867 | 5.2:+6881453 | MS.gene09631:CDS |
AATTTGATGGTGGCGGCTTC+GGG | 0.281895 | 5.2:+6881454 | MS.gene09631:CDS |
AACCCTTGAAATATATTTGA+TGG | 0.289827 | 5.2:-6881664 | None:intergenic |
TTCTATCCATTATTTGTTGT+TGG | 0.313622 | 5.2:-6881729 | None:intergenic |
TGTGAACCAACAACAAATAA+TGG | 0.320313 | 5.2:+6881723 | MS.gene09631:CDS |
TTGGGGAGATATGAACTCTT+TGG | 0.325613 | 5.2:+6881837 | MS.gene09631:CDS |
ATTATGGATGAATTTGAAAC+TGG | 0.368691 | 5.2:-6881535 | None:intergenic |
GAATACTCTGCAGGCCAATA+AGG | 0.382763 | 5.2:-6881499 | None:intergenic |
CTTGTTTCATGTTGCTAACT+CGG | 0.393201 | 5.2:-6881408 | None:intergenic |
ATAATGGATAGAACAATTGA+TGG | 0.418211 | 5.2:+6881739 | MS.gene09631:CDS |
CAACCATCAAATATATTTCA+AGG | 0.418574 | 5.2:+6881661 | MS.gene09631:CDS |
GCTCCTTCCTTTGTTTCCCA+AGG | 0.424838 | 5.2:-6881363 | None:intergenic |
TTCAACAGAAAGCACTAGTT+GGG | 0.432311 | 5.2:+6881819 | MS.gene09631:CDS |
CTTGTGGAACTGATCCTTGT+TGG | 0.444815 | 5.2:-6881882 | None:intergenic |
CTTGAAATATATTTGATGGT+TGG | 0.466174 | 5.2:-6881660 | None:intergenic |
GGTTGAAGAAGAAGCTCCTT+GGG | 0.469664 | 5.2:+6881347 | MS.gene09631:CDS |
CTTCAACAGAAAGCACTAGT+TGG | 0.476988 | 5.2:+6881818 | MS.gene09631:CDS |
AGAAATAAATCAGAATTTGA+TGG | 0.487396 | 5.2:+6881441 | MS.gene09631:CDS |
ATAATGATATAAAGAACTAC+TGG | 0.487898 | 5.2:+6881317 | MS.gene09631:CDS |
ACAAGCTCACTTAAATCCCT+TGG | 0.501931 | 5.2:-6881697 | None:intergenic |
AAATCAGAATTTGATGGTGG+CGG | 0.512314 | 5.2:+6881447 | MS.gene09631:CDS |
AACCATCAAATATATTTCAA+GGG | 0.521432 | 5.2:+6881662 | MS.gene09631:CDS |
AGGTTGAAGAAGAAGCTCCT+TGG | 0.531276 | 5.2:+6881346 | MS.gene09631:CDS |
TCTTTGGTTTATGACTATGA+AGG | 0.535991 | 5.2:+6881853 | MS.gene09631:CDS |
ATATCATTATCCGTTCGTCC+TGG | 0.550639 | 5.2:-6881304 | None:intergenic |
GGATGAACAGAATACTCTGC+AGG | 0.563118 | 5.2:-6881508 | None:intergenic |
TGTAATTGTATTACTCACAA+TGG | 0.565477 | 5.2:-6881620 | None:intergenic |
TAAAGAACTACTGGAACACT+AGG | 0.569888 | 5.2:+6881326 | MS.gene09631:CDS |
ATCATAGCAGCACAATTACC+AGG | 0.572301 | 5.2:+6881286 | MS.gene09631:CDS |
AGAAGCTCCTTGGGAAACAA+AGG | 0.580754 | 5.2:+6881356 | MS.gene09631:CDS |
TATGAAGGTTGTTGCCAACA+AGG | 0.584761 | 5.2:+6881868 | MS.gene09631:CDS |
TCAAAAGCAATAGCATCTTG+TGG | 0.589541 | 5.2:-6881898 | None:intergenic |
AGTAATACAATTACAAACAA+TGG | 0.595870 | 5.2:+6881628 | MS.gene09631:CDS |
TCTATTGACATGAGCAATGG+TGG | 0.599559 | 5.2:+6881778 | MS.gene09631:CDS |
AGCACAATTACCAGGACGAA+CGG | 0.615114 | 5.2:+6881294 | MS.gene09631:CDS |
AATACAATTACAAACAATGG+TGG | 0.622206 | 5.2:+6881631 | MS.gene09631:CDS |
GATGAATTTGAAACTGGCAT+AGG | 0.626545 | 5.2:-6881529 | None:intergenic |
GCTCCTTGGGAAACAAAGGA+AGG | 0.636745 | 5.2:+6881360 | MS.gene09631:CDS |
AATAAATCAGAATTTGATGG+TGG | 0.642797 | 5.2:+6881444 | MS.gene09631:CDS |
GAATCTATTGACATGAGCAA+TGG | 0.644932 | 5.2:+6881775 | MS.gene09631:CDS |
TCAACAGAAAGCACTAGTTG+GGG | 0.700480 | 5.2:+6881820 | MS.gene09631:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATATTATTTTTAAAAAAT+AGG | - | chr5.2:6880264-6880283 | None:intergenic | 0.0% |
!! | ATTAAATTAATCATTATGTA+TGG | - | chr5.2:6880811-6880830 | None:intergenic | 10.0% |
!!! | CTAATTAATTAATAAGTTTT+AGG | - | chr5.2:6881120-6881139 | None:intergenic | 10.0% |
!! | TTACTTTATGACTAAATAAA+TGG | - | chr5.2:6880391-6880410 | None:intergenic | 15.0% |
!!! | AATTTATTTGTTTATTTCTG+TGG | + | chr5.2:6880878-6880897 | MS.gene09631:intron | 15.0% |
!! | AACCATCAAATATATTTCAA+GGG | + | chr5.2:6881662-6881681 | MS.gene09631:CDS | 20.0% |
!! | AGAAATAAATCAGAATTTGA+TGG | + | chr5.2:6881441-6881460 | MS.gene09631:CDS | 20.0% |
!! | AGTAATACAATTACAAACAA+TGG | + | chr5.2:6881628-6881647 | MS.gene09631:CDS | 20.0% |
!! | ATAATGATATAAAGAACTAC+TGG | + | chr5.2:6881317-6881336 | MS.gene09631:CDS | 20.0% |
!! | ATATATAAAGAAAAGAAGAG+TGG | - | chr5.2:6880494-6880513 | None:intergenic | 20.0% |
!! | GACTAAATAAATGGATAAAT+TGG | - | chr5.2:6880382-6880401 | None:intergenic | 20.0% |
!! | GTTCATATCATAATCAATTA+TGG | - | chr5.2:6881554-6881573 | None:intergenic | 20.0% |
!! | TATATAAAGAAAAGAAGAGT+GGG | - | chr5.2:6880493-6880512 | None:intergenic | 20.0% |
!! | TTATCATCAACTCATAATAA+AGG | + | chr5.2:6880543-6880562 | MS.gene09631:intron | 20.0% |
!! | TTCTTTGAATATGTATATGT+AGG | + | chr5.2:6881257-6881276 | MS.gene09631:intron | 20.0% |
! | AACCCTTGAAATATATTTGA+TGG | - | chr5.2:6881667-6881686 | None:intergenic | 25.0% |
! | AAGTCTTACATAGAACAAAA+TGG | + | chr5.2:6880673-6880692 | MS.gene09631:intron | 25.0% |
! | AATAAATCAGAATTTGATGG+TGG | + | chr5.2:6881444-6881463 | MS.gene09631:CDS | 25.0% |
! | AATACAATTACAAACAATGG+TGG | + | chr5.2:6881631-6881650 | MS.gene09631:CDS | 25.0% |
! | AATTAGAGTCTACAAAGTTA+TGG | - | chr5.2:6881224-6881243 | None:intergenic | 25.0% |
! | AGAGATATGAATTATTGTTG+TGG | - | chr5.2:6880241-6880260 | None:intergenic | 25.0% |
! | ATATGAATTATTGTTGTGGA+TGG | - | chr5.2:6880237-6880256 | None:intergenic | 25.0% |
! | CAACCATCAAATATATTTCA+AGG | + | chr5.2:6881661-6881680 | MS.gene09631:CDS | 25.0% |
! | CTTAGACCAAATATTAAACA+TGG | + | chr5.2:6880963-6880982 | MS.gene09631:intron | 25.0% |
! | TATGAATTATTGTTGTGGAT+GGG | - | chr5.2:6880236-6880255 | None:intergenic | 25.0% |
! | TATTACTCACAATGGAAAAA+GGG | - | chr5.2:6881615-6881634 | None:intergenic | 25.0% |
! | TGTAATTGTATTACTCACAA+TGG | - | chr5.2:6881623-6881642 | None:intergenic | 25.0% |
! | TTTGAATATGTATATGTAGG+TGG | + | chr5.2:6881260-6881279 | MS.gene09631:intron | 25.0% |
!! | ATTATGGATGAATTTGAAAC+TGG | - | chr5.2:6881538-6881557 | None:intergenic | 25.0% |
!! | CTTGAAATATATTTGATGGT+TGG | - | chr5.2:6881663-6881682 | None:intergenic | 25.0% |
!!! | AATTGATGGTTTTTATGGAA+TGG | + | chr5.2:6881753-6881772 | MS.gene09631:CDS | 25.0% |
!!! | AGAACAATTGATGGTTTTTA+TGG | + | chr5.2:6881748-6881767 | MS.gene09631:CDS | 25.0% |
!!! | ATAATGGATAGAACAATTGA+TGG | + | chr5.2:6881739-6881758 | MS.gene09631:CDS | 25.0% |
!!! | GAGAAATTTGGTTTTGAAAA+AGG | - | chr5.2:6880435-6880454 | None:intergenic | 25.0% |
!!! | TTCTATCCATTATTTGTTGT+TGG | - | chr5.2:6881732-6881751 | None:intergenic | 25.0% |
AAAACTCATACCAACAAACA+TGG | + | chr5.2:6880579-6880598 | MS.gene09631:intron | 30.0% | |
AAACTCATACCAACAAACAT+GGG | + | chr5.2:6880580-6880599 | MS.gene09631:intron | 30.0% | |
AAGCCACCATGTTTAATATT+TGG | - | chr5.2:6880972-6880991 | None:intergenic | 30.0% | |
AATAATGTCGTCTTCTTCTT+CGG | - | chr5.2:6880997-6881016 | None:intergenic | 30.0% | |
AGACCAAATATTAAACATGG+TGG | + | chr5.2:6880966-6880985 | MS.gene09631:intron | 30.0% | |
ATGAATTATTGTTGTGGATG+GGG | - | chr5.2:6880235-6880254 | None:intergenic | 30.0% | |
ATTGAGATTCTAGACTAAGA+AGG | + | chr5.2:6880317-6880336 | MS.gene09631:intron | 30.0% | |
CATCAACTCATAATAAAGGT+TGG | + | chr5.2:6880547-6880566 | MS.gene09631:intron | 30.0% | |
GGACACAATTAGAAAAACAT+TGG | + | chr5.2:6880338-6880357 | MS.gene09631:intron | 30.0% | |
GTATTACTCACAATGGAAAA+AGG | - | chr5.2:6881616-6881635 | None:intergenic | 30.0% | |
TACATAGAACAAAATGGTAC+TGG | + | chr5.2:6880679-6880698 | MS.gene09631:intron | 30.0% | |
TGTGAACCAACAACAAATAA+TGG | + | chr5.2:6881723-6881742 | MS.gene09631:CDS | 30.0% | |
TTATTTCCAAGTAGATAGCT+CGG | - | chr5.2:6881178-6881197 | None:intergenic | 30.0% | |
! | AAGGGTTTGAAAATTTTCCA+AGG | + | chr5.2:6881680-6881699 | MS.gene09631:CDS | 30.0% |
! | AGGGTTTGAAAATTTTCCAA+GGG | + | chr5.2:6881681-6881700 | MS.gene09631:CDS | 30.0% |
! | TCTTTGGTTTATGACTATGA+AGG | + | chr5.2:6881853-6881872 | MS.gene09631:CDS | 30.0% |
!!! | TTGGTTTTGAAAAAGGTGTA+TGG | - | chr5.2:6880428-6880447 | None:intergenic | 30.0% |
AAATTTCTCTCTCTTTCTCC+AGG | + | chr5.2:6880446-6880465 | MS.gene09631:intron | 35.0% | |
AGATGATGAACCTTTATGCA+TGG | - | chr5.2:6880207-6880226 | None:intergenic | 35.0% | |
ATAAAGAAAAGAAGAGTGGG+AGG | - | chr5.2:6880490-6880509 | None:intergenic | 35.0% | |
ATATGAGTTCAGCTCCTTAT+TGG | + | chr5.2:6881485-6881504 | MS.gene09631:CDS | 35.0% | |
ATTGCTCTACCTCAAAAGAT+AGG | + | chr5.2:6880712-6880731 | MS.gene09631:intron | 35.0% | |
ATTGGAAATGCCAGTGTAAT+AGG | - | chr5.2:6880364-6880383 | None:intergenic | 35.0% | |
CAAAAGATAGGTATGCTACA+TGG | + | chr5.2:6880724-6880743 | MS.gene09631:intron | 35.0% | |
CTTGTTTCATGTTGCTAACT+CGG | - | chr5.2:6881411-6881430 | None:intergenic | 35.0% | |
GAATCTATTGACATGAGCAA+TGG | + | chr5.2:6881775-6881794 | MS.gene09631:CDS | 35.0% | |
GACAAAGCCAATGTCAAAAA+AGG | + | chr5.2:6880619-6880638 | MS.gene09631:intron | 35.0% | |
TAAAGAACTACTGGAACACT+AGG | + | chr5.2:6881326-6881345 | MS.gene09631:CDS | 35.0% | |
TCAAAAGCAATAGCATCTTG+TGG | - | chr5.2:6881901-6881920 | None:intergenic | 35.0% | |
TGGAGAAAGAGAGAGAAATT+TGG | - | chr5.2:6880447-6880466 | None:intergenic | 35.0% | |
TTTAACCTTCCACTACCATT+TGG | + | chr5.2:6880165-6880184 | MS.gene09631:intron | 35.0% | |
! | AAAACATTGGCCTATTACAC+TGG | + | chr5.2:6880351-6880370 | MS.gene09631:intron | 35.0% |
! | ATAGAACAAAATGGTACTGG+TGG | + | chr5.2:6880682-6880701 | MS.gene09631:intron | 35.0% |
! | GATGAATTTGAAACTGGCAT+AGG | - | chr5.2:6881532-6881551 | None:intergenic | 35.0% |
! | TGTAGCATACCTATCTTTTG+AGG | - | chr5.2:6880724-6880743 | None:intergenic | 35.0% |
! | TTGAGTTTTGCATCTTCTTC+AGG | - | chr5.2:6880655-6880674 | None:intergenic | 35.0% |
! | TTTGAGGAGTCTAGGTATTT+TGG | + | chr5.2:6881916-6881935 | MS.gene09631:CDS | 35.0% |
!! | AAAATGGTACTGGTGGAAAT+TGG | + | chr5.2:6880689-6880708 | MS.gene09631:intron | 35.0% |
!! | AAATCAGAATTTGATGGTGG+CGG | + | chr5.2:6881447-6881466 | MS.gene09631:CDS | 35.0% |
!! | ACAAGATGCTATTGCTTTTG+AGG | + | chr5.2:6881900-6881919 | MS.gene09631:CDS | 35.0% |
!! | TTCAACAGAAAGCACTAGTT+GGG | + | chr5.2:6881819-6881838 | MS.gene09631:CDS | 35.0% |
ACAAGCTCACTTAAATCCCT+TGG | - | chr5.2:6881700-6881719 | None:intergenic | 40.0% | |
ATATCATTATCCGTTCGTCC+TGG | - | chr5.2:6881307-6881326 | None:intergenic | 40.0% | |
ATCATAGCAGCACAATTACC+AGG | + | chr5.2:6881286-6881305 | MS.gene09631:CDS | 40.0% | |
ATCCAGGACTTAAGAGATGT+GGG | + | chr5.2:6880910-6880929 | MS.gene09631:intron | 40.0% | |
CCAATGTCAAAAAAGGTCCA+TGG | + | chr5.2:6880626-6880645 | MS.gene09631:intron | 40.0% | |
CTCACAATGGAAAAAGGGTT+TGG | - | chr5.2:6881610-6881629 | None:intergenic | 40.0% | |
TATAAGAGAGAGAGAGAGAG+AGG | + | chr5.2:6880279-6880298 | MS.gene09631:intron | 40.0% | |
TATGAAGGTTGTTGCCAACA+AGG | + | chr5.2:6881868-6881887 | MS.gene09631:CDS | 40.0% | |
TCTATTGACATGAGCAATGG+TGG | + | chr5.2:6881778-6881797 | MS.gene09631:CDS | 40.0% | |
TGAACCTTTATGCATGGTGA+AGG | - | chr5.2:6880201-6880220 | None:intergenic | 40.0% | |
TTATTGTTGTGGATGGGGAA+TGG | - | chr5.2:6880230-6880249 | None:intergenic | 40.0% | |
TTGGGGAGATATGAACTCTT+TGG | + | chr5.2:6881837-6881856 | MS.gene09631:CDS | 40.0% | |
!! | CTATTGCTTTTGAGGAGTCT+AGG | + | chr5.2:6881908-6881927 | MS.gene09631:CDS | 40.0% |
!! | CTTCAACAGAAAGCACTAGT+TGG | + | chr5.2:6881818-6881837 | MS.gene09631:CDS | 40.0% |
!! | TCAACAGAAAGCACTAGTTG+GGG | + | chr5.2:6881820-6881839 | MS.gene09631:CDS | 40.0% |
!!! | CCATGGACCTTTTTTGACAT+TGG | - | chr5.2:6880629-6880648 | None:intergenic | 40.0% |
AAGAAAAGAAGAGTGGGAGG+AGG | - | chr5.2:6880487-6880506 | None:intergenic | 45.0% | |
AGAAAAGAAGAGTGGGAGGA+GGG | - | chr5.2:6880486-6880505 | None:intergenic | 45.0% | |
AGAAGCTCCTTGGGAAACAA+AGG | + | chr5.2:6881356-6881375 | MS.gene09631:CDS | 45.0% | |
AGCACAATTACCAGGACGAA+CGG | + | chr5.2:6881294-6881313 | MS.gene09631:CDS | 45.0% | |
AGGTTGAAGAAGAAGCTCCT+TGG | + | chr5.2:6881346-6881365 | MS.gene09631:CDS | 45.0% | |
CTTGTGGAACTGATCCTTGT+TGG | - | chr5.2:6881885-6881904 | None:intergenic | 45.0% | |
GAATACTCTGCAGGCCAATA+AGG | - | chr5.2:6881502-6881521 | None:intergenic | 45.0% | |
GATCCAGGACTTAAGAGATG+TGG | + | chr5.2:6880909-6880928 | MS.gene09631:intron | 45.0% | |
GCTACCTTCACCATGCATAA+AGG | + | chr5.2:6880194-6880213 | MS.gene09631:intron | 45.0% | |
GGAAAAGCTGTCGTCTTAGA+TGG | + | chr5.2:6880931-6880950 | MS.gene09631:intron | 45.0% | |
GGATGAACAGAATACTCTGC+AGG | - | chr5.2:6881511-6881530 | None:intergenic | 45.0% | |
GGTTGAAGAAGAAGCTCCTT+GGG | + | chr5.2:6881347-6881366 | MS.gene09631:CDS | 45.0% | |
TACCAACCGAGCTATCTACT+TGG | + | chr5.2:6881169-6881188 | MS.gene09631:intron | 45.0% | |
TGCAGCCTCTATGTTAGCAT+CGG | + | chr5.2:6881017-6881036 | MS.gene09631:intron | 45.0% | |
TGCTTCCGATGCTAACATAG+AGG | - | chr5.2:6881025-6881044 | None:intergenic | 45.0% | |
TTCCAAGTAGATAGCTCGGT+TGG | - | chr5.2:6881174-6881193 | None:intergenic | 45.0% | |
TTCCCACATCTCTTAAGTCC+TGG | - | chr5.2:6880915-6880934 | None:intergenic | 45.0% | |
! | TCTATGTTAGCATCGGAAGC+AGG | + | chr5.2:6881024-6881043 | MS.gene09631:intron | 45.0% |
!! | ACATTGGCTTTGTCACAGCA+AGG | - | chr5.2:6880613-6880632 | None:intergenic | 45.0% |
!!! | TAATTAATTAATAAGTTTTA+GGG | - | chr5.2:6881119-6881138 | None:intergenic | 5.0% |
AGGGGCAGAGAGAAATAACC+TGG | - | chr5.2:6880467-6880486 | None:intergenic | 50.0% | |
ATGCATGGTGAAGGTAGCGT+GGG | - | chr5.2:6880192-6880211 | None:intergenic | 50.0% | |
GAAAAGAAGAGTGGGAGGAG+GGG | - | chr5.2:6880485-6880504 | None:intergenic | 50.0% | |
GCATCTTCTTCAGGTGACCA+TGG | - | chr5.2:6880646-6880665 | None:intergenic | 50.0% | |
GCTCCTTGGGAAACAAAGGA+AGG | + | chr5.2:6881360-6881379 | MS.gene09631:CDS | 50.0% | |
GGAGCTCTTCCCATGTTTGT+TGG | - | chr5.2:6880592-6880611 | None:intergenic | 50.0% | |
TATGCATGGTGAAGGTAGCG+TGG | - | chr5.2:6880193-6880212 | None:intergenic | 50.0% | |
TCTGTGGATGTGTGTGATCC+AGG | + | chr5.2:6880894-6880913 | MS.gene09631:intron | 50.0% | |
! | GCTCCTTCCTTTGTTTCCCA+AGG | - | chr5.2:6881366-6881385 | None:intergenic | 50.0% |
!! | AATTTGATGGTGGCGGCTTC+GGG | + | chr5.2:6881454-6881473 | MS.gene09631:CDS | 50.0% |
!! | GAATTTGATGGTGGCGGCTT+CGG | + | chr5.2:6881453-6881472 | MS.gene09631:CDS | 50.0% |
!! | TGGGACCAAATGGTAGTGGA+AGG | - | chr5.2:6880173-6880192 | None:intergenic | 50.0% |
AGCGTGGGACCAAATGGTAG+TGG | - | chr5.2:6880177-6880196 | None:intergenic | 55.0% | |
GAAGGTAGCGTGGGACCAAA+TGG | - | chr5.2:6880183-6880202 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 6880150 | 6881954 | 6880150 | ID=MS.gene09631 |
chr5.2 | mRNA | 6880150 | 6881954 | 6880150 | ID=MS.gene09631.t1;Parent=MS.gene09631 |
chr5.2 | exon | 6880150 | 6880154 | 6880150 | ID=MS.gene09631.t1.exon1;Parent=MS.gene09631.t1 |
chr5.2 | CDS | 6880150 | 6880154 | 6880150 | ID=cds.MS.gene09631.t1;Parent=MS.gene09631.t1 |
chr5.2 | exon | 6881279 | 6881954 | 6881279 | ID=MS.gene09631.t1.exon2;Parent=MS.gene09631.t1 |
chr5.2 | CDS | 6881279 | 6881954 | 6881279 | ID=cds.MS.gene09631.t1;Parent=MS.gene09631.t1 |
Gene Sequence |
Protein sequence |