AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09633

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09633.t1 MTR_5g014890 96.691 272 7 2 1 272 1 270 0.0 529
MS.gene09633.t1 MTR_4g097600 64.360 289 68 9 1 272 1 271 3.92e-98 288
MS.gene09633.t1 MTR_2g061030 73.333 135 34 1 106 238 179 313 2.17e-64 205
MS.gene09633.t1 MTR_1g054285 72.388 134 36 1 105 238 135 267 2.53e-63 201
MS.gene09633.t1 MTR_1g017090 57.360 197 75 5 73 267 83 272 3.96e-63 200
MS.gene09633.t1 MTR_7g093430 67.376 141 46 0 98 238 133 273 9.36e-63 199
MS.gene09633.t1 MTR_5g013010 59.067 193 67 4 47 238 69 250 1.49e-62 199
MS.gene09633.t1 MTR_4g100550 63.253 166 49 4 74 238 80 234 4.63e-62 197
MS.gene09633.t1 MTR_8g006705 79.825 114 22 1 124 236 145 258 1.28e-59 191
MS.gene09633.t1 MTR_3g103590 57.459 181 66 5 93 267 117 292 4.62e-51 169
MS.gene09633.t1 MTR_4g084750 58.955 134 49 1 124 251 64 197 8.29e-48 158
MS.gene09633.t1 MTR_2g038625 52.667 150 66 2 91 239 52 197 4.34e-40 138
MS.gene09633.t1 MTR_2g038580 52.667 150 66 2 91 239 52 197 4.34e-40 138
MS.gene09633.t1 MTR_4g126900 64.655 116 33 3 127 236 90 203 1.27e-37 132
MS.gene09633.t1 MTR_5g013010 53.846 130 49 3 47 176 69 187 8.77e-28 106
MS.gene09633.t1 MTR_5g039000 38.621 145 88 1 73 216 24 168 3.81e-19 85.1
MS.gene09633.t1 MTR_8g468210 42.609 115 64 1 102 216 56 168 1.01e-18 84.0
MS.gene09633.t1 MTR_7g010020 41.593 113 61 1 99 211 59 166 1.02e-18 83.6
MS.gene09633.t1 MTR_6g011610 45.794 107 51 1 112 211 83 189 2.20e-18 82.8
MS.gene09633.t1 MTR_6g007647 50.000 88 44 0 125 212 33 120 2.70e-18 82.4
MS.gene09633.t1 MTR_6g007647 48.913 92 47 0 125 216 67 158 3.69e-18 82.4
MS.gene09633.t1 MTR_5g038280 40.972 144 71 4 78 212 43 181 3.86e-18 82.8
MS.gene09633.t1 MTR_6g011610 45.794 107 51 1 112 211 64 170 4.74e-18 81.6
MS.gene09633.t1 MTR_7g103340 40.367 109 64 1 104 211 41 149 1.06e-16 77.4
MS.gene09633.t1 MTR_8g469430 46.809 94 43 1 125 211 89 182 2.68e-16 77.4
MS.gene09633.t1 MTR_1g061660 43.478 92 52 0 122 213 56 147 2.95e-16 76.3
MS.gene09633.t1 MTR_3g080100 47.368 95 43 1 125 212 20 114 3.89e-16 75.5
MS.gene09633.t1 MTR_3g080100 43.697 119 57 3 104 212 35 153 4.31e-16 76.3
MS.gene09633.t1 MTR_4g107650 45.833 96 52 0 117 212 87 182 6.59e-16 76.6
MS.gene09633.t1 MTR_3g086790 42.718 103 52 1 117 212 52 154 1.78e-15 75.1
MS.gene09633.t1 MTR_8g089895 46.392 97 45 1 123 212 52 148 2.19e-15 75.1
MS.gene09633.t1 MTR_8g026960 35.878 131 72 3 129 252 38 163 1.22e-12 66.2
MS.gene09633.t1 MTR_3g092150 43.617 94 52 1 128 221 41 133 6.70e-12 64.3
MS.gene09633.t1 MTR_5g019680 44.000 100 51 1 120 219 48 142 2.94e-11 62.0
MS.gene09633.t1 MTR_5g019650 44.086 93 52 0 120 212 48 140 4.67e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09633.t1 AT4G37790 60.690 290 84 9 1 272 1 278 5.00e-93 276
MS.gene09633.t1 AT2G22800 57.785 289 90 8 1 272 1 274 7.57e-85 255
MS.gene09633.t1 AT5G06710 68.243 148 42 2 96 241 162 306 3.79e-65 207
MS.gene09633.t1 AT3G60390 60.795 176 56 5 74 236 99 274 3.47e-59 191
MS.gene09633.t1 AT4G16780 66.667 138 45 1 101 237 105 242 1.04e-58 189
MS.gene09633.t1 AT2G44910 54.545 198 76 4 49 237 84 276 3.33e-57 186
MS.gene09633.t1 AT5G47370 50.711 211 76 7 74 272 72 266 1.37e-55 181
MS.gene09633.t1 AT4G17460 55.747 174 67 5 74 238 77 249 2.98e-51 169
MS.gene09633.t1 AT2G01430 55.556 126 54 1 116 241 130 253 8.45e-41 142
MS.gene09633.t1 AT1G70920 51.852 135 54 2 117 247 27 154 2.35e-36 127
MS.gene09633.t1 AT1G70920 53.846 130 49 2 117 242 57 179 2.89e-36 128
MS.gene09633.t1 AT5G06710 69.880 83 20 2 96 176 162 241 6.61e-29 111
MS.gene09633.t1 AT2G01430 57.692 78 31 1 116 193 130 205 1.41e-21 90.5
MS.gene09633.t1 AT1G26960 41.593 113 66 0 117 229 63 175 1.85e-18 82.8
MS.gene09633.t1 AT1G69780 45.833 96 52 0 117 212 77 172 6.43e-18 82.0
MS.gene09633.t1 AT5G15150 42.149 121 62 2 98 214 92 208 6.65e-18 82.0
MS.gene09633.t1 AT3G01220 44.340 106 55 1 113 214 75 180 5.63e-17 79.3
MS.gene09633.t1 AT3G01470 47.312 93 42 1 125 210 68 160 8.47e-17 78.6
MS.gene09633.t1 AT5G65310 43.000 100 50 1 120 212 67 166 2.66e-15 74.7
MS.gene09633.t1 AT5G65310 43.000 100 50 1 120 212 49 148 3.00e-15 74.3
MS.gene09633.t1 AT4G40060 43.299 97 51 1 123 215 57 153 4.10e-15 73.9
MS.gene09633.t1 AT2G22430 44.792 96 49 1 123 214 60 155 2.29e-14 72.0
MS.gene09633.t1 AT5G03790 32.653 147 96 2 125 268 77 223 4.62e-14 70.1
MS.gene09633.t1 AT1G27045 46.875 96 44 1 125 213 68 163 5.20e-14 70.5
MS.gene09633.t1 AT1G27045 50.000 88 44 0 125 212 68 155 5.66e-14 69.7
MS.gene09633.t1 AT2G46680 42.424 99 53 1 122 216 29 127 7.30e-14 70.1
MS.gene09633.t1 AT2G46680 40.625 96 57 0 122 217 29 124 7.94e-14 70.1
MS.gene09633.t1 AT1G27045 57.576 66 28 0 125 190 25 90 1.00e-13 68.2
MS.gene09633.t1 AT1G27045 57.576 66 28 0 125 190 25 90 1.00e-13 68.2
MS.gene09633.t1 AT1G27045 57.576 66 28 0 125 190 17 82 1.17e-13 67.8
MS.gene09633.t1 AT2G18550 44.000 100 55 1 113 211 48 147 3.63e-13 67.4
MS.gene09633.t1 AT2G36610 42.857 98 48 2 124 213 70 167 5.03e-13 66.2
MS.gene09633.t1 AT4G36740 43.678 87 49 0 125 211 56 142 1.22e-11 63.2
MS.gene09633.t1 AT5G03790 37.931 116 64 2 125 232 77 192 1.33e-11 62.8
MS.gene09633.t1 AT4G36740 43.678 87 49 0 125 211 55 141 1.38e-11 63.2
MS.gene09633.t1 AT3G61890 42.353 85 49 0 128 212 33 117 2.51e-11 62.4

Find 68 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTACCTGGCCCTCCGATTC+TGG 0.168875 5.2:+6832703 None:intergenic
GATTCTCTTCACCTTGTTCT+AGG 0.242496 5.2:-6833306 MS.gene09633:CDS
AAACATTAACAGACGAAAAT+AGG 0.283618 5.2:-6831886 MS.gene09633:CDS
GGATTGTAGAAATGAGTATT+TGG 0.305343 5.2:+6831698 None:intergenic
AAGCAATAGTGATTGTTCTT+TGG 0.306534 5.2:+6832939 None:intergenic
TGGCTCGTTGGAGGTGGAAT+AGG 0.345900 5.2:+6833221 None:intergenic
CGAAAATAGGAGGCTCAAAA+AGG 0.353329 5.2:-6831873 MS.gene09633:CDS
TAGCGAGACAGTTGAATCTA+AGG 0.358273 5.2:-6832749 MS.gene09633:CDS
GTGGTGGTAGTTATTTCCTT+TGG 0.358754 5.2:+6833258 None:intergenic
ATAGGGATTCATGGTGGTGG+TGG 0.418056 5.2:+6833239 None:intergenic
AAGTTCCTCACCATAACCTT+TGG 0.418493 5.2:+6833140 None:intergenic
GGGATTCATGGTGGTGGTGG+TGG 0.429866 5.2:+6833242 None:intergenic
AAACAAGCTCCCAAAGGTTA+TGG 0.433046 5.2:-6833150 MS.gene09633:CDS
GGCTCGTTGGAGGTGGAATA+GGG 0.435231 5.2:+6833222 None:intergenic
GGCCACGACAAGTTGAAGTA+TGG 0.447393 5.2:-6832728 MS.gene09633:CDS
GTTAATTCATCTTTCTCAAG+TGG 0.450640 5.2:-6833087 MS.gene09633:CDS
TCCTTAACGTTAGGACTCTC+TGG 0.452116 5.2:-6833198 MS.gene09633:CDS
ACCAGAGAGTCCTAACGTTA+AGG 0.454957 5.2:+6833197 None:intergenic
TTGAAGTATGGTTCCAGAAT+CGG 0.455526 5.2:-6832716 MS.gene09633:CDS
CGCAAGAAGGGCAGATGGAG+AGG 0.458550 5.2:+6831786 None:intergenic
CGCGTCGCCGACGGTGGTGG+TGG 0.459139 5.2:-6831752 MS.gene09633:CDS
AAGAAGTAGAAGAAGAAGAG+AGG 0.461262 5.2:-6833026 MS.gene09633:CDS
AGTTCCTCACCATAACCTTT+GGG 0.463230 5.2:+6833141 None:intergenic
CAGATGGAGAGGGTGGCTGC+AGG 0.465048 5.2:+6831797 None:intergenic
GGTTCCAGAATCGGAGGGCC+AGG 0.470005 5.2:-6832707 MS.gene09633:intron
GGCCGCGTCGCCGACGGTGG+TGG 0.477523 5.2:-6831755 MS.gene09633:CDS
TAAGGATGGCTCGTTGGAGG+TGG 0.501094 5.2:+6833215 None:intergenic
CAAATGCTAGAAAGAAACTT+AGG 0.503490 5.2:-6832966 MS.gene09633:CDS
GAGAGGGTGGCTGCAGGCAT+AGG 0.510721 5.2:+6831803 None:intergenic
GGAGGTGGAATAGGGATTCA+TGG 0.513429 5.2:+6833230 None:intergenic
CGTTAAGGATGGCTCGTTGG+AGG 0.516004 5.2:+6833212 None:intergenic
CGGCCGAGTCTTTCGCAAGA+AGG 0.519322 5.2:+6831773 None:intergenic
AGAAGTAGAAGAAGAAGAGA+GGG 0.519508 5.2:-6833025 MS.gene09633:CDS
CACCACCACCGTCGGCGACG+CGG 0.531823 5.2:+6831753 None:intergenic
AACGAGCCATCCTTAACGTT+AGG 0.533980 5.2:-6833207 MS.gene09633:CDS
GGCCGAGTCTTTCGCAAGAA+GGG 0.542654 5.2:+6831774 None:intergenic
TTTGTTTAACATGCTGCAGA+AGG 0.543158 5.2:+6831665 None:intergenic
GAGAGTGCTGCAAGTGAAGA+GGG 0.544213 5.2:-6833064 MS.gene09633:CDS
TTAATTCATCTTTCTCAAGT+GGG 0.546761 5.2:-6833086 MS.gene09633:CDS
AGACTCGGCCGCGTCGCCGA+CGG 0.550522 5.2:-6831761 MS.gene09633:CDS
GATGAATTAACAACACTATG+AGG 0.550657 5.2:+6833099 None:intergenic
CTCGGCCGCGTCGCCGACGG+TGG 0.550736 5.2:-6831758 MS.gene09633:CDS
GAATACTTCTACTACTCCAA+AGG 0.557339 5.2:-6833274 MS.gene09633:CDS
GGAGAGTGCTGCAAGTGAAG+AGG 0.575107 5.2:-6833065 MS.gene09633:CDS
GAGCTTGTTTGTGATTTGTA+CGG 0.578033 5.2:+6833163 None:intergenic
GGAATAGGGATTCATGGTGG+TGG 0.578972 5.2:+6833236 None:intergenic
GAAATGAGTATTTGGAGCCA+TGG 0.579663 5.2:+6831706 None:intergenic
ATTAGAACCACCACCACCGT+CGG 0.589643 5.2:+6831745 None:intergenic
TCTTTCGCAAGAAGGGCAGA+TGG 0.591761 5.2:+6831781 None:intergenic
GCTGCAGAAGGATTGTTGAA+AGG 0.593411 5.2:+6831677 None:intergenic
GCAAGAAGGGCAGATGGAGA+GGG 0.596727 5.2:+6831787 None:intergenic
TGCCCTTCTTGCGAAAGACT+CGG 0.599355 5.2:-6831776 MS.gene09633:CDS
AGTATTTGGAGCCATGGTGA+AGG 0.599655 5.2:+6831712 None:intergenic
AACCATACTTCAACTTGTCG+TGG 0.610138 5.2:+6832726 None:intergenic
GAGAGTCCTAACGTTAAGGA+TGG 0.616116 5.2:+6833201 None:intergenic
TAACGTTAAGGATGGCTCGT+TGG 0.618624 5.2:+6833209 None:intergenic
AGAAGGGCAGATGGAGAGGG+TGG 0.620648 5.2:+6831790 None:intergenic
AAGTATGGTTCCAGAATCGG+AGG 0.622042 5.2:-6832713 MS.gene09633:CDS
CATTAACAGACGAAAATAGG+AGG 0.634319 5.2:-6831883 MS.gene09633:CDS
TAAAATCACTGCCTTCACCA+TGG 0.649046 5.2:-6831723 MS.gene09633:CDS
AAAGCTGAAACAAACAGAGG+TGG 0.651647 5.2:-6831936 MS.gene09633:CDS
AGCTCCCAAAGGTTATGGTG+AGG 0.658770 5.2:-6833145 MS.gene09633:CDS
AATCACAAACAAGCTCCCAA+AGG 0.673939 5.2:-6833156 MS.gene09633:CDS
GGTGGAATAGGGATTCATGG+TGG 0.677474 5.2:+6833233 None:intergenic
TCAAAGATAAACCTAGAACA+AGG 0.685669 5.2:+6833295 None:intergenic
GCAGGCATAGGCATGTACAA+AGG 0.695698 5.2:+6831815 None:intergenic
AACAAAGCTGAAACAAACAG+AGG 0.748355 5.2:-6831939 MS.gene09633:CDS
AGTATGGTTCCAGAATCGGA+GGG 0.749971 5.2:-6832712 MS.gene09633:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATTAATATTCTGT+TGG - chr5.2:6832196-6832215 MS.gene09633:intron 10.0%
!! CTAATAAAAAATAGTTAATT+TGG + chr5.2:6832845-6832864 None:intergenic 10.0%
!! CTTAAAAAATCTTATATTTA+AGG - chr5.2:6832527-6832546 MS.gene09633:intron 10.0%
!!! ATTTATTTTCTTATCTTATA+AGG - chr5.2:6832701-6832720 MS.gene09633:intron 10.0%
!!! TTTATTTTCTTATCTTATAA+GGG - chr5.2:6832702-6832721 MS.gene09633:intron 10.0%
!! AAAATTGCTCTTATAATTAT+TGG + chr5.2:6832782-6832801 None:intergenic 15.0%
!!! AAAAAGTCTTATATTAAAGT+AGG - chr5.2:6832896-6832915 MS.gene09633:intron 15.0%
!!! AAAAGTCTTATATTAAAGTA+GGG - chr5.2:6832897-6832916 MS.gene09633:intron 15.0%
!!! TGAGTTTTGTAAAAAAAAAA+AGG + chr5.2:6832609-6832628 None:intergenic 15.0%
!! CCTATATGTAAAATAAATAG+AGG + chr5.2:6832674-6832693 None:intergenic 20.0%
!!! AATATAAGACTTTTTTTGAG+AGG + chr5.2:6832891-6832910 None:intergenic 20.0%
!!! CCTCTATTTATTTTACATAT+AGG - chr5.2:6832671-6832690 MS.gene09633:intron 20.0%
!!! GATATTTTATGAATATCATG+TGG - chr5.2:6832483-6832502 MS.gene09633:intron 20.0%
!!! TAATTTTCATGACTCTATAA+TGG + chr5.2:6832357-6832376 None:intergenic 20.0%
! AAACATTAACAGACGAAAAT+AGG - chr5.2:6833111-6833130 MS.gene09633:CDS 25.0%
! GAAAGAGAGAGAAAAAAATT+AGG - chr5.2:6832732-6832751 MS.gene09633:CDS 25.0%
! GAGATGAGAAAAATAATTAC+AGG + chr5.2:6832117-6832136 None:intergenic 25.0%
! TTAATTCATCTTTCTCAAGT+GGG - chr5.2:6831911-6831930 MS.gene09633:CDS 25.0%
AAGCAATAGTGATTGTTCTT+TGG + chr5.2:6832061-6832080 None:intergenic 30.0%
AATAAATGTTGGTGCATGTT+TGG - chr5.2:6832995-6833014 MS.gene09633:CDS 30.0%
CAAATGCTAGAAAGAAACTT+AGG - chr5.2:6832031-6832050 MS.gene09633:intron 30.0%
CAGACTAAGCTAATAAATGT+TGG - chr5.2:6832984-6833003 MS.gene09633:CDS 30.0%
GATGAATTAACAACACTATG+AGG + chr5.2:6831901-6831920 None:intergenic 30.0%
GGATTGTAGAAATGAGTATT+TGG + chr5.2:6833302-6833321 None:intergenic 30.0%
GTCTTATATTAAAGTAGGGA+GGG - chr5.2:6832901-6832920 MS.gene09633:intron 30.0%
GTTAATTCATCTTTCTCAAG+TGG - chr5.2:6831910-6831929 MS.gene09633:CDS 30.0%
TCAAAGATAAACCTAGAACA+AGG + chr5.2:6831705-6831724 None:intergenic 30.0%
! AGTCTTATATTAAAGTAGGG+AGG - chr5.2:6832900-6832919 MS.gene09633:intron 30.0%
AACAAAGCTGAAACAAACAG+AGG - chr5.2:6833058-6833077 MS.gene09633:CDS 35.0%
AACCACAAATCCAAAAGCAA+AGG + chr5.2:6832947-6832966 None:intergenic 35.0%
AAGAAGTAGAAGAAGAAGAG+AGG - chr5.2:6831971-6831990 MS.gene09633:intron 35.0%
ACAAATCCAAAAGCAAAGGA+AGG + chr5.2:6832943-6832962 None:intergenic 35.0%
AGAAGTAGAAGAAGAAGAGA+GGG - chr5.2:6831972-6831991 MS.gene09633:intron 35.0%
CATTAACAGACGAAAATAGG+AGG - chr5.2:6833114-6833133 MS.gene09633:CDS 35.0%
CTGTCTAGCTACTAAATTTG+TGG + chr5.2:6832432-6832451 None:intergenic 35.0%
GAATACTTCTACTACTCCAA+AGG - chr5.2:6831723-6831742 MS.gene09633:CDS 35.0%
GGATTTGTGGTTGTTAAGTA+TGG - chr5.2:6832955-6832974 MS.gene09633:CDS 35.0%
TTGAAGTATGGTTCCAGAAT+CGG - chr5.2:6832281-6832300 MS.gene09633:intron 35.0%
! AAAAAGCCTTCCTTTGCTTT+TGG - chr5.2:6832934-6832953 MS.gene09633:CDS 35.0%
! GACTCTATAATGGTGATGTA+CGG + chr5.2:6832347-6832366 None:intergenic 35.0%
! GAGCTTGTTTGTGATTTGTA+CGG + chr5.2:6831837-6831856 None:intergenic 35.0%
!! TTCCTTTGCTTTTGGATTTG+TGG - chr5.2:6832942-6832961 MS.gene09633:CDS 35.0%
AAACAAGCTCCCAAAGGTTA+TGG - chr5.2:6831847-6831866 MS.gene09633:CDS 40.0%
AAAGCTGAAACAAACAGAGG+TGG - chr5.2:6833061-6833080 MS.gene09633:CDS 40.0%
AACCATACTTCAACTTGTCG+TGG + chr5.2:6832274-6832293 None:intergenic 40.0%
AAGTTCCTCACCATAACCTT+TGG + chr5.2:6831860-6831879 None:intergenic 40.0%
AATCACAAACAAGCTCCCAA+AGG - chr5.2:6831841-6831860 MS.gene09633:CDS 40.0%
AGTTCCTCACCATAACCTTT+GGG + chr5.2:6831859-6831878 None:intergenic 40.0%
CGAAAATAGGAGGCTCAAAA+AGG - chr5.2:6833124-6833143 MS.gene09633:CDS 40.0%
GATTCTCTTCACCTTGTTCT+AGG - chr5.2:6831691-6831710 MS.gene09633:CDS 40.0%
TAAAATCACTGCCTTCACCA+TGG - chr5.2:6833274-6833293 MS.gene09633:CDS 40.0%
TAGCGAGACAGTTGAATCTA+AGG - chr5.2:6832248-6832267 MS.gene09633:intron 40.0%
! GAAATGAGTATTTGGAGCCA+TGG + chr5.2:6833294-6833313 None:intergenic 40.0%
! GTGGTGGTAGTTATTTCCTT+TGG + chr5.2:6831742-6831761 None:intergenic 40.0%
AACGAGCCATCCTTAACGTT+AGG - chr5.2:6831790-6831809 MS.gene09633:CDS 45.0%
AAGTATGGTTCCAGAATCGG+AGG - chr5.2:6832284-6832303 MS.gene09633:intron 45.0%
ACCAGAGAGTCCTAACGTTA+AGG + chr5.2:6831803-6831822 None:intergenic 45.0%
AGTATGGTTCCAGAATCGGA+GGG - chr5.2:6832285-6832304 MS.gene09633:intron 45.0%
GAGAGTCCTAACGTTAAGGA+TGG + chr5.2:6831799-6831818 None:intergenic 45.0%
GCTGCAGAAGGATTGTTGAA+AGG + chr5.2:6833323-6833342 None:intergenic 45.0%
TAACGTTAAGGATGGCTCGT+TGG + chr5.2:6831791-6831810 None:intergenic 45.0%
TCCTTAACGTTAGGACTCTC+TGG - chr5.2:6831799-6831818 MS.gene09633:CDS 45.0%
! AGTATTTGGAGCCATGGTGA+AGG + chr5.2:6833288-6833307 None:intergenic 45.0%
!!! AACTTATATTAAATAAATTT+TGG - chr5.2:6833021-6833040 MS.gene09633:CDS 5.0%
AGCTCCCAAAGGTTATGGTG+AGG - chr5.2:6831852-6831871 MS.gene09633:CDS 50.0%
AGTTTATGTCCGTCCGTACC+TGG + chr5.2:6832311-6832330 None:intergenic 50.0%
ATTAGAACCACCACCACCGT+CGG + chr5.2:6833255-6833274 None:intergenic 50.0%
GCAGGCATAGGCATGTACAA+AGG + chr5.2:6833185-6833204 None:intergenic 50.0%
GGAATAGGGATTCATGGTGG+TGG + chr5.2:6831764-6831783 None:intergenic 50.0%
GGAGGTGGAATAGGGATTCA+TGG + chr5.2:6831770-6831789 None:intergenic 50.0%
GGTGGAATAGGGATTCATGG+TGG + chr5.2:6831767-6831786 None:intergenic 50.0%
TCTTTCGCAAGAAGGGCAGA+TGG + chr5.2:6833219-6833238 None:intergenic 50.0%
TGCCCTTCTTGCGAAAGACT+CGG - chr5.2:6833221-6833240 MS.gene09633:CDS 50.0%
! GGCCACGACAAGTTGAAGTA+TGG - chr5.2:6832269-6832288 MS.gene09633:intron 50.0%
!! ATAGGGATTCATGGTGGTGG+TGG + chr5.2:6831761-6831780 None:intergenic 50.0%
!! GAGAGTGCTGCAAGTGAAGA+GGG - chr5.2:6831933-6831952 MS.gene09633:CDS 50.0%
CGTTAAGGATGGCTCGTTGG+AGG + chr5.2:6831788-6831807 None:intergenic 55.0%
GCAAGAAGGGCAGATGGAGA+GGG + chr5.2:6833213-6833232 None:intergenic 55.0%
GGCCGAGTCTTTCGCAAGAA+GGG + chr5.2:6833226-6833245 None:intergenic 55.0%
GGCTCGTTGGAGGTGGAATA+GGG + chr5.2:6831778-6831797 None:intergenic 55.0%
TAAGGATGGCTCGTTGGAGG+TGG + chr5.2:6831785-6831804 None:intergenic 55.0%
TGGCTCGTTGGAGGTGGAAT+AGG + chr5.2:6831779-6831798 None:intergenic 55.0%
!! GGAGAGTGCTGCAAGTGAAG+AGG - chr5.2:6831932-6831951 MS.gene09633:CDS 55.0%
AGAAGGGCAGATGGAGAGGG+TGG + chr5.2:6833210-6833229 None:intergenic 60.0%
CAGAATCGGAGGGCCAGGTA+CGG - chr5.2:6832295-6832314 MS.gene09633:intron 60.0%
CGCAAGAAGGGCAGATGGAG+AGG + chr5.2:6833214-6833233 None:intergenic 60.0%
CGGCCGAGTCTTTCGCAAGA+AGG + chr5.2:6833227-6833246 None:intergenic 60.0%
!! GGGATTCATGGTGGTGGTGG+TGG + chr5.2:6831758-6831777 None:intergenic 60.0%
ATCGGAGGGCCAGGTACGGA+CGG - chr5.2:6832299-6832318 MS.gene09633:intron 65.0%
CAGATGGAGAGGGTGGCTGC+AGG + chr5.2:6833203-6833222 None:intergenic 65.0%
CGTACCTGGCCCTCCGATTC+TGG + chr5.2:6832297-6832316 None:intergenic 65.0%
GAGAGGGTGGCTGCAGGCAT+AGG + chr5.2:6833197-6833216 None:intergenic 65.0%
GGTTCCAGAATCGGAGGGCC+AGG - chr5.2:6832290-6832309 MS.gene09633:intron 65.0%
AGACTCGGCCGCGTCGCCGA+CGG - chr5.2:6833236-6833255 MS.gene09633:CDS 75.0%
CACCACCACCGTCGGCGACG+CGG + chr5.2:6833247-6833266 None:intergenic 75.0%
!! CGCGTCGCCGACGGTGGTGG+TGG - chr5.2:6833245-6833264 MS.gene09633:CDS 80.0%
! CTCGGCCGCGTCGCCGACGG+TGG - chr5.2:6833239-6833258 MS.gene09633:CDS 85.0%
! GGCCGCGTCGCCGACGGTGG+TGG - chr5.2:6833242-6833261 MS.gene09633:CDS 85.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 6831670 6833349 6831670 ID=MS.gene09633
chr5.2 mRNA 6831670 6833349 6831670 ID=MS.gene09633.t1;Parent=MS.gene09633
chr5.2 exon 6832903 6833349 6832903 ID=MS.gene09633.t1.exon1;Parent=MS.gene09633.t1
chr5.2 CDS 6832903 6833349 6832903 ID=cds.MS.gene09633.t1;Parent=MS.gene09633.t1
chr5.2 exon 6832708 6832787 6832708 ID=MS.gene09633.t1.exon2;Parent=MS.gene09633.t1
chr5.2 CDS 6832708 6832787 6832708 ID=cds.MS.gene09633.t1;Parent=MS.gene09633.t1
chr5.2 exon 6831670 6831961 6831670 ID=MS.gene09633.t1.exon3;Parent=MS.gene09633.t1
chr5.2 CDS 6831670 6831961 6831670 ID=cds.MS.gene09633.t1;Parent=MS.gene09633.t1
Gene Sequence

>MS.gene09633

ATGGGTCTTAATAATGATCAAGATTCTCTTCACCTTGTTCTAGGTTTATCTTTGAATACTTCTACTACTCCAAAGGAAATAACTACCACCACCACCACCATGAATCCCTATTCCACCTCCAACGAGCCATCCTTAACGTTAGGACTCTCTGGTGAGAGTTATAACCGTACAAATCACAAACAAGCTCCCAAAGGTTATGGTGAGGAACTTTGTAGACAAACTTCATCACCTCATAGTGTTGTTAATTCATCTTTCTCAAGTGGGAGAGTGCTGCAAGTGAAGAGGGAGAGAGATGAAGAAGAAGAAGTAGAAGAAGAAGAGAGGGTTTCTTCAAGAGTTAGTGATGAAGATGAAGATGCTACAAATGCTAGAAAGAAACTTAGGCTTACCAAAGAACAATCACTATTGCTTGAAGAAAGCTTCAAACTACATAGCACTCTCAATCCTGTAATTATTTTTCTCATCTCTTCTAAATTCTAATTAATTAAATTAACTAATTAAATAATTAGAGTAATGATTAATAATAATATTATATTAATATTCTGTTGGATTTGATTTTCAGAAACAAAAACAAGCTTTAGCGAGACAGTTGAATCTAAGGCCACGACAAGTTGAAGTATGGTTCCAGAATCGGAGGGCCAGGTACGGACGGACATAAACTTTTTCATTATATACCGTACATCACCATTATAGAGTCATGAAAATTAATATTGAGATATATTTAAATAAATTGATACAAAAAAATTATGTAATTATCTACCACAAATTTAGTAGCTAGACAGAGTTTCTGCATTTTTTTTGTTGCTATTTCTAGATATTTTATGAATATCATGTGGTATATTGTATGTATAAATCTTCTTAAAAAATCTTATATTTAAGGACAATATTTTTGATAAAAAAATTAATAGTAATTTTTTTTAACATCTATTAATTTGTCCTTTTTTTTTTTACAAAACTCATTTTGCATTATTTATTATATTAATTATTTTTTTACTAAATCACCTCTATTTATTTTACATATAGGAAATATAATTTATTTTCTTATCTTATAAGGGTTAATATGAAAGAGAGAGAAAAAAATTAGGATAATAATATATACAACTATGTTGCCAATAATTATAAGAGCAATTTTAAAAATCGATACAGATTATTCACAAATTTATTATTATTAACCAAATTAACTATTTTTTATTAGTTAAATAATTTTTTTTATTAAATCCTCTCAAAAAAAGTCTTATATTAAAGTAGGGAGGGAATATAATTTAAAAAGCCTTCCTTTGCTTTTGGATTTGTGGTTGTTAAGTATGGATTTGACAGACTAAGCTAATAAATGTTGGTGCATGTTTGGTGTAACTTATATTAAATAAATTTTGGTTTGAATTTTACAGAACAAAGCTGAAACAAACAGAGGTGGATTGCGAGTTCTTGAAGAAATGTTGTGAAACATTAACAGACGAAAATAGGAGGCTCAAAAAGGAGTTGCAAGAGTTGAAATCATTGAAAGTAGCACAACCTTTGTACATGCCTATGCCTGCAGCCACCCTCTCCATCTGCCCTTCTTGCGAAAGACTCGGCCGCGTCGCCGACGGTGGTGGTGGTTCTAATAAAATCACTGCCTTCACCATGGCTCCAAATACTCATTTCTACAATCCTTTCAACAATCCTTCTGCAGCATGTTAA
Protein sequence

>MS.gene09633.t1

MGLNNDQDSLHLVLGLSLNTSTTPKEITTTTTTMNPYSTSNEPSLTLGLSGESYNRTNHKQAPKGYGEELCRQTSSPHSVVNSSFSSGRVLQVKRERDEEEEVEEEERVSSRVSDEDEDATNARKKLRLTKEQSLLLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKSLKVAQPLYMPMPAATLSICPSCERLGRVADGGGGSNKITAFTMAPNTHFYNPFNNPSAAC