AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09644

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09644.t1 MTR_5g014640 93.293 328 20 1 1 328 1 326 0.0 604
MS.gene09644.t1 MTR_4g097940 46.110 347 141 13 1 324 1 324 5.55e-81 249
MS.gene09644.t1 MTR_4g097920 43.228 347 151 13 1 324 1 324 3.29e-75 234
MS.gene09644.t1 MTR_4g097920 42.771 332 145 12 15 324 1 309 4.36e-70 221
MS.gene09644.t1 MTR_2g010450 35.511 352 189 12 2 323 5 348 5.25e-52 175
MS.gene09644.t1 MTR_4g092700 33.746 323 184 10 15 324 24 329 1.15e-47 163
MS.gene09644.t1 MTR_5g014600 39.916 238 122 6 104 325 102 334 5.37e-46 159
MS.gene09644.t1 MTR_5g014520 38.023 263 143 4 63 323 83 327 5.55e-45 156
MS.gene09644.t1 MTR_4g009110 43.750 192 98 3 141 325 161 349 1.84e-43 153
MS.gene09644.t1 MTR_4g009540 39.823 226 117 4 116 325 108 330 2.53e-42 149
MS.gene09644.t1 MTR_2g104550 36.047 258 139 6 75 325 73 311 3.20e-42 149
MS.gene09644.t1 MTR_0250s0040 42.045 176 101 1 151 325 85 260 8.85e-42 146
MS.gene09644.t1 MTR_2g104560 40.541 185 101 4 145 325 45 224 1.41e-41 144
MS.gene09644.t1 MTR_4g067010 41.436 181 100 2 147 325 140 316 6.00e-41 145
MS.gene09644.t1 MTR_8g009020 39.153 189 103 3 147 325 136 322 1.28e-39 142
MS.gene09644.t1 MTR_0011s0260 43.023 172 97 1 152 322 181 352 4.28e-39 142
MS.gene09644.t1 MTR_0011s0210 43.353 173 95 2 152 322 181 352 5.86e-39 141
MS.gene09644.t1 MTR_4g066460 41.262 206 104 4 126 325 130 324 2.02e-38 139
MS.gene09644.t1 MTR_4g009540 40.000 205 104 4 116 304 108 309 3.16e-38 138
MS.gene09644.t1 MTR_5g014560 38.693 199 117 3 131 325 106 303 3.20e-38 138
MS.gene09644.t1 MTR_0246s0020 40.201 199 103 6 138 325 181 374 1.31e-37 138
MS.gene09644.t1 MTR_6g047570 40.805 174 102 1 149 321 154 327 2.52e-37 136
MS.gene09644.t1 MTR_7g080780 39.665 179 100 1 147 325 145 315 1.07e-36 134
MS.gene09644.t1 MTR_7g080780 39.665 179 100 1 147 325 158 328 1.23e-36 134
MS.gene09644.t1 MTR_0246s0020 43.258 178 85 6 138 304 181 353 5.15e-36 134
MS.gene09644.t1 MTR_2g104490 34.263 251 139 6 87 324 69 306 6.28e-36 132
MS.gene09644.t1 MTR_4g066380 38.308 201 116 4 126 325 128 321 3.31e-35 130
MS.gene09644.t1 MTR_8g069740 34.483 232 131 6 79 304 49 265 3.07e-34 126
MS.gene09644.t1 MTR_2g104490 35.065 231 124 6 87 304 69 286 1.67e-33 125
MS.gene09644.t1 MTR_0246s0050 35.263 190 114 3 138 325 134 316 7.69e-33 124
MS.gene09644.t1 MTR_2g104650 40.860 186 103 3 147 327 87 270 9.01e-33 123
MS.gene09644.t1 MTR_4g098035 35.263 190 114 3 138 325 155 337 1.35e-32 124
MS.gene09644.t1 MTR_4g097950 36.058 208 115 3 133 325 45 249 1.05e-31 119
MS.gene09644.t1 MTR_2g104590 33.673 196 103 4 137 327 52 225 6.51e-31 117
MS.gene09644.t1 MTR_8g009010 36.364 176 76 2 147 321 127 267 7.43e-31 119
MS.gene09644.t1 MTR_2g104500 37.714 175 99 3 154 325 104 271 1.40e-29 114
MS.gene09644.t1 MTR_2g104530 34.091 220 122 4 111 325 72 273 1.50e-29 114
MS.gene09644.t1 MTR_6g047550 63.636 66 24 0 149 214 168 233 3.44e-21 91.7
MS.gene09644.t1 MTR_4g009420 35.762 151 80 1 177 327 65 198 1.43e-20 88.2
MS.gene09644.t1 MTR_4g009420 39.062 128 61 1 177 304 65 175 5.07e-20 87.0
MS.gene09644.t1 MTR_8g067280 35.583 163 71 4 147 284 451 604 5.31e-20 91.3
MS.gene09644.t1 MTR_5g014550 35.714 126 80 1 184 308 54 179 1.46e-19 85.5
MS.gene09644.t1 MTR_7g451650 33.775 151 91 1 177 327 57 198 2.79e-19 84.7
MS.gene09644.t1 MTR_7g451650 36.719 128 72 1 177 304 57 175 3.81e-19 84.3
MS.gene09644.t1 MTR_4g009510 31.098 164 102 3 165 327 53 206 1.40e-18 83.2
MS.gene09644.t1 MTR_1g072320 33.333 183 104 5 155 324 471 648 3.05e-18 85.9
MS.gene09644.t1 MTR_5g030430 35.758 165 76 5 147 288 482 639 9.42e-18 84.3
MS.gene09644.t1 MTR_7g117670 28.729 181 106 2 155 327 403 568 1.62e-17 83.6
MS.gene09644.t1 MTR_8g027495 40.367 109 58 2 155 263 459 560 6.38e-17 82.0
MS.gene09644.t1 MTR_7g050350 31.690 142 88 1 183 324 1 133 1.32e-16 75.9
MS.gene09644.t1 MTR_7g451650 31.690 142 88 1 183 324 1 133 1.32e-16 75.9
MS.gene09644.t1 MTR_7g083900 30.481 187 111 4 154 326 286 467 2.74e-16 79.7
MS.gene09644.t1 MTR_7g083900 30.481 187 110 4 154 326 286 466 7.63e-16 78.6
MS.gene09644.t1 MTR_8g024770 36.029 136 71 4 155 278 280 411 2.62e-15 76.6
MS.gene09644.t1 MTR_3g030700 28.638 213 128 7 130 324 166 372 4.63e-15 75.5
MS.gene09644.t1 MTR_8g024790 29.480 173 117 2 155 322 292 464 1.11e-14 74.7
MS.gene09644.t1 MTR_8g064700 25.146 171 122 2 138 302 228 398 1.63e-14 74.3
MS.gene09644.t1 MTR_3g498695 30.818 159 95 5 154 299 298 454 1.76e-13 71.2
MS.gene09644.t1 MTR_3g498695 29.545 176 104 6 154 316 298 466 1.77e-13 71.2
MS.gene09644.t1 MTR_1g112680 32.836 134 81 3 86 218 256 381 5.09e-13 70.1
MS.gene09644.t1 MTR_7g096350 34.146 123 54 3 145 263 342 441 6.77e-13 69.7
MS.gene09644.t1 MTR_2g081040 26.519 181 120 4 156 324 179 358 2.85e-12 67.4
MS.gene09644.t1 MTR_5g030770 26.596 282 170 9 68 325 47 315 4.77e-12 66.2
MS.gene09644.t1 MTR_3g104100 25.967 181 121 4 156 324 197 376 7.69e-12 65.9
MS.gene09644.t1 MTR_4g057270 30.496 141 83 4 156 287 151 285 1.08e-11 65.5
MS.gene09644.t1 MTR_8g098275 27.059 170 88 4 151 287 398 564 1.58e-11 65.5
MS.gene09644.t1 MTR_8g098275 27.059 170 88 4 151 287 305 471 1.75e-11 65.5
MS.gene09644.t1 MTR_8g098275 27.711 166 84 4 155 287 245 407 1.80e-11 65.1
MS.gene09644.t1 MTR_2g084280 30.714 140 84 4 156 289 135 267 2.56e-11 63.9
MS.gene09644.t1 MTR_2g038040 24.352 193 130 5 132 309 29 220 4.87e-11 62.4
MS.gene09644.t1 MTR_3g111290 29.379 177 106 4 150 325 169 327 5.10e-11 63.2
MS.gene09644.t1 MTR_5g030770 26.596 282 164 9 68 325 47 309 8.07e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09644.t1 AT4G37850 35.988 339 186 13 2 324 1 324 1.74e-49 168
MS.gene09644.t1 AT4G37850 35.988 339 186 13 2 324 1 324 1.74e-49 168
MS.gene09644.t1 AT2G22760 43.784 185 99 2 146 325 111 295 8.17e-46 157
MS.gene09644.t1 AT2G22760 46.012 163 84 1 146 304 111 273 2.36e-43 151
MS.gene09644.t1 AT2G22750 33.819 343 153 14 2 306 1 307 1.96e-42 150
MS.gene09644.t1 AT2G22750 33.819 343 153 14 2 306 5 311 2.11e-42 150
MS.gene09644.t1 AT2G22750 33.819 343 153 14 2 306 5 311 6.64e-42 148
MS.gene09644.t1 AT2G22750 45.763 177 69 4 146 306 118 283 1.72e-39 141
MS.gene09644.t1 AT2G22750 45.763 177 69 4 146 306 118 283 6.13e-39 140
MS.gene09644.t1 AT2G22770 39.810 211 109 3 132 324 108 318 3.81e-37 135
MS.gene09644.t1 AT4G17880 30.556 216 116 6 91 289 354 552 3.36e-20 91.7
MS.gene09644.t1 AT5G46760 34.356 163 80 4 145 289 402 555 4.09e-19 88.6
MS.gene09644.t1 AT1G32640 35.099 151 92 3 145 289 439 589 8.65e-17 81.6
MS.gene09644.t1 AT2G46510 27.322 183 106 3 145 320 382 544 3.24e-16 79.7
MS.gene09644.t1 AT1G01260 35.099 151 64 4 150 290 429 555 4.86e-16 79.3
MS.gene09644.t1 AT1G01260 35.099 151 64 4 150 290 429 555 4.86e-16 79.3
MS.gene09644.t1 AT1G01260 35.099 151 64 4 150 290 429 555 4.86e-16 79.3
MS.gene09644.t1 AT5G57150 26.455 189 119 3 132 305 33 216 2.33e-15 75.1
MS.gene09644.t1 AT5G57150 26.344 186 117 3 132 302 32 212 2.53e-15 74.3
MS.gene09644.t1 AT5G57150 26.344 186 117 3 132 302 33 213 3.96e-15 73.9
MS.gene09644.t1 AT5G57150 26.344 186 117 3 132 302 33 213 4.47e-15 73.6
MS.gene09644.t1 AT5G57150 26.154 195 124 3 132 311 32 221 4.92e-15 73.9
MS.gene09644.t1 AT1G63650 29.381 194 103 6 155 324 406 589 8.20e-15 75.5
MS.gene09644.t1 AT1G63650 29.381 194 103 6 155 324 406 589 8.20e-15 75.5
MS.gene09644.t1 AT1G63650 29.381 194 103 6 155 324 406 589 8.20e-15 75.5
MS.gene09644.t1 AT4G09820 34.884 129 63 2 155 282 364 472 1.50e-14 74.7
MS.gene09644.t1 AT1G12860 29.444 180 115 4 154 326 267 441 1.51e-14 74.3
MS.gene09644.t1 AT1G12860 31.373 153 98 3 154 299 267 419 1.63e-14 74.3
MS.gene09644.t1 AT2G16910 27.684 177 105 4 155 308 315 491 1.39e-13 72.0
MS.gene09644.t1 AT4G29930 30.137 146 89 3 154 296 54 189 1.51e-13 69.7
MS.gene09644.t1 AT4G29930 30.822 146 89 3 155 296 55 192 2.32e-13 68.9
MS.gene09644.t1 AT4G29930 30.345 145 88 3 155 296 55 189 2.33e-13 68.9
MS.gene09644.t1 AT5G41315 29.146 199 102 9 155 324 442 630 2.03e-12 68.6
MS.gene09644.t1 AT5G41315 29.146 199 102 9 155 324 447 635 2.15e-12 68.2
MS.gene09644.t1 AT5G41315 29.146 199 102 9 155 324 450 638 2.26e-12 68.2
MS.gene09644.t1 AT5G65640 28.889 180 112 5 150 325 174 341 3.80e-12 67.0
MS.gene09644.t1 AT3G26744 29.545 176 106 6 154 317 307 476 5.73e-12 66.6
MS.gene09644.t1 AT3G26744 29.545 176 106 6 154 317 307 476 5.73e-12 66.6
MS.gene09644.t1 AT3G26744 29.545 176 106 6 154 317 307 476 5.73e-12 66.6
MS.gene09644.t1 AT4G16430 45.333 75 37 1 145 215 307 381 5.91e-12 66.6
MS.gene09644.t1 AT3G26744 31.013 158 96 5 154 299 307 463 9.19e-12 66.2
MS.gene09644.t1 AT4G00870 29.927 137 92 1 155 287 250 386 1.01e-11 65.9
MS.gene09644.t1 AT4G29930 26.667 165 99 3 154 296 54 218 1.69e-11 63.9
MS.gene09644.t1 AT4G29930 26.667 165 99 3 154 296 54 218 1.69e-11 63.9
MS.gene09644.t1 AT4G29930 26.829 164 98 3 155 296 55 218 2.57e-11 63.5
MS.gene09644.t1 AT2G28160 26.316 190 101 5 125 289 95 270 9.74e-11 62.4

Find 63 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTCAACTGGTTAATTT+TGG 0.110602 5.2:-6610009 None:intergenic
GATACTCTTACTTCGATTTC+AGG 0.236620 5.2:-6609181 None:intergenic
GTTTCAACTTGGAAACAATT+TGG 0.254789 5.2:-6608003 None:intergenic
TACTTTGGACAGTGAGATTA+AGG 0.260165 5.2:-6609282 None:intergenic
TTCAGGAAGTGGTTGGTTAT+TGG 0.276191 5.2:-6609164 None:intergenic
GCTCTTTCAGCCATTGTTCC+TGG 0.288584 5.2:+6608372 MS.gene09644:CDS
CCAAAGTTGTCGAATAATAT+TGG 0.304765 5.2:-6607952 None:intergenic
TCATCATCATCGTCATCATT+AGG 0.314724 5.2:-6609130 None:intergenic
TCGAGCTTGAGCAGTGTTCC+TGG 0.329696 5.2:-6608295 None:intergenic
AATGAATTGAGGTGATGAAT+AGG 0.381227 5.2:-6608085 None:intergenic
CATTGTTCCTGGCCTCAAAA+AGG 0.384959 5.2:+6608383 MS.gene09644:CDS
CTTCCAGCTTTGGTTTCTCA+AGG 0.393979 5.2:+6608219 MS.gene09644:CDS
TAAAATTGCTTAGAAGCAAT+TGG 0.399867 5.2:-6608132 None:intergenic
GTTGTTTCCAAAGGGCAAAA+AGG 0.400410 5.2:-6609308 None:intergenic
CATCATCATCGTCATCATTA+GGG 0.403065 5.2:-6609129 None:intergenic
CCAATATTATTCGACAACTT+TGG 0.407380 5.2:+6607952 MS.gene09644:CDS
AGTAGTATGCTTACAAGTTC+AGG 0.414356 5.2:-6607671 None:intergenic
AGAAGCAATTGGTGTTGAAC+TGG 0.425456 5.2:-6608121 None:intergenic
ATGGACAAAGCTTCTGTGTT+GGG 0.439391 5.2:+6608992 MS.gene09644:CDS
TGTGACAGCAAAGGATCTCC+TGG 0.446189 5.2:+6609961 MS.gene09644:CDS
CAAGAGAATCCATCGGGTAT+TGG 0.448559 5.2:-6607924 None:intergenic
TGAAAGAGCGATGAAACTTC+GGG 0.456547 5.2:-6608358 None:intergenic
CATCAAGATGAGTTTCAACT+TGG 0.457168 5.2:-6608014 None:intergenic
GGACGTGCCGCTACGGTGCT+TGG 0.467945 5.2:+6609247 MS.gene09644:CDS
ATCAACAATGTTGTTTCCAA+AGG 0.469768 5.2:-6609317 None:intergenic
TCAACAATGTTGTTTCCAAA+GGG 0.475298 5.2:-6609316 None:intergenic
CTGAAAGAGCGATGAAACTT+CGG 0.488970 5.2:-6608359 None:intergenic
TGAGGTGATGAATAGGAAGA+AGG 0.490585 5.2:-6608078 None:intergenic
AAGCCTGTCGTATGCTTCCC+AGG 0.497417 5.2:-6609979 None:intergenic
CTTCGATTTCAGGAAGTGGT+TGG 0.508259 5.2:-6609171 None:intergenic
TAAAACCTAAAGTCGAGAAA+AGG 0.508413 5.2:+6608175 MS.gene09644:CDS
TGTTCCTGGTCTGATTCACT+TGG 0.510038 5.2:-6608281 None:intergenic
GAGGTGATGAATAGGAAGAA+GGG 0.522927 5.2:-6608077 None:intergenic
CTTACTTCGATTTCAGGAAG+TGG 0.529255 5.2:-6609175 None:intergenic
TTTATTTACCTTAGCAACAA+TGG 0.529541 5.2:-6609344 None:intergenic
GAACCTTGAGAAACCAAAGC+TGG 0.540922 5.2:-6608222 None:intergenic
TGATGTAACCATTGTTGCTA+AGG 0.545162 5.2:+6609336 MS.gene09644:CDS
ACAAGTTCAGGCACATAGGT+GGG 0.548457 5.2:-6607659 None:intergenic
ACAAGCACGTTTGCAGACAC+TGG 0.553923 5.2:+6609042 MS.gene09644:CDS
ACACAGTGGACGTGCCGCTA+CGG 0.562208 5.2:+6609240 MS.gene09644:CDS
AATTCTCTTGCAGAGGAACA+AGG 0.562972 5.2:+6609931 MS.gene09644:intron
CAAGTTCAGGCACATAGGTG+GGG 0.574321 5.2:-6607658 None:intergenic
CTTCTTTAACCAATACCCGA+TGG 0.574424 5.2:+6607915 MS.gene09644:CDS
TGTTCAAAAGAAATGAATTG+AGG 0.577900 5.2:-6608096 None:intergenic
TCAAGCTCGAGAACATGTAA+TGG 0.585662 5.2:+6608308 MS.gene09644:CDS
TACAAGTTCAGGCACATAGG+TGG 0.586428 5.2:-6607660 None:intergenic
GAGATGCAAGAGAATCCATC+GGG 0.590902 5.2:-6607930 None:intergenic
GCTTACAAGTTCAGGCACAT+AGG 0.592149 5.2:-6607663 None:intergenic
AACTTGGAAACAATTTGGTG+TGG 0.596690 5.2:-6607998 None:intergenic
CTCATCTTGATGATCAAACA+AGG 0.597867 5.2:+6608025 MS.gene09644:CDS
TCTCCTGGGAAGCATACGAC+AGG 0.600421 5.2:+6609976 MS.gene09644:CDS
GATGGACAAAGCTTCTGTGT+TGG 0.607222 5.2:+6608991 MS.gene09644:intron
GTGACAGCAAAGGATCTCCT+GGG 0.607386 5.2:+6609962 MS.gene09644:CDS
AGATCTCTTCACTTGAACTG+TGG 0.609751 5.2:-6609098 None:intergenic
GGAAAACTGTGTGACAGCAA+AGG 0.624039 5.2:+6609952 MS.gene09644:CDS
GGAGATGCAAGAGAATCCAT+CGG 0.627162 5.2:-6607931 None:intergenic
AAGTTCAGGCACATAGGTGG+GGG 0.650925 5.2:-6607657 None:intergenic
AATGGCCGAAAGAAAACGAA+GGG 0.657033 5.2:+6608326 MS.gene09644:CDS
TAATTGGCCAAGCACCGTAG+CGG 0.678187 5.2:-6609254 None:intergenic
AGCACGTTTGCAGACACTGG+AGG 0.686426 5.2:+6609045 MS.gene09644:CDS
ATAACCAAGTGAATCAGACC+AGG 0.687464 5.2:+6608277 MS.gene09644:CDS
TAATGGCCGAAAGAAAACGA+AGG 0.695210 5.2:+6608325 MS.gene09644:CDS
ATTCAATGTGACAAACACAG+TGG 0.762327 5.2:+6609226 MS.gene09644:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATTAACATTTCTA+AGG + chr5.2:6609428-6609447 MS.gene09644:intron 10.0%
!! AATTAATGTATTCAATATTA+TGG + chr5.2:6608960-6608979 MS.gene09644:intron 10.0%
!!! AAAAAATCATAAATTTTAGA+CGG + chr5.2:6609671-6609690 MS.gene09644:intron 10.0%
!!! TCAATAATTTATTTTTCTTT+TGG + chr5.2:6608581-6608600 MS.gene09644:intron 10.0%
!! CACAAAAAAAAAAAAAAAAG+AGG - chr5.2:6609722-6609741 None:intergenic 15.0%
!! TACAATATAAATATTGCAAT+TGG - chr5.2:6608923-6608942 None:intergenic 15.0%
!! TATAGGAAAATATTACATAT+AGG + chr5.2:6609391-6609410 MS.gene09644:intron 15.0%
!! TTTATGAATTATGATAATCT+AGG - chr5.2:6609907-6609926 None:intergenic 15.0%
!!! AAATTTTGAAATGAAAAATG+TGG + chr5.2:6609694-6609713 MS.gene09644:intron 15.0%
!!! AAGTTTATGAATTTTAAGAT+AGG - chr5.2:6607704-6607723 None:intergenic 15.0%
!!! CTCTTTTTTTTTTTTTTTTG+TGG + chr5.2:6609720-6609739 MS.gene09644:intron 15.0%
!!! TTGTTTTTATTTCATTTTCT+AGG + chr5.2:6608746-6608765 MS.gene09644:intron 15.0%
!!! TTTTTTTTTTTTTTTTGTGG+TGG + chr5.2:6609723-6609742 MS.gene09644:intron 15.0%
!! ACATTAATGATCCATATTAA+AGG + chr5.2:6608491-6608510 MS.gene09644:intron 20.0%
!! GCATACTTGAAAATAATAAA+CGG + chr5.2:6609589-6609608 MS.gene09644:intron 20.0%
!!! TATTTTCTTATGATCAGATT+AGG - chr5.2:6608646-6608665 None:intergenic 20.0%
!!! TCTTTAATTACTTTTGAACA+GGG + chr5.2:6607877-6607896 MS.gene09644:intron 20.0%
! AAATATTAATTCTCTTGCAG+AGG + chr5.2:6609924-6609943 MS.gene09644:intron 25.0%
! ATTATAACATGTTTGTGAGT+TGG - chr5.2:6608422-6608441 None:intergenic 25.0%
! GTAGTATGTTGATATAGAAA+TGG - chr5.2:6608460-6608479 None:intergenic 25.0%
! TAAAATTGCTTAGAAGCAAT+TGG - chr5.2:6608135-6608154 None:intergenic 25.0%
! TATTGACGAAAAACATGAAA+TGG - chr5.2:6608567-6608586 None:intergenic 25.0%
! TGATATAGAAATGGTTTGAA+TGG - chr5.2:6608451-6608470 None:intergenic 25.0%
! TGTTCAAAAGAAATGAATTG+AGG - chr5.2:6608099-6608118 None:intergenic 25.0%
! TTGGTAAGTTCAACTTAATT+AGG - chr5.2:6608904-6608923 None:intergenic 25.0%
! TTTATTTACCTTAGCAACAA+TGG - chr5.2:6609347-6609366 None:intergenic 25.0%
!! TGAGATTAAGGTTTTCTAAT+TGG - chr5.2:6609273-6609292 None:intergenic 25.0%
!!! CTCTTTAATTACTTTTGAAC+AGG + chr5.2:6607876-6607895 MS.gene09644:intron 25.0%
!!! TAACATTTCTAAGGTTGTTT+AGG + chr5.2:6609437-6609456 MS.gene09644:intron 25.0%
AAAACCAGACAATTATGACA+TGG + chr5.2:6609471-6609490 MS.gene09644:intron 30.0%
AAATGGTCACTAATATTGCT+AGG - chr5.2:6608550-6608569 None:intergenic 30.0%
AAGAGTAGACATCAAAAAGT+TGG + chr5.2:6608685-6608704 MS.gene09644:intron 30.0%
AATATTATGGTATGTGCAGA+TGG + chr5.2:6608973-6608992 MS.gene09644:intron 30.0%
AATGAATTGAGGTGATGAAT+AGG - chr5.2:6608088-6608107 None:intergenic 30.0%
AATGGTCACTAATATTGCTA+GGG - chr5.2:6608549-6608568 None:intergenic 30.0%
AGAGTAGACATCAAAAAGTT+GGG + chr5.2:6608686-6608705 MS.gene09644:intron 30.0%
ATCCATATTAAAGGCTGAAA+TGG + chr5.2:6608500-6608519 MS.gene09644:intron 30.0%
CCAAAGTTGTCGAATAATAT+TGG - chr5.2:6607955-6607974 None:intergenic 30.0%
CCAATATTATTCGACAACTT+TGG + chr5.2:6607952-6607971 MS.gene09644:CDS 30.0%
GTTTCAACTTGGAAACAATT+TGG - chr5.2:6608006-6608025 None:intergenic 30.0%
TAAAACCTAAAGTCGAGAAA+AGG + chr5.2:6608175-6608194 MS.gene09644:CDS 30.0%
! GATAAGATCATACCTTTTTG+AGG - chr5.2:6608398-6608417 None:intergenic 30.0%
! GTTTTACATCGGAATAATCA+AGG - chr5.2:6608161-6608180 None:intergenic 30.0%
!! AATTACTTTTGAACAGGGAA+TGG + chr5.2:6607882-6607901 MS.gene09644:intron 30.0%
!! ATCAACAATGTTGTTTCCAA+AGG - chr5.2:6609320-6609339 None:intergenic 30.0%
!! TCAACAATGTTGTTTCCAAA+GGG - chr5.2:6609319-6609338 None:intergenic 30.0%
!! TTATTTTTCTGGTCGAACTT+TGG + chr5.2:6607809-6607828 MS.gene09644:intron 30.0%
!!! TATCGATGTTTTGATCTTCT+TGG - chr5.2:6608055-6608074 None:intergenic 30.0%
!!! TCATTTTCTAGGATCAAATC+AGG + chr5.2:6608757-6608776 MS.gene09644:intron 30.0%
!!! TTGACCAAGCTTTATTTTTC+TGG + chr5.2:6607798-6607817 MS.gene09644:intron 30.0%
AGTAATGTTCTGCTTACACT+AGG + chr5.2:6608817-6608836 MS.gene09644:intron 35.0%
AGTAGTATGCTTACAAGTTC+AGG - chr5.2:6607674-6607693 None:intergenic 35.0%
ATTCAATGTGACAAACACAG+TGG + chr5.2:6609226-6609245 MS.gene09644:CDS 35.0%
CACCATTTCAGCCTTTAATA+TGG - chr5.2:6608505-6608524 None:intergenic 35.0%
CATCAAGATGAGTTTCAACT+TGG - chr5.2:6608017-6608036 None:intergenic 35.0%
CATCATCATCGTCATCATTA+GGG - chr5.2:6609132-6609151 None:intergenic 35.0%
GAGTAGACATCAAAAAGTTG+GGG + chr5.2:6608687-6608706 MS.gene09644:intron 35.0%
GATACTCTTACTTCGATTTC+AGG - chr5.2:6609184-6609203 None:intergenic 35.0%
GCTGAAGACAACAAAAAAAC+TGG + chr5.2:6609073-6609092 MS.gene09644:CDS 35.0%
TACTTTGGACAGTGAGATTA+AGG - chr5.2:6609285-6609304 None:intergenic 35.0%
TCAGCAACGAAAATTAGTGA+CGG - chr5.2:6609823-6609842 None:intergenic 35.0%
TCATCATCATCGTCATCATT+AGG - chr5.2:6609133-6609152 None:intergenic 35.0%
TCGACCAGAAAAATAAAGCT+TGG - chr5.2:6607805-6607824 None:intergenic 35.0%
TGATGTAACCATTGTTGCTA+AGG + chr5.2:6609336-6609355 MS.gene09644:CDS 35.0%
! AACTTGGAAACAATTTGGTG+TGG - chr5.2:6608001-6608020 None:intergenic 35.0%
! CAAAGATTTTCTTCCAGCTT+TGG + chr5.2:6608209-6608228 MS.gene09644:CDS 35.0%
! CTCATCTTGATGATCAAACA+AGG + chr5.2:6608025-6608044 MS.gene09644:CDS 35.0%
! CTTTTCCCTTCGTTTTCTTT+CGG - chr5.2:6608334-6608353 None:intergenic 35.0%
! TTACACCTTTTCTCGACTTT+AGG - chr5.2:6608183-6608202 None:intergenic 35.0%
!! CTCGACTTTAGGTTTTACAT+CGG - chr5.2:6608172-6608191 None:intergenic 35.0%
!!! GATGTTTTGATCTTCTTGGT+TGG - chr5.2:6608051-6608070 None:intergenic 35.0%
AATGGCCGAAAGAAAACGAA+GGG + chr5.2:6608326-6608345 MS.gene09644:CDS 40.0%
AATTCTCTTGCAGAGGAACA+AGG + chr5.2:6609931-6609950 MS.gene09644:intron 40.0%
ACGACCATGTCATAATTGTC+TGG - chr5.2:6609478-6609497 None:intergenic 40.0%
AGATCTCTTCACTTGAACTG+TGG - chr5.2:6609101-6609120 None:intergenic 40.0%
ATAACCAAGTGAATCAGACC+AGG + chr5.2:6608277-6608296 MS.gene09644:CDS 40.0%
ATGGACAAAGCTTCTGTGTT+GGG + chr5.2:6608992-6609011 MS.gene09644:CDS 40.0%
CAGCAACGAAAATTAGTGAC+GGG - chr5.2:6609822-6609841 None:intergenic 40.0%
CTGAAAGAGCGATGAAACTT+CGG - chr5.2:6608362-6608381 None:intergenic 40.0%
CTTACTTCGATTTCAGGAAG+TGG - chr5.2:6609178-6609197 None:intergenic 40.0%
CTTCTTTAACCAATACCCGA+TGG + chr5.2:6607915-6607934 MS.gene09644:CDS 40.0%
GAGGTGATGAATAGGAAGAA+GGG - chr5.2:6608080-6608099 None:intergenic 40.0%
TAATGGCCGAAAGAAAACGA+AGG + chr5.2:6608325-6608344 MS.gene09644:CDS 40.0%
TCAAGCTCGAGAACATGTAA+TGG + chr5.2:6608308-6608327 MS.gene09644:CDS 40.0%
TGAAAGAGCGATGAAACTTC+GGG - chr5.2:6608361-6608380 None:intergenic 40.0%
TGAGGTGATGAATAGGAAGA+AGG - chr5.2:6608081-6608100 None:intergenic 40.0%
TTAGTGAGATGTTCCAACCT+CGG - chr5.2:6609749-6609768 None:intergenic 40.0%
! AGTAGTACCTTTTTGCCCTT+TGG + chr5.2:6609301-6609320 MS.gene09644:CDS 40.0%
! GTTGTTTCCAAAGGGCAAAA+AGG - chr5.2:6609311-6609330 None:intergenic 40.0%
! TACTTTTGAACAGGGAATGG+AGG + chr5.2:6607885-6607904 MS.gene09644:intron 40.0%
! TTCAGGAAGTGGTTGGTTAT+TGG - chr5.2:6609167-6609186 None:intergenic 40.0%
!! AGAAGCAATTGGTGTTGAAC+TGG - chr5.2:6608124-6608143 None:intergenic 40.0%
!! AGGGCAAAAAGGTACTACTT+TGG - chr5.2:6609300-6609319 None:intergenic 40.0%
!!! TTTTTTTTTTGTGGTGGCCG+AGG + chr5.2:6609729-6609748 MS.gene09644:intron 40.0%
ACAAGTTCAGGCACATAGGT+GGG - chr5.2:6607662-6607681 None:intergenic 45.0%
CAAGAGAATCCATCGGGTAT+TGG - chr5.2:6607927-6607946 None:intergenic 45.0%
CATTGTTCCTGGCCTCAAAA+AGG + chr5.2:6608383-6608402 MS.gene09644:CDS 45.0%
CTTCGATTTCAGGAAGTGGT+TGG - chr5.2:6609174-6609193 None:intergenic 45.0%
GAACCTTGAGAAACCAAAGC+TGG - chr5.2:6608225-6608244 None:intergenic 45.0%
GAGATGCAAGAGAATCCATC+GGG - chr5.2:6607933-6607952 None:intergenic 45.0%
GATGGACAAAGCTTCTGTGT+TGG + chr5.2:6608991-6609010 MS.gene09644:intron 45.0%
GCTTACAAGTTCAGGCACAT+AGG - chr5.2:6607666-6607685 None:intergenic 45.0%
GGAAAACTGTGTGACAGCAA+AGG + chr5.2:6609952-6609971 MS.gene09644:CDS 45.0%
GGAGATGCAAGAGAATCCAT+CGG - chr5.2:6607934-6607953 None:intergenic 45.0%
TACAAGTTCAGGCACATAGG+TGG - chr5.2:6607663-6607682 None:intergenic 45.0%
TGTTCCTGGTCTGATTCACT+TGG - chr5.2:6608284-6608303 None:intergenic 45.0%
! CTTCCAGCTTTGGTTTCTCA+AGG + chr5.2:6608219-6608238 MS.gene09644:CDS 45.0%
!!! CTTTTTGAGGCCAGGAACAA+TGG - chr5.2:6608385-6608404 None:intergenic 45.0%
!!! GATCATACCTTTTTGAGGCC+AGG - chr5.2:6608393-6608412 None:intergenic 45.0%
!! TTTAATAATGTATTATATAT+AGG + chr5.2:6609374-6609393 MS.gene09644:intron 5.0%
AAGTTCAGGCACATAGGTGG+GGG - chr5.2:6607660-6607679 None:intergenic 50.0%
ACAAGCACGTTTGCAGACAC+TGG + chr5.2:6609042-6609061 MS.gene09644:CDS 50.0%
CAAGTTCAGGCACATAGGTG+GGG - chr5.2:6607661-6607680 None:intergenic 50.0%
GCTCTTTCAGCCATTGTTCC+TGG + chr5.2:6608372-6608391 MS.gene09644:CDS 50.0%
GTGACAGCAAAGGATCTCCT+GGG + chr5.2:6609962-6609981 MS.gene09644:CDS 50.0%
TGTGACAGCAAAGGATCTCC+TGG + chr5.2:6609961-6609980 MS.gene09644:CDS 50.0%
! TAATTGGCCAAGCACCGTAG+CGG - chr5.2:6609257-6609276 None:intergenic 50.0%
!!! TTTTTTGTGGTGGCCGAGGT+TGG + chr5.2:6609733-6609752 MS.gene09644:intron 50.0%
AAGCCTGTCGTATGCTTCCC+AGG - chr5.2:6609982-6610001 None:intergenic 55.0%
AGCACGTTTGCAGACACTGG+AGG + chr5.2:6609045-6609064 MS.gene09644:CDS 55.0%
TCGAGCTTGAGCAGTGTTCC+TGG - chr5.2:6608298-6608317 None:intergenic 55.0%
! TCTCCTGGGAAGCATACGAC+AGG + chr5.2:6609976-6609995 MS.gene09644:CDS 55.0%
! ACACAGTGGACGTGCCGCTA+CGG + chr5.2:6609240-6609259 MS.gene09644:CDS 60.0%
! GGACGTGCCGCTACGGTGCT+TGG + chr5.2:6609247-6609266 MS.gene09644:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 6607641 6610018 6607641 ID=MS.gene09644
chr5.2 mRNA 6607641 6610018 6607641 ID=MS.gene09644.t1;Parent=MS.gene09644
chr5.2 exon 6607641 6607679 6607641 ID=MS.gene09644.t1.exon1;Parent=MS.gene09644.t1
chr5.2 CDS 6607641 6607679 6607641 ID=cds.MS.gene09644.t1;Parent=MS.gene09644.t1
chr5.2 exon 6607898 6608404 6607898 ID=MS.gene09644.t1.exon2;Parent=MS.gene09644.t1
chr5.2 CDS 6607898 6608404 6607898 ID=cds.MS.gene09644.t1;Parent=MS.gene09644.t1
chr5.2 exon 6608992 6609357 6608992 ID=MS.gene09644.t1.exon3;Parent=MS.gene09644.t1
chr5.2 CDS 6608992 6609357 6608992 ID=cds.MS.gene09644.t1;Parent=MS.gene09644.t1
chr5.2 exon 6609944 6610018 6609944 ID=MS.gene09644.t1.exon4;Parent=MS.gene09644.t1
chr5.2 CDS 6609944 6610018 6609944 ID=cds.MS.gene09644.t1;Parent=MS.gene09644.t1
Gene Sequence

>MS.gene09644

ATGATGCAAATTATGTCCCCCACCTATGTGCCTGAACTTGTAAGCATACTACTATCATCACCTATCTTAAAATTCATAAACTTTAAGTAATCACAATTATAGCTGAACTTGAAGTATTGAAGTGATTCATCTTAAAATCTTAGCTCTCGAATAATTTTTGACCAAGCTTTATTTTTCTGGTCGAACTTTGGATTTGAAGAAATGAAGTTGCATGTGTATAAAAGAAGAAAGCTTACTCTTTAATTACTTTTGAACAGGGAATGGAGGATCTCAACTTCTTTAACCAATACCCGATGGATTCTCTTGCATCTCCAATATTATTCGACAACTTTGGCTTTCACTTTGATGACAACGAAACCACACCAAATTGTTTCCAAGTTGAAACTCATCTTGATGATCAAACAAGGCCAACCAAGAAGATCAAAACATCGATAAACCCTTCTTCCTATTCATCACCTCAATTCATTTCTTTTGAACACTCCAGTTCAACACCAATTGCTTCTAAGCAATTTTATAACCTTGATTATTCCGATGTAAAACCTAAAGTCGAGAAAAGGTGTAATGATAACAAAGATTTTCTTCCAGCTTTGGTTTCTCAAGGTTCTTATGAAGATCAAAAAATATTTTCAAATTATGATAACCAAGTGAATCAGACCAGGAACACTGCTCAAGCTCGAGAACATGTAATGGCCGAAAGAAAACGAAGGGAAAAGCTTACCCGAAGTTTCATCGCTCTTTCAGCCATTGTTCCTGGCCTCAAAAAGGTATGATCTTATCTCCAACTCACAAACATGTTATAATGTAACTCCATTCAAACCATTTCTATATCAACATACTACTAGAAAAAGAAACATTAATGATCCATATTAAAGGCTGAAATGGTGTGATCTCTCTAATTCTCTAGTCCCTAGCAATATTAGTGACCATTTCATGTTTTTCGTCAATAATTTATTTTTCTTTTGGAATGAAGACTTGTTTTAATTTCTGAGAAAAACAGTATAACCTAATCTGATCATAAGAAAATAAAATCAATTTTTAGACACAAAGAGTAGACATCAAAAAGTTGGGGATTAAATTGTTCTAGTTTCTTTTCTCAGAAACTAAATTGTTTTTATTTCATTTTCTAGGATCAAATCAGGTATCTAATTTTTTTATAATTTAAATTTTATAATTGTGAGTAATGTTCTGCTTACACTAGGTGCAACTAATTTCAGTAGTACTAAATTACTGATTAGTGAATAAACACACATGCAAGCTTAACCTAATTAAGTTGAACTTACCAATTGCAATATTTATATTGTACTAGAATTGAATGAATAAATTAATGTATTCAATATTATGGTATGTGCAGATGGACAAAGCTTCTGTGTTGGGAGATGCTATCAAGTACATGAAACAACTACAAGCACGTTTGCAGACACTGGAGGAACAAGCTGAAGACAACAAAAAAACTGGATCCACAGTTCAAGTGAAGAGATCTATTATCTTCCCTAATGATGACGATGATGATGATGATAGCAACTCCAATAACCAACCACTTCCTGAAATCGAAGTAAGAGTATCAAGCAAAGATGTACTCATCAAGATTCAATGTGACAAACACAGTGGACGTGCCGCTACGGTGCTTGGCCAATTAGAAAACCTTAATCTCACTGTCCAAAGTAGTACCTTTTTGCCCTTTGGAAACAACATTGTTGATGTAACCATTGTTGCTAAGGTAAATAAATTAATAATTTAATAATGTATTATATATAGGAAAATATTACATATAGGACATGTTTGAATTGAAAATAAATTAACATTTCTAAGGTTGTTTAGGAGAGCTTATGAAAAACCAGACAATTATGACATGGTCGTAAATTATTTCAACTTATTTTCATAAACTATTATAGAAAATTTATGAATACAAATTAACTTTATTTTATCTTTTGTTATAGAAATATGAATTGCATACTTGAAAATAATAAACGGACTATGTTATAAGCATTTAATGATGCAAGTTTGTATGTGCGTGTCTATATACACACACTAAAAAATCATAAATTTTAGACGGAAATTTTGAAATGAAAAATGTGGAACCTCTTTTTTTTTTTTTTTTGTGGTGGCCGAGGTTGGAACATCTCACTAATTATGTGTCTAAATTTTGTGACTAAAGAATTAGATAGACATTTCAACTTTCCCGTCACTAATTTTCGTTGCTGATTTTTTTTTTTTTAGTACACAGAATTGCATTTTAAATAAATTAATTTATTGAATTGTTAAACCTAGATTATCATAATTCATAAATATTAATTCTCTTGCAGAGGAACAAGGAAAACTGTGTGACAGCAAAGGATCTCCTGGGAAGCATACGACAGGCTTTAATCATCCAAAATTAA
Protein sequence

>MS.gene09644.t1

MMQIMSPTYVPELGMEDLNFFNQYPMDSLASPILFDNFGFHFDDNETTPNCFQVETHLDDQTRPTKKIKTSINPSSYSSPQFISFEHSSSTPIASKQFYNLDYSDVKPKVEKRCNDNKDFLPALVSQGSYEDQKIFSNYDNQVNQTRNTAQAREHVMAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAIKYMKQLQARLQTLEEQAEDNKKTGSTVQVKRSIIFPNDDDDDDDSNSNNQPLPEIEVRVSSKDVLIKIQCDKHSGRAATVLGQLENLNLTVQSSTFLPFGNNIVDVTIVAKRNKENCVTAKDLLGSIRQALIIQN