AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09645

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09645.t1 MTR_5g014600 87.768 327 20 4 1 320 1 314 0.0 560
MS.gene09645.t1 MTR_4g097950 53.527 241 81 7 88 320 12 229 4.02e-63 201
MS.gene09645.t1 MTR_2g010450 41.877 277 123 9 62 320 74 330 3.65e-51 173
MS.gene09645.t1 MTR_4g092700 44.672 244 95 8 86 320 98 310 3.19e-49 167
MS.gene09645.t1 MTR_5g014520 41.948 267 110 7 61 320 81 309 6.99e-47 161
MS.gene09645.t1 MTR_2g104550 41.532 248 115 8 75 320 72 291 7.37e-47 160
MS.gene09645.t1 MTR_5g014560 46.561 189 90 2 132 320 106 283 2.80e-44 154
MS.gene09645.t1 MTR_0246s0020 36.182 351 179 12 6 320 13 354 3.93e-44 155
MS.gene09645.t1 MTR_4g097940 40.152 264 103 11 64 320 90 305 4.15e-44 154
MS.gene09645.t1 MTR_8g009020 39.744 234 120 6 89 320 88 302 4.20e-44 154
MS.gene09645.t1 MTR_4g097920 40.613 261 106 9 64 320 75 290 1.23e-43 152
MS.gene09645.t1 MTR_4g097920 40.613 261 106 9 64 320 90 305 1.39e-43 152
MS.gene09645.t1 MTR_0246s0020 35.897 351 180 12 6 320 13 354 1.50e-43 154
MS.gene09645.t1 MTR_4g009540 40.164 244 117 5 80 320 93 310 8.17e-43 150
MS.gene09645.t1 MTR_2g104490 36.970 330 150 14 5 320 2 287 9.13e-43 149
MS.gene09645.t1 MTR_2g104490 41.453 234 113 7 87 320 78 287 2.58e-42 149
MS.gene09645.t1 MTR_4g009540 39.754 244 118 5 80 320 93 310 4.51e-42 148
MS.gene09645.t1 MTR_4g009110 39.837 246 119 7 80 320 108 329 4.69e-42 149
MS.gene09645.t1 MTR_5g014640 37.143 280 132 10 59 320 50 303 6.19e-42 148
MS.gene09645.t1 MTR_6g047570 34.104 346 159 13 2 320 8 311 2.38e-41 147
MS.gene09645.t1 MTR_0011s0260 45.294 170 80 2 152 320 178 335 2.42e-39 142
MS.gene09645.t1 MTR_0011s0210 44.970 169 82 2 152 320 178 335 5.52e-39 141
MS.gene09645.t1 MTR_0250s0040 38.813 219 117 5 104 320 37 240 1.72e-38 137
MS.gene09645.t1 MTR_0246s0050 40.000 195 93 4 130 320 122 296 1.16e-35 131
MS.gene09645.t1 MTR_4g098035 39.698 199 96 4 126 320 139 317 1.75e-35 131
MS.gene09645.t1 MTR_4g066460 41.538 195 95 3 126 320 129 304 4.33e-35 130
MS.gene09645.t1 MTR_7g080780 34.746 236 112 4 85 320 115 308 1.42e-33 126
MS.gene09645.t1 MTR_7g080780 34.746 236 112 4 85 320 102 295 1.45e-33 125
MS.gene09645.t1 MTR_2g104560 41.667 168 79 4 156 320 53 204 2.86e-33 122
MS.gene09645.t1 MTR_4g067010 40.217 184 91 4 141 320 128 296 6.29e-33 124
MS.gene09645.t1 MTR_8g069740 40.909 176 92 4 145 319 101 265 9.55e-32 119
MS.gene09645.t1 MTR_4g066380 32.836 335 158 12 7 320 13 301 1.28e-31 121
MS.gene09645.t1 MTR_2g104500 33.610 241 121 5 80 320 50 251 3.86e-31 118
MS.gene09645.t1 MTR_8g009010 38.554 166 54 2 156 320 133 251 3.92e-29 114
MS.gene09645.t1 MTR_2g104530 37.423 163 87 1 158 320 106 253 3.52e-28 110
MS.gene09645.t1 MTR_5g014550 44.118 136 57 2 187 318 54 174 2.14e-26 103
MS.gene09645.t1 MTR_2g104650 40.606 165 87 3 157 320 94 248 2.71e-26 105
MS.gene09645.t1 MTR_6g047550 32.941 255 117 8 2 224 8 240 4.34e-25 102
MS.gene09645.t1 MTR_2g104590 37.500 176 80 5 145 320 58 203 1.12e-24 100
MS.gene09645.t1 MTR_7g451650 39.855 138 62 2 183 320 60 176 1.06e-20 88.2
MS.gene09645.t1 MTR_7g451650 39.130 138 63 2 183 320 60 176 5.39e-20 86.7
MS.gene09645.t1 MTR_4g009510 37.662 154 73 5 168 320 53 184 3.69e-19 84.3
MS.gene09645.t1 MTR_4g009420 37.410 139 56 2 183 320 68 176 1.04e-18 83.2
MS.gene09645.t1 MTR_7g050350 37.778 135 63 2 186 320 1 114 1.43e-18 80.9
MS.gene09645.t1 MTR_7g451650 37.778 135 63 2 186 320 1 114 1.43e-18 80.9
MS.gene09645.t1 MTR_4g009420 35.065 154 68 3 168 320 54 176 1.52e-18 82.8
MS.gene09645.t1 MTR_7g117670 32.192 146 80 3 157 302 402 528 3.20e-17 82.4
MS.gene09645.t1 MTR_8g027495 29.452 146 84 2 157 302 458 584 9.93e-17 81.3
MS.gene09645.t1 MTR_7g096350 58.065 62 25 1 157 217 355 416 2.21e-16 80.1
MS.gene09645.t1 MTR_1g072320 29.139 151 88 2 157 299 470 609 1.86e-15 77.4
MS.gene09645.t1 MTR_3g498695 28.814 177 111 5 143 314 288 454 1.23e-14 74.7
MS.gene09645.t1 MTR_3g498695 28.814 177 111 5 143 314 288 454 1.25e-14 74.7
MS.gene09645.t1 MTR_8g067280 45.833 72 39 0 139 210 444 515 9.93e-14 72.0
MS.gene09645.t1 MTR_8g024790 28.736 174 106 6 123 293 262 420 1.12e-13 71.6
MS.gene09645.t1 MTR_7g083900 25.949 158 116 1 158 314 287 444 3.03e-13 70.5
MS.gene09645.t1 MTR_7g083900 25.949 158 116 1 158 314 287 444 3.17e-13 70.5
MS.gene09645.t1 MTR_5g030430 27.136 199 130 4 123 312 463 655 6.90e-13 69.7
MS.gene09645.t1 MTR_7g113830 23.350 197 136 4 130 314 90 283 1.33e-12 67.8
MS.gene09645.t1 MTR_8g064700 24.339 189 120 4 132 317 230 398 5.20e-12 66.6
MS.gene09645.t1 MTR_3g030700 24.713 174 123 3 142 314 181 347 8.20e-12 65.9
MS.gene09645.t1 MTR_1g112680 28.495 186 111 7 150 313 310 495 1.07e-11 65.9
MS.gene09645.t1 MTR_4g057270 28.369 141 85 5 159 296 151 278 1.09e-11 65.1
MS.gene09645.t1 MTR_7g110810 44.118 68 38 0 142 209 197 264 1.13e-11 65.5
MS.gene09645.t1 MTR_8g024770 26.347 167 102 5 134 293 259 411 1.18e-11 65.5
MS.gene09645.t1 MTR_8g098275 23.188 207 125 4 117 301 366 560 1.98e-11 65.1
MS.gene09645.t1 MTR_8g098275 23.188 207 125 4 117 301 273 467 2.78e-11 64.7
MS.gene09645.t1 MTR_8g098275 23.618 199 118 4 125 301 217 403 3.63e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09645.t1 AT4G37850 39.130 322 160 12 9 318 6 303 1.84e-48 165
MS.gene09645.t1 AT4G37850 39.130 322 160 12 9 318 6 303 1.84e-48 165
MS.gene09645.t1 AT2G22750 50.829 181 79 3 142 319 108 281 2.02e-42 149
MS.gene09645.t1 AT2G22750 50.829 181 79 3 142 319 108 281 2.12e-42 149
MS.gene09645.t1 AT2G22750 50.829 181 79 3 142 319 136 309 4.17e-42 149
MS.gene09645.t1 AT2G22750 50.829 181 79 3 142 319 136 309 4.64e-42 149
MS.gene09645.t1 AT2G22750 50.829 181 79 3 142 319 132 305 5.69e-42 148
MS.gene09645.t1 AT2G22760 46.108 167 80 3 155 320 117 274 4.05e-41 145
MS.gene09645.t1 AT2G22760 45.509 167 81 3 155 320 117 274 1.50e-40 144
MS.gene09645.t1 AT2G22770 42.604 169 93 2 156 320 131 299 1.58e-33 125
MS.gene09645.t1 AT1G32640 31.414 191 108 6 139 319 434 611 1.06e-16 81.3
MS.gene09645.t1 AT2G46510 47.297 74 39 0 139 212 377 450 1.42e-16 80.9
MS.gene09645.t1 AT1G12860 29.762 168 102 5 158 320 268 424 1.30e-14 74.3
MS.gene09645.t1 AT4G09820 28.859 149 75 2 153 301 359 476 1.46e-14 74.7
MS.gene09645.t1 AT1G12860 29.012 162 100 4 158 314 268 419 2.23e-14 73.9
MS.gene09645.t1 AT1G01260 39.241 79 48 0 137 215 413 491 3.49e-14 73.6
MS.gene09645.t1 AT1G01260 39.241 79 48 0 137 215 413 491 3.49e-14 73.6
MS.gene09645.t1 AT1G01260 39.241 79 48 0 137 215 413 491 3.49e-14 73.6
MS.gene09645.t1 AT4G16430 40.476 84 46 1 131 214 298 377 1.25e-13 71.6
MS.gene09645.t1 AT3G26744 28.235 170 106 5 158 320 308 468 1.69e-13 71.2
MS.gene09645.t1 AT3G26744 27.439 164 104 4 158 314 308 463 2.60e-13 70.9
MS.gene09645.t1 AT3G26744 27.439 164 104 4 158 314 308 463 2.60e-13 70.9
MS.gene09645.t1 AT3G26744 27.439 164 104 4 158 314 308 463 2.60e-13 70.9
MS.gene09645.t1 AT4G17880 28.402 169 106 4 131 299 394 547 2.73e-13 70.9
MS.gene09645.t1 AT5G46760 30.000 150 84 3 157 299 415 550 4.70e-13 70.1
MS.gene09645.t1 AT2G16910 28.144 167 87 4 158 302 315 470 1.04e-12 68.9
MS.gene09645.t1 AT5G41315 26.797 153 100 3 157 297 449 601 1.15e-12 68.9
MS.gene09645.t1 AT5G41315 26.797 153 100 3 157 297 446 598 1.20e-12 68.9
MS.gene09645.t1 AT5G41315 26.797 153 100 3 157 297 441 593 1.23e-12 68.9
MS.gene09645.t1 AT5G57150 30.055 183 112 5 144 316 41 217 1.46e-12 66.2
MS.gene09645.t1 AT5G57150 29.348 184 114 5 144 317 41 218 1.60e-12 66.2
MS.gene09645.t1 AT5G57150 28.962 183 114 5 144 316 40 216 1.34e-11 63.5
MS.gene09645.t1 AT1G63650 26.452 155 93 3 157 297 405 552 1.64e-11 65.5
MS.gene09645.t1 AT1G63650 26.452 155 93 3 157 297 405 552 1.64e-11 65.5
MS.gene09645.t1 AT1G63650 26.452 155 93 3 157 297 405 552 1.64e-11 65.5
MS.gene09645.t1 AT5G57150 29.282 181 112 5 144 314 41 215 1.70e-11 63.9
MS.gene09645.t1 AT5G57150 28.902 173 108 4 150 313 47 213 3.24e-11 63.2
MS.gene09645.t1 AT3G61950 30.822 146 86 3 157 299 128 261 5.94e-11 62.8
MS.gene09645.t1 AT4G00870 28.718 195 105 6 114 293 205 380 7.61e-11 63.2
MS.gene09645.t1 AT3G61950 30.822 146 86 3 157 299 128 261 8.70e-11 62.4
MS.gene09645.t1 AT3G61950 30.822 146 86 3 157 299 179 312 9.97e-11 62.4

Find 50 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGTGATCTTGAGCATTTC+TGG 0.145443 5.2:-6538108 None:intergenic
AGTAGTTGTGCATTGCTATT+TGG 0.235575 5.2:+6538650 MS.gene09645:CDS
ATGGATAAGGCTTCTGTATT+AGG 0.248877 5.2:+6538305 MS.gene09645:CDS
TTCAACATTGGTTCTAGTTT+TGG 0.266677 5.2:-6537951 None:intergenic
CTCTCTTGAATATTGCGTTT+TGG 0.303171 5.2:-6538065 None:intergenic
TCAGACACCTCATCAAATTC+TGG 0.305371 5.2:+6538458 MS.gene09645:CDS
TGGATAAGGCTTCTGTATTA+GGG 0.314098 5.2:+6538306 MS.gene09645:CDS
ACTCCTTCCAGACTTGAAAA+AGG 0.315242 5.2:+6538187 MS.gene09645:CDS
GGGAAATCTTTAACCTCAAA+AGG 0.344535 5.2:+6538017 MS.gene09645:CDS
TTGGTCTTAAGTGTCTTTGT+AGG 0.346951 5.2:-6537843 None:intergenic
GACACTCTTGCCTCAACTTC+AGG 0.353101 5.2:-6538530 None:intergenic
CAGATTCTACGTTGTTCCTT+TGG 0.354402 5.2:-6538388 None:intergenic
GACAAGTTGGTTGTGTGATT+TGG 0.403546 5.2:+6537579 MS.gene09645:CDS
GATGAAGATTCTCTATCTCT+TGG 0.405403 5.2:-6538616 None:intergenic
CAAAGCAAAGAATGTAAGAA+TGG 0.443123 5.2:-6537911 None:intergenic
GATTCAACTTTGAAACCAAA+AGG 0.445350 5.2:+6537978 MS.gene09645:CDS
GGAATTGCTCATAGTGTTTG+AGG 0.462284 5.2:-6537793 None:intergenic
GTACCCTATGTTTGAAGGGT+TGG 0.464961 5.2:-6537862 None:intergenic
ACTTCAGGCAGTGACCTACT+TGG 0.469914 5.2:-6538515 None:intergenic
GAAGGGTACCCTATGTTTGA+AGG 0.486283 5.2:-6537867 None:intergenic
CATTTGGATGTAGATGGATA+AGG 0.492545 5.2:+6538292 MS.gene09645:intron
TCACTGCAACAATCTTTCTC+TGG 0.493142 5.2:+6537747 MS.gene09645:CDS
AAGACCAACCCTTCAAACAT+AGG 0.497958 5.2:+6537858 MS.gene09645:CDS
ATATCATACCTCAGCAATGA+TGG 0.498759 5.2:-6538693 None:intergenic
AAAGCAAAGAATGTAAGAAT+GGG 0.507449 5.2:-6537910 None:intergenic
GTTGAATCAATGTTCAACAT+TGG 0.511485 5.2:-6537963 None:intergenic
ACCTCATCAAATTCTGGCTA+TGG 0.514888 5.2:+6538464 MS.gene09645:CDS
TTTCTTGAAGCTGTTTCACA+TGG 0.520049 5.2:-6538340 None:intergenic
AAGATTGTTGCAGTGACGTA+GGG 0.528270 5.2:-6537740 None:intergenic
AACTTTGAAACCAAAAGGCA+AGG 0.533663 5.2:+6537983 MS.gene09645:CDS
CACTCTTATGTTTCTCACAA+TGG 0.534111 5.2:-6538577 None:intergenic
GGAAATCTTTAACCTCAAAA+GGG 0.543386 5.2:+6538018 MS.gene09645:CDS
AACACTATGAGCAATTCCTC+AGG 0.557225 5.2:+6537798 MS.gene09645:CDS
TGACATCAAACGATGAGTCA+TGG 0.561998 5.2:+6537557 MS.gene09645:CDS
AGACCAACCCTTCAAACATA+GGG 0.575956 5.2:+6537859 MS.gene09645:CDS
AAGGGTACCCTATGTTTGAA+GGG 0.581486 5.2:-6537866 None:intergenic
ACGATGAGTCATGGACAAGT+TGG 0.581739 5.2:+6537566 MS.gene09645:CDS
AAAGATTGTTGCAGTGACGT+AGG 0.596812 5.2:-6537741 None:intergenic
TAGGTCACTGCCTGAAGTTG+AGG 0.613765 5.2:+6538520 MS.gene09645:CDS
CTGCAACAATCTTTCTCTGG+TGG 0.629704 5.2:+6537750 MS.gene09645:CDS
TTGAGGTTGTGTGAGAGCAA+TGG 0.632047 5.2:-6537776 None:intergenic
AAGGAACAACGTAGAATCTG+TGG 0.639673 5.2:+6538391 MS.gene09645:CDS
GAGATGTTAACTGCTTTGAG+AGG 0.640656 5.2:+6537820 MS.gene09645:CDS
TATTGGAGGAAAAGAACCAA+AGG 0.643739 5.2:+6538372 MS.gene09645:CDS
ACCATAGCCAGAATTTGATG+AGG 0.651808 5.2:-6538465 None:intergenic
GGATAAGGCTTCTGTATTAG+GGG 0.656232 5.2:+6538307 MS.gene09645:CDS
TGACATAACCATCATTGCTG+AGG 0.668356 5.2:+6538685 MS.gene09645:CDS
CTCACACCTCAAAACCAAGT+AGG 0.668534 5.2:+6538501 MS.gene09645:CDS
AGATTGTTGCAGTGACGTAG+GGG 0.677651 5.2:-6537739 None:intergenic
AAAGCAGTTAACATCTCCTG+AGG 0.687587 5.2:-6537814 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATGATACTAATTAA+TGG + chr5.2:6538257-6538276 MS.gene09645:intron 10.0%
!!! AATTTTGTTTGCACTTTTTT+TGG + chr5.2:6537633-6537652 MS.gene09645:intron 20.0%
! AAAGCAAAGAATGTAAGAAT+GGG - chr5.2:6537913-6537932 None:intergenic 25.0%
! ATGGTTACTCATTAATCATT+TGG + chr5.2:6538276-6538295 MS.gene09645:intron 25.0%
! ATTAATCATTTGGATGTAGA+TGG + chr5.2:6538286-6538305 MS.gene09645:intron 25.0%
! TCAAGAAAAAGTGAAACTAT+TGG + chr5.2:6538355-6538374 MS.gene09645:CDS 25.0%
! TCCTTAGAAAACCAAAAAAA+GGG + chr5.2:6538041-6538060 MS.gene09645:CDS 25.0%
!!! AATCTTTTTTTGGTAAGGAA+GGG - chr5.2:6537887-6537906 None:intergenic 25.0%
!!! TTGATGATTTTGTAATCTTC+TGG - chr5.2:6537705-6537724 None:intergenic 25.0%
AAAGTGCAAACAAAATTGTG+TGG - chr5.2:6537630-6537649 None:intergenic 30.0%
AGAAAAAGTGAAACTATTGG+AGG + chr5.2:6538358-6538377 MS.gene09645:CDS 30.0%
CAAAGCAAAGAATGTAAGAA+TGG - chr5.2:6537914-6537933 None:intergenic 30.0%
GGAAATCTTTAACCTCAAAA+GGG + chr5.2:6538018-6538037 MS.gene09645:CDS 30.0%
GTCCTTAGAAAACCAAAAAA+AGG + chr5.2:6538040-6538059 MS.gene09645:CDS 30.0%
GTTGAATCAATGTTCAACAT+TGG - chr5.2:6537966-6537985 None:intergenic 30.0%
! AAAGGCAAGGTTTTTAATCA+TGG + chr5.2:6537996-6538015 MS.gene09645:CDS 30.0%
! AAGGCAAGGTTTTTAATCAT+GGG + chr5.2:6537997-6538016 MS.gene09645:CDS 30.0%
! TGATTAAAAACCTTGCCTTT+TGG - chr5.2:6537996-6538015 None:intergenic 30.0%
!! GATTCAACTTTGAAACCAAA+AGG + chr5.2:6537978-6537997 MS.gene09645:CDS 30.0%
!!! AATTGAACCTTTTTCAAGTC+TGG - chr5.2:6538197-6538216 None:intergenic 30.0%
!!! GAATCTTTTTTTGGTAAGGA+AGG - chr5.2:6537888-6537907 None:intergenic 30.0%
!!! GAATGGGAAGAATCTTTTTT+TGG - chr5.2:6537897-6537916 None:intergenic 30.0%
!!! GGAAGAATCTTTTTTTGGTA+AGG - chr5.2:6537892-6537911 None:intergenic 30.0%
!!! TCCCTTTTTTTGGTTTTCTA+AGG - chr5.2:6538045-6538064 None:intergenic 30.0%
!!! TTCAACATTGGTTCTAGTTT+TGG - chr5.2:6537954-6537973 None:intergenic 30.0%
ATGGATAAGGCTTCTGTATT+AGG + chr5.2:6538305-6538324 MS.gene09645:CDS 35.0%
CACTCTTATGTTTCTCACAA+TGG - chr5.2:6538580-6538599 None:intergenic 35.0%
CATTTGGATGTAGATGGATA+AGG + chr5.2:6538292-6538311 MS.gene09645:intron 35.0%
GATGAAGATTCTCTATCTCT+TGG - chr5.2:6538619-6538638 None:intergenic 35.0%
GGGAAATCTTTAACCTCAAA+AGG + chr5.2:6538017-6538036 MS.gene09645:CDS 35.0%
TATGTGATCTTGAGCATTTC+TGG - chr5.2:6538111-6538130 None:intergenic 35.0%
TATTGGAGGAAAAGAACCAA+AGG + chr5.2:6538372-6538391 MS.gene09645:CDS 35.0%
TGGATAAGGCTTCTGTATTA+GGG + chr5.2:6538306-6538325 MS.gene09645:CDS 35.0%
! AGTAGTTGTGCATTGCTATT+TGG + chr5.2:6538650-6538669 MS.gene09645:CDS 35.0%
! CTCTCTTGAATATTGCGTTT+TGG - chr5.2:6538068-6538087 None:intergenic 35.0%
! GATGGTTATGTCAAGTTTTG+TGG - chr5.2:6538678-6538697 None:intergenic 35.0%
! TTTCTTGAAGCTGTTTCACA+TGG - chr5.2:6538343-6538362 None:intergenic 35.0%
!! AACTTTGAAACCAAAAGGCA+AGG + chr5.2:6537983-6538002 MS.gene09645:CDS 35.0%
!! TTGGTCTTAAGTGTCTTTGT+AGG - chr5.2:6537846-6537865 None:intergenic 35.0%
AAACTCTTGTGACTTTCCAC+AGG + chr5.2:6537677-6537696 MS.gene09645:intron 40.0%
AAAGATTGTTGCAGTGACGT+AGG - chr5.2:6537744-6537763 None:intergenic 40.0%
AAAGCAGTTAACATCTCCTG+AGG - chr5.2:6537817-6537836 None:intergenic 40.0%
AACACTATGAGCAATTCCTC+AGG + chr5.2:6537798-6537817 MS.gene09645:CDS 40.0%
AAGACCAACCCTTCAAACAT+AGG + chr5.2:6537858-6537877 MS.gene09645:CDS 40.0%
AAGATTGTTGCAGTGACGTA+GGG - chr5.2:6537743-6537762 None:intergenic 40.0%
AAGGAACAACGTAGAATCTG+TGG + chr5.2:6538391-6538410 MS.gene09645:CDS 40.0%
ACCATAGCCAGAATTTGATG+AGG - chr5.2:6538468-6538487 None:intergenic 40.0%
ACTCCTTCCAGACTTGAAAA+AGG + chr5.2:6538187-6538206 MS.gene09645:CDS 40.0%
AGACCAACCCTTCAAACATA+GGG + chr5.2:6537859-6537878 MS.gene09645:CDS 40.0%
CAGATTCTACGTTGTTCCTT+TGG - chr5.2:6538391-6538410 None:intergenic 40.0%
GGAATTGCTCATAGTGTTTG+AGG - chr5.2:6537796-6537815 None:intergenic 40.0%
GGATAAGGCTTCTGTATTAG+GGG + chr5.2:6538307-6538326 MS.gene09645:CDS 40.0%
TCACTGCAACAATCTTTCTC+TGG + chr5.2:6537747-6537766 MS.gene09645:CDS 40.0%
TCAGACACCTCATCAAATTC+TGG + chr5.2:6538458-6538477 MS.gene09645:CDS 40.0%
TGACATAACCATCATTGCTG+AGG + chr5.2:6538685-6538704 MS.gene09645:CDS 40.0%
TGACATCAAACGATGAGTCA+TGG + chr5.2:6537557-6537576 MS.gene09645:CDS 40.0%
! ACCTCATCAAATTCTGGCTA+TGG + chr5.2:6538464-6538483 MS.gene09645:CDS 40.0%
! GAGATGTTAACTGCTTTGAG+AGG + chr5.2:6537820-6537839 MS.gene09645:CDS 40.0%
!! AAGGGTACCCTATGTTTGAA+GGG - chr5.2:6537869-6537888 None:intergenic 40.0%
!! GACAAGTTGGTTGTGTGATT+TGG + chr5.2:6537579-6537598 MS.gene09645:CDS 40.0%
!! GTTTTCTAAGGACCCTTTTG+AGG - chr5.2:6538033-6538052 None:intergenic 40.0%
!! TGCGTTTTGGTCCCTTTTTT+TGG - chr5.2:6538055-6538074 None:intergenic 40.0%
!! TTGTAATCTTCTGGTTCCTG+TGG - chr5.2:6537696-6537715 None:intergenic 40.0%
!!! GAACCTTTTTCAAGTCTGGA+AGG - chr5.2:6538193-6538212 None:intergenic 40.0%
ACGATGAGTCATGGACAAGT+TGG + chr5.2:6537566-6537585 MS.gene09645:CDS 45.0%
AGATTGTTGCAGTGACGTAG+GGG - chr5.2:6537742-6537761 None:intergenic 45.0%
CTCACACCTCAAAACCAAGT+AGG + chr5.2:6538501-6538520 MS.gene09645:CDS 45.0%
CTGCAACAATCTTTCTCTGG+TGG + chr5.2:6537750-6537769 MS.gene09645:CDS 45.0%
GTACCCTATGTTTGAAGGGT+TGG - chr5.2:6537865-6537884 None:intergenic 45.0%
TTGAGGTTGTGTGAGAGCAA+TGG - chr5.2:6537779-6537798 None:intergenic 45.0%
!! GAAGGGTACCCTATGTTTGA+AGG - chr5.2:6537870-6537889 None:intergenic 45.0%
!!! CAGTGACCTACTTGGTTTTG+AGG - chr5.2:6538510-6538529 None:intergenic 45.0%
ACTTCAGGCAGTGACCTACT+TGG - chr5.2:6538518-6538537 None:intergenic 50.0%
GACACTCTTGCCTCAACTTC+AGG - chr5.2:6538533-6538552 None:intergenic 50.0%
TAGGTCACTGCCTGAAGTTG+AGG + chr5.2:6538520-6538539 MS.gene09645:CDS 50.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 6537556 6538712 6537556 ID=MS.gene09645
chr5.2 mRNA 6537556 6538712 6537556 ID=MS.gene09645.t1;Parent=MS.gene09645
chr5.2 exon 6537556 6537600 6537556 ID=MS.gene09645.t1.exon1;Parent=MS.gene09645.t1
chr5.2 CDS 6537556 6537600 6537556 ID=cds.MS.gene09645.t1;Parent=MS.gene09645.t1
chr5.2 exon 6537699 6538208 6537699 ID=MS.gene09645.t1.exon2;Parent=MS.gene09645.t1
chr5.2 CDS 6537699 6538208 6537699 ID=cds.MS.gene09645.t1;Parent=MS.gene09645.t1
chr5.2 exon 6538305 6538712 6538305 ID=MS.gene09645.t1.exon3;Parent=MS.gene09645.t1
chr5.2 CDS 6538305 6538712 6538305 ID=cds.MS.gene09645.t1;Parent=MS.gene09645.t1
Gene Sequence

>MS.gene09645

ATGACATCAAACGATGAGTCATGGACAAGTTGGTTGTGTGATTTGGTAAATAAAATTTTGATTTTATTCAACCACACAATTTTGTTTGCACTTTTTTTGGATCTTTTCATTTATTTTACATAAACTCTTGTGACTTTCCACAGGAACCAGAAGATTACAAAATCATCAATGACATTAACATAGCCCCTACGTCACTGCAACAATCTTTCTCTGGTGGTAGCCATTGCTCTCACACAACCTCAAACACTATGAGCAATTCCTCAGGAGATGTTAACTGCTTTGAGAGGCCTACAAAGACACTTAAGACCAACCCTTCAAACATAGGGTACCCTTCCTTACCAAAAAAAGATTCTTCCCATTCTTACATTCTTTGCTTTGACAATGAGAATCAAGAACCAAAACTAGAACCAATGTTGAACATTGATTCAACTTTGAAACCAAAAGGCAAGGTTTTTAATCATGGGAAATCTTTAACCTCAAAAGGGTCCTTAGAAAACCAAAAAAAGGGACCAAAACGCAATATTCAAGAGAGCAAGAAGACTGATTCAGCTGCCAGAAATGCTCAAGATCACATACTTGCTGAGAGAAAGAGAAGAGAAAAAATTAGTCAAAAGTTCATAGCTCTTTCAGCACTCCTTCCAGACTTGAAAAAGGTTCAATTTATTTTTACTCAAATTAATTTTACTCTTTATTTGTGAAACAAATTAATGATACTAATTAATGGTTACTCATTAATCATTTGGATGTAGATGGATAAGGCTTCTGTATTAGGGGATGCTATAAACCATGTGAAACAGCTTCAAGAAAAAGTGAAACTATTGGAGGAAAAGAACCAAAGGAACAACGTAGAATCTGTGGTATATGTTGAGAAGACAAAGTCATGTTCTTCAGATGAAGATGTTTCAGACACCTCATCAAATTCTGGCTATGGTAATTGTTGTCACACTCACACCTCAAAACCAAGTAGGTCACTGCCTGAAGTTGAGGCAAGAGTGTCAGAGAAAAACGTGCTGATTCGTGTCCATTGTGAGAAACATAAGAGTGTATTGATGAACATAATCCAAGAGATAGAGAATCTTCATCTATCAGTTACTAGTAGTTGTGCATTGCTATTTGGAACCACAAAACTTGACATAACCATCATTGCTGAGGTATGA
Protein sequence

>MS.gene09645.t1

MTSNDESWTSWLCDLEPEDYKIINDINIAPTSLQQSFSGGSHCSHTTSNTMSNSSGDVNCFERPTKTLKTNPSNIGYPSLPKKDSSHSYILCFDNENQEPKLEPMLNIDSTLKPKGKVFNHGKSLTSKGSLENQKKGPKRNIQESKKTDSAARNAQDHILAERKRREKISQKFIALSALLPDLKKMDKASVLGDAINHVKQLQEKVKLLEEKNQRNNVESVVYVEKTKSCSSDEDVSDTSSNSGYGNCCHTHTSKPSRSLPEVEARVSEKNVLIRVHCEKHKSVLMNIIQEIENLHLSVTSSCALLFGTTKLDITIIAEV