Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09772.t1 | XP_024632961.1 | 85.1 | 536 | 56 | 2 | 1 | 512 | 1 | 536 | 2.60E-266 | 927.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09772.t1 | Q9SZL8 | 28.3 | 470 | 314 | 6 | 32 | 499 | 70 | 518 | 4.2e-55 | 217.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09772.t1 | D3YBB9 | 79.3 | 512 | 106 | 0 | 1 | 512 | 49 | 560 | 3.3e-242 | 847.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09772.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09772.t1 | MTR_0558s0020 | 87.500 | 296 | 36 | 1 | 1 | 295 | 1 | 296 | 0.0 | 548 |
| MS.gene09772.t1 | MTR_1g083640 | 83.099 | 284 | 32 | 1 | 1 | 268 | 1 | 284 | 4.67e-176 | 497 |
| MS.gene09772.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 9.59e-156 | 444 |
| MS.gene09772.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 65 | 301 | 1 | 237 | 3.45e-146 | 424 |
| MS.gene09772.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 8.39e-35 | 134 |
| MS.gene09772.t1 | MTR_2g014100 | 82.449 | 245 | 34 | 1 | 1 | 236 | 1 | 245 | 1.64e-145 | 418 |
| MS.gene09772.t1 | MTR_0337s0040 | 72.308 | 260 | 32 | 2 | 1 | 259 | 1 | 221 | 1.69e-127 | 371 |
| MS.gene09772.t1 | MTR_3g008240 | 84.236 | 203 | 31 | 1 | 1 | 202 | 1 | 203 | 4.01e-121 | 354 |
| MS.gene09772.t1 | MTR_4g040430 | 83.663 | 202 | 29 | 1 | 1 | 202 | 1 | 198 | 6.59e-121 | 353 |
| MS.gene09772.t1 | MTR_5g071590 | 74.444 | 180 | 33 | 2 | 1 | 167 | 1 | 180 | 5.11e-93 | 281 |
| MS.gene09772.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 1.93e-89 | 271 |
| MS.gene09772.t1 | MTR_0019s0290 | 82.353 | 153 | 24 | 1 | 84 | 233 | 8 | 160 | 1.43e-88 | 269 |
| MS.gene09772.t1 | MTR_1281s0010 | 82.569 | 109 | 19 | 0 | 19 | 127 | 1 | 109 | 3.60e-59 | 191 |
| MS.gene09772.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 1.98e-39 | 146 |
| MS.gene09772.t1 | MTR_0337s0060 | 93.939 | 66 | 4 | 0 | 447 | 512 | 21 | 86 | 1.21e-35 | 133 |
| MS.gene09772.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 3.26e-32 | 131 |
| MS.gene09772.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 1.31e-31 | 121 |
| MS.gene09772.t1 | MTR_1g070355 | 26.994 | 326 | 213 | 8 | 41 | 362 | 80 | 384 | 4.90e-20 | 94.0 |
| MS.gene09772.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 6.04e-15 | 77.8 |
| MS.gene09772.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.35e-13 | 66.6 |
| MS.gene09772.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 2.41e-13 | 73.2 |
| MS.gene09772.t1 | MTR_1g013060 | 30.093 | 216 | 132 | 8 | 40 | 253 | 29 | 227 | 4.72e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09772.t1 | AT4G38180 | 28.632 | 475 | 306 | 7 | 32 | 499 | 70 | 518 | 1.68e-60 | 213 |
| MS.gene09772.t1 | AT3G06250 | 26.273 | 491 | 285 | 11 | 34 | 521 | 189 | 605 | 4.02e-41 | 158 |
| MS.gene09772.t1 | AT3G06250 | 26.273 | 491 | 285 | 11 | 34 | 521 | 189 | 605 | 4.02e-41 | 158 |
| MS.gene09772.t1 | AT3G06250 | 26.273 | 491 | 285 | 11 | 34 | 521 | 189 | 605 | 4.02e-41 | 158 |
| MS.gene09772.t1 | AT4G15090 | 24.946 | 461 | 319 | 8 | 50 | 507 | 66 | 502 | 4.57e-40 | 155 |
| MS.gene09772.t1 | AT4G15090 | 24.946 | 461 | 319 | 8 | 50 | 507 | 66 | 502 | 4.57e-40 | 155 |
| MS.gene09772.t1 | AT4G15090 | 24.946 | 461 | 319 | 8 | 50 | 507 | 66 | 502 | 4.57e-40 | 155 |
| MS.gene09772.t1 | AT4G15090 | 24.946 | 461 | 319 | 8 | 50 | 507 | 66 | 502 | 4.57e-40 | 155 |
| MS.gene09772.t1 | AT4G15090 | 24.946 | 461 | 319 | 8 | 50 | 507 | 66 | 502 | 4.57e-40 | 155 |
| MS.gene09772.t1 | AT1G76320 | 26.269 | 453 | 292 | 11 | 50 | 496 | 12 | 428 | 1.41e-39 | 153 |
| MS.gene09772.t1 | AT1G76320 | 26.269 | 453 | 292 | 11 | 50 | 496 | 12 | 428 | 2.42e-39 | 152 |
| MS.gene09772.t1 | AT1G76320 | 26.269 | 453 | 292 | 11 | 50 | 496 | 12 | 428 | 2.62e-39 | 152 |
| MS.gene09772.t1 | AT1G76320 | 26.269 | 453 | 292 | 11 | 50 | 496 | 12 | 428 | 2.62e-39 | 152 |
| MS.gene09772.t1 | AT2G27110 | 25.304 | 494 | 306 | 11 | 10 | 499 | 29 | 463 | 2.34e-37 | 147 |
| MS.gene09772.t1 | AT2G27110 | 25.304 | 494 | 306 | 11 | 10 | 499 | 29 | 463 | 2.34e-37 | 147 |
| MS.gene09772.t1 | AT4G38170 | 28.261 | 276 | 187 | 4 | 235 | 507 | 24 | 291 | 6.54e-37 | 144 |
| MS.gene09772.t1 | AT2G27110 | 29.412 | 289 | 196 | 3 | 213 | 499 | 36 | 318 | 1.96e-36 | 144 |
| MS.gene09772.t1 | AT5G18960 | 25.050 | 503 | 299 | 13 | 24 | 521 | 200 | 629 | 2.43e-36 | 144 |
| MS.gene09772.t1 | AT5G18960 | 25.050 | 503 | 299 | 13 | 24 | 521 | 200 | 629 | 2.43e-36 | 144 |
| MS.gene09772.t1 | AT1G10240 | 26.067 | 445 | 291 | 13 | 49 | 482 | 62 | 479 | 2.13e-35 | 140 |
| MS.gene09772.t1 | AT1G10240 | 26.067 | 445 | 291 | 13 | 49 | 482 | 62 | 479 | 2.13e-35 | 140 |
| MS.gene09772.t1 | AT5G28530 | 26.077 | 441 | 282 | 12 | 40 | 462 | 60 | 474 | 3.72e-35 | 140 |
| MS.gene09772.t1 | AT5G28530 | 26.077 | 441 | 282 | 12 | 40 | 462 | 60 | 474 | 3.79e-35 | 140 |
| MS.gene09772.t1 | AT5G28530 | 26.077 | 441 | 282 | 12 | 40 | 462 | 60 | 474 | 3.79e-35 | 140 |
| MS.gene09772.t1 | AT3G22170 | 22.129 | 479 | 332 | 9 | 34 | 507 | 69 | 511 | 3.34e-33 | 135 |
| MS.gene09772.t1 | AT3G22170 | 22.129 | 479 | 332 | 9 | 34 | 507 | 69 | 511 | 3.34e-33 | 135 |
| MS.gene09772.t1 | AT1G80010 | 25.427 | 468 | 300 | 15 | 41 | 493 | 101 | 534 | 5.77e-31 | 127 |
| MS.gene09772.t1 | AT2G32250 | 23.944 | 497 | 301 | 12 | 4 | 495 | 10 | 434 | 1.06e-30 | 127 |
| MS.gene09772.t1 | AT2G32250 | 23.944 | 497 | 301 | 12 | 4 | 495 | 10 | 434 | 1.56e-30 | 126 |
| MS.gene09772.t1 | AT2G32250 | 23.944 | 497 | 301 | 12 | 4 | 495 | 10 | 434 | 1.56e-30 | 126 |
| MS.gene09772.t1 | AT2G32250 | 23.944 | 497 | 301 | 12 | 4 | 495 | 10 | 434 | 1.73e-30 | 126 |
| MS.gene09772.t1 | AT2G32250 | 23.944 | 497 | 301 | 12 | 4 | 495 | 10 | 434 | 1.73e-30 | 126 |
| MS.gene09772.t1 | AT2G32250 | 23.944 | 497 | 301 | 12 | 4 | 495 | 10 | 434 | 1.73e-30 | 126 |
| MS.gene09772.t1 | AT2G32250 | 23.947 | 451 | 269 | 10 | 50 | 495 | 12 | 393 | 8.86e-30 | 124 |
| MS.gene09772.t1 | AT2G32250 | 23.947 | 451 | 269 | 10 | 50 | 495 | 12 | 393 | 1.00e-29 | 124 |
| MS.gene09772.t1 | AT1G52520 | 23.146 | 445 | 305 | 9 | 41 | 484 | 91 | 499 | 4.15e-27 | 116 |
| MS.gene09772.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 106 | 369 | 1.12e-26 | 114 |
| MS.gene09772.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 1.17e-26 | 114 |
| MS.gene09772.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 177 | 440 | 1.34e-26 | 114 |
| MS.gene09772.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 1.44e-26 | 114 |
| MS.gene09772.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 1.44e-26 | 114 |
| MS.gene09772.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 1.86e-26 | 114 |
| MS.gene09772.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 1.86e-26 | 114 |
Find 70 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 5.1:+5924339 | MS.gene09772:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5.1:+5924030 | MS.gene09772:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5.1:+5924297 | MS.gene09772:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5.1:+5923246 | MS.gene09772:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 5.1:+5923749 | MS.gene09772:intron |
| TATGGTTTGAAGTTTCTTAT+TGG | 0.239202 | 5.1:-5923876 | None:intergenic |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5.1:+5923782 | MS.gene09772:CDS |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5.1:+5924071 | MS.gene09772:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5.1:-5923894 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.1:-5923296 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5.1:+5924171 | MS.gene09772:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.1:+5923303 | MS.gene09772:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.1:+5923295 | MS.gene09772:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5.1:+5924170 | MS.gene09772:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5.1:-5922766 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5.1:+5922537 | MS.gene09772:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 5.1:+5922608 | MS.gene09772:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 5.1:+5922691 | MS.gene09772:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.1:+5922943 | MS.gene09772:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5.1:+5922825 | MS.gene09772:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.1:+5922808 | MS.gene09772:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5.1:+5922973 | MS.gene09772:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5.1:+5922462 | MS.gene09772:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5.1:+5923961 | MS.gene09772:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5.1:+5924125 | MS.gene09772:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5.1:+5922657 | MS.gene09772:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5.1:+5923018 | MS.gene09772:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5.1:-5922802 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 5.1:+5922595 | MS.gene09772:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5.1:+5923086 | MS.gene09772:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 5.1:-5922913 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5.1:+5922651 | MS.gene09772:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5.1:-5923762 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5.1:+5924072 | MS.gene09772:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5.1:+5923099 | MS.gene09772:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5.1:+5924311 | MS.gene09772:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5.1:-5924391 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5.1:+5923005 | MS.gene09772:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5.1:-5923191 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 5.1:-5922901 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5.1:+5924158 | MS.gene09772:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5.1:-5923057 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 5.1:+5924330 | MS.gene09772:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5.1:+5924176 | MS.gene09772:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 5.1:+5922861 | MS.gene09772:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5.1:-5924279 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 5.1:+5922702 | MS.gene09772:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5.1:-5924274 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5.1:+5922703 | MS.gene09772:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 5.1:+5922527 | MS.gene09772:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5.1:-5923907 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5.1:+5923153 | MS.gene09772:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5.1:+5922486 | MS.gene09772:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5.1:+5923021 | MS.gene09772:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 5.1:+5922860 | MS.gene09772:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5.1:-5924392 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 5.1:+5922451 | MS.gene09772:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5.1:+5923012 | MS.gene09772:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 5.1:+5923893 | MS.gene09772:CDS |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5.1:+5923092 | MS.gene09772:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5.1:+5923006 | MS.gene09772:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5.1:+5923095 | MS.gene09772:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5.1:+5924389 | MS.gene09772:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5.1:-5922751 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5.1:-5924127 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5.1:+5923026 | MS.gene09772:CDS |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5.1:+5923962 | MS.gene09772:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5.1:+5924312 | MS.gene09772:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5.1:-5924862 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.683597 | 5.1:+5923889 | MS.gene09772:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCTATAAGATATATAAG+TGG | + | chr5.1:5922860-5922879 | MS.gene09772:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr5.1:5922651-5922670 | MS.gene09772:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | + | chr5.1:5922861-5922880 | MS.gene09772:CDS | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr5.1:5922595-5922614 | MS.gene09772:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr5.1:5923478-5923497 | MS.gene09772:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr5.1:5924100-5924119 | MS.gene09772:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr5.1:5923450-5923469 | MS.gene09772:intron | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr5.1:5923938-5923957 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr5.1:5922657-5922676 | MS.gene09772:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr5.1:5923295-5923314 | MS.gene09772:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr5.1:5923321-5923340 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr5.1:5924471-5924490 | None:intergenic | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | + | chr5.1:5922527-5922546 | MS.gene09772:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr5.1:5924297-5924316 | MS.gene09772:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr5.1:5922486-5922505 | MS.gene09772:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr5.1:5923368-5923387 | MS.gene09772:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr5.1:5924436-5924455 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr5.1:5924471-5924490 | MS.gene09772:intron | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr5.1:5924030-5924049 | MS.gene09772:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr5.1:5923470-5923489 | MS.gene09772:intron | 25.0% |
| !! | TATGGTTTGAAGTTTCTTAT+TGG | - | chr5.1:5923879-5923898 | None:intergenic | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr5.1:5923726-5923745 | MS.gene09772:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr5.1:5924572-5924591 | MS.gene09772:intron | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr5.1:5922647-5922666 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr5.1:5923477-5923496 | MS.gene09772:intron | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr5.1:5922973-5922992 | MS.gene09772:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr5.1:5924104-5924123 | MS.gene09772:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr5.1:5924573-5924592 | MS.gene09772:intron | 25.0% |
| AAACACATATGATCTTTCCA+TGG | - | chr5.1:5923541-5923560 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr5.1:5922703-5922722 | MS.gene09772:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr5.1:5923303-5923322 | MS.gene09772:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr5.1:5924071-5924090 | MS.gene09772:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | + | chr5.1:5923006-5923025 | MS.gene09772:CDS | 30.0% | |
| ATATTAACTTCATCTGAGAG+TGG | + | chr5.1:5922451-5922470 | MS.gene09772:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr5.1:5924072-5924091 | MS.gene09772:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr5.1:5923765-5923784 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | - | chr5.1:5924644-5924663 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr5.1:5923246-5923265 | MS.gene09772:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr5.1:5922691-5922710 | MS.gene09772:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr5.1:5924476-5924495 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | + | chr5.1:5923407-5923426 | MS.gene09772:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr5.1:5924474-5924493 | MS.gene09772:intron | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr5.1:5923986-5924005 | MS.gene09772:CDS | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr5.1:5924645-5924664 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr5.1:5923299-5923318 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr5.1:5922792-5922811 | MS.gene09772:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr5.1:5922537-5922556 | MS.gene09772:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr5.1:5924282-5924301 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr5.1:5922702-5922721 | MS.gene09772:CDS | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr5.1:5923174-5923193 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr5.1:5924416-5924435 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr5.1:5923060-5923079 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr5.1:5923685-5923704 | MS.gene09772:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr5.1:5922904-5922923 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr5.1:5922825-5922844 | MS.gene09772:CDS | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | + | chr5.1:5924531-5924550 | MS.gene09772:intron | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr5.1:5923050-5923069 | MS.gene09772:CDS | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr5.1:5923929-5923948 | MS.gene09772:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | + | chr5.1:5924756-5924775 | MS.gene09772:intron | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr5.1:5924656-5924675 | MS.gene09772:intron | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr5.1:5923382-5923401 | MS.gene09772:intron | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr5.1:5924657-5924676 | MS.gene09772:intron | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr5.1:5924753-5924772 | MS.gene09772:intron | 30.0% |
| !!! | AAGACATAGCCAGTATTTTT+TGG | + | chr5.1:5923208-5923227 | MS.gene09772:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | + | chr5.1:5923209-5923228 | MS.gene09772:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr5.1:5924821-5924840 | MS.gene09772:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr5.1:5923941-5923960 | MS.gene09772:CDS | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr5.1:5924311-5924330 | MS.gene09772:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr5.1:5922608-5922627 | MS.gene09772:CDS | 35.0% | |
| CATAAATTCCAAGGCAAGAT+AGG | - | chr5.1:5923508-5923527 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr5.1:5924312-5924331 | MS.gene09772:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr5.1:5922943-5922962 | MS.gene09772:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr5.1:5924646-5924665 | None:intergenic | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr5.1:5922791-5922810 | MS.gene09772:CDS | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | + | chr5.1:5924158-5924177 | MS.gene09772:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr5.1:5922786-5922805 | MS.gene09772:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr5.1:5923005-5923024 | MS.gene09772:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr5.1:5922728-5922747 | MS.gene09772:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | + | chr5.1:5923086-5923105 | MS.gene09772:CDS | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | - | chr5.1:5923517-5923536 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr5.1:5922769-5922788 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr5.1:5923782-5923801 | MS.gene09772:CDS | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | + | chr5.1:5924594-5924613 | MS.gene09772:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr5.1:5924241-5924260 | MS.gene09772:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr5.1:5923388-5923407 | MS.gene09772:intron | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | + | chr5.1:5924114-5924133 | MS.gene09772:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr5.1:5923954-5923973 | MS.gene09772:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr5.1:5924823-5924842 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr5.1:5924171-5924190 | MS.gene09772:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr5.1:5924763-5924782 | MS.gene09772:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr5.1:5923825-5923844 | MS.gene09772:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr5.1:5924824-5924843 | MS.gene09772:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr5.1:5924277-5924296 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr5.1:5923635-5923654 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr5.1:5922462-5922481 | MS.gene09772:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr5.1:5924488-5924507 | MS.gene09772:intron | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr5.1:5924720-5924739 | MS.gene09772:intron | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | + | chr5.1:5923521-5923540 | MS.gene09772:intron | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr5.1:5924719-5924738 | MS.gene09772:intron | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr5.1:5924487-5924506 | MS.gene09772:intron | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr5.1:5923889-5923908 | MS.gene09772:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr5.1:5923631-5923650 | MS.gene09772:intron | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | - | chr5.1:5923220-5923239 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | + | chr5.1:5923749-5923768 | MS.gene09772:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | + | chr5.1:5924626-5924645 | MS.gene09772:intron | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr5.1:5924339-5924358 | MS.gene09772:CDS | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr5.1:5924766-5924785 | MS.gene09772:intron | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr5.1:5924170-5924189 | MS.gene09772:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr5.1:5922742-5922761 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr5.1:5923012-5923031 | MS.gene09772:CDS | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr5.1:5923095-5923114 | MS.gene09772:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr5.1:5923153-5923172 | MS.gene09772:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr5.1:5922754-5922773 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | - | chr5.1:5924130-5924149 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr5.1:5924389-5924408 | MS.gene09772:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr5.1:5924741-5924760 | None:intergenic | 45.0% | |
| CTCAAGTAGCACAAATGCTC+TGG | - | chr5.1:5922916-5922935 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr5.1:5922796-5922815 | MS.gene09772:CDS | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | + | chr5.1:5923092-5923111 | MS.gene09772:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr5.1:5924330-5924349 | MS.gene09772:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr5.1:5924639-5924658 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr5.1:5924721-5924740 | MS.gene09772:intron | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr5.1:5923194-5923213 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr5.1:5922805-5922824 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr5.1:5924193-5924212 | MS.gene09772:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr5.1:5924176-5924195 | MS.gene09772:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr5.1:5922808-5922827 | MS.gene09772:CDS | 45.0% |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr5.1:5923216-5923235 | MS.gene09772:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | - | chr5.1:5923897-5923916 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | + | chr5.1:5923893-5923912 | MS.gene09772:CDS | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | + | chr5.1:5924676-5924695 | MS.gene09772:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | - | chr5.1:5924394-5924413 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | + | chr5.1:5924125-5924144 | MS.gene09772:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | + | chr5.1:5924677-5924696 | MS.gene09772:intron | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr5.1:5923962-5923981 | MS.gene09772:CDS | 50.0% | |
| TGGGTGATCCTATCTTGCCT+TGG | + | chr5.1:5923497-5923516 | MS.gene09772:intron | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr5.1:5923961-5923980 | MS.gene09772:CDS | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr5.1:5923018-5923037 | MS.gene09772:CDS | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | - | chr5.1:5923910-5923929 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | - | chr5.1:5924395-5924414 | None:intergenic | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr5.1:5923099-5923118 | MS.gene09772:CDS | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr5.1:5923021-5923040 | MS.gene09772:CDS | 55.0% |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr5.1:5923026-5923045 | MS.gene09772:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 5922442 | 5924880 | 5922442 | ID=MS.gene09772 |
| chr5.1 | mRNA | 5922442 | 5924880 | 5922442 | ID=MS.gene09772.t1;Parent=MS.gene09772 |
| chr5.1 | exon | 5922442 | 5923324 | 5922442 | ID=MS.gene09772.t1.exon1;Parent=MS.gene09772.t1 |
| chr5.1 | CDS | 5922442 | 5923324 | 5922442 | ID=cds.MS.gene09772.t1;Parent=MS.gene09772.t1 |
| chr5.1 | exon | 5923759 | 5924410 | 5923759 | ID=MS.gene09772.t1.exon2;Parent=MS.gene09772.t1 |
| chr5.1 | CDS | 5923759 | 5924410 | 5923759 | ID=cds.MS.gene09772.t1;Parent=MS.gene09772.t1 |
| chr5.1 | exon | 5924841 | 5924880 | 5924841 | ID=MS.gene09772.t1.exon3;Parent=MS.gene09772.t1 |
| chr5.1 | CDS | 5924841 | 5924880 | 5924841 | ID=cds.MS.gene09772.t1;Parent=MS.gene09772.t1 |
| Gene Sequence |
| Protein sequence |
