AlfalfaGEDB | MS.gene09842

M. sativa cultivar XinJiangDaYe / MS.gene09842

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09842.t1	GAU37750.1	39.3	183	109	2	29	209	27	209	8.40E-30	140.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09842.t1	A0A2Z6NMK1	39.3	183	109	2	29	209	27	209	6.0e-30	140.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene09842.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09842.t1	MTR_4g123470	29.560	159	112	0	36	194	52	210	2.32e-21	88.2
MS.gene09842.t1	MTR_1g054495	23.494	166	126	1	44	209	57	221	1.88e-12	64.3
MS.gene09842.t1	MTR_0014s0220	28.472	144	87	3	52	195	683	810	1.38e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 44 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAATGGATTCCATGG+TGG	0.635851	7.1:-7354799	MS.gene09842:CDS
AAGACAATGGATTCCATGGT+GGG	0.554852	7.1:-7354798	MS.gene09842:CDS
AAGGCAACAAAGATTGGCAG+TGG	0.562007	7.1:-7354838	MS.gene09842:CDS
AAGTACATCAAATGTAATGA+AGG	0.524181	7.1:-7354746	MS.gene09842:CDS
AATGATCTTAACTCCTTATA+TGG	0.327626	7.1:-7355074	MS.gene09842:CDS
AATGATCTTTATGAAGTTCT+TGG	0.265359	7.1:-7355203	MS.gene09842:CDS
ACAAATGTGATGTACTAATA+AGG	0.256110	7.1:-7354873	MS.gene09842:CDS
ACTTAAGCTTATCCCCACCA+TGG	0.632346	7.1:+7354785	None:intergenic
AGACAATGGATTCCATGGTG+GGG	0.640570	7.1:-7354797	MS.gene09842:CDS
ATAAAATGCTCAACAAAGGA+AGG	0.558305	7.1:+7355365	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAAGGCAACAAAGAT+TGG	-	chr7.1:7355385-7355404	MS.gene09842:CDS	30.0%
AATAAGGGATGGAAAAAAGA+AGG	-	chr7.1:7355372-7355391	MS.gene09842:CDS	30.0%
ATAAAATGCTCAACAAAGGA+AGG	+	chr7.1:7354867-7354886	None:intergenic	30.0%
ATTAATATGTATGGACCTAC+AGG	-	chr7.1:7355325-7355344	MS.gene09842:CDS	30.0%
CAAATGTAATGAAGGTTTCT+AGG	-	chr7.1:7355491-7355510	MS.gene09842:CDS	30.0%
TACTGCTTATATCATCAATG+AGG	-	chr7.1:7354745-7354764	MS.gene09842:CDS	30.0%
TAGTACATCACATTTGTACT+CGG	+	chr7.1:7355353-7355372	None:intergenic	30.0%
TGATCTTTATGAAGTTCTTG+GGG	-	chr7.1:7355028-7355047	MS.gene09842:intron	30.0%
ATATCTCATTTACAGCCGTA+TGG	-	chr7.1:7354831-7354850	MS.gene09842:CDS	35.0%
TGTGATGTACTAATAAGGGA+TGG	-	chr7.1:7355361-7355380	MS.gene09842:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	7354732	7355519	7354732	ID=MS.gene09842
chr7.1	mRNA	7354732	7355519	7354732	ID=MS.gene09842.t1;Parent=MS.gene09842
chr7.1	exon	7355485	7355519	7355485	ID=MS.gene09842.t1.exon1;Parent=MS.gene09842.t1
chr7.1	CDS	7355485	7355519	7355485	ID=cds.MS.gene09842.t1;Parent=MS.gene09842.t1
chr7.1	exon	7355057	7355405	7355057	ID=MS.gene09842.t1.exon2;Parent=MS.gene09842.t1
chr7.1	CDS	7355057	7355405	7355057	ID=cds.MS.gene09842.t1;Parent=MS.gene09842.t1
chr7.1	exon	7354732	7354977	7354732	ID=MS.gene09842.t1.exon3;Parent=MS.gene09842.t1
chr7.1	CDS	7354732	7354977	7354732	ID=cds.MS.gene09842.t1;Parent=MS.gene09842.t1

Gene Sequence

>MS.gene09842

ATGGAGAAATACTTACTGCTTATATCATCAATGAGGTTAGAACTTCCTATTATTTTATGTTGAGAAATTGAATATTGTTTAGTGAATTATCTAAACTATATATCTCATTTACAGCCGTATGGAGAGATTAGACCTTCCTTTGTTGAGCATTTTATCAACAAACTTGAAAGAGAATTTATATTGTGATGCAAAATCCAATAGACAAAAAGTTAAGTTCAATCAAAACATTGAACATCCACTTCTAACTGAGGGATGGATCAACTTAAGGGAGTTTTATGGTTGGAATGAAGATAAAATGATCTTTATGAAGTTCTTGGGGAATGATCGTTTCCAATTCACTGCATTTCGTGGACATTTGAATGTCAACTCATTGCCATCATGGCACACTTACAAGCAAGGAATTGAGGATCTCAACCATTATGAAATGATCTTAACTCCTTATATGGCTGCAGGTTATGAATTGGTAAGTACCAACAACTCCTTCTAAAATGATACATCTCTATAAAGTTGAAAGCTATTCTAATTGTCATTTTTTTTTTCAGACACTGAACATTGACTTTGGTGATTACATTAGAAGCTCAGGCTTCTCTGCTATTAATATGTATGGACCTACAGGCACCGAGTACAAATGTGATGTACTAATAAGGGATGGAAAAAAGAAGGCAACAAAGATTGGCAGTGGATGGAACAAATTTTGTAAAGACAATGGATTCCATGGTGGGGATAAGCTTAAGTTTAAGTTTGTGGATATAAGTACATCAAATGTAATGAAGGTTTCTAGGATTTAA

Protein sequence

>MS.gene09842.t1

MEKYLLLISSMSRMERLDLPLLSILSTNLKENLYCDAKSNRQKVKFNQNIEHPLLTEGWINLREFYGWNEDKMIFMKFLGNDRFQFTAFRGHLNVNSLPSWHTYKQGIEDLNHYEMILTPYMAAGYELTLNIDFGDYIRSSGFSAINMYGPTGTEYKCDVLIRDGKKKATKIGSGWNKFCKDNGFHGGDKLKFKFVDISTSNVMKVSRI